Multiple sequence alignment - TraesCS1B01G337400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G337400 chr1B 100.000 3628 0 0 1 3628 564906563 564910190 0.000000e+00 6700.0
1 TraesCS1B01G337400 chr1B 83.212 959 137 15 1991 2943 565371563 565372503 0.000000e+00 857.0
2 TraesCS1B01G337400 chr1B 84.715 386 45 6 3245 3628 565515442 565515815 1.230000e-99 374.0
3 TraesCS1B01G337400 chr1B 80.714 140 16 8 49 182 493706519 493706653 8.290000e-17 99.0
4 TraesCS1B01G337400 chr1D 91.293 3055 175 38 607 3628 418043684 418046680 0.000000e+00 4084.0
5 TraesCS1B01G337400 chr1A 91.676 2583 114 26 596 3128 514690006 514692537 0.000000e+00 3485.0
6 TraesCS1B01G337400 chr1A 89.619 472 29 4 3176 3628 514692533 514693003 1.880000e-162 582.0
7 TraesCS1B01G337400 chr1A 87.755 49 3 2 304 349 518601499 518601547 2.000000e-03 54.7
8 TraesCS1B01G337400 chr3B 82.836 134 11 7 49 182 204168061 204167940 3.830000e-20 110.0
9 TraesCS1B01G337400 chr5A 80.795 151 16 8 31 174 696474742 696474598 4.950000e-19 106.0
10 TraesCS1B01G337400 chr5A 88.312 77 8 1 204 279 455278180 455278104 1.390000e-14 91.6
11 TraesCS1B01G337400 chr5A 89.091 55 6 0 207 261 620993080 620993134 6.500000e-08 69.4
12 TraesCS1B01G337400 chr5A 88.462 52 5 1 230 280 422993192 422993141 1.090000e-05 62.1
13 TraesCS1B01G337400 chr5D 81.159 138 19 5 49 182 77346370 77346236 1.780000e-18 104.0
14 TraesCS1B01G337400 chr5D 80.435 138 20 5 49 182 354515081 354514947 8.290000e-17 99.0
15 TraesCS1B01G337400 chr2D 81.159 138 19 5 49 182 13620980 13620846 1.780000e-18 104.0
16 TraesCS1B01G337400 chr7D 80.435 138 20 5 49 182 119310277 119310411 8.290000e-17 99.0
17 TraesCS1B01G337400 chr7D 90.141 71 7 0 188 258 106321377 106321447 3.860000e-15 93.5
18 TraesCS1B01G337400 chr7D 94.737 38 2 0 14 51 357961272 357961235 3.910000e-05 60.2
19 TraesCS1B01G337400 chr7D 100.000 28 0 0 14 41 25579477 25579450 7.000000e-03 52.8
20 TraesCS1B01G337400 chr6D 80.435 138 20 5 49 182 461428320 461428454 8.290000e-17 99.0
21 TraesCS1B01G337400 chr3D 80.435 138 20 5 49 182 96843259 96843393 8.290000e-17 99.0
22 TraesCS1B01G337400 chr3D 89.189 74 8 0 188 261 3220286 3220213 3.860000e-15 93.5
23 TraesCS1B01G337400 chr2B 80.435 138 17 9 50 182 41115726 41115594 2.980000e-16 97.1
24 TraesCS1B01G337400 chr2B 88.312 77 8 1 186 261 687211326 687211250 1.390000e-14 91.6
25 TraesCS1B01G337400 chr2B 91.489 47 2 2 7 51 231315711 231315665 3.020000e-06 63.9
26 TraesCS1B01G337400 chr2B 88.889 45 5 0 188 232 420199110 420199154 5.060000e-04 56.5
27 TraesCS1B01G337400 chr4D 88.732 71 8 0 188 258 27156435 27156505 1.790000e-13 87.9
28 TraesCS1B01G337400 chr6B 94.231 52 3 0 227 278 255277379 255277328 3.000000e-11 80.5
29 TraesCS1B01G337400 chr6B 94.595 37 1 1 1 36 9922287 9922323 5.060000e-04 56.5
30 TraesCS1B01G337400 chr6A 92.453 53 3 1 228 279 16597262 16597314 1.400000e-09 75.0
31 TraesCS1B01G337400 chr6A 90.909 44 2 2 8 49 413107385 413107342 1.410000e-04 58.4
32 TraesCS1B01G337400 chr4B 93.182 44 3 0 275 318 7853211 7853168 8.410000e-07 65.8
33 TraesCS1B01G337400 chr4B 91.489 47 4 0 277 323 221206081 221206035 8.410000e-07 65.8
34 TraesCS1B01G337400 chr5B 89.796 49 3 2 8 54 659626906 659626954 1.090000e-05 62.1
35 TraesCS1B01G337400 chr2A 89.362 47 3 2 7 51 288283162 288283116 1.410000e-04 58.4
36 TraesCS1B01G337400 chr7B 96.970 33 0 1 277 308 526420058 526420090 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G337400 chr1B 564906563 564910190 3627 False 6700.0 6700 100.0000 1 3628 1 chr1B.!!$F2 3627
1 TraesCS1B01G337400 chr1B 565371563 565372503 940 False 857.0 857 83.2120 1991 2943 1 chr1B.!!$F3 952
2 TraesCS1B01G337400 chr1D 418043684 418046680 2996 False 4084.0 4084 91.2930 607 3628 1 chr1D.!!$F1 3021
3 TraesCS1B01G337400 chr1A 514690006 514693003 2997 False 2033.5 3485 90.6475 596 3628 2 chr1A.!!$F2 3032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 555 0.108138 GAAGCTGTACTGTCCGGCAT 60.108 55.0 6.96 0.0 36.64 4.40 F
555 556 0.108138 AAGCTGTACTGTCCGGCATC 60.108 55.0 6.96 0.0 36.64 3.91 F
1866 1936 0.243907 TCTACAAGGTGCGTCTCAGC 59.756 55.0 0.00 0.0 43.25 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2378 2460 0.389757 GAAGTAGGACATCCCCGAGC 59.610 60.0 0.0 0.0 36.42 5.03 R
2383 2465 1.112113 TCTGCGAAGTAGGACATCCC 58.888 55.0 0.0 0.0 41.75 3.85 R
3339 3440 0.036875 GCTAGGTTGCCAAGTCCACT 59.963 55.0 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.869667 ATCATACACTAGTATATGATACTCCCC 57.130 37.037 27.59 0.00 43.53 4.81
35 36 8.842764 TCATACACTAGTATATGATACTCCCCA 58.157 37.037 17.93 0.00 38.88 4.96
36 37 8.904834 CATACACTAGTATATGATACTCCCCAC 58.095 40.741 14.83 0.00 38.88 4.61
37 38 7.104974 ACACTAGTATATGATACTCCCCACT 57.895 40.000 0.00 0.00 0.00 4.00
38 39 8.228353 ACACTAGTATATGATACTCCCCACTA 57.772 38.462 0.00 0.00 0.00 2.74
39 40 8.847816 ACACTAGTATATGATACTCCCCACTAT 58.152 37.037 0.00 0.00 0.00 2.12
40 41 9.126151 CACTAGTATATGATACTCCCCACTATG 57.874 40.741 0.00 0.00 0.00 2.23
41 42 8.282982 ACTAGTATATGATACTCCCCACTATGG 58.717 40.741 0.00 0.00 37.25 2.74
51 52 3.713902 CCACTATGGGCAGCCTTAG 57.286 57.895 12.43 14.86 32.67 2.18
52 53 1.131638 CCACTATGGGCAGCCTTAGA 58.868 55.000 21.87 6.26 32.67 2.10
53 54 1.071385 CCACTATGGGCAGCCTTAGAG 59.929 57.143 21.87 15.68 32.67 2.43
54 55 1.765314 CACTATGGGCAGCCTTAGAGT 59.235 52.381 21.87 16.21 0.00 3.24
55 56 2.965831 CACTATGGGCAGCCTTAGAGTA 59.034 50.000 21.87 4.23 0.00 2.59
56 57 3.388024 CACTATGGGCAGCCTTAGAGTAA 59.612 47.826 21.87 0.00 0.00 2.24
57 58 3.388350 ACTATGGGCAGCCTTAGAGTAAC 59.612 47.826 21.87 1.11 0.00 2.50
58 59 1.651737 TGGGCAGCCTTAGAGTAACA 58.348 50.000 12.43 0.00 0.00 2.41
59 60 2.196595 TGGGCAGCCTTAGAGTAACAT 58.803 47.619 12.43 0.00 0.00 2.71
60 61 3.380393 TGGGCAGCCTTAGAGTAACATA 58.620 45.455 12.43 0.00 0.00 2.29
61 62 3.388024 TGGGCAGCCTTAGAGTAACATAG 59.612 47.826 12.43 0.00 0.00 2.23
62 63 3.641906 GGGCAGCCTTAGAGTAACATAGA 59.358 47.826 12.43 0.00 0.00 1.98
63 64 4.284746 GGGCAGCCTTAGAGTAACATAGAT 59.715 45.833 12.43 0.00 0.00 1.98
64 65 5.480772 GGGCAGCCTTAGAGTAACATAGATA 59.519 44.000 12.43 0.00 0.00 1.98
65 66 6.350612 GGGCAGCCTTAGAGTAACATAGATAG 60.351 46.154 12.43 0.00 0.00 2.08
66 67 6.434652 GGCAGCCTTAGAGTAACATAGATAGA 59.565 42.308 3.29 0.00 0.00 1.98
67 68 7.123547 GGCAGCCTTAGAGTAACATAGATAGAT 59.876 40.741 3.29 0.00 0.00 1.98
68 69 9.179909 GCAGCCTTAGAGTAACATAGATAGATA 57.820 37.037 0.00 0.00 0.00 1.98
70 71 9.689501 AGCCTTAGAGTAACATAGATAGATACC 57.310 37.037 0.00 0.00 0.00 2.73
71 72 9.463902 GCCTTAGAGTAACATAGATAGATACCA 57.536 37.037 0.00 0.00 0.00 3.25
107 108 9.944376 AAATGATGTAGTACTACTTTGTGTCAT 57.056 29.630 28.56 22.22 37.00 3.06
108 109 8.932945 ATGATGTAGTACTACTTTGTGTCATG 57.067 34.615 28.56 0.00 37.00 3.07
109 110 6.811665 TGATGTAGTACTACTTTGTGTCATGC 59.188 38.462 28.56 11.36 37.00 4.06
110 111 6.091718 TGTAGTACTACTTTGTGTCATGCA 57.908 37.500 28.56 5.87 37.00 3.96
111 112 6.697395 TGTAGTACTACTTTGTGTCATGCAT 58.303 36.000 28.56 0.00 37.00 3.96
112 113 6.589907 TGTAGTACTACTTTGTGTCATGCATG 59.410 38.462 28.56 21.07 37.00 4.06
113 114 4.937620 AGTACTACTTTGTGTCATGCATGG 59.062 41.667 25.97 10.76 0.00 3.66
114 115 3.754965 ACTACTTTGTGTCATGCATGGT 58.245 40.909 25.97 15.83 0.00 3.55
115 116 3.753272 ACTACTTTGTGTCATGCATGGTC 59.247 43.478 25.97 18.71 0.00 4.02
116 117 2.585330 ACTTTGTGTCATGCATGGTCA 58.415 42.857 25.97 20.86 0.00 4.02
117 118 2.294233 ACTTTGTGTCATGCATGGTCAC 59.706 45.455 30.36 30.36 35.42 3.67
118 119 1.978454 TTGTGTCATGCATGGTCACA 58.022 45.000 33.13 33.13 39.31 3.58
119 120 1.978454 TGTGTCATGCATGGTCACAA 58.022 45.000 33.90 24.54 38.72 3.33
120 121 2.305009 TGTGTCATGCATGGTCACAAA 58.695 42.857 33.90 22.83 38.72 2.83
121 122 2.892215 TGTGTCATGCATGGTCACAAAT 59.108 40.909 33.90 0.48 38.72 2.32
122 123 4.077822 TGTGTCATGCATGGTCACAAATA 58.922 39.130 33.90 21.80 38.72 1.40
123 124 4.522022 TGTGTCATGCATGGTCACAAATAA 59.478 37.500 33.90 21.56 38.72 1.40
124 125 5.185442 TGTGTCATGCATGGTCACAAATAAT 59.815 36.000 33.90 0.00 38.72 1.28
125 126 6.101332 GTGTCATGCATGGTCACAAATAATT 58.899 36.000 31.21 0.00 35.18 1.40
126 127 7.094032 TGTGTCATGCATGGTCACAAATAATTA 60.094 33.333 33.90 20.17 38.72 1.40
127 128 7.758980 GTGTCATGCATGGTCACAAATAATTAA 59.241 33.333 31.21 9.33 35.18 1.40
128 129 7.975058 TGTCATGCATGGTCACAAATAATTAAG 59.025 33.333 25.97 0.00 0.00 1.85
129 130 8.190122 GTCATGCATGGTCACAAATAATTAAGA 58.810 33.333 25.97 0.00 0.00 2.10
130 131 8.916062 TCATGCATGGTCACAAATAATTAAGAT 58.084 29.630 25.97 0.00 0.00 2.40
131 132 9.188588 CATGCATGGTCACAAATAATTAAGATC 57.811 33.333 19.40 0.00 0.00 2.75
132 133 8.291191 TGCATGGTCACAAATAATTAAGATCA 57.709 30.769 0.00 0.00 0.00 2.92
133 134 8.916062 TGCATGGTCACAAATAATTAAGATCAT 58.084 29.630 0.00 0.00 0.00 2.45
134 135 9.403110 GCATGGTCACAAATAATTAAGATCATC 57.597 33.333 0.00 0.00 0.00 2.92
176 177 8.422577 ACACTATGAAGGTAGTATCATATGCA 57.577 34.615 0.00 0.00 37.76 3.96
177 178 9.040259 ACACTATGAAGGTAGTATCATATGCAT 57.960 33.333 3.79 3.79 37.76 3.96
178 179 9.310716 CACTATGAAGGTAGTATCATATGCATG 57.689 37.037 10.16 0.00 37.76 4.06
179 180 9.259832 ACTATGAAGGTAGTATCATATGCATGA 57.740 33.333 10.16 0.00 45.15 3.07
212 213 6.994421 AAAACTTGTCCCTTAAATGGATGT 57.006 33.333 0.00 0.00 33.65 3.06
213 214 8.485578 AAAAACTTGTCCCTTAAATGGATGTA 57.514 30.769 0.00 0.00 33.65 2.29
214 215 7.462571 AAACTTGTCCCTTAAATGGATGTAC 57.537 36.000 0.00 0.00 33.65 2.90
215 216 5.506708 ACTTGTCCCTTAAATGGATGTACC 58.493 41.667 0.00 0.00 33.65 3.34
216 217 5.253096 ACTTGTCCCTTAAATGGATGTACCT 59.747 40.000 0.00 0.00 39.86 3.08
217 218 6.445786 ACTTGTCCCTTAAATGGATGTACCTA 59.554 38.462 0.00 0.00 39.86 3.08
218 219 6.494666 TGTCCCTTAAATGGATGTACCTAG 57.505 41.667 0.00 0.00 39.86 3.02
219 220 5.163237 TGTCCCTTAAATGGATGTACCTAGC 60.163 44.000 0.00 0.00 39.86 3.42
220 221 4.972568 TCCCTTAAATGGATGTACCTAGCA 59.027 41.667 0.00 0.00 39.86 3.49
221 222 5.610982 TCCCTTAAATGGATGTACCTAGCAT 59.389 40.000 0.00 0.00 39.86 3.79
222 223 6.790461 TCCCTTAAATGGATGTACCTAGCATA 59.210 38.462 0.00 0.00 39.86 3.14
223 224 7.293771 TCCCTTAAATGGATGTACCTAGCATAA 59.706 37.037 0.00 0.00 39.86 1.90
224 225 7.942341 CCCTTAAATGGATGTACCTAGCATAAA 59.058 37.037 0.00 0.00 39.86 1.40
225 226 8.784043 CCTTAAATGGATGTACCTAGCATAAAC 58.216 37.037 0.00 0.00 39.86 2.01
226 227 9.561069 CTTAAATGGATGTACCTAGCATAAACT 57.439 33.333 0.00 0.00 39.86 2.66
227 228 9.914834 TTAAATGGATGTACCTAGCATAAACTT 57.085 29.630 0.00 0.00 39.86 2.66
228 229 7.807977 AATGGATGTACCTAGCATAAACTTG 57.192 36.000 0.00 0.00 39.86 3.16
229 230 5.680619 TGGATGTACCTAGCATAAACTTGG 58.319 41.667 0.00 0.00 39.86 3.61
230 231 5.190925 TGGATGTACCTAGCATAAACTTGGT 59.809 40.000 3.32 3.32 45.81 3.67
231 232 5.527582 GGATGTACCTAGCATAAACTTGGTG 59.472 44.000 7.74 0.00 44.11 4.17
232 233 4.258543 TGTACCTAGCATAAACTTGGTGC 58.741 43.478 7.74 7.03 44.11 5.01
234 235 4.837093 ACCTAGCATAAACTTGGTGCTA 57.163 40.909 6.20 6.20 46.54 3.49
243 244 9.442047 AGCATAAACTTGGTGCTAGATATATTC 57.558 33.333 0.00 0.00 46.54 1.75
244 245 9.219603 GCATAAACTTGGTGCTAGATATATTCA 57.780 33.333 0.00 0.00 36.02 2.57
249 250 9.851686 AACTTGGTGCTAGATATATTCATTTGA 57.148 29.630 0.00 0.00 0.00 2.69
250 251 9.499479 ACTTGGTGCTAGATATATTCATTTGAG 57.501 33.333 0.00 0.00 0.00 3.02
251 252 8.853077 TTGGTGCTAGATATATTCATTTGAGG 57.147 34.615 0.00 0.00 0.00 3.86
252 253 7.397221 TGGTGCTAGATATATTCATTTGAGGG 58.603 38.462 0.00 0.00 0.00 4.30
253 254 7.237471 TGGTGCTAGATATATTCATTTGAGGGA 59.763 37.037 0.00 0.00 0.00 4.20
254 255 7.550906 GGTGCTAGATATATTCATTTGAGGGAC 59.449 40.741 0.00 0.00 0.00 4.46
255 256 8.097038 GTGCTAGATATATTCATTTGAGGGACA 58.903 37.037 0.00 0.00 0.00 4.02
256 257 8.659527 TGCTAGATATATTCATTTGAGGGACAA 58.340 33.333 0.00 0.00 36.65 3.18
257 258 9.160496 GCTAGATATATTCATTTGAGGGACAAG 57.840 37.037 0.00 0.00 39.77 3.16
260 261 9.927081 AGATATATTCATTTGAGGGACAAGTTT 57.073 29.630 0.00 0.00 39.77 2.66
282 283 5.531122 TTTTGGACGGAGAGAGTATATGG 57.469 43.478 0.00 0.00 0.00 2.74
283 284 3.878237 TGGACGGAGAGAGTATATGGT 57.122 47.619 0.00 0.00 0.00 3.55
284 285 4.987963 TGGACGGAGAGAGTATATGGTA 57.012 45.455 0.00 0.00 0.00 3.25
285 286 4.649692 TGGACGGAGAGAGTATATGGTAC 58.350 47.826 0.00 0.00 0.00 3.34
286 287 4.350225 TGGACGGAGAGAGTATATGGTACT 59.650 45.833 0.00 0.00 0.00 2.73
287 288 4.937015 GGACGGAGAGAGTATATGGTACTC 59.063 50.000 10.51 10.51 43.08 2.59
288 289 4.909001 ACGGAGAGAGTATATGGTACTCC 58.091 47.826 13.45 0.00 43.61 3.85
289 290 4.263418 ACGGAGAGAGTATATGGTACTCCC 60.263 50.000 13.45 8.89 43.61 4.30
290 291 4.602107 GGAGAGAGTATATGGTACTCCCC 58.398 52.174 13.45 10.14 43.61 4.81
291 292 4.044317 GGAGAGAGTATATGGTACTCCCCA 59.956 50.000 13.45 0.00 43.61 4.96
292 293 5.000570 AGAGAGTATATGGTACTCCCCAC 57.999 47.826 13.45 6.41 43.61 4.61
293 294 4.670727 AGAGAGTATATGGTACTCCCCACT 59.329 45.833 13.45 7.89 43.61 4.00
294 295 5.856160 AGAGAGTATATGGTACTCCCCACTA 59.144 44.000 13.45 0.00 43.61 2.74
295 296 6.509640 AGAGAGTATATGGTACTCCCCACTAT 59.490 42.308 13.45 0.00 43.61 2.12
296 297 6.494952 AGAGTATATGGTACTCCCCACTATG 58.505 44.000 13.45 0.00 43.61 2.23
297 298 6.277283 AGAGTATATGGTACTCCCCACTATGA 59.723 42.308 13.45 0.00 43.61 2.15
298 299 6.494952 AGTATATGGTACTCCCCACTATGAG 58.505 44.000 0.00 0.00 37.31 2.90
299 300 3.708236 ATGGTACTCCCCACTATGAGT 57.292 47.619 0.00 0.00 43.85 3.41
300 301 4.827036 ATGGTACTCCCCACTATGAGTA 57.173 45.455 0.00 0.00 41.80 2.59
301 302 4.180377 TGGTACTCCCCACTATGAGTAG 57.820 50.000 0.00 0.00 42.92 2.57
303 304 2.089600 ACTCCCCACTATGAGTAGCC 57.910 55.000 0.00 0.00 39.96 3.93
304 305 1.576272 ACTCCCCACTATGAGTAGCCT 59.424 52.381 0.00 0.00 39.96 4.58
305 306 2.789992 ACTCCCCACTATGAGTAGCCTA 59.210 50.000 0.00 0.00 39.96 3.93
306 307 3.206866 ACTCCCCACTATGAGTAGCCTAA 59.793 47.826 0.00 0.00 39.96 2.69
307 308 3.829601 CTCCCCACTATGAGTAGCCTAAG 59.170 52.174 0.00 0.00 0.00 2.18
308 309 3.465966 TCCCCACTATGAGTAGCCTAAGA 59.534 47.826 0.00 0.00 0.00 2.10
309 310 3.829601 CCCCACTATGAGTAGCCTAAGAG 59.170 52.174 0.00 0.00 0.00 2.85
310 311 3.257127 CCCACTATGAGTAGCCTAAGAGC 59.743 52.174 0.00 0.00 0.00 4.09
311 312 3.891977 CCACTATGAGTAGCCTAAGAGCA 59.108 47.826 0.00 0.00 34.23 4.26
312 313 4.526262 CCACTATGAGTAGCCTAAGAGCAT 59.474 45.833 0.00 0.00 34.23 3.79
313 314 5.468592 CACTATGAGTAGCCTAAGAGCATG 58.531 45.833 0.00 0.00 34.23 4.06
314 315 5.010516 CACTATGAGTAGCCTAAGAGCATGT 59.989 44.000 0.00 0.00 34.23 3.21
315 316 4.599047 ATGAGTAGCCTAAGAGCATGTC 57.401 45.455 0.00 0.00 34.23 3.06
316 317 2.695666 TGAGTAGCCTAAGAGCATGTCC 59.304 50.000 0.00 0.00 34.23 4.02
317 318 2.695666 GAGTAGCCTAAGAGCATGTCCA 59.304 50.000 0.00 0.00 34.23 4.02
318 319 3.107601 AGTAGCCTAAGAGCATGTCCAA 58.892 45.455 0.00 0.00 34.23 3.53
319 320 2.409948 AGCCTAAGAGCATGTCCAAC 57.590 50.000 0.00 0.00 34.23 3.77
320 321 1.630369 AGCCTAAGAGCATGTCCAACA 59.370 47.619 0.00 0.00 34.23 3.33
321 322 2.012673 GCCTAAGAGCATGTCCAACAG 58.987 52.381 0.00 0.00 0.00 3.16
322 323 2.636830 CCTAAGAGCATGTCCAACAGG 58.363 52.381 0.00 0.00 32.28 4.00
326 327 4.120331 GCATGTCCAACAGGCGCC 62.120 66.667 21.89 21.89 46.04 6.53
327 328 3.443045 CATGTCCAACAGGCGCCC 61.443 66.667 26.15 6.18 0.00 6.13
328 329 3.965258 ATGTCCAACAGGCGCCCA 61.965 61.111 26.15 12.84 0.00 5.36
329 330 3.505790 ATGTCCAACAGGCGCCCAA 62.506 57.895 26.15 0.00 0.00 4.12
330 331 2.909965 GTCCAACAGGCGCCCAAA 60.910 61.111 26.15 0.00 0.00 3.28
331 332 2.123683 TCCAACAGGCGCCCAAAA 60.124 55.556 26.15 0.41 0.00 2.44
332 333 1.532794 TCCAACAGGCGCCCAAAAT 60.533 52.632 26.15 0.00 0.00 1.82
333 334 1.118356 TCCAACAGGCGCCCAAAATT 61.118 50.000 26.15 7.68 0.00 1.82
334 335 0.250252 CCAACAGGCGCCCAAAATTT 60.250 50.000 26.15 0.00 0.00 1.82
335 336 1.592064 CAACAGGCGCCCAAAATTTT 58.408 45.000 26.15 0.00 0.00 1.82
336 337 1.530720 CAACAGGCGCCCAAAATTTTC 59.469 47.619 26.15 0.00 0.00 2.29
337 338 0.755686 ACAGGCGCCCAAAATTTTCA 59.244 45.000 26.15 0.00 0.00 2.69
338 339 1.347378 ACAGGCGCCCAAAATTTTCAT 59.653 42.857 26.15 0.00 0.00 2.57
339 340 1.733360 CAGGCGCCCAAAATTTTCATG 59.267 47.619 26.15 6.11 0.00 3.07
340 341 0.447406 GGCGCCCAAAATTTTCATGC 59.553 50.000 18.11 3.38 0.00 4.06
341 342 0.447406 GCGCCCAAAATTTTCATGCC 59.553 50.000 0.00 0.00 0.00 4.40
342 343 1.085893 CGCCCAAAATTTTCATGCCC 58.914 50.000 0.00 0.00 0.00 5.36
343 344 1.338960 CGCCCAAAATTTTCATGCCCT 60.339 47.619 0.00 0.00 0.00 5.19
344 345 2.093764 CGCCCAAAATTTTCATGCCCTA 60.094 45.455 0.00 0.00 0.00 3.53
345 346 3.618507 CGCCCAAAATTTTCATGCCCTAA 60.619 43.478 0.00 0.00 0.00 2.69
346 347 4.331108 GCCCAAAATTTTCATGCCCTAAA 58.669 39.130 0.00 0.00 0.00 1.85
347 348 4.764308 GCCCAAAATTTTCATGCCCTAAAA 59.236 37.500 0.00 0.00 0.00 1.52
348 349 5.418524 GCCCAAAATTTTCATGCCCTAAAAT 59.581 36.000 0.00 0.00 36.98 1.82
349 350 6.601217 GCCCAAAATTTTCATGCCCTAAAATA 59.399 34.615 0.00 0.00 34.93 1.40
350 351 7.201723 GCCCAAAATTTTCATGCCCTAAAATAG 60.202 37.037 0.00 0.00 34.93 1.73
351 352 7.828717 CCCAAAATTTTCATGCCCTAAAATAGT 59.171 33.333 0.00 0.00 34.93 2.12
352 353 9.230122 CCAAAATTTTCATGCCCTAAAATAGTT 57.770 29.630 0.00 0.76 34.93 2.24
358 359 8.973835 TTTCATGCCCTAAAATAGTTTTAACG 57.026 30.769 0.00 0.00 34.93 3.18
359 360 6.557110 TCATGCCCTAAAATAGTTTTAACGC 58.443 36.000 0.00 2.72 34.93 4.84
360 361 4.972201 TGCCCTAAAATAGTTTTAACGCG 58.028 39.130 3.53 3.53 34.93 6.01
361 362 3.787634 GCCCTAAAATAGTTTTAACGCGC 59.212 43.478 5.73 0.00 34.93 6.86
362 363 4.672283 GCCCTAAAATAGTTTTAACGCGCA 60.672 41.667 5.73 0.00 34.93 6.09
363 364 5.392286 CCCTAAAATAGTTTTAACGCGCAA 58.608 37.500 5.73 0.00 34.93 4.85
364 365 5.284424 CCCTAAAATAGTTTTAACGCGCAAC 59.716 40.000 5.73 3.46 34.93 4.17
365 366 6.081693 CCTAAAATAGTTTTAACGCGCAACT 58.918 36.000 5.73 11.82 34.93 3.16
366 367 5.799542 AAAATAGTTTTAACGCGCAACTG 57.200 34.783 17.50 0.00 32.88 3.16
367 368 4.477302 AATAGTTTTAACGCGCAACTGT 57.523 36.364 17.50 9.97 32.88 3.55
368 369 5.594724 AATAGTTTTAACGCGCAACTGTA 57.405 34.783 17.50 2.19 32.88 2.74
369 370 3.515071 AGTTTTAACGCGCAACTGTAG 57.485 42.857 5.73 0.00 29.36 2.74
370 371 1.967235 GTTTTAACGCGCAACTGTAGC 59.033 47.619 5.73 0.00 0.00 3.58
371 372 1.218763 TTTAACGCGCAACTGTAGCA 58.781 45.000 5.73 0.00 0.00 3.49
372 373 0.787787 TTAACGCGCAACTGTAGCAG 59.212 50.000 5.73 0.00 37.52 4.24
382 383 1.068474 ACTGTAGCAGTTTAAGCGCG 58.932 50.000 0.00 0.00 42.59 6.86
383 384 0.247301 CTGTAGCAGTTTAAGCGCGC 60.247 55.000 26.66 26.66 37.01 6.86
384 385 1.060465 GTAGCAGTTTAAGCGCGCC 59.940 57.895 30.33 12.43 37.01 6.53
385 386 2.449525 TAGCAGTTTAAGCGCGCCG 61.450 57.895 30.33 8.75 37.01 6.46
386 387 4.811761 GCAGTTTAAGCGCGCCGG 62.812 66.667 30.33 13.91 0.00 6.13
387 388 3.115892 CAGTTTAAGCGCGCCGGA 61.116 61.111 30.33 10.76 0.00 5.14
388 389 3.116531 AGTTTAAGCGCGCCGGAC 61.117 61.111 30.33 20.76 0.00 4.79
389 390 4.156622 GTTTAAGCGCGCCGGACC 62.157 66.667 30.33 9.91 0.00 4.46
397 398 4.114997 GCGCCGGACCCAACATTG 62.115 66.667 5.05 0.00 0.00 2.82
398 399 2.671619 CGCCGGACCCAACATTGT 60.672 61.111 5.05 0.00 0.00 2.71
399 400 2.265182 CGCCGGACCCAACATTGTT 61.265 57.895 5.05 0.00 0.00 2.83
400 401 1.801309 CGCCGGACCCAACATTGTTT 61.801 55.000 5.05 0.00 0.00 2.83
401 402 0.391228 GCCGGACCCAACATTGTTTT 59.609 50.000 5.05 0.00 0.00 2.43
402 403 1.614413 GCCGGACCCAACATTGTTTTA 59.386 47.619 5.05 0.00 0.00 1.52
403 404 2.232696 GCCGGACCCAACATTGTTTTAT 59.767 45.455 5.05 0.00 0.00 1.40
404 405 3.674955 GCCGGACCCAACATTGTTTTATC 60.675 47.826 5.05 0.00 0.00 1.75
405 406 3.508012 CCGGACCCAACATTGTTTTATCA 59.492 43.478 0.00 0.00 0.00 2.15
406 407 4.159506 CCGGACCCAACATTGTTTTATCAT 59.840 41.667 0.00 0.00 0.00 2.45
407 408 5.358442 CCGGACCCAACATTGTTTTATCATA 59.642 40.000 0.00 0.00 0.00 2.15
408 409 6.040391 CCGGACCCAACATTGTTTTATCATAT 59.960 38.462 0.00 0.00 0.00 1.78
409 410 6.917477 CGGACCCAACATTGTTTTATCATATG 59.083 38.462 0.00 0.00 0.00 1.78
410 411 6.701400 GGACCCAACATTGTTTTATCATATGC 59.299 38.462 0.00 0.00 0.00 3.14
411 412 6.581712 ACCCAACATTGTTTTATCATATGCC 58.418 36.000 0.00 0.00 0.00 4.40
412 413 5.990996 CCCAACATTGTTTTATCATATGCCC 59.009 40.000 0.00 0.00 0.00 5.36
413 414 6.407865 CCCAACATTGTTTTATCATATGCCCA 60.408 38.462 0.00 0.00 0.00 5.36
414 415 7.046652 CCAACATTGTTTTATCATATGCCCAA 58.953 34.615 0.00 0.00 0.00 4.12
415 416 7.551974 CCAACATTGTTTTATCATATGCCCAAA 59.448 33.333 0.00 0.00 0.00 3.28
416 417 8.944029 CAACATTGTTTTATCATATGCCCAAAA 58.056 29.630 0.00 1.86 0.00 2.44
417 418 9.512588 AACATTGTTTTATCATATGCCCAAAAA 57.487 25.926 0.00 0.00 0.00 1.94
418 419 8.945057 ACATTGTTTTATCATATGCCCAAAAAC 58.055 29.630 18.07 18.07 37.34 2.43
419 420 8.944029 CATTGTTTTATCATATGCCCAAAAACA 58.056 29.630 20.90 20.90 42.08 2.83
420 421 7.897575 TGTTTTATCATATGCCCAAAAACAC 57.102 32.000 20.90 9.49 40.14 3.32
421 422 7.445121 TGTTTTATCATATGCCCAAAAACACA 58.555 30.769 20.90 11.05 40.14 3.72
422 423 7.386299 TGTTTTATCATATGCCCAAAAACACAC 59.614 33.333 20.90 9.04 40.14 3.82
423 424 6.596309 TTATCATATGCCCAAAAACACACA 57.404 33.333 0.00 0.00 0.00 3.72
424 425 4.517952 TCATATGCCCAAAAACACACAG 57.482 40.909 0.00 0.00 0.00 3.66
425 426 3.894427 TCATATGCCCAAAAACACACAGT 59.106 39.130 0.00 0.00 0.00 3.55
426 427 2.600470 ATGCCCAAAAACACACAGTG 57.400 45.000 0.00 0.00 39.75 3.66
428 429 2.447443 TGCCCAAAAACACACAGTGTA 58.553 42.857 5.69 0.00 46.79 2.90
429 430 2.826128 TGCCCAAAAACACACAGTGTAA 59.174 40.909 5.69 0.00 46.79 2.41
430 431 3.258372 TGCCCAAAAACACACAGTGTAAA 59.742 39.130 5.69 0.00 46.79 2.01
431 432 4.081420 TGCCCAAAAACACACAGTGTAAAT 60.081 37.500 5.69 0.00 46.79 1.40
432 433 4.873259 GCCCAAAAACACACAGTGTAAATT 59.127 37.500 5.69 0.00 46.79 1.82
433 434 5.220567 GCCCAAAAACACACAGTGTAAATTG 60.221 40.000 5.69 9.31 46.79 2.32
434 435 5.872070 CCCAAAAACACACAGTGTAAATTGT 59.128 36.000 5.69 0.00 46.79 2.71
435 436 6.183360 CCCAAAAACACACAGTGTAAATTGTG 60.183 38.462 5.69 6.98 46.79 3.33
436 437 6.587990 CCAAAAACACACAGTGTAAATTGTGA 59.412 34.615 14.96 0.00 46.79 3.58
437 438 7.116948 CCAAAAACACACAGTGTAAATTGTGAA 59.883 33.333 14.96 0.00 46.79 3.18
438 439 8.491152 CAAAAACACACAGTGTAAATTGTGAAA 58.509 29.630 14.96 0.00 46.79 2.69
439 440 7.575332 AAACACACAGTGTAAATTGTGAAAC 57.425 32.000 14.96 0.00 46.79 2.78
440 441 5.328691 ACACACAGTGTAAATTGTGAAACG 58.671 37.500 14.96 3.72 45.56 3.60
441 442 5.106475 ACACACAGTGTAAATTGTGAAACGT 60.106 36.000 14.96 4.26 45.56 3.99
442 443 5.226978 CACACAGTGTAAATTGTGAAACGTG 59.773 40.000 14.96 0.00 45.79 4.49
443 444 5.106475 ACACAGTGTAAATTGTGAAACGTGT 60.106 36.000 14.96 0.00 45.79 4.49
444 445 5.226978 CACAGTGTAAATTGTGAAACGTGTG 59.773 40.000 2.38 0.00 45.79 3.82
445 446 4.204168 CAGTGTAAATTGTGAAACGTGTGC 59.796 41.667 0.00 0.00 42.39 4.57
446 447 4.099120 GTGTAAATTGTGAAACGTGTGCA 58.901 39.130 0.00 0.00 42.39 4.57
447 448 4.559251 GTGTAAATTGTGAAACGTGTGCAA 59.441 37.500 0.00 0.00 42.39 4.08
448 449 5.231147 GTGTAAATTGTGAAACGTGTGCAAT 59.769 36.000 0.00 0.00 42.39 3.56
449 450 5.457148 TGTAAATTGTGAAACGTGTGCAATC 59.543 36.000 5.81 0.00 42.39 2.67
450 451 2.483583 TTGTGAAACGTGTGCAATCC 57.516 45.000 0.00 0.00 42.39 3.01
451 452 1.383523 TGTGAAACGTGTGCAATCCA 58.616 45.000 0.00 0.00 42.39 3.41
452 453 1.064803 TGTGAAACGTGTGCAATCCAC 59.935 47.619 0.00 0.00 42.39 4.02
453 454 0.665835 TGAAACGTGTGCAATCCACC 59.334 50.000 0.00 0.00 44.01 4.61
454 455 0.385473 GAAACGTGTGCAATCCACCG 60.385 55.000 0.00 0.00 44.01 4.94
455 456 2.400896 AAACGTGTGCAATCCACCGC 62.401 55.000 0.00 0.00 44.01 5.68
456 457 4.101790 CGTGTGCAATCCACCGCC 62.102 66.667 0.00 0.00 44.01 6.13
457 458 2.672996 GTGTGCAATCCACCGCCT 60.673 61.111 0.00 0.00 44.01 5.52
458 459 2.359850 TGTGCAATCCACCGCCTC 60.360 61.111 0.00 0.00 44.01 4.70
459 460 2.359850 GTGCAATCCACCGCCTCA 60.360 61.111 0.00 0.00 38.55 3.86
460 461 1.971167 GTGCAATCCACCGCCTCAA 60.971 57.895 0.00 0.00 38.55 3.02
461 462 1.228398 TGCAATCCACCGCCTCAAA 60.228 52.632 0.00 0.00 0.00 2.69
462 463 0.611618 TGCAATCCACCGCCTCAAAT 60.612 50.000 0.00 0.00 0.00 2.32
463 464 0.532115 GCAATCCACCGCCTCAAATT 59.468 50.000 0.00 0.00 0.00 1.82
464 465 1.066929 GCAATCCACCGCCTCAAATTT 60.067 47.619 0.00 0.00 0.00 1.82
465 466 2.165437 GCAATCCACCGCCTCAAATTTA 59.835 45.455 0.00 0.00 0.00 1.40
466 467 3.769536 CAATCCACCGCCTCAAATTTAC 58.230 45.455 0.00 0.00 0.00 2.01
467 468 2.570415 TCCACCGCCTCAAATTTACA 57.430 45.000 0.00 0.00 0.00 2.41
468 469 2.432444 TCCACCGCCTCAAATTTACAG 58.568 47.619 0.00 0.00 0.00 2.74
469 470 1.135402 CCACCGCCTCAAATTTACAGC 60.135 52.381 0.00 0.00 0.00 4.40
470 471 1.539388 CACCGCCTCAAATTTACAGCA 59.461 47.619 0.00 0.00 0.00 4.41
471 472 2.164219 CACCGCCTCAAATTTACAGCAT 59.836 45.455 0.00 0.00 0.00 3.79
472 473 2.423538 ACCGCCTCAAATTTACAGCATC 59.576 45.455 0.00 0.00 0.00 3.91
473 474 2.223572 CCGCCTCAAATTTACAGCATCC 60.224 50.000 0.00 0.00 0.00 3.51
474 475 2.223572 CGCCTCAAATTTACAGCATCCC 60.224 50.000 0.00 0.00 0.00 3.85
475 476 2.223572 GCCTCAAATTTACAGCATCCCG 60.224 50.000 0.00 0.00 0.00 5.14
476 477 3.016736 CCTCAAATTTACAGCATCCCGT 58.983 45.455 0.00 0.00 0.00 5.28
477 478 4.196193 CCTCAAATTTACAGCATCCCGTA 58.804 43.478 0.00 0.00 0.00 4.02
478 479 4.273480 CCTCAAATTTACAGCATCCCGTAG 59.727 45.833 0.00 0.00 0.00 3.51
479 480 3.625764 TCAAATTTACAGCATCCCGTAGC 59.374 43.478 0.00 0.00 0.00 3.58
480 481 1.865865 ATTTACAGCATCCCGTAGCG 58.134 50.000 0.00 0.00 35.48 4.26
481 482 0.533491 TTTACAGCATCCCGTAGCGT 59.467 50.000 0.00 0.00 35.48 5.07
482 483 0.533491 TTACAGCATCCCGTAGCGTT 59.467 50.000 0.00 0.00 35.48 4.84
483 484 0.533491 TACAGCATCCCGTAGCGTTT 59.467 50.000 0.00 0.00 35.48 3.60
484 485 0.321298 ACAGCATCCCGTAGCGTTTT 60.321 50.000 0.00 0.00 35.48 2.43
485 486 0.802494 CAGCATCCCGTAGCGTTTTT 59.198 50.000 0.00 0.00 35.48 1.94
486 487 1.084289 AGCATCCCGTAGCGTTTTTC 58.916 50.000 0.00 0.00 35.48 2.29
487 488 0.800012 GCATCCCGTAGCGTTTTTCA 59.200 50.000 0.00 0.00 0.00 2.69
488 489 1.202031 GCATCCCGTAGCGTTTTTCAG 60.202 52.381 0.00 0.00 0.00 3.02
489 490 1.084289 ATCCCGTAGCGTTTTTCAGC 58.916 50.000 0.00 0.00 0.00 4.26
490 491 1.131826 CCCGTAGCGTTTTTCAGCG 59.868 57.895 0.00 0.00 38.61 5.18
495 496 2.351888 GCGTTTTTCAGCGCGTGT 60.352 55.556 8.43 0.00 44.13 4.49
496 497 2.347168 GCGTTTTTCAGCGCGTGTC 61.347 57.895 8.43 0.00 44.13 3.67
497 498 1.721133 CGTTTTTCAGCGCGTGTCC 60.721 57.895 8.43 0.00 0.00 4.02
498 499 1.353804 GTTTTTCAGCGCGTGTCCA 59.646 52.632 8.43 0.00 0.00 4.02
499 500 0.248296 GTTTTTCAGCGCGTGTCCAA 60.248 50.000 8.43 0.00 0.00 3.53
500 501 0.665835 TTTTTCAGCGCGTGTCCAAT 59.334 45.000 8.43 0.00 0.00 3.16
501 502 0.665835 TTTTCAGCGCGTGTCCAATT 59.334 45.000 8.43 0.00 0.00 2.32
502 503 0.665835 TTTCAGCGCGTGTCCAATTT 59.334 45.000 8.43 0.00 0.00 1.82
503 504 0.665835 TTCAGCGCGTGTCCAATTTT 59.334 45.000 8.43 0.00 0.00 1.82
504 505 0.665835 TCAGCGCGTGTCCAATTTTT 59.334 45.000 8.43 0.00 0.00 1.94
548 549 4.981389 CTTCTGTTGAAGCTGTACTGTC 57.019 45.455 1.46 0.00 42.50 3.51
549 550 3.386768 TCTGTTGAAGCTGTACTGTCC 57.613 47.619 1.46 0.00 0.00 4.02
550 551 2.061773 CTGTTGAAGCTGTACTGTCCG 58.938 52.381 1.46 0.00 0.00 4.79
551 552 1.270094 TGTTGAAGCTGTACTGTCCGG 60.270 52.381 0.00 0.00 0.00 5.14
552 553 0.320421 TTGAAGCTGTACTGTCCGGC 60.320 55.000 0.00 0.00 34.32 6.13
553 554 1.292223 GAAGCTGTACTGTCCGGCA 59.708 57.895 6.96 0.00 36.64 5.69
554 555 0.108138 GAAGCTGTACTGTCCGGCAT 60.108 55.000 6.96 0.00 36.64 4.40
555 556 0.108138 AAGCTGTACTGTCCGGCATC 60.108 55.000 6.96 0.00 36.64 3.91
556 557 1.218047 GCTGTACTGTCCGGCATCA 59.782 57.895 0.00 0.00 34.28 3.07
557 558 0.391130 GCTGTACTGTCCGGCATCAA 60.391 55.000 0.00 0.00 34.28 2.57
558 559 1.943968 GCTGTACTGTCCGGCATCAAA 60.944 52.381 0.00 0.00 34.28 2.69
559 560 2.422597 CTGTACTGTCCGGCATCAAAA 58.577 47.619 0.00 0.00 0.00 2.44
560 561 2.811431 CTGTACTGTCCGGCATCAAAAA 59.189 45.455 0.00 0.00 0.00 1.94
561 562 2.550606 TGTACTGTCCGGCATCAAAAAC 59.449 45.455 0.00 0.00 0.00 2.43
562 563 0.958822 ACTGTCCGGCATCAAAAACC 59.041 50.000 0.00 0.00 0.00 3.27
563 564 1.247567 CTGTCCGGCATCAAAAACCT 58.752 50.000 0.00 0.00 0.00 3.50
564 565 0.958091 TGTCCGGCATCAAAAACCTG 59.042 50.000 0.00 0.00 0.00 4.00
565 566 1.243902 GTCCGGCATCAAAAACCTGA 58.756 50.000 0.00 0.00 0.00 3.86
566 567 1.611491 GTCCGGCATCAAAAACCTGAA 59.389 47.619 0.00 0.00 0.00 3.02
567 568 2.231235 GTCCGGCATCAAAAACCTGAAT 59.769 45.455 0.00 0.00 0.00 2.57
568 569 2.896685 TCCGGCATCAAAAACCTGAATT 59.103 40.909 0.00 0.00 0.00 2.17
569 570 3.323403 TCCGGCATCAAAAACCTGAATTT 59.677 39.130 0.00 0.00 0.00 1.82
570 571 4.064388 CCGGCATCAAAAACCTGAATTTT 58.936 39.130 0.00 0.00 33.13 1.82
571 572 5.011125 TCCGGCATCAAAAACCTGAATTTTA 59.989 36.000 0.00 0.00 31.50 1.52
572 573 5.698545 CCGGCATCAAAAACCTGAATTTTAA 59.301 36.000 0.00 0.00 31.50 1.52
573 574 6.371271 CCGGCATCAAAAACCTGAATTTTAAT 59.629 34.615 0.00 0.00 31.50 1.40
574 575 7.235777 CGGCATCAAAAACCTGAATTTTAATG 58.764 34.615 0.00 0.00 32.86 1.90
575 576 7.022979 GGCATCAAAAACCTGAATTTTAATGC 58.977 34.615 10.09 10.09 42.73 3.56
576 577 6.737750 GCATCAAAAACCTGAATTTTAATGCG 59.262 34.615 4.61 0.00 39.03 4.73
577 578 6.221858 TCAAAAACCTGAATTTTAATGCGC 57.778 33.333 0.00 0.00 31.50 6.09
578 579 4.901866 AAAACCTGAATTTTAATGCGCG 57.098 36.364 0.00 0.00 29.93 6.86
579 580 2.559998 ACCTGAATTTTAATGCGCGG 57.440 45.000 8.83 0.00 0.00 6.46
580 581 2.088423 ACCTGAATTTTAATGCGCGGA 58.912 42.857 8.83 5.00 0.00 5.54
581 582 2.097466 ACCTGAATTTTAATGCGCGGAG 59.903 45.455 8.83 0.00 0.00 4.63
629 630 3.137533 GTCTAGAAGATGCAGCCAATCC 58.862 50.000 0.00 0.00 0.00 3.01
664 665 0.519519 CGCTAAACGCCCATCAAACA 59.480 50.000 0.00 0.00 34.21 2.83
665 666 1.465689 CGCTAAACGCCCATCAAACAG 60.466 52.381 0.00 0.00 34.21 3.16
666 667 1.539827 GCTAAACGCCCATCAAACAGT 59.460 47.619 0.00 0.00 0.00 3.55
667 668 2.745281 GCTAAACGCCCATCAAACAGTA 59.255 45.455 0.00 0.00 0.00 2.74
668 669 3.189702 GCTAAACGCCCATCAAACAGTAA 59.810 43.478 0.00 0.00 0.00 2.24
669 670 3.636282 AAACGCCCATCAAACAGTAAC 57.364 42.857 0.00 0.00 0.00 2.50
670 671 2.264005 ACGCCCATCAAACAGTAACA 57.736 45.000 0.00 0.00 0.00 2.41
671 672 2.577700 ACGCCCATCAAACAGTAACAA 58.422 42.857 0.00 0.00 0.00 2.83
672 673 3.153919 ACGCCCATCAAACAGTAACAAT 58.846 40.909 0.00 0.00 0.00 2.71
673 674 4.328536 ACGCCCATCAAACAGTAACAATA 58.671 39.130 0.00 0.00 0.00 1.90
674 675 4.762765 ACGCCCATCAAACAGTAACAATAA 59.237 37.500 0.00 0.00 0.00 1.40
707 719 4.363990 CGTCACACCCGCTGCTCT 62.364 66.667 0.00 0.00 0.00 4.09
908 928 2.482333 CCCGCGAAACAAACCACCA 61.482 57.895 8.23 0.00 0.00 4.17
909 929 1.008995 CCGCGAAACAAACCACCAG 60.009 57.895 8.23 0.00 0.00 4.00
910 930 1.657181 CGCGAAACAAACCACCAGC 60.657 57.895 0.00 0.00 0.00 4.85
911 931 1.299850 GCGAAACAAACCACCAGCC 60.300 57.895 0.00 0.00 0.00 4.85
912 932 2.010582 GCGAAACAAACCACCAGCCA 62.011 55.000 0.00 0.00 0.00 4.75
959 985 3.373830 CATTGTTCTCCTCTCCCTCTCT 58.626 50.000 0.00 0.00 0.00 3.10
967 993 1.522900 CTCTCCCTCTCTCTCTCCCT 58.477 60.000 0.00 0.00 0.00 4.20
969 995 1.010793 TCTCCCTCTCTCTCTCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
974 1000 1.212688 CTCTCTCTCTCCCTCTCAGCA 59.787 57.143 0.00 0.00 0.00 4.41
977 1003 1.133513 TCTCTCTCCCTCTCAGCATCC 60.134 57.143 0.00 0.00 0.00 3.51
979 1005 2.086251 CTCTCCCTCTCAGCATCCGC 62.086 65.000 0.00 0.00 38.99 5.54
1004 1030 4.147449 CAGCTCCGACGGCATGGA 62.147 66.667 9.66 0.00 0.00 3.41
1030 1056 1.376553 GCACCTGCCAAGAGGAGAC 60.377 63.158 0.00 0.00 36.51 3.36
1032 1058 1.228894 ACCTGCCAAGAGGAGACGA 60.229 57.895 0.00 0.00 36.51 4.20
1203 1253 7.113658 TCTCTAGAGTGGATTTATTGTGGTC 57.886 40.000 19.21 0.00 0.00 4.02
1273 1326 1.881973 CCGGTTGCCCAATCATGATAG 59.118 52.381 9.04 3.62 0.00 2.08
1301 1354 4.093998 CACCATGAAAGCAGATCACAGTAC 59.906 45.833 0.00 0.00 0.00 2.73
1419 1472 1.354337 CCGAATCGGTCACAGTGCTG 61.354 60.000 14.46 0.00 42.73 4.41
1437 1494 2.027625 GAGGTTCTCCGTGTTGCCG 61.028 63.158 0.00 0.00 39.05 5.69
1632 1702 0.395173 ACTTGGGTGAAACGGCTTGT 60.395 50.000 0.00 0.00 38.12 3.16
1710 1780 1.611261 CAACTCCGGGGACAGGGTA 60.611 63.158 9.33 0.00 0.00 3.69
1866 1936 0.243907 TCTACAAGGTGCGTCTCAGC 59.756 55.000 0.00 0.00 43.25 4.26
1899 1970 3.011032 ACAGGGAAATCTGCTCAAGGATT 59.989 43.478 0.00 0.00 38.26 3.01
1924 1999 8.006298 TGGTTTATGCATTAATTCTAACCTGG 57.994 34.615 3.54 0.00 35.85 4.45
1930 2005 7.566760 TGCATTAATTCTAACCTGGTATGTG 57.433 36.000 0.00 0.00 0.00 3.21
1931 2006 6.545666 TGCATTAATTCTAACCTGGTATGTGG 59.454 38.462 0.00 0.00 0.00 4.17
1940 2016 8.096621 TCTAACCTGGTATGTGGATTTTGATA 57.903 34.615 0.00 0.00 0.00 2.15
1960 2036 7.156876 TGATATTCAGAAATGCGGAAAAGTT 57.843 32.000 0.00 0.00 34.41 2.66
2044 2120 1.084370 GGAAGATCACCAAGACGGCG 61.084 60.000 4.80 4.80 39.03 6.46
2161 2237 5.130311 TGCTAATTAGGCATGTCTTGGTCTA 59.870 40.000 4.49 0.00 34.56 2.59
2173 2249 2.093816 TCTTGGTCTATCACTGCAGCAG 60.094 50.000 21.54 21.54 37.52 4.24
2180 2256 5.295950 GTCTATCACTGCAGCAGTATTCAT 58.704 41.667 27.80 17.93 43.43 2.57
2282 2364 1.130561 GAAGCCGCTGAATTGGTGTAC 59.869 52.381 0.00 0.00 0.00 2.90
2318 2400 1.262417 TCGTACCTGATGCCAACAGA 58.738 50.000 3.20 0.00 37.54 3.41
2378 2460 0.322277 ATGAGGAGGCAGTGCAAGTG 60.322 55.000 18.61 0.00 41.28 3.16
2420 2502 3.434739 GCAGAATCTCTGGGTTGGATGAT 60.435 47.826 5.84 0.00 44.43 2.45
2552 2634 6.610830 AGAGACTAGACCTTGTGATGAATGAT 59.389 38.462 0.00 0.00 0.00 2.45
2630 2712 3.244526 GGGACCAAATGGCTTGTTGATTT 60.245 43.478 0.00 0.00 39.32 2.17
2642 2724 4.607235 GCTTGTTGATTTGTTACTTCGTCG 59.393 41.667 0.00 0.00 0.00 5.12
2651 2734 8.180267 TGATTTGTTACTTCGTCGGTTTTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
2670 2753 7.290857 TTTAAACTTTTAACGTGCATTTGCA 57.709 28.000 0.05 0.05 39.29 4.08
2723 2818 6.134535 TGTAGGAGGTTTTGTGGATGTTAT 57.865 37.500 0.00 0.00 0.00 1.89
2799 2894 1.966451 AAAGCGTTCCCTTGCGGAG 60.966 57.895 0.00 0.00 43.39 4.63
2819 2914 5.528870 GGAGTAATGTGGTTTCAGTTTTGG 58.471 41.667 0.00 0.00 0.00 3.28
2830 2925 1.340889 TCAGTTTTGGATGCAGTTGGC 59.659 47.619 0.00 0.00 45.13 4.52
2890 2985 5.808540 GGATGTGAAATTGTCATGTGGATTG 59.191 40.000 0.00 0.00 38.90 2.67
2910 3005 3.904571 TGCTCACTTGCTTTAATTGCAG 58.095 40.909 4.30 2.89 41.71 4.41
2947 3044 4.065088 CCTTTTCCTTTTGCTAAAAGCCC 58.935 43.478 12.92 0.00 45.05 5.19
2959 3056 3.188667 GCTAAAAGCCCAACACTGAGTAC 59.811 47.826 0.00 0.00 34.48 2.73
3128 3229 4.101585 TGGTGCTGGATTACTGATAAGAGG 59.898 45.833 0.00 0.00 0.00 3.69
3145 3246 5.801531 AAGAGGTCAGTATACACACACAA 57.198 39.130 5.50 0.00 0.00 3.33
3169 3270 3.569250 AAGAACACACACACAAACACC 57.431 42.857 0.00 0.00 0.00 4.16
3196 3297 7.577426 GCAAGAAGACATCCCAATATTTGTTGA 60.577 37.037 0.00 0.00 0.00 3.18
3336 3437 8.328758 TCTTTGACCTACAGTATGGATTTCAAT 58.671 33.333 3.76 0.00 43.62 2.57
3339 3440 5.754782 ACCTACAGTATGGATTTCAATGCA 58.245 37.500 0.00 0.00 43.62 3.96
3341 3442 5.824624 CCTACAGTATGGATTTCAATGCAGT 59.175 40.000 0.00 0.00 43.62 4.40
3349 3450 3.367703 GGATTTCAATGCAGTGGACTTGG 60.368 47.826 15.06 0.00 0.00 3.61
3352 3453 0.675083 CAATGCAGTGGACTTGGCAA 59.325 50.000 6.18 0.00 40.02 4.52
3353 3454 0.675633 AATGCAGTGGACTTGGCAAC 59.324 50.000 0.00 0.00 40.02 4.17
3364 3465 2.744741 GACTTGGCAACCTAGCTCTTTC 59.255 50.000 0.00 0.00 29.74 2.62
3421 3522 0.106894 CCTATTCCCAGCCGACTTCC 59.893 60.000 0.00 0.00 0.00 3.46
3423 3524 1.682451 TATTCCCAGCCGACTTCCCG 61.682 60.000 0.00 0.00 0.00 5.14
3448 3566 8.443160 CGCGATCCTGAAATATATGTTACATTT 58.557 33.333 0.00 0.00 0.00 2.32
3477 3595 1.078214 TCATGGCTCGCCCTCTTTG 60.078 57.895 5.33 0.00 34.56 2.77
3481 3599 2.347490 GCTCGCCCTCTTTGTCCA 59.653 61.111 0.00 0.00 0.00 4.02
3496 3614 3.921119 TGTCCATCATTGTTCTTGTGC 57.079 42.857 0.00 0.00 0.00 4.57
3586 3705 4.335400 TTCTTCCCCATTTTTCTTGTGC 57.665 40.909 0.00 0.00 0.00 4.57
3589 3708 0.678950 CCCCATTTTTCTTGTGCGGT 59.321 50.000 0.00 0.00 0.00 5.68
3613 3732 1.110518 TGAGGTGTGGTAGTCGTGCA 61.111 55.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.842764 TGGGGAGTATCATATACTAGTGTATGA 58.157 37.037 32.03 32.03 44.10 2.15
10 11 8.904834 GTGGGGAGTATCATATACTAGTGTATG 58.095 40.741 25.74 25.74 37.07 2.39
11 12 8.847816 AGTGGGGAGTATCATATACTAGTGTAT 58.152 37.037 5.39 5.93 38.87 2.29
12 13 8.228353 AGTGGGGAGTATCATATACTAGTGTA 57.772 38.462 5.39 3.26 36.25 2.90
13 14 7.104974 AGTGGGGAGTATCATATACTAGTGT 57.895 40.000 5.39 0.39 36.25 3.55
14 15 9.126151 CATAGTGGGGAGTATCATATACTAGTG 57.874 40.741 5.39 0.00 36.25 2.74
15 16 8.282982 CCATAGTGGGGAGTATCATATACTAGT 58.717 40.741 0.00 0.00 36.25 2.57
16 17 8.698973 CCATAGTGGGGAGTATCATATACTAG 57.301 42.308 0.00 0.00 36.25 2.57
33 34 1.071385 CTCTAAGGCTGCCCATAGTGG 59.929 57.143 16.57 11.38 34.70 4.00
34 35 1.765314 ACTCTAAGGCTGCCCATAGTG 59.235 52.381 16.57 19.24 34.70 2.74
35 36 2.182516 ACTCTAAGGCTGCCCATAGT 57.817 50.000 16.57 11.15 34.70 2.12
36 37 3.388024 TGTTACTCTAAGGCTGCCCATAG 59.612 47.826 16.57 17.65 34.46 2.23
37 38 3.380393 TGTTACTCTAAGGCTGCCCATA 58.620 45.455 16.57 8.34 0.00 2.74
38 39 2.196595 TGTTACTCTAAGGCTGCCCAT 58.803 47.619 16.57 7.49 0.00 4.00
39 40 1.651737 TGTTACTCTAAGGCTGCCCA 58.348 50.000 16.57 2.31 0.00 5.36
40 41 3.641906 TCTATGTTACTCTAAGGCTGCCC 59.358 47.826 16.57 0.00 0.00 5.36
41 42 4.939052 TCTATGTTACTCTAAGGCTGCC 57.061 45.455 11.65 11.65 0.00 4.85
42 43 7.455641 TCTATCTATGTTACTCTAAGGCTGC 57.544 40.000 0.00 0.00 0.00 5.25
44 45 9.689501 GGTATCTATCTATGTTACTCTAAGGCT 57.310 37.037 0.00 0.00 0.00 4.58
45 46 9.463902 TGGTATCTATCTATGTTACTCTAAGGC 57.536 37.037 0.00 0.00 0.00 4.35
81 82 9.944376 ATGACACAAAGTAGTACTACATCATTT 57.056 29.630 29.87 19.73 38.48 2.32
82 83 9.371136 CATGACACAAAGTAGTACTACATCATT 57.629 33.333 29.87 17.71 38.48 2.57
83 84 7.492669 GCATGACACAAAGTAGTACTACATCAT 59.507 37.037 29.87 22.67 38.48 2.45
84 85 6.811665 GCATGACACAAAGTAGTACTACATCA 59.188 38.462 29.87 21.77 38.48 3.07
85 86 6.811665 TGCATGACACAAAGTAGTACTACATC 59.188 38.462 29.87 18.05 38.48 3.06
86 87 6.697395 TGCATGACACAAAGTAGTACTACAT 58.303 36.000 29.87 18.82 38.48 2.29
87 88 6.091718 TGCATGACACAAAGTAGTACTACA 57.908 37.500 29.87 11.13 38.48 2.74
88 89 6.036083 CCATGCATGACACAAAGTAGTACTAC 59.964 42.308 28.31 23.03 36.35 2.73
89 90 6.106003 CCATGCATGACACAAAGTAGTACTA 58.894 40.000 28.31 0.00 0.00 1.82
90 91 4.937620 CCATGCATGACACAAAGTAGTACT 59.062 41.667 28.31 0.00 0.00 2.73
91 92 4.695455 ACCATGCATGACACAAAGTAGTAC 59.305 41.667 28.31 0.00 0.00 2.73
92 93 4.905429 ACCATGCATGACACAAAGTAGTA 58.095 39.130 28.31 0.00 0.00 1.82
93 94 3.753272 GACCATGCATGACACAAAGTAGT 59.247 43.478 28.31 12.55 0.00 2.73
94 95 3.752747 TGACCATGCATGACACAAAGTAG 59.247 43.478 28.31 9.32 0.00 2.57
95 96 3.501828 GTGACCATGCATGACACAAAGTA 59.498 43.478 31.88 10.72 36.10 2.24
96 97 2.294233 GTGACCATGCATGACACAAAGT 59.706 45.455 31.88 20.70 36.10 2.66
97 98 2.293955 TGTGACCATGCATGACACAAAG 59.706 45.455 34.58 20.07 39.65 2.77
98 99 2.305009 TGTGACCATGCATGACACAAA 58.695 42.857 34.58 23.16 39.65 2.83
99 100 1.978454 TGTGACCATGCATGACACAA 58.022 45.000 34.58 25.17 39.65 3.33
100 101 1.978454 TTGTGACCATGCATGACACA 58.022 45.000 33.82 33.82 40.25 3.72
101 102 3.581024 ATTTGTGACCATGCATGACAC 57.419 42.857 31.04 31.04 36.36 3.67
102 103 5.918426 ATTATTTGTGACCATGCATGACA 57.082 34.783 28.31 20.40 0.00 3.58
103 104 8.190122 TCTTAATTATTTGTGACCATGCATGAC 58.810 33.333 28.31 18.02 0.00 3.06
104 105 8.291191 TCTTAATTATTTGTGACCATGCATGA 57.709 30.769 28.31 5.25 0.00 3.07
105 106 9.188588 GATCTTAATTATTTGTGACCATGCATG 57.811 33.333 20.19 20.19 0.00 4.06
106 107 8.916062 TGATCTTAATTATTTGTGACCATGCAT 58.084 29.630 0.00 0.00 0.00 3.96
107 108 8.291191 TGATCTTAATTATTTGTGACCATGCA 57.709 30.769 0.00 0.00 0.00 3.96
108 109 9.403110 GATGATCTTAATTATTTGTGACCATGC 57.597 33.333 0.00 0.00 0.00 4.06
150 151 9.528489 TGCATATGATACTACCTTCATAGTGTA 57.472 33.333 6.97 0.00 38.02 2.90
151 152 8.422577 TGCATATGATACTACCTTCATAGTGT 57.577 34.615 6.97 0.00 38.02 3.55
152 153 9.310716 CATGCATATGATACTACCTTCATAGTG 57.689 37.037 6.97 0.00 38.02 2.74
153 154 9.259832 TCATGCATATGATACTACCTTCATAGT 57.740 33.333 6.97 0.00 38.37 2.12
188 189 7.373617 ACATCCATTTAAGGGACAAGTTTTT 57.626 32.000 0.00 0.00 37.23 1.94
189 190 6.994421 ACATCCATTTAAGGGACAAGTTTT 57.006 33.333 0.00 0.00 37.23 2.43
190 191 6.436218 GGTACATCCATTTAAGGGACAAGTTT 59.564 38.462 0.00 0.00 37.23 2.66
191 192 5.949952 GGTACATCCATTTAAGGGACAAGTT 59.050 40.000 0.00 0.00 37.23 2.66
192 193 5.253096 AGGTACATCCATTTAAGGGACAAGT 59.747 40.000 0.00 3.19 37.23 3.16
193 194 5.755849 AGGTACATCCATTTAAGGGACAAG 58.244 41.667 0.00 0.00 37.23 3.16
194 195 5.789574 AGGTACATCCATTTAAGGGACAA 57.210 39.130 0.00 0.00 37.23 3.18
195 196 5.163237 GCTAGGTACATCCATTTAAGGGACA 60.163 44.000 0.00 0.00 37.23 4.02
196 197 5.163237 TGCTAGGTACATCCATTTAAGGGAC 60.163 44.000 0.00 0.00 37.23 4.46
197 198 4.972568 TGCTAGGTACATCCATTTAAGGGA 59.027 41.667 0.00 0.00 39.02 4.20
198 199 5.304686 TGCTAGGTACATCCATTTAAGGG 57.695 43.478 0.00 0.00 39.02 3.95
199 200 8.784043 GTTTATGCTAGGTACATCCATTTAAGG 58.216 37.037 0.00 0.00 39.02 2.69
200 201 9.561069 AGTTTATGCTAGGTACATCCATTTAAG 57.439 33.333 0.00 0.00 39.02 1.85
201 202 9.914834 AAGTTTATGCTAGGTACATCCATTTAA 57.085 29.630 0.00 0.00 39.02 1.52
202 203 9.337396 CAAGTTTATGCTAGGTACATCCATTTA 57.663 33.333 0.00 0.00 39.02 1.40
203 204 7.285401 CCAAGTTTATGCTAGGTACATCCATTT 59.715 37.037 0.00 0.00 39.02 2.32
204 205 6.772716 CCAAGTTTATGCTAGGTACATCCATT 59.227 38.462 0.00 0.00 39.02 3.16
205 206 6.126478 ACCAAGTTTATGCTAGGTACATCCAT 60.126 38.462 0.00 0.00 39.02 3.41
206 207 5.190925 ACCAAGTTTATGCTAGGTACATCCA 59.809 40.000 0.00 0.00 39.02 3.41
207 208 5.527582 CACCAAGTTTATGCTAGGTACATCC 59.472 44.000 0.00 0.00 0.00 3.51
208 209 5.007724 GCACCAAGTTTATGCTAGGTACATC 59.992 44.000 0.00 0.00 36.40 3.06
209 210 4.881850 GCACCAAGTTTATGCTAGGTACAT 59.118 41.667 0.00 0.00 36.40 2.29
210 211 4.258543 GCACCAAGTTTATGCTAGGTACA 58.741 43.478 0.00 0.00 36.40 2.90
211 212 4.877323 GCACCAAGTTTATGCTAGGTAC 57.123 45.455 0.00 0.00 36.40 3.34
218 219 9.219603 TGAATATATCTAGCACCAAGTTTATGC 57.780 33.333 0.58 0.58 39.74 3.14
223 224 9.851686 TCAAATGAATATATCTAGCACCAAGTT 57.148 29.630 0.00 0.00 0.00 2.66
224 225 9.499479 CTCAAATGAATATATCTAGCACCAAGT 57.501 33.333 0.00 0.00 0.00 3.16
225 226 8.944029 CCTCAAATGAATATATCTAGCACCAAG 58.056 37.037 0.00 0.00 0.00 3.61
226 227 7.884877 CCCTCAAATGAATATATCTAGCACCAA 59.115 37.037 0.00 0.00 0.00 3.67
227 228 7.237471 TCCCTCAAATGAATATATCTAGCACCA 59.763 37.037 0.00 0.00 0.00 4.17
228 229 7.550906 GTCCCTCAAATGAATATATCTAGCACC 59.449 40.741 0.00 0.00 0.00 5.01
229 230 8.097038 TGTCCCTCAAATGAATATATCTAGCAC 58.903 37.037 0.00 0.00 0.00 4.40
230 231 8.206126 TGTCCCTCAAATGAATATATCTAGCA 57.794 34.615 0.00 0.00 0.00 3.49
231 232 9.160496 CTTGTCCCTCAAATGAATATATCTAGC 57.840 37.037 0.00 0.00 35.48 3.42
234 235 9.927081 AAACTTGTCCCTCAAATGAATATATCT 57.073 29.630 0.00 0.00 35.48 1.98
259 260 5.424252 ACCATATACTCTCTCCGTCCAAAAA 59.576 40.000 0.00 0.00 0.00 1.94
260 261 4.960469 ACCATATACTCTCTCCGTCCAAAA 59.040 41.667 0.00 0.00 0.00 2.44
261 262 4.543689 ACCATATACTCTCTCCGTCCAAA 58.456 43.478 0.00 0.00 0.00 3.28
262 263 4.180377 ACCATATACTCTCTCCGTCCAA 57.820 45.455 0.00 0.00 0.00 3.53
263 264 3.878237 ACCATATACTCTCTCCGTCCA 57.122 47.619 0.00 0.00 0.00 4.02
264 265 4.909001 AGTACCATATACTCTCTCCGTCC 58.091 47.826 0.00 0.00 0.00 4.79
265 266 4.937015 GGAGTACCATATACTCTCTCCGTC 59.063 50.000 12.52 0.00 42.54 4.79
266 267 4.263418 GGGAGTACCATATACTCTCTCCGT 60.263 50.000 12.52 0.00 40.84 4.69
267 268 4.263435 GGGAGTACCATATACTCTCTCCG 58.737 52.174 12.52 0.00 40.84 4.63
268 269 4.044317 TGGGGAGTACCATATACTCTCTCC 59.956 50.000 12.49 11.77 42.96 3.71
269 270 5.011586 GTGGGGAGTACCATATACTCTCTC 58.988 50.000 12.49 5.18 42.96 3.20
270 271 4.670727 AGTGGGGAGTACCATATACTCTCT 59.329 45.833 12.49 5.40 42.96 3.10
271 272 5.000570 AGTGGGGAGTACCATATACTCTC 57.999 47.826 12.52 9.24 43.59 3.20
272 273 6.277283 TCATAGTGGGGAGTACCATATACTCT 59.723 42.308 12.52 0.00 43.59 3.24
273 274 6.491383 TCATAGTGGGGAGTACCATATACTC 58.509 44.000 5.67 5.67 43.59 2.59
274 275 6.046881 ACTCATAGTGGGGAGTACCATATACT 59.953 42.308 0.00 0.00 42.30 2.12
275 276 6.254522 ACTCATAGTGGGGAGTACCATATAC 58.745 44.000 0.00 0.00 42.30 1.47
276 277 6.479395 ACTCATAGTGGGGAGTACCATATA 57.521 41.667 0.00 0.00 42.30 0.86
277 278 5.355670 ACTCATAGTGGGGAGTACCATAT 57.644 43.478 0.00 0.00 42.30 1.78
278 279 4.827036 ACTCATAGTGGGGAGTACCATA 57.173 45.455 0.00 0.00 42.30 2.74
279 280 3.708236 ACTCATAGTGGGGAGTACCAT 57.292 47.619 0.00 0.00 42.30 3.55
280 281 3.690438 GCTACTCATAGTGGGGAGTACCA 60.690 52.174 0.00 0.00 42.30 3.25
281 282 2.892215 GCTACTCATAGTGGGGAGTACC 59.108 54.545 0.00 0.00 42.30 3.34
282 283 2.892215 GGCTACTCATAGTGGGGAGTAC 59.108 54.545 0.00 0.00 42.30 2.73
283 284 2.789992 AGGCTACTCATAGTGGGGAGTA 59.210 50.000 0.00 0.00 42.30 2.59
284 285 1.576272 AGGCTACTCATAGTGGGGAGT 59.424 52.381 0.00 0.00 45.72 3.85
285 286 2.390225 AGGCTACTCATAGTGGGGAG 57.610 55.000 0.00 0.00 37.18 4.30
286 287 3.465966 TCTTAGGCTACTCATAGTGGGGA 59.534 47.826 0.00 0.00 0.00 4.81
287 288 3.829601 CTCTTAGGCTACTCATAGTGGGG 59.170 52.174 0.00 0.00 0.00 4.96
288 289 3.257127 GCTCTTAGGCTACTCATAGTGGG 59.743 52.174 0.00 0.00 0.00 4.61
289 290 3.891977 TGCTCTTAGGCTACTCATAGTGG 59.108 47.826 0.00 0.00 0.00 4.00
290 291 5.010516 ACATGCTCTTAGGCTACTCATAGTG 59.989 44.000 0.00 0.00 0.00 2.74
291 292 5.144100 ACATGCTCTTAGGCTACTCATAGT 58.856 41.667 0.00 0.00 0.00 2.12
292 293 5.336372 GGACATGCTCTTAGGCTACTCATAG 60.336 48.000 0.00 0.00 0.00 2.23
293 294 4.524714 GGACATGCTCTTAGGCTACTCATA 59.475 45.833 0.00 0.00 0.00 2.15
294 295 3.323403 GGACATGCTCTTAGGCTACTCAT 59.677 47.826 0.00 0.00 0.00 2.90
295 296 2.695666 GGACATGCTCTTAGGCTACTCA 59.304 50.000 0.00 0.00 0.00 3.41
296 297 2.695666 TGGACATGCTCTTAGGCTACTC 59.304 50.000 0.00 0.00 0.00 2.59
297 298 2.752030 TGGACATGCTCTTAGGCTACT 58.248 47.619 0.00 0.00 0.00 2.57
298 299 3.198872 GTTGGACATGCTCTTAGGCTAC 58.801 50.000 0.00 0.00 0.00 3.58
299 300 2.837591 TGTTGGACATGCTCTTAGGCTA 59.162 45.455 0.00 0.00 0.00 3.93
300 301 1.630369 TGTTGGACATGCTCTTAGGCT 59.370 47.619 0.00 0.00 0.00 4.58
301 302 2.012673 CTGTTGGACATGCTCTTAGGC 58.987 52.381 0.00 0.00 0.00 3.93
302 303 2.636830 CCTGTTGGACATGCTCTTAGG 58.363 52.381 0.00 0.00 34.57 2.69
303 304 2.012673 GCCTGTTGGACATGCTCTTAG 58.987 52.381 0.00 0.00 36.90 2.18
304 305 1.675714 CGCCTGTTGGACATGCTCTTA 60.676 52.381 0.00 0.00 37.55 2.10
305 306 0.957395 CGCCTGTTGGACATGCTCTT 60.957 55.000 0.00 0.00 37.55 2.85
306 307 1.376424 CGCCTGTTGGACATGCTCT 60.376 57.895 0.00 0.00 37.55 4.09
307 308 3.044059 GCGCCTGTTGGACATGCTC 62.044 63.158 0.00 0.00 37.55 4.26
308 309 3.058160 GCGCCTGTTGGACATGCT 61.058 61.111 0.00 0.00 37.55 3.79
309 310 4.120331 GGCGCCTGTTGGACATGC 62.120 66.667 22.15 0.00 36.57 4.06
310 311 3.443045 GGGCGCCTGTTGGACATG 61.443 66.667 28.56 0.00 34.57 3.21
311 312 2.992817 TTTGGGCGCCTGTTGGACAT 62.993 55.000 28.56 0.00 34.57 3.06
312 313 3.723097 TTTGGGCGCCTGTTGGACA 62.723 57.895 28.56 11.19 34.57 4.02
313 314 1.815817 ATTTTGGGCGCCTGTTGGAC 61.816 55.000 28.56 8.18 34.57 4.02
314 315 1.118356 AATTTTGGGCGCCTGTTGGA 61.118 50.000 28.56 8.32 34.57 3.53
315 316 0.250252 AAATTTTGGGCGCCTGTTGG 60.250 50.000 28.56 0.00 0.00 3.77
316 317 1.530720 GAAAATTTTGGGCGCCTGTTG 59.469 47.619 28.56 0.00 0.00 3.33
317 318 1.139853 TGAAAATTTTGGGCGCCTGTT 59.860 42.857 28.56 7.15 0.00 3.16
318 319 0.755686 TGAAAATTTTGGGCGCCTGT 59.244 45.000 28.56 0.00 0.00 4.00
319 320 1.733360 CATGAAAATTTTGGGCGCCTG 59.267 47.619 28.56 8.06 0.00 4.85
320 321 1.945355 GCATGAAAATTTTGGGCGCCT 60.945 47.619 28.56 2.49 0.00 5.52
321 322 0.447406 GCATGAAAATTTTGGGCGCC 59.553 50.000 21.18 21.18 0.00 6.53
322 323 0.447406 GGCATGAAAATTTTGGGCGC 59.553 50.000 8.47 0.00 0.00 6.53
323 324 1.085893 GGGCATGAAAATTTTGGGCG 58.914 50.000 8.47 0.00 0.00 6.13
324 325 2.495155 AGGGCATGAAAATTTTGGGC 57.505 45.000 8.47 9.59 0.00 5.36
325 326 7.828717 ACTATTTTAGGGCATGAAAATTTTGGG 59.171 33.333 8.47 0.00 36.77 4.12
326 327 8.791327 ACTATTTTAGGGCATGAAAATTTTGG 57.209 30.769 8.47 0.00 36.77 3.28
332 333 9.413048 CGTTAAAACTATTTTAGGGCATGAAAA 57.587 29.630 0.00 0.00 36.56 2.29
333 334 7.542824 GCGTTAAAACTATTTTAGGGCATGAAA 59.457 33.333 0.00 0.00 36.56 2.69
334 335 7.030768 GCGTTAAAACTATTTTAGGGCATGAA 58.969 34.615 0.00 0.00 36.56 2.57
335 336 6.557110 GCGTTAAAACTATTTTAGGGCATGA 58.443 36.000 0.00 0.00 36.56 3.07
336 337 5.454232 CGCGTTAAAACTATTTTAGGGCATG 59.546 40.000 0.00 0.00 36.56 4.06
337 338 5.575019 CGCGTTAAAACTATTTTAGGGCAT 58.425 37.500 0.00 0.00 36.56 4.40
338 339 4.672283 GCGCGTTAAAACTATTTTAGGGCA 60.672 41.667 8.43 0.00 38.23 5.36
339 340 3.787634 GCGCGTTAAAACTATTTTAGGGC 59.212 43.478 8.43 6.60 36.56 5.19
340 341 4.972201 TGCGCGTTAAAACTATTTTAGGG 58.028 39.130 8.43 0.00 36.56 3.53
341 342 6.032042 CAGTTGCGCGTTAAAACTATTTTAGG 59.968 38.462 8.43 0.00 36.56 2.69
342 343 6.575942 ACAGTTGCGCGTTAAAACTATTTTAG 59.424 34.615 8.43 3.25 36.56 1.85
343 344 6.428799 ACAGTTGCGCGTTAAAACTATTTTA 58.571 32.000 8.43 0.00 32.96 1.52
344 345 5.275494 ACAGTTGCGCGTTAAAACTATTTT 58.725 33.333 8.43 0.00 32.96 1.82
345 346 4.851010 ACAGTTGCGCGTTAAAACTATTT 58.149 34.783 8.43 0.00 32.96 1.40
346 347 4.477302 ACAGTTGCGCGTTAAAACTATT 57.523 36.364 8.43 1.48 32.96 1.73
347 348 4.435121 GCTACAGTTGCGCGTTAAAACTAT 60.435 41.667 8.43 5.12 32.96 2.12
348 349 3.120923 GCTACAGTTGCGCGTTAAAACTA 60.121 43.478 8.43 0.00 32.96 2.24
349 350 2.349155 GCTACAGTTGCGCGTTAAAACT 60.349 45.455 8.43 10.19 34.52 2.66
350 351 1.967235 GCTACAGTTGCGCGTTAAAAC 59.033 47.619 8.43 7.94 0.00 2.43
351 352 1.598132 TGCTACAGTTGCGCGTTAAAA 59.402 42.857 8.43 0.00 0.00 1.52
352 353 1.193650 CTGCTACAGTTGCGCGTTAAA 59.806 47.619 8.43 0.00 0.00 1.52
353 354 0.787787 CTGCTACAGTTGCGCGTTAA 59.212 50.000 8.43 0.02 0.00 2.01
354 355 0.319211 ACTGCTACAGTTGCGCGTTA 60.319 50.000 8.43 0.00 42.59 3.18
355 356 1.594293 ACTGCTACAGTTGCGCGTT 60.594 52.632 8.43 0.00 42.59 4.84
356 357 2.029073 ACTGCTACAGTTGCGCGT 59.971 55.556 8.43 0.00 42.59 6.01
364 365 0.247301 GCGCGCTTAAACTGCTACAG 60.247 55.000 26.67 0.00 37.52 2.74
365 366 1.632046 GGCGCGCTTAAACTGCTACA 61.632 55.000 32.29 0.00 0.00 2.74
366 367 1.060465 GGCGCGCTTAAACTGCTAC 59.940 57.895 32.29 5.31 0.00 3.58
367 368 2.449525 CGGCGCGCTTAAACTGCTA 61.450 57.895 32.29 0.00 0.00 3.49
368 369 3.788766 CGGCGCGCTTAAACTGCT 61.789 61.111 32.29 0.00 0.00 4.24
369 370 4.811761 CCGGCGCGCTTAAACTGC 62.812 66.667 32.29 10.55 0.00 4.40
370 371 3.115892 TCCGGCGCGCTTAAACTG 61.116 61.111 32.29 10.27 0.00 3.16
371 372 3.116531 GTCCGGCGCGCTTAAACT 61.117 61.111 32.29 0.00 0.00 2.66
372 373 4.156622 GGTCCGGCGCGCTTAAAC 62.157 66.667 32.29 21.95 0.00 2.01
380 381 4.114997 CAATGTTGGGTCCGGCGC 62.115 66.667 0.00 0.00 0.00 6.53
381 382 1.801309 AAACAATGTTGGGTCCGGCG 61.801 55.000 0.00 0.00 0.00 6.46
382 383 0.391228 AAAACAATGTTGGGTCCGGC 59.609 50.000 0.00 0.00 0.00 6.13
383 384 3.508012 TGATAAAACAATGTTGGGTCCGG 59.492 43.478 0.00 0.00 0.00 5.14
384 385 4.775058 TGATAAAACAATGTTGGGTCCG 57.225 40.909 0.00 0.00 0.00 4.79
385 386 6.701400 GCATATGATAAAACAATGTTGGGTCC 59.299 38.462 6.97 0.00 0.00 4.46
386 387 6.701400 GGCATATGATAAAACAATGTTGGGTC 59.299 38.462 6.97 0.00 0.00 4.46
387 388 6.407979 GGGCATATGATAAAACAATGTTGGGT 60.408 38.462 6.97 0.00 0.00 4.51
388 389 5.990996 GGGCATATGATAAAACAATGTTGGG 59.009 40.000 6.97 0.00 0.00 4.12
389 390 6.580788 TGGGCATATGATAAAACAATGTTGG 58.419 36.000 6.97 0.00 0.00 3.77
390 391 8.489990 TTTGGGCATATGATAAAACAATGTTG 57.510 30.769 6.97 0.00 0.00 3.33
391 392 9.512588 TTTTTGGGCATATGATAAAACAATGTT 57.487 25.926 6.97 0.00 0.00 2.71
392 393 8.945057 GTTTTTGGGCATATGATAAAACAATGT 58.055 29.630 6.97 0.00 36.20 2.71
393 394 8.944029 TGTTTTTGGGCATATGATAAAACAATG 58.056 29.630 21.88 0.00 40.45 2.82
394 395 8.945057 GTGTTTTTGGGCATATGATAAAACAAT 58.055 29.630 23.77 0.00 43.10 2.71
395 396 7.933577 TGTGTTTTTGGGCATATGATAAAACAA 59.066 29.630 23.77 16.91 43.10 2.83
396 397 7.386299 GTGTGTTTTTGGGCATATGATAAAACA 59.614 33.333 21.08 21.08 40.85 2.83
397 398 7.386299 TGTGTGTTTTTGGGCATATGATAAAAC 59.614 33.333 6.97 14.86 36.52 2.43
398 399 7.445121 TGTGTGTTTTTGGGCATATGATAAAA 58.555 30.769 6.97 7.39 0.00 1.52
399 400 6.997655 TGTGTGTTTTTGGGCATATGATAAA 58.002 32.000 6.97 1.34 0.00 1.40
400 401 6.210385 ACTGTGTGTTTTTGGGCATATGATAA 59.790 34.615 6.97 0.00 0.00 1.75
401 402 5.714333 ACTGTGTGTTTTTGGGCATATGATA 59.286 36.000 6.97 0.00 0.00 2.15
402 403 4.527816 ACTGTGTGTTTTTGGGCATATGAT 59.472 37.500 6.97 0.00 0.00 2.45
403 404 3.894427 ACTGTGTGTTTTTGGGCATATGA 59.106 39.130 6.97 0.00 0.00 2.15
404 405 3.989167 CACTGTGTGTTTTTGGGCATATG 59.011 43.478 0.00 0.00 0.00 1.78
405 406 3.640967 ACACTGTGTGTTTTTGGGCATAT 59.359 39.130 13.50 0.00 45.08 1.78
406 407 3.027412 ACACTGTGTGTTTTTGGGCATA 58.973 40.909 13.50 0.00 45.08 3.14
407 408 1.830477 ACACTGTGTGTTTTTGGGCAT 59.170 42.857 13.50 0.00 45.08 4.40
408 409 1.261480 ACACTGTGTGTTTTTGGGCA 58.739 45.000 13.50 0.00 45.08 5.36
409 410 3.512033 TTACACTGTGTGTTTTTGGGC 57.488 42.857 22.97 0.00 45.08 5.36
410 411 5.872070 ACAATTTACACTGTGTGTTTTTGGG 59.128 36.000 22.97 7.66 45.08 4.12
411 412 6.587990 TCACAATTTACACTGTGTGTTTTTGG 59.412 34.615 22.97 13.39 45.08 3.28
412 413 7.573916 TCACAATTTACACTGTGTGTTTTTG 57.426 32.000 22.97 19.85 45.08 2.44
413 414 8.491950 GTTTCACAATTTACACTGTGTGTTTTT 58.508 29.630 22.97 8.68 45.08 1.94
414 415 7.148885 CGTTTCACAATTTACACTGTGTGTTTT 60.149 33.333 22.97 10.32 45.08 2.43
415 416 6.306837 CGTTTCACAATTTACACTGTGTGTTT 59.693 34.615 22.97 10.65 45.08 2.83
416 417 5.797934 CGTTTCACAATTTACACTGTGTGTT 59.202 36.000 22.97 11.96 45.08 3.32
418 419 5.226978 CACGTTTCACAATTTACACTGTGTG 59.773 40.000 22.97 8.62 42.86 3.82
419 420 5.106475 ACACGTTTCACAATTTACACTGTGT 60.106 36.000 18.51 18.51 42.86 3.72
420 421 5.226978 CACACGTTTCACAATTTACACTGTG 59.773 40.000 6.19 6.19 43.53 3.66
421 422 5.328691 CACACGTTTCACAATTTACACTGT 58.671 37.500 0.00 0.00 0.00 3.55
422 423 4.204168 GCACACGTTTCACAATTTACACTG 59.796 41.667 0.00 0.00 0.00 3.66
423 424 4.142578 TGCACACGTTTCACAATTTACACT 60.143 37.500 0.00 0.00 0.00 3.55
424 425 4.099120 TGCACACGTTTCACAATTTACAC 58.901 39.130 0.00 0.00 0.00 2.90
425 426 4.357018 TGCACACGTTTCACAATTTACA 57.643 36.364 0.00 0.00 0.00 2.41
426 427 5.108027 GGATTGCACACGTTTCACAATTTAC 60.108 40.000 0.00 0.00 31.40 2.01
427 428 4.979197 GGATTGCACACGTTTCACAATTTA 59.021 37.500 0.00 0.00 31.40 1.40
428 429 3.801594 GGATTGCACACGTTTCACAATTT 59.198 39.130 0.00 0.00 31.40 1.82
429 430 3.181482 TGGATTGCACACGTTTCACAATT 60.181 39.130 0.00 0.00 31.40 2.32
430 431 2.360483 TGGATTGCACACGTTTCACAAT 59.640 40.909 0.00 3.30 33.82 2.71
431 432 1.745653 TGGATTGCACACGTTTCACAA 59.254 42.857 0.00 0.00 0.00 3.33
432 433 1.064803 GTGGATTGCACACGTTTCACA 59.935 47.619 3.13 0.00 0.00 3.58
433 434 1.599419 GGTGGATTGCACACGTTTCAC 60.599 52.381 10.61 0.00 39.69 3.18
434 435 0.665835 GGTGGATTGCACACGTTTCA 59.334 50.000 10.61 0.00 39.69 2.69
435 436 0.385473 CGGTGGATTGCACACGTTTC 60.385 55.000 10.61 0.00 39.69 2.78
436 437 1.652012 CGGTGGATTGCACACGTTT 59.348 52.632 10.61 0.00 39.69 3.60
437 438 2.903547 GCGGTGGATTGCACACGTT 61.904 57.895 10.61 0.00 39.69 3.99
438 439 3.353836 GCGGTGGATTGCACACGT 61.354 61.111 10.61 0.00 39.69 4.49
439 440 4.101790 GGCGGTGGATTGCACACG 62.102 66.667 10.61 11.67 39.69 4.49
440 441 2.672996 AGGCGGTGGATTGCACAC 60.673 61.111 10.61 1.62 38.10 3.82
441 442 2.359850 GAGGCGGTGGATTGCACA 60.360 61.111 10.61 0.00 0.00 4.57
442 443 1.523154 TTTGAGGCGGTGGATTGCAC 61.523 55.000 0.00 0.00 0.00 4.57
443 444 0.611618 ATTTGAGGCGGTGGATTGCA 60.612 50.000 0.00 0.00 0.00 4.08
444 445 0.532115 AATTTGAGGCGGTGGATTGC 59.468 50.000 0.00 0.00 0.00 3.56
445 446 3.192422 TGTAAATTTGAGGCGGTGGATTG 59.808 43.478 0.00 0.00 0.00 2.67
446 447 3.426615 TGTAAATTTGAGGCGGTGGATT 58.573 40.909 0.00 0.00 0.00 3.01
447 448 3.016736 CTGTAAATTTGAGGCGGTGGAT 58.983 45.455 0.00 0.00 0.00 3.41
448 449 2.432444 CTGTAAATTTGAGGCGGTGGA 58.568 47.619 0.00 0.00 0.00 4.02
449 450 1.135402 GCTGTAAATTTGAGGCGGTGG 60.135 52.381 0.00 0.00 0.00 4.61
450 451 1.539388 TGCTGTAAATTTGAGGCGGTG 59.461 47.619 0.00 0.00 0.00 4.94
451 452 1.904287 TGCTGTAAATTTGAGGCGGT 58.096 45.000 0.00 0.00 0.00 5.68
452 453 2.223572 GGATGCTGTAAATTTGAGGCGG 60.224 50.000 0.00 0.00 0.00 6.13
453 454 2.223572 GGGATGCTGTAAATTTGAGGCG 60.224 50.000 0.00 0.00 0.00 5.52
454 455 2.223572 CGGGATGCTGTAAATTTGAGGC 60.224 50.000 0.00 2.83 0.00 4.70
455 456 3.016736 ACGGGATGCTGTAAATTTGAGG 58.983 45.455 0.00 0.00 0.00 3.86
456 457 4.260784 GCTACGGGATGCTGTAAATTTGAG 60.261 45.833 7.37 0.00 0.00 3.02
457 458 3.625764 GCTACGGGATGCTGTAAATTTGA 59.374 43.478 7.37 0.00 0.00 2.69
458 459 3.546020 CGCTACGGGATGCTGTAAATTTG 60.546 47.826 7.37 0.00 0.00 2.32
459 460 2.612212 CGCTACGGGATGCTGTAAATTT 59.388 45.455 7.37 0.00 0.00 1.82
460 461 2.210116 CGCTACGGGATGCTGTAAATT 58.790 47.619 7.37 0.00 0.00 1.82
461 462 1.138266 ACGCTACGGGATGCTGTAAAT 59.862 47.619 7.37 0.00 0.00 1.40
462 463 0.533491 ACGCTACGGGATGCTGTAAA 59.467 50.000 7.37 0.00 0.00 2.01
463 464 0.533491 AACGCTACGGGATGCTGTAA 59.467 50.000 7.37 0.00 0.00 2.41
464 465 0.533491 AAACGCTACGGGATGCTGTA 59.467 50.000 5.72 5.72 0.00 2.74
465 466 0.321298 AAAACGCTACGGGATGCTGT 60.321 50.000 3.47 3.47 0.00 4.40
466 467 0.802494 AAAAACGCTACGGGATGCTG 59.198 50.000 0.00 0.00 0.00 4.41
467 468 1.084289 GAAAAACGCTACGGGATGCT 58.916 50.000 0.00 0.00 0.00 3.79
468 469 0.800012 TGAAAAACGCTACGGGATGC 59.200 50.000 0.00 0.00 0.00 3.91
469 470 1.202031 GCTGAAAAACGCTACGGGATG 60.202 52.381 0.00 0.00 0.00 3.51
470 471 1.084289 GCTGAAAAACGCTACGGGAT 58.916 50.000 0.00 0.00 0.00 3.85
471 472 1.286354 CGCTGAAAAACGCTACGGGA 61.286 55.000 0.00 0.00 0.00 5.14
472 473 1.131826 CGCTGAAAAACGCTACGGG 59.868 57.895 0.00 0.00 0.00 5.28
473 474 4.717917 CGCTGAAAAACGCTACGG 57.282 55.556 0.00 0.00 0.00 4.02
479 480 1.721133 GGACACGCGCTGAAAAACG 60.721 57.895 5.73 0.00 0.00 3.60
480 481 0.248296 TTGGACACGCGCTGAAAAAC 60.248 50.000 5.73 0.00 0.00 2.43
481 482 0.665835 ATTGGACACGCGCTGAAAAA 59.334 45.000 5.73 0.00 0.00 1.94
482 483 0.665835 AATTGGACACGCGCTGAAAA 59.334 45.000 5.73 0.00 0.00 2.29
483 484 0.665835 AAATTGGACACGCGCTGAAA 59.334 45.000 5.73 0.00 0.00 2.69
484 485 0.665835 AAAATTGGACACGCGCTGAA 59.334 45.000 5.73 0.00 0.00 3.02
485 486 0.665835 AAAAATTGGACACGCGCTGA 59.334 45.000 5.73 0.00 0.00 4.26
486 487 3.177883 AAAAATTGGACACGCGCTG 57.822 47.368 5.73 6.58 0.00 5.18
527 528 3.743396 GGACAGTACAGCTTCAACAGAAG 59.257 47.826 0.00 1.01 41.32 2.85
528 529 3.728845 GGACAGTACAGCTTCAACAGAA 58.271 45.455 0.00 0.00 0.00 3.02
529 530 2.288213 CGGACAGTACAGCTTCAACAGA 60.288 50.000 0.00 0.00 0.00 3.41
530 531 2.061773 CGGACAGTACAGCTTCAACAG 58.938 52.381 0.00 0.00 0.00 3.16
531 532 1.270094 CCGGACAGTACAGCTTCAACA 60.270 52.381 0.00 0.00 0.00 3.33
532 533 1.429463 CCGGACAGTACAGCTTCAAC 58.571 55.000 0.00 0.00 0.00 3.18
533 534 0.320421 GCCGGACAGTACAGCTTCAA 60.320 55.000 5.05 0.00 0.00 2.69
534 535 1.292223 GCCGGACAGTACAGCTTCA 59.708 57.895 5.05 0.00 0.00 3.02
535 536 0.108138 ATGCCGGACAGTACAGCTTC 60.108 55.000 5.05 0.00 0.00 3.86
536 537 0.108138 GATGCCGGACAGTACAGCTT 60.108 55.000 5.05 0.00 0.00 3.74
537 538 1.257750 TGATGCCGGACAGTACAGCT 61.258 55.000 5.05 0.00 0.00 4.24
538 539 0.391130 TTGATGCCGGACAGTACAGC 60.391 55.000 5.05 0.00 0.00 4.40
539 540 2.093306 TTTGATGCCGGACAGTACAG 57.907 50.000 5.05 0.00 0.00 2.74
540 541 2.550606 GTTTTTGATGCCGGACAGTACA 59.449 45.455 5.05 2.59 0.00 2.90
541 542 2.095415 GGTTTTTGATGCCGGACAGTAC 60.095 50.000 5.05 0.00 0.00 2.73
542 543 2.156098 GGTTTTTGATGCCGGACAGTA 58.844 47.619 5.05 0.00 0.00 2.74
543 544 0.958822 GGTTTTTGATGCCGGACAGT 59.041 50.000 5.05 0.00 0.00 3.55
544 545 1.068333 CAGGTTTTTGATGCCGGACAG 60.068 52.381 5.05 0.00 0.00 3.51
545 546 0.958091 CAGGTTTTTGATGCCGGACA 59.042 50.000 5.05 2.56 0.00 4.02
546 547 1.243902 TCAGGTTTTTGATGCCGGAC 58.756 50.000 5.05 0.00 0.00 4.79
547 548 1.988293 TTCAGGTTTTTGATGCCGGA 58.012 45.000 5.05 0.00 0.00 5.14
548 549 3.317603 AATTCAGGTTTTTGATGCCGG 57.682 42.857 0.00 0.00 0.00 6.13
549 550 6.777526 TTAAAATTCAGGTTTTTGATGCCG 57.222 33.333 0.00 0.00 33.62 5.69
552 553 6.737750 GCGCATTAAAATTCAGGTTTTTGATG 59.262 34.615 0.30 8.45 40.35 3.07
553 554 6.400940 CGCGCATTAAAATTCAGGTTTTTGAT 60.401 34.615 8.75 0.00 33.62 2.57
554 555 5.107683 CGCGCATTAAAATTCAGGTTTTTGA 60.108 36.000 8.75 0.00 33.62 2.69
555 556 5.072169 CGCGCATTAAAATTCAGGTTTTTG 58.928 37.500 8.75 0.00 33.62 2.44
556 557 4.151512 CCGCGCATTAAAATTCAGGTTTTT 59.848 37.500 8.75 0.00 33.62 1.94
557 558 3.677596 CCGCGCATTAAAATTCAGGTTTT 59.322 39.130 8.75 0.00 35.60 2.43
558 559 3.057174 TCCGCGCATTAAAATTCAGGTTT 60.057 39.130 8.75 0.00 0.00 3.27
559 560 2.490115 TCCGCGCATTAAAATTCAGGTT 59.510 40.909 8.75 0.00 0.00 3.50
560 561 2.088423 TCCGCGCATTAAAATTCAGGT 58.912 42.857 8.75 0.00 0.00 4.00
561 562 2.719798 CTCCGCGCATTAAAATTCAGG 58.280 47.619 8.75 0.00 0.00 3.86
562 563 2.111756 GCTCCGCGCATTAAAATTCAG 58.888 47.619 8.75 0.00 38.92 3.02
563 564 1.470494 TGCTCCGCGCATTAAAATTCA 59.530 42.857 8.75 0.00 45.47 2.57
564 565 2.187351 TGCTCCGCGCATTAAAATTC 57.813 45.000 8.75 0.00 45.47 2.17
574 575 0.736325 TTTAGAGAACTGCTCCGCGC 60.736 55.000 0.00 0.00 45.10 6.86
575 576 0.992802 GTTTAGAGAACTGCTCCGCG 59.007 55.000 0.00 0.00 45.10 6.46
576 577 1.727335 GTGTTTAGAGAACTGCTCCGC 59.273 52.381 0.00 0.00 45.10 5.54
577 578 3.026630 TGTGTTTAGAGAACTGCTCCG 57.973 47.619 0.00 0.00 45.10 4.63
578 579 3.614616 CGATGTGTTTAGAGAACTGCTCC 59.385 47.826 0.00 0.00 45.10 4.70
579 580 3.061429 GCGATGTGTTTAGAGAACTGCTC 59.939 47.826 0.00 0.00 44.29 4.26
580 581 2.996621 GCGATGTGTTTAGAGAACTGCT 59.003 45.455 0.00 0.00 0.00 4.24
581 582 2.736721 TGCGATGTGTTTAGAGAACTGC 59.263 45.455 0.00 0.00 0.00 4.40
582 583 3.740832 TGTGCGATGTGTTTAGAGAACTG 59.259 43.478 0.00 0.00 0.00 3.16
583 584 3.990092 TGTGCGATGTGTTTAGAGAACT 58.010 40.909 0.00 0.00 0.00 3.01
584 585 4.641954 CATGTGCGATGTGTTTAGAGAAC 58.358 43.478 0.00 0.00 0.00 3.01
585 586 3.125146 GCATGTGCGATGTGTTTAGAGAA 59.875 43.478 0.00 0.00 0.00 2.87
586 587 2.672874 GCATGTGCGATGTGTTTAGAGA 59.327 45.455 0.00 0.00 0.00 3.10
587 588 3.043635 GCATGTGCGATGTGTTTAGAG 57.956 47.619 0.00 0.00 0.00 2.43
629 630 3.175240 CGAGCTCAACTGCGTCCG 61.175 66.667 15.40 0.00 38.13 4.79
647 648 4.214545 TGTTACTGTTTGATGGGCGTTTAG 59.785 41.667 0.00 0.00 0.00 1.85
910 930 2.182537 GATTGCTTGCCGGCTTGG 59.817 61.111 29.70 17.89 42.50 3.61
911 931 2.182537 GGATTGCTTGCCGGCTTG 59.817 61.111 29.70 20.62 0.00 4.01
912 932 3.443045 CGGATTGCTTGCCGGCTT 61.443 61.111 29.70 5.09 43.67 4.35
935 960 0.548510 GGGAGAGGAGAACAATGGGG 59.451 60.000 0.00 0.00 0.00 4.96
959 985 0.467106 CGGATGCTGAGAGGGAGAGA 60.467 60.000 0.00 0.00 0.00 3.10
974 1000 1.365633 GAGCTGATTCGGAGCGGAT 59.634 57.895 0.00 0.00 41.61 4.18
977 1003 2.656651 CGGAGCTGATTCGGAGCG 60.657 66.667 0.00 0.00 41.61 5.03
979 1005 1.298713 CGTCGGAGCTGATTCGGAG 60.299 63.158 0.00 0.00 0.00 4.63
984 1010 1.522355 CATGCCGTCGGAGCTGATT 60.522 57.895 17.49 0.00 0.00 2.57
1017 1043 2.650116 GCCTCGTCTCCTCTTGGCA 61.650 63.158 0.00 0.00 40.04 4.92
1184 1227 6.293955 CGTTTTGACCACAATAAATCCACTCT 60.294 38.462 0.00 0.00 35.85 3.24
1203 1253 8.889717 ACAGTATATATTCCAGTTTCCGTTTTG 58.110 33.333 0.00 0.00 0.00 2.44
1241 1294 3.955291 CAACCGGTGCACAATCAAA 57.045 47.368 20.43 0.00 0.00 2.69
1273 1326 3.346631 CTGCTTTCATGGTGGCCGC 62.347 63.158 8.12 8.12 0.00 6.53
1301 1354 3.714391 CCGACGGAAAAGTAGGGAATAG 58.286 50.000 8.64 0.00 33.95 1.73
1413 1466 1.115930 ACACGGAGAACCTCAGCACT 61.116 55.000 0.00 0.00 31.08 4.40
1419 1472 2.027625 CGGCAACACGGAGAACCTC 61.028 63.158 0.00 0.00 0.00 3.85
1437 1494 1.259840 ATGGACCACTGCCCATTTGC 61.260 55.000 0.00 0.00 40.03 3.68
1525 1591 9.307121 CTCTCGTTCAACTACTAATCATGAATT 57.693 33.333 0.00 0.00 33.12 2.17
1579 1649 3.004734 CGTTTGCAGGGAAAACAGATTCT 59.995 43.478 1.16 0.00 37.37 2.40
1582 1652 2.306847 ACGTTTGCAGGGAAAACAGAT 58.693 42.857 1.16 0.00 37.37 2.90
1584 1654 2.577449 AACGTTTGCAGGGAAAACAG 57.423 45.000 0.00 0.00 37.37 3.16
1586 1656 4.036567 ACTTAACGTTTGCAGGGAAAAC 57.963 40.909 5.91 0.00 34.79 2.43
1632 1702 3.068732 CCTTCTCCACGAGCTGATCAATA 59.931 47.826 0.00 0.00 0.00 1.90
1710 1780 3.684990 TCCTTGAGCGCGCTGTCT 61.685 61.111 41.82 16.10 0.00 3.41
1866 1936 2.189594 TTTCCCTGTGAGATGTGCAG 57.810 50.000 0.00 0.00 0.00 4.41
1899 1970 7.617723 ACCAGGTTAGAATTAATGCATAAACCA 59.382 33.333 19.68 0.00 0.00 3.67
1904 1975 9.283768 CACATACCAGGTTAGAATTAATGCATA 57.716 33.333 0.00 0.00 0.00 3.14
1905 1976 7.231317 CCACATACCAGGTTAGAATTAATGCAT 59.769 37.037 0.00 0.00 0.00 3.96
1911 1986 9.184523 CAAAATCCACATACCAGGTTAGAATTA 57.815 33.333 0.00 0.00 0.00 1.40
1930 2005 6.738114 TCCGCATTTCTGAATATCAAAATCC 58.262 36.000 0.00 0.00 0.00 3.01
1931 2006 8.633075 TTTCCGCATTTCTGAATATCAAAATC 57.367 30.769 0.00 0.00 0.00 2.17
1940 2016 5.222631 GTCAACTTTTCCGCATTTCTGAAT 58.777 37.500 0.00 0.00 0.00 2.57
2044 2120 0.749454 ACTTCTTGCCATGGGATCGC 60.749 55.000 15.13 2.14 0.00 4.58
2161 2237 7.935755 AGTATAAATGAATACTGCTGCAGTGAT 59.064 33.333 37.89 27.76 45.01 3.06
2282 2364 1.749033 GATAGTCTGGGCCTTCCGG 59.251 63.158 4.53 0.00 43.43 5.14
2378 2460 0.389757 GAAGTAGGACATCCCCGAGC 59.610 60.000 0.00 0.00 36.42 5.03
2383 2465 1.112113 TCTGCGAAGTAGGACATCCC 58.888 55.000 0.00 0.00 41.75 3.85
2450 2532 2.041115 CGGACCGAGCTCACTGAGA 61.041 63.158 15.40 0.00 0.00 3.27
2630 2712 6.660887 AGTTTAAAAACCGACGAAGTAACA 57.339 33.333 0.00 0.00 39.75 2.41
2642 2724 8.990788 CAAATGCACGTTAAAAGTTTAAAAACC 58.009 29.630 0.00 0.00 39.71 3.27
2670 2753 6.658816 TGCACATCAACTTCTATTTACCACAT 59.341 34.615 0.00 0.00 0.00 3.21
2723 2818 8.539117 TCTATCAAATCTCTCATTCACACCTA 57.461 34.615 0.00 0.00 0.00 3.08
2799 2894 5.405269 GCATCCAAAACTGAAACCACATTAC 59.595 40.000 0.00 0.00 0.00 1.89
2819 2914 4.584688 GCAAAGGCCAACTGCATC 57.415 55.556 16.36 0.00 43.89 3.91
2830 2925 2.653234 AGCATATCTCTGGGCAAAGG 57.347 50.000 0.00 0.00 0.00 3.11
2890 2985 4.164822 TCTGCAATTAAAGCAAGTGAGC 57.835 40.909 7.28 0.00 42.17 4.26
2910 3005 8.893219 AAAGGAAAAGGAATCATTTCAGTTTC 57.107 30.769 11.17 4.67 37.29 2.78
2947 3044 7.899178 TGGTAATATGTTGTACTCAGTGTTG 57.101 36.000 0.00 0.00 0.00 3.33
3009 3110 1.000274 AGTTCTTGAATTTGGCGGTGC 60.000 47.619 0.00 0.00 0.00 5.01
3051 3152 7.129457 TCTCTTATCTGTATTCAGCACCAAT 57.871 36.000 0.00 0.00 41.10 3.16
3052 3153 6.544928 TCTCTTATCTGTATTCAGCACCAA 57.455 37.500 0.00 0.00 41.10 3.67
3151 3252 1.889891 CGGTGTTTGTGTGTGTGTTC 58.110 50.000 0.00 0.00 0.00 3.18
3154 3255 0.109551 TTGCGGTGTTTGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
3155 3256 0.170116 CTTGCGGTGTTTGTGTGTGT 59.830 50.000 0.00 0.00 0.00 3.72
3156 3257 0.449786 TCTTGCGGTGTTTGTGTGTG 59.550 50.000 0.00 0.00 0.00 3.82
3157 3258 1.132262 CTTCTTGCGGTGTTTGTGTGT 59.868 47.619 0.00 0.00 0.00 3.72
3158 3259 1.400142 TCTTCTTGCGGTGTTTGTGTG 59.600 47.619 0.00 0.00 0.00 3.82
3169 3270 5.163622 ACAAATATTGGGATGTCTTCTTGCG 60.164 40.000 0.00 0.00 34.12 4.85
3336 3437 1.827789 GGTTGCCAAGTCCACTGCA 60.828 57.895 0.00 0.00 0.00 4.41
3339 3440 0.036875 GCTAGGTTGCCAAGTCCACT 59.963 55.000 0.00 0.00 0.00 4.00
3341 3442 0.324943 GAGCTAGGTTGCCAAGTCCA 59.675 55.000 0.00 0.00 0.00 4.02
3349 3450 3.189495 GGTTTCAGAAAGAGCTAGGTTGC 59.811 47.826 0.00 0.00 0.00 4.17
3352 3453 4.505742 CCTTGGTTTCAGAAAGAGCTAGGT 60.506 45.833 0.00 0.00 0.00 3.08
3353 3454 4.006319 CCTTGGTTTCAGAAAGAGCTAGG 58.994 47.826 0.00 0.00 0.00 3.02
3364 3465 1.338020 GTTGCAGACCCTTGGTTTCAG 59.662 52.381 0.00 0.00 35.25 3.02
3421 3522 5.867174 TGTAACATATATTTCAGGATCGCGG 59.133 40.000 6.13 0.00 0.00 6.46
3477 3595 2.414559 CCGCACAAGAACAATGATGGAC 60.415 50.000 0.00 0.00 0.00 4.02
3481 3599 5.446143 TTAAACCGCACAAGAACAATGAT 57.554 34.783 0.00 0.00 0.00 2.45
3496 3614 2.660490 CTTGCACACCACATTAAACCG 58.340 47.619 0.00 0.00 0.00 4.44
3529 3647 1.570813 GCCTGAAGCAACAACCAAAC 58.429 50.000 0.00 0.00 42.97 2.93
3559 3677 4.420206 AGAAAAATGGGGAAGAAAGAGGG 58.580 43.478 0.00 0.00 0.00 4.30
3586 3705 3.930848 GACTACCACACCTCATTAAACCG 59.069 47.826 0.00 0.00 0.00 4.44
3589 3708 4.562082 CACGACTACCACACCTCATTAAA 58.438 43.478 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.