>input_sequence_74234
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-------------ATGGCTTGCCTGGCTGCTCTCGGAAATAGATACCTGGCCGGAGGTGCACCCATGGAGGAGCTCCAGG
AGGCCGACGTGCTGTGGCCCGACACGCCGCCGCCGTCGCGGGACCGCCAGAGCCGCCTGCCGGAGCTGCTGGACGCGGCC
GCTGTCG------------AGTTCTCGTGCGAGTCGTTCGGCAGCGACGACGACGGCCCCGCGGCGTCCTCGTCGATGAG
CTCGACGTCCTCGTCGACGAGCGTGCTGCCGTTTGGTGGTGGGTCCTCCGGTGGCTTCCTCTCCTACCCTTCCGCCTTCG
CCGGCGGGCATGGCGGCGGTGATGACATGGCGGAGGAGTTCCAGGAGGCGGACGTGCTGTGGCCGGACGACGGCTACGCG
ACGGGGGAGCGCGCCGGCGCCGACGGAGGGGAACTCTGGTGGCTTTGCTGCGGCTTCGGTGGTGACGCGGCCGGCTACCA
CCGCGCGGAGCCTGCAGCTGGAGGTCAACGTCAAGCGTGGAGACCTCCGGTGTCGTCTCCGATTGATATCCCTACCGGAG
TTGCCA------CCGCCGCCGCTCGCCGTTGGCGCGCGGGGACCTTGCTGGTGCACCGTCGATCCATAGGCACGGATTAA
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>chr1B_1_TraesCS1B01G351500
ACTGCGAGAGGTCTCGCAGCAAACGGAACGGGGAGGAGACTATGACACTCTGTGACTGTGAGTGATCCCGAGGAGAGTTT
GTGTTAGGCGGAAATTGATGGATATTTGTTATTATGTGATGTGATGACTAATCTCAGTATTGACGGTCTATCGCTGGTTT
CTGGAAGCTCTGCACTTATGCTCTT-GACTTTTTCGTTCGACTGGCTTCGGATTCTGTC------GTTTCTCACACTAAA
ATCTTGGTTCATGATCCAATTACACTGTGGCCACGCAGGTAAGCATGGCAACTTGAAACTGCATT-TGCGTAGTTATTTG
ACCCTAT-CCCCCCTGAAAATCTAAACTAATCTAGAGTGATGTGAGACTGAAGGGTTAGGTACAGCTAGCTCCTGACGGA
ATCTAACTGCATATAAGCAGGCAAATAAAACTTCTATAGTA--------------------------------AGGCGTG
AGCCGTGGCCA-TCCTGGGAGGGAGGATGACTTGCTGTGTGGGGCTCCCTAACCGCACCCCTTGTCTGCGTTACCCGGTC
AAGCATCATG-AGGTCGCGAATGATTGGTTGCCCACCGGATTAACCCAATCTGCCATTTCTTATGCGCTTGCAACCGTCA
CTCCATCACCAATA-TTTTT--TAGTATTCTCCATCCCTCTCTTGCAATCAAGCTCTCTCCTGTCCTAGAAGCAGATAAC
GATGTACATTTCTGCAAAAATCGCTGTCACTGACATGTAGTATGACATGTCAGTTTTGTTTCTTTCACAAGTATCGCGTA
GTTTCATTTTGAATATGACTCGGCATTTCGTGGCCAACACAGACCAGCACGTATTAGTCGATAATTAAAAGGCGGCATTG
AACGCCATGAGGCGTCACGTACGTATG----CATAATCTGTCATTTTGCGGAGCGCTGCGCAGCTAACCAAATTTAATCG
CGGCCAGGAGTGCCCCCTACGTCACGTCATCACACACGGCGATGCGACGCGCTTCTCTCTTGCGGCAAGGCGCGCGCAAC
CC---TTACAAGAATGGCTTGCCTGGCTGCTCTCGGAAATAGATACCTGGCCGGAGGTGCACCCATGGAGGAGCTCCAGG
AGGCCGACGTGCTGTGGCCCGACACGCCGCCGCCGTCGCGGGACCGCCAGAGCCGCCTGCCGGAGCTGCTGGACGCGGCC
GCTGTCG------------AGTTCTCGTGCGAGTCGTTCGGCAGCGACGACGACGGCCCCGCGGCGTCCTCGTCGATGAG
CTCGACGTCCTCGTCGACGAGCGTGCTGCCGTTTGGTGGTGGGTCCTCCGGTGGCTTCCTCTCCTACCCTTCCGCCTTCG
CCGGCGGGCATGGCGGCGGTGATGACATGGCGGAGGAGTTCCAGGAGGCGGACGTGCTGTGGCCGGACGACGGCTACGCG
ACGGGGGAGCGCGCCGGCGCCGACGGAGGGGAACTCTGGTGGCTTTGCTGCGGCTTCGGTGGTGACGCGGCCGGCTACCA
CCGCGCGGAGCCTGCAGCTGGAGGTCAACGTCAAGCGTGGAGACCTCCGGTGTCGTCTCCGATTGATATCCCTACCGGAG
TTGCCA------CCGCCGCCGCTCGCCGTTGGCGCGCGGGGACCTTGCTGGTGCACCGTCGATCCATAGGCACGG----A
TTAAGCTCGGCTAGTTGATGCTTTTGTTTCATTTCTTCACCATTTTCGTTGGAAAATGGGGTGTTGTT-GATCGTGATCA
AATTTTCTTGTAGTA---TATATAACTACGAATTACAGGCGAGAGGTGTTAGAAATCAGGAGCGCGAGTGTAGTAGTGAG
GAAAAGATATTATTGGTGATATTTTTG-CCTATCGAAATGATAGTATGAGGATTTTTTTAGGCAAGATAGTATGAGGAAG
GCAAAAATATATATTGGCAATGTGATTGTGATGGTACGAAGGGAATGTGGTCTTTTCCTCCTGGGTTGCACGTGCACTGT
GCACGAACTCTCAAAGCGCACCAAATCCACGGATACTTTCCGCTGGGTTTGGCGGTCGATCCGCTGACCTTTTCGCGTCT
CG-----ATCGTTTTCCCTGATGAGCAGAGACGACGACCTGCAAGCTGCAATGCAAGTTGCAGTGCCAACGAACTGCCAG
GGCATAGCTGATCACTTAGGCATGAGAACTGCGAGGGTATATCTATATCTTCTTGGAAGCCCCTCCTTTCGAACACGTAA
ATAAAACTTAAGAAGTGTATATATATGGGGCTCCGCATGGCTGTTGGCGCACACAATCCATCAGATGAAGAGCACTATTG
TACAATATTTCTCTGCATATTTTCCAAGCTGGAGCACATGGCAGATATCCAAGGGCATCACATTTGCTGTCTATTTTCAT
TATAGTAATAGATTGATTATGAACAAGTTAACCGAAACATAATTTAGCATCCATAAAATGAGTTGACTATAGTTATTTAT
CCTAAACCATGCCGCTGCAACAGTAGAGCCGCCCTGCTCAACGAATGCACGCCAGCCAGTTTTTTGCTTCCGTCTTCTCT
CACATGCACAACATGCGCATGCACAATAGTCAATCCACTTTTAGTTGCATTTTTATTGTACACAGTTTCATTTTTCCGTT
ATGCACTCAAGCCACATATTTAATCAACTCGGCAGCATCCCAGTACAGTACCAC
>chr1D_33
GAGGAGAC----------------------------------TGACGCTCTGTGACCGTGAGTGATCCC---GAGAGTTT
GTGCTAGGCGG-AATTGATGGATATTTGTTATTATGTGATGTGATGACTAATCTCAGTATTGACTGTCTATCTCTGGTTT
CTGGATGCTCTGCACATCTGCTCTT-GAC-TTTTCGTTCGACTGGCTTTGGATTGTGTCATTTTCGTTTCTCACACT--A
ATTTTGGTTCATGATCCAATTGCACTGTGGCCACGCAGGTAAGCATGGCAACTTGAAACTGTATT-CGCGTAGTTATTTG
ACCCTAAACCCCCCTAAAAATCTAAACTAATCTAGAGCGATGTGAGACTGAAGGGTTAGGTGCAGCTAGTTCCTGACGG-
-----------------------AATAAAACTTCTATAGTA--------------------------------AGGCGTG
AGCCGTGGCCA-TCCT----GGGAGGATGACTTGCTGTGTGGGTCTCCCTAACCGCATCCCTTGTCCACGTTACCCGGTC
AAGCATCATCCAGGTCGCGAATGATTGGTTGCCCACCGGATTAACCCAATCTGCCATTTCTTATGCGCTTGCAACCGTCA
CTGCATCACCAATCTTTTTC--TAGTATTCCCCATCTATCTCTTGCAATCAAGCTCTCTCTTGTCCTAGAAGCAGATAAC
GATGTACATTTCTGCAAAAATCGCTGTCACTGACATATAGTATGATGCCTCAGTTTTGTTTCTTTCACAAGTATCGCGCA
GTTTCATTTTGAATATGACTCGGCATTTTGTGGCCAACACAAACCAGCACGCATAAGTCGATTGTT-AAAGTCGGCATTG
AACGGCATGTGGCGTCACGTACGTAGTATTACATAATCTGTCATTTTGCTGAGCGCTGCGCAGTTAACCAAATTTAATCA
AGGCCAGGAGTGCCCCCTACGTCACGTCATCACACACGGCGATGCGACGCGCTTCTCTCTTGCGGCAAGGCGCGCGCAAC
CCATATTACAAGAATGGCTTGCCTGGCTGCTCTCGGAAATAGTTTCCTGGCCGGAGGTGCGCCCATGGAGGAGCTCCAGG
AGGCCGACGTGCTGTGGCCCGACACGCCGCCGCCGTCGCGGGACCGTGAGAGGAGCCTCCAGGATCAGCTGTACGACTCC
GCTGCCGCGGCCGCCGTCGAGTTCTCGTGCGAGTCGTTCGGCAGCGACGACGACGGCCCTGCGGCGTCCTCATCGATGAG
CTCGACGTCCTCGTCGACGAGCCTGCTGCCGTTCGGTGGTGGGTCCTCCGGTGGCTTCCTCTCCTACCCTTCCACCTTCG
CCGGCGGGCATGGCGGCGACGGCGACATGGCGGAGGAGTTCCAGGAGGCGGACGTGCTGTGGCCGGACGACGGTTACGAG
CCGCGGGGGCGCGGCG---CCTACGGAGGGGAGCTCTGGTGGCTTTGCTGCGGCCTCGGTGGTGATGCCGCCGGCTACCA
CCGTGCGGGGCCTGCAGCTGGAGGTCAACGTCAAGCGTGGAGACCTCCGGTGTCGTCTCCGATCGATATCCCTACCGGAG
TTGCCA------CCGCCGCCGCTCGCCGCCGTCGCCCGGGGGTCGTGCTGGTGCACCGTCGATCGATAGGCACGGATTAA
TTAAGCTCGGCTAGCTGATGCTTTTGTTTCATTTCTTCCCCATTTTCGTTGGAAAATGGGGTGTTGTTCGATCGTGAGCA
AATTTTCTTGTAGTA---TATATAACTACGAATTACAGGCGAGAGGTGTTAGAAATCAGGAGCGCGAGTGTAGTAGTGAG
GAAAAGATATTGTTGGTGATATTTTTTCCCTATCGAAATGATAGTATGAGGAATGCA-----------------------
--AAAAATATATATTGGCAATGTGATTGTGATGGTACGAAGGGAATGTGGTCTTTTGCTGCTGGGGTGCACGTGCACTGT
GCACGAAGTCTCAAAGCTCACCAAATCCATGGATACTTTCCGCAGGGTTTGGCGGTCGATCCGCTGACCTTTTCGCGTCT
CGTCTCGATCGTTTT-CCTGATGAGCAGAGACGACGACCTGCAAGCTGCAATGC--------------------------
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>chr1A_33
GAGGAGAC----------------------------------TGACGCTCTGTGAC--TGAGTGATCCC---GAGAGTTT
GTGTTAGGCGG-AATTGATGGATATTTGTTATTATGTGATGTGAGGACTAATCCCAGCATTGACGGTCTACCGCTGGTTT
CTGGAAGCTCTGCACTTATGCTCTTAGAC-TTTTCGTTCGATTGGCTTTGGATTCTGTC------GTTTCTCACCCT--A
ATTTTGGTTCATCATCCGATTGCACTGTGGCCACGCAGGTAAGTATGGCAACTTGAAACTGCATTTTGCGTAGTTATTTG
ACCCTAACCCCTCCTAGAAATCTAAACTAT----------------------GGGTTAGGTGCAGCTAGCCCCTGACGG-
-----------------------AATCTAATTGCATATAAATAGGCAAATAAAACTGCCTGCACACTCCATTCAGGCGTG
AGCCGTGGCCAATCCT----GGGAGGATGACTTGCTGTGTGGGGCTCCCTAACCGCATCCCTTGTCCGCGTTACCCGGTC
AAGCATCATCCAGGTCGCGAATGATTGGTCGCCCACCGGATTAACCCGATCTGCCATTTCTTGTGCGCTTGCAACCGTCA
CTCCATCTCCAATCTTTTTTAGTAGTATTCCCCATCTA----TTGCAATCAAGCTCTCTCTTGTCCTAGAAGCAGATAAC
GATGTATATTTCTGCAAAAATCGCTGTCACTGACATATAGTGTGATGTATCAGTTTTGTTTCTTTCACAAGTATCGCGTA
GTTTGGTTTTGAATATGACCTGGCATTTCGTGGCCAACACAGAGCAGCACGTATGAGTCGATTGTT-AAAGTCCGCATTG
AACGGCATGAGGCGTCACGTACGTGTG----CGTAATCTGTCATTTTGCGGAGCGCTGCGCAGCTAGCCAAATTTAATCA
AGGCCAGGAGTGCCCCCTACGTCACGTCACCACACACGGCGATGCGACGCGCTTCTCTCTTGCGGCAAGGCGCGCGCAAC
CCATATTACAAGAATGGCTTGCCTGGCTGCTATCGGAGATAGTTTCCTGGCCCGAGGTGCGCCCATGGAGGAGCTCCAGG
AGGCCGACGTGCTGTGGCCCGACACGCCGCCGCCGTCGCGGGACCGCC---------TGCCGGATCAGCTGTACGATTCC
GCTGCCGCGGCCGCCGTCGACTTCTCGTGCGAGTCGTTCGGCAGCGACGACGACGGCCCTGCGGCGTCCTCGTCGATGAG
CTCGGCGTCCTCGTCGTCGACCGTGCTGCCGTTTGGTGGCGGGTCCTCCGGTGGCTTCCTCTCCTACCCTCCCGCCTCCG
CCGGCGGGCATGGCCGCGAGGGTGACATGGCGGAGGAGTTCCAGGAGGCGGACGTGCTGTGGCCCGACGACGGTTACGAG
CCGCGGGAGCGCGGCG---CCGACGGAGGGGAACTCTGGTGGCTTTGCTGCGGCTTCGGCGCTGACGCGGCCGGCTACCA
CCGCGTGGAGCCTGCAGCTGGAGGTCAACGTCAAGCGTGGAGACCTCCGGTGTCGTCTCCGATTGATATCCCTATCGGAC
TTGCTGCCGCCGCCGCCGCCGCACGCCGTCGTCGCGCGGGGACCTTGCTGGTGCACCGTCGATCGATAGGGACGG----G
TTAAGCTCAGCTAATCGATGCTTTTGTTTCATTTCTTCACCATTTTCGTTGGAAAATGGGGTGTTGTT-GATCGTGATCA
AATTTTCTTGTAGTATACTATATAACTACGAATTACGGGCGAGAGGTGTTAGAAATCAGGAGCGCGAGTGTAGTAGTGAG
GAAAAGATATTGTTGGTTATA-TTTTTCCCTATCGAAATGATAGTATGAGGAATGCA-----------------------
--AAAAATATATATTGGCAATGTGATTGTGATGGCACGCAGGGAATGTGGTCTTTTGCTGCCGGGGTGCACGTGCACTGT
GCACGAACTCTCAAACCGGACTAAATCCGTGGATACTTTTCGTAGGGTTTGGCGGTCGACCCGCTGACCTTTTCGCGTCT
CG-----ATCGTTTT-CCTGATGAGCAGAGACGACGACCTGCAAGCTGCAATGCAAGTTGCAG-----------------
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>SNPs
SSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------S------------SSS--------
-----------S--------------------------------------------------------------------
-----------------------------S------------------S----------------------------SS-
--S------------------S----------------------------------------------------------
------S--------S---------------------S-----------------------S-----------------S
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
----------------SSSS-------------------------------------S--------S-------------
---------S----------------------------------------------------------------------
-------------S----------------S-----SS----------------------S-------------------
------------------------------------S--------SS-S-------------------------------
------------------------------------------------------S-------SS--S----S--------
----S--------------------------------------------------------------------------S
S-------------------------------------------------------------------------------
------------------------------------------S-S---------------S-------------------
----------------------------------------------------SS----------S-S----S---SSS--
----S------------------------------------------------------S--------------------
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------------------SS-S---------------------------------------------------S----S-
S--S---------S--SSS-------------------------------------------------------------
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-----------------------------S-S--------------------------------S---------------
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-----------S--------------S-------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------S--S-----S--------------
-----------------------------S-------------S------------------------------------
---------------S-----------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_400
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------------------------------------------------------------TACAGCTAGCTCCTGACGGA
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>reverse_2216
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-------------------------------------------------------GAAGCCCCTCCTTTCGAACA-----
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