Multiple sequence alignment - TraesCS1B01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G327200 chr1B 100.000 3107 0 0 1 3107 553452921 553449815 0.000000e+00 5738.0
1 TraesCS1B01G327200 chr1B 91.732 254 18 3 2645 2896 589055661 589055913 1.770000e-92 350.0
2 TraesCS1B01G327200 chr1D 94.621 2138 69 20 1 2132 410603571 410601474 0.000000e+00 3269.0
3 TraesCS1B01G327200 chr1D 92.164 536 21 8 2131 2645 410601564 410601029 0.000000e+00 737.0
4 TraesCS1B01G327200 chr1D 92.771 166 12 0 2892 3057 410601032 410600867 1.110000e-59 241.0
5 TraesCS1B01G327200 chr1A 94.271 2147 88 9 1 2132 506856589 506854463 0.000000e+00 3251.0
6 TraesCS1B01G327200 chr1A 84.395 801 89 14 1133 1899 7196262 7195464 0.000000e+00 754.0
7 TraesCS1B01G327200 chr1A 90.458 524 24 8 2131 2644 506854553 506854046 0.000000e+00 667.0
8 TraesCS1B01G327200 chr1A 93.258 178 8 3 2932 3107 506849343 506849168 3.070000e-65 259.0
9 TraesCS1B01G327200 chr1A 97.143 35 1 0 2892 2926 506854047 506854013 3.350000e-05 60.2
10 TraesCS1B01G327200 chr4A 80.404 990 191 2 999 1985 111166404 111167393 0.000000e+00 750.0
11 TraesCS1B01G327200 chr4A 91.837 245 19 1 2645 2888 674523389 674523633 1.070000e-89 340.0
12 TraesCS1B01G327200 chr4D 79.940 1002 198 2 999 1997 353698941 353697940 0.000000e+00 734.0
13 TraesCS1B01G327200 chr4D 91.373 255 19 3 2642 2894 331710055 331709802 2.290000e-91 346.0
14 TraesCS1B01G327200 chr4B 79.840 1002 199 2 999 1997 437164071 437163070 0.000000e+00 728.0
15 TraesCS1B01G327200 chr4B 91.797 256 20 1 2641 2895 106786037 106786292 3.810000e-94 355.0
16 TraesCS1B01G327200 chr6B 94.118 238 13 1 2651 2887 352091545 352091782 8.190000e-96 361.0
17 TraesCS1B01G327200 chr6B 93.277 238 14 2 2652 2887 439062328 439062091 1.770000e-92 350.0
18 TraesCS1B01G327200 chr3B 92.800 250 14 3 2642 2889 493121627 493121874 2.950000e-95 359.0
19 TraesCS1B01G327200 chr3B 94.323 229 10 3 2654 2881 519399315 519399089 6.380000e-92 348.0
20 TraesCS1B01G327200 chr5D 93.277 238 14 2 2651 2887 382871728 382871964 1.770000e-92 350.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G327200 chr1B 553449815 553452921 3106 True 5738.000000 5738 100.000000 1 3107 1 chr1B.!!$R1 3106
1 TraesCS1B01G327200 chr1D 410600867 410603571 2704 True 1415.666667 3269 93.185333 1 3057 3 chr1D.!!$R1 3056
2 TraesCS1B01G327200 chr1A 506854013 506856589 2576 True 1326.066667 3251 93.957333 1 2926 3 chr1A.!!$R3 2925
3 TraesCS1B01G327200 chr1A 7195464 7196262 798 True 754.000000 754 84.395000 1133 1899 1 chr1A.!!$R1 766
4 TraesCS1B01G327200 chr4A 111166404 111167393 989 False 750.000000 750 80.404000 999 1985 1 chr4A.!!$F1 986
5 TraesCS1B01G327200 chr4D 353697940 353698941 1001 True 734.000000 734 79.940000 999 1997 1 chr4D.!!$R2 998
6 TraesCS1B01G327200 chr4B 437163070 437164071 1001 True 728.000000 728 79.840000 999 1997 1 chr4B.!!$R1 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 525 0.035152 CTGGATGTTGGTAGCTGCCA 60.035 55.0 20.78 20.78 36.62 4.92 F
508 526 0.035152 TGGATGTTGGTAGCTGCCAG 60.035 55.0 23.30 0.00 40.01 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2174 0.035881 ATCAGCCTATGGATGCACGG 59.964 55.0 0.0 0.0 39.19 4.94 R
2458 2537 0.737019 ATGGAAAAAGGCATTGCGCG 60.737 50.0 0.0 0.0 43.84 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 187 5.234752 ACTCTGTTTGCGTGTTGTATCATA 58.765 37.500 0.00 0.00 0.00 2.15
183 188 5.874810 ACTCTGTTTGCGTGTTGTATCATAT 59.125 36.000 0.00 0.00 0.00 1.78
184 189 7.039270 ACTCTGTTTGCGTGTTGTATCATATA 58.961 34.615 0.00 0.00 0.00 0.86
185 190 7.710907 ACTCTGTTTGCGTGTTGTATCATATAT 59.289 33.333 0.00 0.00 0.00 0.86
202 207 2.470196 TATGTCGCTGTCGTTAGAGC 57.530 50.000 0.00 0.00 38.62 4.09
222 229 3.443681 AGCAAATTGATTTGTAGGTCCGG 59.556 43.478 15.57 0.00 46.63 5.14
243 250 2.839486 TCCTATTATTGCTCTGCCGG 57.161 50.000 0.00 0.00 0.00 6.13
348 355 2.432628 GCTTGTCCTGTCCGTCCG 60.433 66.667 0.00 0.00 0.00 4.79
378 385 0.753111 TCCTGCTGCAGAGCTCGATA 60.753 55.000 30.10 1.60 46.39 2.92
395 402 2.483013 CGATACCTCCGGCTTCATTTCA 60.483 50.000 0.00 0.00 0.00 2.69
405 412 1.734465 GCTTCATTTCACTCTCACCGG 59.266 52.381 0.00 0.00 0.00 5.28
503 521 0.324943 AACGCTGGATGTTGGTAGCT 59.675 50.000 0.00 0.00 34.13 3.32
504 522 0.391661 ACGCTGGATGTTGGTAGCTG 60.392 55.000 0.00 0.00 34.13 4.24
505 523 1.709147 CGCTGGATGTTGGTAGCTGC 61.709 60.000 0.00 0.00 34.13 5.25
506 524 1.379642 GCTGGATGTTGGTAGCTGCC 61.380 60.000 14.87 14.87 33.53 4.85
507 525 0.035152 CTGGATGTTGGTAGCTGCCA 60.035 55.000 20.78 20.78 36.62 4.92
508 526 0.035152 TGGATGTTGGTAGCTGCCAG 60.035 55.000 23.30 0.00 40.01 4.85
539 557 4.737054 CAACAACAGATTGGTAATGGAGC 58.263 43.478 0.00 0.00 40.42 4.70
540 558 4.032960 ACAACAGATTGGTAATGGAGCA 57.967 40.909 0.00 0.00 40.42 4.26
541 559 4.603131 ACAACAGATTGGTAATGGAGCAT 58.397 39.130 0.00 0.00 40.42 3.79
542 560 4.400251 ACAACAGATTGGTAATGGAGCATG 59.600 41.667 0.00 0.00 40.42 4.06
543 561 3.559069 ACAGATTGGTAATGGAGCATGG 58.441 45.455 0.00 0.00 34.92 3.66
544 562 3.202818 ACAGATTGGTAATGGAGCATGGA 59.797 43.478 0.00 0.00 34.92 3.41
545 563 3.819337 CAGATTGGTAATGGAGCATGGAG 59.181 47.826 0.00 0.00 34.92 3.86
546 564 2.734755 TTGGTAATGGAGCATGGAGG 57.265 50.000 0.00 0.00 34.92 4.30
547 565 1.595311 TGGTAATGGAGCATGGAGGT 58.405 50.000 0.00 0.00 0.00 3.85
548 566 1.212688 TGGTAATGGAGCATGGAGGTG 59.787 52.381 0.00 0.00 0.00 4.00
549 567 1.312815 GTAATGGAGCATGGAGGTGC 58.687 55.000 0.00 0.00 45.38 5.01
577 596 0.551131 AGAGGACCCAAGCCAATCCT 60.551 55.000 0.00 0.00 44.49 3.24
689 710 3.119352 GGCCTAGACCTGCATTTTCAAAG 60.119 47.826 0.00 0.00 0.00 2.77
692 713 5.105595 GCCTAGACCTGCATTTTCAAAGAAT 60.106 40.000 0.00 0.00 0.00 2.40
735 756 7.015877 AGAAATGAGTTTACTCGCGAATTTTC 58.984 34.615 11.33 5.39 45.72 2.29
815 836 3.695556 GGTAGGGAATAGATCGAGCTACC 59.304 52.174 13.47 10.58 0.00 3.18
934 955 5.769484 AATTCAGTCATTCTGCATCATCC 57.231 39.130 0.00 0.00 43.32 3.51
1075 1096 3.213402 CCCACGTGGCAAACCGTT 61.213 61.111 29.75 0.00 39.70 4.44
1093 1114 3.418047 CGTTTGGTCAGGAATTACCCTT 58.582 45.455 0.00 0.00 40.05 3.95
1113 1134 3.610040 TGCTACAACATCGTCATCCTT 57.390 42.857 0.00 0.00 0.00 3.36
1323 1344 4.915704 TCGAGTTCACCAAAAACAATGTC 58.084 39.130 0.00 0.00 0.00 3.06
1470 1513 2.657237 CTGCTTCCGACGAACCCT 59.343 61.111 0.00 0.00 0.00 4.34
1482 1525 2.589798 CGAACCCTTATTCGGCTACA 57.410 50.000 0.02 0.00 46.10 2.74
1655 1698 1.775385 CCGGTTTATGGGAATGGCTT 58.225 50.000 0.00 0.00 0.00 4.35
2020 2078 1.999051 CAGCATCGTAACTGGACGC 59.001 57.895 0.13 0.00 42.62 5.19
2072 2130 4.649674 AGCAGATAAGGATCCTACGTTGAA 59.350 41.667 16.55 0.00 31.81 2.69
2073 2131 5.128827 AGCAGATAAGGATCCTACGTTGAAA 59.871 40.000 16.55 0.00 31.81 2.69
2074 2132 5.815740 GCAGATAAGGATCCTACGTTGAAAA 59.184 40.000 16.55 0.00 31.81 2.29
2075 2133 6.018669 GCAGATAAGGATCCTACGTTGAAAAG 60.019 42.308 16.55 0.00 31.81 2.27
2076 2134 6.018669 CAGATAAGGATCCTACGTTGAAAAGC 60.019 42.308 16.55 0.00 31.81 3.51
2077 2135 2.618053 AGGATCCTACGTTGAAAAGCG 58.382 47.619 14.27 0.00 0.00 4.68
2078 2136 1.062148 GGATCCTACGTTGAAAAGCGC 59.938 52.381 3.84 0.00 0.00 5.92
2079 2137 1.730064 GATCCTACGTTGAAAAGCGCA 59.270 47.619 11.47 0.00 0.00 6.09
2080 2138 1.584175 TCCTACGTTGAAAAGCGCAA 58.416 45.000 11.47 0.00 0.00 4.85
2081 2139 1.529438 TCCTACGTTGAAAAGCGCAAG 59.471 47.619 11.47 0.00 43.44 4.01
2082 2140 1.529438 CCTACGTTGAAAAGCGCAAGA 59.471 47.619 11.47 0.00 43.02 3.02
2083 2141 2.159627 CCTACGTTGAAAAGCGCAAGAT 59.840 45.455 11.47 0.00 43.02 2.40
2084 2142 2.316119 ACGTTGAAAAGCGCAAGATC 57.684 45.000 11.47 2.55 43.02 2.75
2085 2143 1.601903 ACGTTGAAAAGCGCAAGATCA 59.398 42.857 11.47 5.57 43.02 2.92
2086 2144 2.032799 ACGTTGAAAAGCGCAAGATCAA 59.967 40.909 11.47 11.84 43.02 2.57
2087 2145 3.042189 CGTTGAAAAGCGCAAGATCAAA 58.958 40.909 11.47 0.00 43.02 2.69
2088 2146 3.118482 CGTTGAAAAGCGCAAGATCAAAG 59.882 43.478 11.47 12.69 43.02 2.77
2089 2147 3.988379 TGAAAAGCGCAAGATCAAAGT 57.012 38.095 11.47 0.00 43.02 2.66
2090 2148 3.631144 TGAAAAGCGCAAGATCAAAGTG 58.369 40.909 11.47 0.00 43.02 3.16
2091 2149 2.056094 AAAGCGCAAGATCAAAGTGC 57.944 45.000 11.47 8.88 43.02 4.40
2092 2150 0.953727 AAGCGCAAGATCAAAGTGCA 59.046 45.000 11.47 0.00 40.99 4.57
2093 2151 0.520404 AGCGCAAGATCAAAGTGCAG 59.480 50.000 11.47 8.38 40.99 4.41
2094 2152 0.455633 GCGCAAGATCAAAGTGCAGG 60.456 55.000 0.30 0.00 38.19 4.85
2095 2153 0.169672 CGCAAGATCAAAGTGCAGGG 59.830 55.000 10.16 0.00 38.19 4.45
2096 2154 0.108945 GCAAGATCAAAGTGCAGGGC 60.109 55.000 0.00 0.00 38.19 5.19
2097 2155 1.250328 CAAGATCAAAGTGCAGGGCA 58.750 50.000 0.00 0.00 35.60 5.36
2098 2156 1.614903 CAAGATCAAAGTGCAGGGCAA 59.385 47.619 0.00 0.00 41.47 4.52
2099 2157 1.999648 AGATCAAAGTGCAGGGCAAA 58.000 45.000 0.00 0.00 41.47 3.68
2100 2158 1.891150 AGATCAAAGTGCAGGGCAAAG 59.109 47.619 0.00 0.00 41.47 2.77
2101 2159 1.615392 GATCAAAGTGCAGGGCAAAGT 59.385 47.619 0.00 0.00 41.47 2.66
2102 2160 1.484038 TCAAAGTGCAGGGCAAAGTT 58.516 45.000 0.00 0.00 41.47 2.66
2103 2161 2.660572 TCAAAGTGCAGGGCAAAGTTA 58.339 42.857 0.00 0.00 41.47 2.24
2104 2162 3.230134 TCAAAGTGCAGGGCAAAGTTAT 58.770 40.909 0.00 0.00 41.47 1.89
2105 2163 4.402829 TCAAAGTGCAGGGCAAAGTTATA 58.597 39.130 0.00 0.00 41.47 0.98
2106 2164 4.830046 TCAAAGTGCAGGGCAAAGTTATAA 59.170 37.500 0.00 0.00 41.47 0.98
2107 2165 5.303078 TCAAAGTGCAGGGCAAAGTTATAAA 59.697 36.000 0.00 0.00 41.47 1.40
2108 2166 4.783764 AGTGCAGGGCAAAGTTATAAAC 57.216 40.909 0.00 0.00 41.47 2.01
2109 2167 4.407365 AGTGCAGGGCAAAGTTATAAACT 58.593 39.130 0.00 0.00 41.47 2.66
2121 2179 5.868043 AGTTATAAACTTTACACCCGTGC 57.132 39.130 0.00 0.00 39.04 5.34
2122 2180 5.307204 AGTTATAAACTTTACACCCGTGCA 58.693 37.500 0.00 0.00 39.04 4.57
2123 2181 5.941647 AGTTATAAACTTTACACCCGTGCAT 59.058 36.000 0.00 0.00 39.04 3.96
2124 2182 4.957759 ATAAACTTTACACCCGTGCATC 57.042 40.909 0.00 0.00 0.00 3.91
2125 2183 1.530323 AACTTTACACCCGTGCATCC 58.470 50.000 0.00 0.00 0.00 3.51
2126 2184 0.398696 ACTTTACACCCGTGCATCCA 59.601 50.000 0.00 0.00 0.00 3.41
2127 2185 1.004277 ACTTTACACCCGTGCATCCAT 59.996 47.619 0.00 0.00 0.00 3.41
2128 2186 2.237643 ACTTTACACCCGTGCATCCATA 59.762 45.455 0.00 0.00 0.00 2.74
2129 2187 2.613026 TTACACCCGTGCATCCATAG 57.387 50.000 0.00 0.00 0.00 2.23
2130 2188 0.756294 TACACCCGTGCATCCATAGG 59.244 55.000 0.00 0.00 0.00 2.57
2131 2189 1.893808 CACCCGTGCATCCATAGGC 60.894 63.158 0.00 0.00 0.00 3.93
2132 2190 2.072487 ACCCGTGCATCCATAGGCT 61.072 57.895 0.00 0.00 32.35 4.58
2133 2191 1.598962 CCCGTGCATCCATAGGCTG 60.599 63.158 0.00 0.00 32.35 4.85
2134 2192 1.447217 CCGTGCATCCATAGGCTGA 59.553 57.895 0.00 0.00 32.35 4.26
2135 2193 0.035881 CCGTGCATCCATAGGCTGAT 59.964 55.000 0.00 0.00 32.35 2.90
2136 2194 1.154197 CGTGCATCCATAGGCTGATG 58.846 55.000 8.53 8.53 41.02 3.07
2137 2195 1.270465 CGTGCATCCATAGGCTGATGA 60.270 52.381 15.31 1.42 40.64 2.92
2138 2196 2.807837 CGTGCATCCATAGGCTGATGAA 60.808 50.000 15.31 4.01 40.64 2.57
2139 2197 2.812591 GTGCATCCATAGGCTGATGAAG 59.187 50.000 15.31 0.00 40.64 3.02
2152 2210 3.666274 CTGATGAAGCAGATGAGGATCC 58.334 50.000 2.48 2.48 38.14 3.36
2153 2211 3.315596 TGATGAAGCAGATGAGGATCCT 58.684 45.455 16.13 16.13 0.00 3.24
2154 2212 4.486839 TGATGAAGCAGATGAGGATCCTA 58.513 43.478 16.16 3.70 0.00 2.94
2155 2213 4.282957 TGATGAAGCAGATGAGGATCCTAC 59.717 45.833 16.16 9.53 0.00 3.18
2156 2214 2.625314 TGAAGCAGATGAGGATCCTACG 59.375 50.000 16.16 2.59 0.00 3.51
2157 2215 2.373335 AGCAGATGAGGATCCTACGT 57.627 50.000 16.16 9.86 0.00 3.57
2158 2216 2.672098 AGCAGATGAGGATCCTACGTT 58.328 47.619 16.16 0.00 0.00 3.99
2159 2217 2.363680 AGCAGATGAGGATCCTACGTTG 59.636 50.000 16.16 12.32 0.00 4.10
2160 2218 2.101582 GCAGATGAGGATCCTACGTTGT 59.898 50.000 16.16 0.00 0.00 3.32
2190 2248 1.660560 ATCGAAGTGCAGGGCAATGC 61.661 55.000 0.00 0.00 46.68 3.56
2210 2268 7.630513 GCAATGCTATAAACTTTACACCCATGT 60.631 37.037 0.00 0.00 43.30 3.21
2244 2302 1.197721 GGAGGCAACAACACGATTCAG 59.802 52.381 0.00 0.00 41.41 3.02
2255 2313 5.639506 ACAACACGATTCAGACCTCAAATAG 59.360 40.000 0.00 0.00 0.00 1.73
2307 2373 4.013050 TGTGTCTTTGATTCCACACAACA 58.987 39.130 1.33 0.00 44.70 3.33
2385 2464 8.352137 TGCCTTTCTTTCTGATGAATTAATGA 57.648 30.769 0.00 0.00 31.56 2.57
2393 2472 7.707624 TTCTGATGAATTAATGAAGGCAGTT 57.292 32.000 0.00 0.00 0.00 3.16
2484 2563 4.803588 GCAATGCCTTTTTCCATCTCCAAA 60.804 41.667 0.00 0.00 0.00 3.28
2494 2573 3.797039 TCCATCTCCAAAATCTAGTGCG 58.203 45.455 0.00 0.00 0.00 5.34
2504 2583 2.656560 ATCTAGTGCGTCACCTTGAC 57.343 50.000 6.39 0.00 43.65 3.18
2540 2619 5.751586 TCCCCTTTGTATCAGTGAATTACC 58.248 41.667 0.00 0.00 0.00 2.85
2645 2733 4.828829 AGTTGCAGTACGTAGCCTTTTAT 58.171 39.130 0.00 0.00 0.00 1.40
2646 2734 5.243207 AGTTGCAGTACGTAGCCTTTTATT 58.757 37.500 0.00 0.00 0.00 1.40
2647 2735 5.704053 AGTTGCAGTACGTAGCCTTTTATTT 59.296 36.000 0.00 0.00 0.00 1.40
2648 2736 6.875195 AGTTGCAGTACGTAGCCTTTTATTTA 59.125 34.615 0.00 0.00 0.00 1.40
2649 2737 7.551617 AGTTGCAGTACGTAGCCTTTTATTTAT 59.448 33.333 0.00 0.00 0.00 1.40
2650 2738 7.241663 TGCAGTACGTAGCCTTTTATTTATG 57.758 36.000 0.00 0.00 0.00 1.90
2651 2739 6.259167 TGCAGTACGTAGCCTTTTATTTATGG 59.741 38.462 0.00 0.00 0.00 2.74
2652 2740 6.656003 CAGTACGTAGCCTTTTATTTATGGC 58.344 40.000 0.00 0.00 45.21 4.40
2666 2754 9.703892 TTTTATTTATGGCAATGATAAATCCCG 57.296 29.630 7.00 0.00 37.27 5.14
2667 2755 8.642935 TTATTTATGGCAATGATAAATCCCGA 57.357 30.769 7.00 0.00 37.27 5.14
2668 2756 6.968263 TTTATGGCAATGATAAATCCCGAA 57.032 33.333 0.00 0.00 0.00 4.30
2669 2757 4.853924 ATGGCAATGATAAATCCCGAAC 57.146 40.909 0.00 0.00 0.00 3.95
2670 2758 2.616376 TGGCAATGATAAATCCCGAACG 59.384 45.455 0.00 0.00 0.00 3.95
2671 2759 2.616842 GGCAATGATAAATCCCGAACGT 59.383 45.455 0.00 0.00 0.00 3.99
2672 2760 3.066203 GGCAATGATAAATCCCGAACGTT 59.934 43.478 0.00 0.00 0.00 3.99
2673 2761 4.279659 GCAATGATAAATCCCGAACGTTC 58.720 43.478 18.47 18.47 0.00 3.95
2685 2773 3.443054 CGAACGTTCGGATTTTAAGCA 57.557 42.857 36.53 0.00 46.30 3.91
2686 2774 3.998522 CGAACGTTCGGATTTTAAGCAT 58.001 40.909 36.53 0.00 46.30 3.79
2687 2775 3.778718 CGAACGTTCGGATTTTAAGCATG 59.221 43.478 36.53 8.97 46.30 4.06
2688 2776 3.757745 ACGTTCGGATTTTAAGCATGG 57.242 42.857 0.00 0.00 0.00 3.66
2689 2777 2.159435 ACGTTCGGATTTTAAGCATGGC 60.159 45.455 0.00 0.00 0.00 4.40
2690 2778 2.159448 CGTTCGGATTTTAAGCATGGCA 60.159 45.455 0.00 0.00 0.00 4.92
2691 2779 3.671971 CGTTCGGATTTTAAGCATGGCAA 60.672 43.478 0.00 0.00 0.00 4.52
2692 2780 3.502191 TCGGATTTTAAGCATGGCAAC 57.498 42.857 0.00 0.00 0.00 4.17
2693 2781 2.165437 TCGGATTTTAAGCATGGCAACC 59.835 45.455 0.00 0.00 0.00 3.77
2694 2782 2.738321 CGGATTTTAAGCATGGCAACCC 60.738 50.000 0.00 0.00 0.00 4.11
2695 2783 2.539476 GATTTTAAGCATGGCAACCCG 58.461 47.619 0.00 0.00 0.00 5.28
2696 2784 1.621992 TTTTAAGCATGGCAACCCGA 58.378 45.000 0.00 0.00 0.00 5.14
2697 2785 1.621992 TTTAAGCATGGCAACCCGAA 58.378 45.000 0.00 0.00 0.00 4.30
2698 2786 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
2699 2787 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
2700 2788 3.361977 GCATGGCAACCCGAACGT 61.362 61.111 0.00 0.00 0.00 3.99
2701 2789 2.914908 GCATGGCAACCCGAACGTT 61.915 57.895 0.00 0.00 0.00 3.99
2702 2790 1.657556 CATGGCAACCCGAACGTTT 59.342 52.632 0.46 0.00 0.00 3.60
2703 2791 0.031449 CATGGCAACCCGAACGTTTT 59.969 50.000 0.46 0.00 0.00 2.43
2704 2792 0.747852 ATGGCAACCCGAACGTTTTT 59.252 45.000 0.46 0.00 0.00 1.94
2725 2813 6.969993 TTTTATGGCAACTTTAGTTCAGGT 57.030 33.333 0.00 0.00 35.83 4.00
2726 2814 5.957842 TTATGGCAACTTTAGTTCAGGTG 57.042 39.130 0.00 0.00 35.83 4.00
2727 2815 3.569194 TGGCAACTTTAGTTCAGGTGA 57.431 42.857 0.00 0.00 35.83 4.02
2728 2816 3.476552 TGGCAACTTTAGTTCAGGTGAG 58.523 45.455 0.00 0.00 35.83 3.51
2729 2817 2.814336 GGCAACTTTAGTTCAGGTGAGG 59.186 50.000 0.00 0.00 35.83 3.86
2730 2818 3.477530 GCAACTTTAGTTCAGGTGAGGT 58.522 45.455 0.00 0.00 35.83 3.85
2731 2819 3.883489 GCAACTTTAGTTCAGGTGAGGTT 59.117 43.478 0.00 0.00 35.83 3.50
2732 2820 4.261197 GCAACTTTAGTTCAGGTGAGGTTG 60.261 45.833 0.00 0.00 35.83 3.77
2733 2821 4.086706 ACTTTAGTTCAGGTGAGGTTGG 57.913 45.455 0.00 0.00 0.00 3.77
2734 2822 2.561478 TTAGTTCAGGTGAGGTTGGC 57.439 50.000 0.00 0.00 0.00 4.52
2735 2823 1.429930 TAGTTCAGGTGAGGTTGGCA 58.570 50.000 0.00 0.00 0.00 4.92
2736 2824 0.550914 AGTTCAGGTGAGGTTGGCAA 59.449 50.000 0.00 0.00 0.00 4.52
2737 2825 1.064017 AGTTCAGGTGAGGTTGGCAAA 60.064 47.619 0.00 0.00 0.00 3.68
2738 2826 1.067060 GTTCAGGTGAGGTTGGCAAAC 59.933 52.381 7.31 7.31 35.40 2.93
2739 2827 0.257328 TCAGGTGAGGTTGGCAAACA 59.743 50.000 18.93 8.37 38.10 2.83
2740 2828 1.133513 TCAGGTGAGGTTGGCAAACAT 60.134 47.619 18.93 0.00 38.10 2.71
2741 2829 1.688197 CAGGTGAGGTTGGCAAACATT 59.312 47.619 18.93 0.00 38.10 2.71
2742 2830 1.688197 AGGTGAGGTTGGCAAACATTG 59.312 47.619 18.93 0.00 38.10 2.82
2791 2879 4.829064 GACAAAGTTGCATGTCCTAACA 57.171 40.909 6.88 0.00 40.00 2.41
2792 2880 5.181690 GACAAAGTTGCATGTCCTAACAA 57.818 39.130 6.88 0.00 40.00 2.83
2793 2881 4.932146 ACAAAGTTGCATGTCCTAACAAC 58.068 39.130 0.00 0.00 42.08 3.32
2797 2885 4.829064 GTTGCATGTCCTAACAACTGAA 57.171 40.909 0.00 0.00 39.30 3.02
2798 2886 4.787598 GTTGCATGTCCTAACAACTGAAG 58.212 43.478 0.00 0.00 39.30 3.02
2799 2887 4.085357 TGCATGTCCTAACAACTGAAGT 57.915 40.909 0.00 0.00 39.30 3.01
2800 2888 4.460263 TGCATGTCCTAACAACTGAAGTT 58.540 39.130 0.00 0.00 39.30 2.66
2810 2898 1.680338 AACTGAAGTTGCCACCTCAC 58.320 50.000 0.00 0.00 36.80 3.51
2811 2899 0.546122 ACTGAAGTTGCCACCTCACA 59.454 50.000 0.00 0.00 0.00 3.58
2812 2900 1.143684 ACTGAAGTTGCCACCTCACAT 59.856 47.619 0.00 0.00 0.00 3.21
2813 2901 1.808945 CTGAAGTTGCCACCTCACATC 59.191 52.381 0.00 0.00 0.00 3.06
2814 2902 1.142667 TGAAGTTGCCACCTCACATCA 59.857 47.619 0.00 0.00 0.00 3.07
2815 2903 2.229792 GAAGTTGCCACCTCACATCAA 58.770 47.619 0.00 0.00 0.00 2.57
2816 2904 1.609208 AGTTGCCACCTCACATCAAC 58.391 50.000 0.00 0.00 37.78 3.18
2817 2905 1.143684 AGTTGCCACCTCACATCAACT 59.856 47.619 0.00 0.00 41.50 3.16
2818 2906 2.371841 AGTTGCCACCTCACATCAACTA 59.628 45.455 4.36 0.00 43.60 2.24
2819 2907 3.146066 GTTGCCACCTCACATCAACTAA 58.854 45.455 0.00 0.00 35.46 2.24
2820 2908 3.500448 TGCCACCTCACATCAACTAAA 57.500 42.857 0.00 0.00 0.00 1.85
2821 2909 3.411446 TGCCACCTCACATCAACTAAAG 58.589 45.455 0.00 0.00 0.00 1.85
2822 2910 3.181445 TGCCACCTCACATCAACTAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
2823 2911 3.821033 GCCACCTCACATCAACTAAAGTT 59.179 43.478 0.00 0.00 39.12 2.66
2837 2925 5.116069 ACTAAAGTTGCCATGTAAAACCG 57.884 39.130 0.00 0.00 0.00 4.44
2838 2926 4.581409 ACTAAAGTTGCCATGTAAAACCGT 59.419 37.500 0.00 0.00 0.00 4.83
2839 2927 4.394439 AAAGTTGCCATGTAAAACCGTT 57.606 36.364 0.00 0.00 0.00 4.44
2840 2928 3.636282 AGTTGCCATGTAAAACCGTTC 57.364 42.857 0.00 0.00 0.00 3.95
2841 2929 2.031508 AGTTGCCATGTAAAACCGTTCG 60.032 45.455 0.00 0.00 0.00 3.95
2842 2930 0.875728 TGCCATGTAAAACCGTTCGG 59.124 50.000 9.81 9.81 0.00 4.30
2843 2931 0.169451 GCCATGTAAAACCGTTCGGG 59.831 55.000 15.66 0.00 43.62 5.14
2844 2932 1.810959 CCATGTAAAACCGTTCGGGA 58.189 50.000 15.66 0.00 39.97 5.14
2845 2933 2.361789 CCATGTAAAACCGTTCGGGAT 58.638 47.619 15.66 1.31 39.97 3.85
2846 2934 2.096819 CCATGTAAAACCGTTCGGGATG 59.903 50.000 15.66 7.22 39.97 3.51
2847 2935 2.835580 TGTAAAACCGTTCGGGATGA 57.164 45.000 15.66 0.00 39.97 2.92
2848 2936 3.123157 TGTAAAACCGTTCGGGATGAA 57.877 42.857 15.66 0.00 39.97 2.57
2849 2937 3.474600 TGTAAAACCGTTCGGGATGAAA 58.525 40.909 15.66 0.00 38.60 2.69
2850 2938 4.073549 TGTAAAACCGTTCGGGATGAAAT 58.926 39.130 15.66 0.00 38.60 2.17
2851 2939 3.569250 AAAACCGTTCGGGATGAAATG 57.431 42.857 15.66 0.00 38.60 2.32
2852 2940 0.808755 AACCGTTCGGGATGAAATGC 59.191 50.000 15.66 0.00 38.60 3.56
2853 2941 0.035439 ACCGTTCGGGATGAAATGCT 60.035 50.000 15.66 0.00 38.60 3.79
2854 2942 1.094785 CCGTTCGGGATGAAATGCTT 58.905 50.000 3.04 0.00 38.60 3.91
2855 2943 2.285083 CCGTTCGGGATGAAATGCTTA 58.715 47.619 3.04 0.00 38.60 3.09
2856 2944 2.680841 CCGTTCGGGATGAAATGCTTAA 59.319 45.455 3.04 0.00 38.60 1.85
2857 2945 3.127895 CCGTTCGGGATGAAATGCTTAAA 59.872 43.478 3.04 0.00 38.60 1.52
2858 2946 4.380023 CCGTTCGGGATGAAATGCTTAAAA 60.380 41.667 3.04 0.00 38.60 1.52
2859 2947 5.339990 CGTTCGGGATGAAATGCTTAAAAT 58.660 37.500 0.00 0.00 38.60 1.82
2860 2948 5.455525 CGTTCGGGATGAAATGCTTAAAATC 59.544 40.000 0.00 0.00 38.60 2.17
2861 2949 5.514274 TCGGGATGAAATGCTTAAAATCC 57.486 39.130 0.00 0.00 33.81 3.01
2862 2950 4.036262 TCGGGATGAAATGCTTAAAATCCG 59.964 41.667 0.00 0.00 35.45 4.18
2863 2951 4.036262 CGGGATGAAATGCTTAAAATCCGA 59.964 41.667 0.00 0.00 35.45 4.55
2864 2952 5.449862 CGGGATGAAATGCTTAAAATCCGAA 60.450 40.000 0.00 0.00 35.45 4.30
2865 2953 5.748630 GGGATGAAATGCTTAAAATCCGAAC 59.251 40.000 0.00 0.00 35.45 3.95
2866 2954 5.455525 GGATGAAATGCTTAAAATCCGAACG 59.544 40.000 0.00 0.00 0.00 3.95
2867 2955 5.365403 TGAAATGCTTAAAATCCGAACGT 57.635 34.783 0.00 0.00 0.00 3.99
2868 2956 5.764131 TGAAATGCTTAAAATCCGAACGTT 58.236 33.333 0.00 0.00 0.00 3.99
2869 2957 5.854338 TGAAATGCTTAAAATCCGAACGTTC 59.146 36.000 18.47 18.47 0.00 3.95
2881 2969 3.214699 CGAACGTTCGGATTTTATCGG 57.785 47.619 36.53 9.59 46.30 4.18
2882 2970 2.034339 CGAACGTTCGGATTTTATCGGG 60.034 50.000 36.53 9.39 46.30 5.14
2883 2971 1.944032 ACGTTCGGATTTTATCGGGG 58.056 50.000 0.00 0.00 0.00 5.73
2884 2972 1.207811 ACGTTCGGATTTTATCGGGGT 59.792 47.619 0.00 0.00 0.00 4.95
2885 2973 1.862827 CGTTCGGATTTTATCGGGGTC 59.137 52.381 0.00 0.00 0.00 4.46
2886 2974 2.216046 GTTCGGATTTTATCGGGGTCC 58.784 52.381 0.00 0.00 0.00 4.46
2887 2975 1.797320 TCGGATTTTATCGGGGTCCT 58.203 50.000 0.00 0.00 0.00 3.85
2888 2976 2.121129 TCGGATTTTATCGGGGTCCTT 58.879 47.619 0.00 0.00 0.00 3.36
2889 2977 2.506644 TCGGATTTTATCGGGGTCCTTT 59.493 45.455 0.00 0.00 0.00 3.11
2890 2978 3.710677 TCGGATTTTATCGGGGTCCTTTA 59.289 43.478 0.00 0.00 0.00 1.85
2891 2979 4.348754 TCGGATTTTATCGGGGTCCTTTAT 59.651 41.667 0.00 0.00 0.00 1.40
2892 2980 5.067954 CGGATTTTATCGGGGTCCTTTATT 58.932 41.667 0.00 0.00 0.00 1.40
2893 2981 5.533528 CGGATTTTATCGGGGTCCTTTATTT 59.466 40.000 0.00 0.00 0.00 1.40
2894 2982 6.711645 CGGATTTTATCGGGGTCCTTTATTTA 59.288 38.462 0.00 0.00 0.00 1.40
2921 3009 5.159209 CCGGTAATACTTTCAGGTATAGCG 58.841 45.833 0.00 0.00 32.76 4.26
2929 3017 5.116882 ACTTTCAGGTATAGCGTGAATTCC 58.883 41.667 2.27 0.00 46.94 3.01
2930 3018 3.364889 TCAGGTATAGCGTGAATTCCG 57.635 47.619 2.27 7.43 38.82 4.30
2940 3028 3.120199 AGCGTGAATTCCGTCATTGAAAG 60.120 43.478 14.86 0.00 0.00 2.62
2974 3062 2.345244 GCATCCCCGATCTCGCAT 59.655 61.111 0.00 0.00 38.18 4.73
2981 3069 1.202651 CCCCGATCTCGCATTACCTTT 60.203 52.381 0.00 0.00 38.18 3.11
2982 3070 2.036733 CCCCGATCTCGCATTACCTTTA 59.963 50.000 0.00 0.00 38.18 1.85
3042 3130 1.603456 TGTGATGCGTTGGTCAATGT 58.397 45.000 5.03 0.00 0.00 2.71
3057 3145 8.448615 GTTGGTCAATGTAACCATTAGTCTAAC 58.551 37.037 0.00 0.00 45.89 2.34
3058 3146 7.913789 TGGTCAATGTAACCATTAGTCTAACT 58.086 34.615 0.00 0.00 41.84 2.24
3059 3147 7.822334 TGGTCAATGTAACCATTAGTCTAACTG 59.178 37.037 0.00 0.00 41.84 3.16
3060 3148 7.280205 GGTCAATGTAACCATTAGTCTAACTGG 59.720 40.741 14.59 14.59 39.28 4.00
3061 3149 6.821665 TCAATGTAACCATTAGTCTAACTGGC 59.178 38.462 15.48 6.00 39.28 4.85
3062 3150 4.751060 TGTAACCATTAGTCTAACTGGCG 58.249 43.478 15.48 0.00 31.72 5.69
3063 3151 2.311124 ACCATTAGTCTAACTGGCGC 57.689 50.000 0.00 0.00 31.72 6.53
3064 3152 1.831736 ACCATTAGTCTAACTGGCGCT 59.168 47.619 7.64 0.00 31.72 5.92
3065 3153 2.205074 CCATTAGTCTAACTGGCGCTG 58.795 52.381 7.64 2.99 0.00 5.18
3066 3154 2.159099 CCATTAGTCTAACTGGCGCTGA 60.159 50.000 7.64 0.00 0.00 4.26
3067 3155 2.941453 TTAGTCTAACTGGCGCTGAG 57.059 50.000 7.64 6.38 0.00 3.35
3068 3156 2.124277 TAGTCTAACTGGCGCTGAGA 57.876 50.000 7.64 0.00 0.00 3.27
3069 3157 1.479709 AGTCTAACTGGCGCTGAGAT 58.520 50.000 7.64 0.84 0.00 2.75
3070 3158 1.827969 AGTCTAACTGGCGCTGAGATT 59.172 47.619 7.64 4.09 0.00 2.40
3071 3159 2.234908 AGTCTAACTGGCGCTGAGATTT 59.765 45.455 7.64 0.00 0.00 2.17
3072 3160 2.605366 GTCTAACTGGCGCTGAGATTTC 59.395 50.000 7.64 0.00 0.00 2.17
3073 3161 2.233676 TCTAACTGGCGCTGAGATTTCA 59.766 45.455 7.64 0.00 0.00 2.69
3074 3162 1.896220 AACTGGCGCTGAGATTTCAA 58.104 45.000 7.64 0.00 31.69 2.69
3075 3163 1.446907 ACTGGCGCTGAGATTTCAAG 58.553 50.000 7.64 0.00 31.69 3.02
3076 3164 1.002430 ACTGGCGCTGAGATTTCAAGA 59.998 47.619 7.64 0.00 31.69 3.02
3077 3165 1.664659 CTGGCGCTGAGATTTCAAGAG 59.335 52.381 7.64 0.00 31.69 2.85
3078 3166 1.276138 TGGCGCTGAGATTTCAAGAGA 59.724 47.619 7.64 0.00 31.69 3.10
3079 3167 2.093288 TGGCGCTGAGATTTCAAGAGAT 60.093 45.455 7.64 0.00 31.69 2.75
3080 3168 3.132824 TGGCGCTGAGATTTCAAGAGATA 59.867 43.478 7.64 0.00 31.69 1.98
3081 3169 4.122776 GGCGCTGAGATTTCAAGAGATAA 58.877 43.478 7.64 0.00 31.69 1.75
3082 3170 4.025313 GGCGCTGAGATTTCAAGAGATAAC 60.025 45.833 7.64 0.00 31.69 1.89
3083 3171 4.025313 GCGCTGAGATTTCAAGAGATAACC 60.025 45.833 0.00 0.00 31.69 2.85
3084 3172 5.355596 CGCTGAGATTTCAAGAGATAACCT 58.644 41.667 0.00 0.00 31.69 3.50
3085 3173 6.507900 CGCTGAGATTTCAAGAGATAACCTA 58.492 40.000 0.00 0.00 31.69 3.08
3086 3174 6.980978 CGCTGAGATTTCAAGAGATAACCTAA 59.019 38.462 0.00 0.00 31.69 2.69
3087 3175 7.168972 CGCTGAGATTTCAAGAGATAACCTAAG 59.831 40.741 0.00 0.00 31.69 2.18
3088 3176 7.042119 GCTGAGATTTCAAGAGATAACCTAAGC 60.042 40.741 0.00 0.00 31.69 3.09
3089 3177 7.851228 TGAGATTTCAAGAGATAACCTAAGCA 58.149 34.615 0.00 0.00 0.00 3.91
3090 3178 7.766278 TGAGATTTCAAGAGATAACCTAAGCAC 59.234 37.037 0.00 0.00 0.00 4.40
3091 3179 7.051000 AGATTTCAAGAGATAACCTAAGCACC 58.949 38.462 0.00 0.00 0.00 5.01
3092 3180 4.755266 TCAAGAGATAACCTAAGCACCC 57.245 45.455 0.00 0.00 0.00 4.61
3093 3181 4.362677 TCAAGAGATAACCTAAGCACCCT 58.637 43.478 0.00 0.00 0.00 4.34
3094 3182 4.162320 TCAAGAGATAACCTAAGCACCCTG 59.838 45.833 0.00 0.00 0.00 4.45
3095 3183 3.995636 AGAGATAACCTAAGCACCCTGA 58.004 45.455 0.00 0.00 0.00 3.86
3096 3184 4.561752 AGAGATAACCTAAGCACCCTGAT 58.438 43.478 0.00 0.00 0.00 2.90
3097 3185 5.716979 AGAGATAACCTAAGCACCCTGATA 58.283 41.667 0.00 0.00 0.00 2.15
3098 3186 5.777732 AGAGATAACCTAAGCACCCTGATAG 59.222 44.000 0.00 0.00 0.00 2.08
3099 3187 5.716979 AGATAACCTAAGCACCCTGATAGA 58.283 41.667 0.00 0.00 0.00 1.98
3100 3188 6.326970 AGATAACCTAAGCACCCTGATAGAT 58.673 40.000 0.00 0.00 0.00 1.98
3101 3189 6.789959 AGATAACCTAAGCACCCTGATAGATT 59.210 38.462 0.00 0.00 0.00 2.40
3102 3190 5.717119 AACCTAAGCACCCTGATAGATTT 57.283 39.130 0.00 0.00 0.00 2.17
3103 3191 5.717119 ACCTAAGCACCCTGATAGATTTT 57.283 39.130 0.00 0.00 0.00 1.82
3104 3192 6.824958 ACCTAAGCACCCTGATAGATTTTA 57.175 37.500 0.00 0.00 0.00 1.52
3105 3193 7.208064 ACCTAAGCACCCTGATAGATTTTAA 57.792 36.000 0.00 0.00 0.00 1.52
3106 3194 7.816411 ACCTAAGCACCCTGATAGATTTTAAT 58.184 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.994756 CCTGGGGTTGGTGGTGGC 62.995 72.222 0.00 0.00 0.00 5.01
132 137 2.011222 TGACGTCAAAGTCAAACCCAC 58.989 47.619 17.62 0.00 46.81 4.61
182 187 2.357952 TGCTCTAACGACAGCGACATAT 59.642 45.455 0.00 0.00 41.64 1.78
183 188 1.741145 TGCTCTAACGACAGCGACATA 59.259 47.619 0.00 0.00 41.64 2.29
184 189 0.526211 TGCTCTAACGACAGCGACAT 59.474 50.000 0.00 0.00 41.64 3.06
185 190 0.312729 TTGCTCTAACGACAGCGACA 59.687 50.000 0.00 0.00 41.64 4.35
202 207 8.119629 TAGGATCCGGACCTACAAATCAATTTG 61.120 40.741 21.81 12.71 43.47 2.32
222 229 3.265791 CCGGCAGAGCAATAATAGGATC 58.734 50.000 0.00 0.00 0.00 3.36
320 327 1.515519 GGACAAGCGCGTCGATACA 60.516 57.895 8.43 0.00 36.73 2.29
395 402 4.379243 CTTGCGCCCGGTGAGAGT 62.379 66.667 4.18 0.00 0.00 3.24
550 568 2.477190 CTTGGGTCCTCTCCCCTGGA 62.477 65.000 0.00 0.00 46.48 3.86
551 569 1.997874 CTTGGGTCCTCTCCCCTGG 60.998 68.421 0.00 0.00 46.48 4.45
552 570 2.674220 GCTTGGGTCCTCTCCCCTG 61.674 68.421 0.00 0.00 46.48 4.45
553 571 2.285743 GCTTGGGTCCTCTCCCCT 60.286 66.667 0.00 0.00 46.48 4.79
554 572 3.412408 GGCTTGGGTCCTCTCCCC 61.412 72.222 0.00 0.00 46.48 4.81
605 624 1.278127 CCAGAACTGTTATGACCCGGT 59.722 52.381 16.16 0.00 0.00 5.28
692 713 8.690203 TCATTTCTATTTCAAGTTGGTCTCAA 57.310 30.769 2.34 0.00 0.00 3.02
832 853 7.062749 ACAAGAGACAGTTGTGGAACTAATA 57.937 36.000 0.00 0.00 40.68 0.98
833 854 5.930135 ACAAGAGACAGTTGTGGAACTAAT 58.070 37.500 0.00 0.00 40.68 1.73
834 855 5.353394 ACAAGAGACAGTTGTGGAACTAA 57.647 39.130 0.00 0.00 40.68 2.24
846 867 0.396811 ACGGGGGAAACAAGAGACAG 59.603 55.000 0.00 0.00 0.00 3.51
934 955 6.142480 GCTTGTTACATAGTACTCGCATGTAG 59.858 42.308 13.89 8.07 36.71 2.74
1075 1096 2.378547 AGCAAGGGTAATTCCTGACCAA 59.621 45.455 0.00 0.00 37.47 3.67
1093 1114 3.056179 TCAAGGATGACGATGTTGTAGCA 60.056 43.478 0.00 0.00 0.00 3.49
1113 1134 1.618837 GAGCAGTAGTCAACCCTGTCA 59.381 52.381 0.00 0.00 0.00 3.58
1655 1698 1.630369 ACAAGTAGCTCCTGGCATTCA 59.370 47.619 0.00 0.00 44.79 2.57
1958 2016 1.004745 CTCCCCAGTAACCAGCATTGT 59.995 52.381 0.00 0.00 0.00 2.71
2020 2078 2.831366 GCGGTGATGAGGCAGCATG 61.831 63.158 0.00 0.00 36.11 4.06
2056 2114 3.000727 CGCTTTTCAACGTAGGATCCTT 58.999 45.455 22.03 0.00 0.00 3.36
2072 2130 1.337703 TGCACTTTGATCTTGCGCTTT 59.662 42.857 9.73 0.00 39.22 3.51
2073 2131 0.953727 TGCACTTTGATCTTGCGCTT 59.046 45.000 9.73 0.00 39.22 4.68
2074 2132 0.520404 CTGCACTTTGATCTTGCGCT 59.480 50.000 9.73 0.00 39.22 5.92
2075 2133 0.455633 CCTGCACTTTGATCTTGCGC 60.456 55.000 0.00 0.00 39.22 6.09
2076 2134 0.169672 CCCTGCACTTTGATCTTGCG 59.830 55.000 0.00 0.00 39.22 4.85
2077 2135 0.108945 GCCCTGCACTTTGATCTTGC 60.109 55.000 0.00 0.00 36.76 4.01
2078 2136 1.250328 TGCCCTGCACTTTGATCTTG 58.750 50.000 0.00 0.00 31.71 3.02
2079 2137 1.999648 TTGCCCTGCACTTTGATCTT 58.000 45.000 0.00 0.00 38.71 2.40
2080 2138 1.891150 CTTTGCCCTGCACTTTGATCT 59.109 47.619 0.00 0.00 38.71 2.75
2081 2139 1.615392 ACTTTGCCCTGCACTTTGATC 59.385 47.619 0.00 0.00 38.71 2.92
2082 2140 1.708341 ACTTTGCCCTGCACTTTGAT 58.292 45.000 0.00 0.00 38.71 2.57
2083 2141 1.484038 AACTTTGCCCTGCACTTTGA 58.516 45.000 0.00 0.00 38.71 2.69
2084 2142 3.665745 ATAACTTTGCCCTGCACTTTG 57.334 42.857 0.00 0.00 38.71 2.77
2085 2143 5.304357 AGTTTATAACTTTGCCCTGCACTTT 59.696 36.000 0.00 0.00 39.04 2.66
2086 2144 4.832823 AGTTTATAACTTTGCCCTGCACTT 59.167 37.500 0.00 0.00 39.04 3.16
2087 2145 4.407365 AGTTTATAACTTTGCCCTGCACT 58.593 39.130 0.00 0.00 39.04 4.40
2088 2146 4.783764 AGTTTATAACTTTGCCCTGCAC 57.216 40.909 0.00 0.00 39.04 4.57
2099 2157 5.307204 TGCACGGGTGTAAAGTTTATAACT 58.693 37.500 7.28 0.00 45.46 2.24
2100 2158 5.610235 TGCACGGGTGTAAAGTTTATAAC 57.390 39.130 0.00 0.00 0.00 1.89
2101 2159 5.354792 GGATGCACGGGTGTAAAGTTTATAA 59.645 40.000 0.00 0.00 0.00 0.98
2102 2160 4.877251 GGATGCACGGGTGTAAAGTTTATA 59.123 41.667 0.00 0.00 0.00 0.98
2103 2161 3.692593 GGATGCACGGGTGTAAAGTTTAT 59.307 43.478 0.00 0.00 0.00 1.40
2104 2162 3.075884 GGATGCACGGGTGTAAAGTTTA 58.924 45.455 0.00 0.00 0.00 2.01
2105 2163 1.883926 GGATGCACGGGTGTAAAGTTT 59.116 47.619 0.00 0.00 0.00 2.66
2106 2164 1.202830 TGGATGCACGGGTGTAAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
2107 2165 0.398696 TGGATGCACGGGTGTAAAGT 59.601 50.000 0.00 0.00 0.00 2.66
2108 2166 1.750193 ATGGATGCACGGGTGTAAAG 58.250 50.000 0.00 0.00 0.00 1.85
2109 2167 2.420827 CCTATGGATGCACGGGTGTAAA 60.421 50.000 0.00 0.00 0.00 2.01
2110 2168 1.140052 CCTATGGATGCACGGGTGTAA 59.860 52.381 0.00 0.00 0.00 2.41
2111 2169 0.756294 CCTATGGATGCACGGGTGTA 59.244 55.000 0.00 0.00 0.00 2.90
2112 2170 1.526887 CCTATGGATGCACGGGTGT 59.473 57.895 0.00 0.00 0.00 4.16
2113 2171 1.893808 GCCTATGGATGCACGGGTG 60.894 63.158 6.53 0.00 0.00 4.61
2114 2172 2.072487 AGCCTATGGATGCACGGGT 61.072 57.895 3.65 3.65 0.00 5.28
2115 2173 1.598962 CAGCCTATGGATGCACGGG 60.599 63.158 6.53 5.00 30.51 5.28
2116 2174 0.035881 ATCAGCCTATGGATGCACGG 59.964 55.000 0.00 0.00 39.19 4.94
2117 2175 1.154197 CATCAGCCTATGGATGCACG 58.846 55.000 0.00 0.00 39.19 5.34
2118 2176 2.556144 TCATCAGCCTATGGATGCAC 57.444 50.000 0.00 0.00 39.19 4.57
2119 2177 2.812983 GCTTCATCAGCCTATGGATGCA 60.813 50.000 0.00 0.00 43.65 3.96
2120 2178 1.811359 GCTTCATCAGCCTATGGATGC 59.189 52.381 0.00 0.00 43.65 3.91
2131 2189 3.325425 AGGATCCTCATCTGCTTCATCAG 59.675 47.826 9.02 0.00 35.46 2.90
2132 2190 3.315596 AGGATCCTCATCTGCTTCATCA 58.684 45.455 9.02 0.00 0.00 3.07
2133 2191 4.617995 CGTAGGATCCTCATCTGCTTCATC 60.618 50.000 20.22 0.00 0.00 2.92
2134 2192 3.257873 CGTAGGATCCTCATCTGCTTCAT 59.742 47.826 20.22 0.00 0.00 2.57
2135 2193 2.625314 CGTAGGATCCTCATCTGCTTCA 59.375 50.000 20.22 0.00 0.00 3.02
2136 2194 2.625790 ACGTAGGATCCTCATCTGCTTC 59.374 50.000 20.22 0.00 0.00 3.86
2137 2195 2.672098 ACGTAGGATCCTCATCTGCTT 58.328 47.619 20.22 0.00 0.00 3.91
2138 2196 2.363680 CAACGTAGGATCCTCATCTGCT 59.636 50.000 20.22 0.00 0.00 4.24
2139 2197 2.101582 ACAACGTAGGATCCTCATCTGC 59.898 50.000 20.22 0.00 0.00 4.26
2140 2198 5.515797 TTACAACGTAGGATCCTCATCTG 57.484 43.478 20.22 14.20 0.00 2.90
2141 2199 5.452077 GCTTTACAACGTAGGATCCTCATCT 60.452 44.000 20.22 0.00 0.00 2.90
2142 2200 4.745620 GCTTTACAACGTAGGATCCTCATC 59.254 45.833 20.22 9.39 0.00 2.92
2143 2201 4.694339 GCTTTACAACGTAGGATCCTCAT 58.306 43.478 20.22 1.43 0.00 2.90
2144 2202 3.428452 CGCTTTACAACGTAGGATCCTCA 60.428 47.826 20.22 1.84 0.00 3.86
2145 2203 3.114065 CGCTTTACAACGTAGGATCCTC 58.886 50.000 20.22 9.30 0.00 3.71
2146 2204 2.737679 GCGCTTTACAACGTAGGATCCT 60.738 50.000 20.48 20.48 0.00 3.24
2147 2205 1.591619 GCGCTTTACAACGTAGGATCC 59.408 52.381 2.48 2.48 0.00 3.36
2148 2206 2.264813 TGCGCTTTACAACGTAGGATC 58.735 47.619 9.73 0.00 0.00 3.36
2149 2207 2.373540 TGCGCTTTACAACGTAGGAT 57.626 45.000 9.73 0.00 0.00 3.24
2150 2208 2.063266 CTTGCGCTTTACAACGTAGGA 58.937 47.619 9.73 0.00 0.00 2.94
2151 2209 2.063266 TCTTGCGCTTTACAACGTAGG 58.937 47.619 9.73 0.00 0.00 3.18
2152 2210 3.539592 CGATCTTGCGCTTTACAACGTAG 60.540 47.826 9.73 0.00 0.00 3.51
2153 2211 2.343246 CGATCTTGCGCTTTACAACGTA 59.657 45.455 9.73 0.00 0.00 3.57
2154 2212 1.126113 CGATCTTGCGCTTTACAACGT 59.874 47.619 9.73 0.00 0.00 3.99
2155 2213 1.388768 TCGATCTTGCGCTTTACAACG 59.611 47.619 9.73 6.31 0.00 4.10
2156 2214 3.120649 ACTTCGATCTTGCGCTTTACAAC 60.121 43.478 9.73 0.00 0.00 3.32
2157 2215 3.064207 ACTTCGATCTTGCGCTTTACAA 58.936 40.909 9.73 0.00 0.00 2.41
2158 2216 2.411748 CACTTCGATCTTGCGCTTTACA 59.588 45.455 9.73 0.00 0.00 2.41
2159 2217 2.784665 GCACTTCGATCTTGCGCTTTAC 60.785 50.000 9.73 0.00 0.00 2.01
2160 2218 1.393539 GCACTTCGATCTTGCGCTTTA 59.606 47.619 9.73 0.00 0.00 1.85
2210 2268 1.352083 GCCTCCTGTGCCTATGGATA 58.648 55.000 0.00 0.00 0.00 2.59
2244 2302 5.046231 AGGAAACTCACTCCTATTTGAGGTC 60.046 44.000 3.79 1.04 38.92 3.85
2255 2313 2.829120 AGTAGCTCAGGAAACTCACTCC 59.171 50.000 0.00 0.00 40.21 3.85
2307 2373 2.738846 CAAAATCTGTGCACTCGTAGCT 59.261 45.455 19.41 0.00 0.00 3.32
2371 2437 8.680903 ACTAAACTGCCTTCATTAATTCATCAG 58.319 33.333 0.00 0.00 0.00 2.90
2372 2438 8.461222 CACTAAACTGCCTTCATTAATTCATCA 58.539 33.333 0.00 0.00 0.00 3.07
2385 2464 3.005791 GCAAATCACCACTAAACTGCCTT 59.994 43.478 0.00 0.00 0.00 4.35
2393 2472 8.856153 TTAAGATGTAAGCAAATCACCACTAA 57.144 30.769 0.00 0.00 0.00 2.24
2458 2537 0.737019 ATGGAAAAAGGCATTGCGCG 60.737 50.000 0.00 0.00 43.84 6.86
2460 2539 2.533266 GAGATGGAAAAAGGCATTGCG 58.467 47.619 1.91 0.00 0.00 4.85
2484 2563 2.960819 GTCAAGGTGACGCACTAGATT 58.039 47.619 0.00 0.00 37.67 2.40
2504 2583 4.833390 ACAAAGGGGATTTTCTCTACGAG 58.167 43.478 0.00 0.00 0.00 4.18
2540 2619 4.396790 GCTATATCCTCGAGTCCAACTAGG 59.603 50.000 12.31 0.00 39.47 3.02
2645 2733 6.514212 CGTTCGGGATTTATCATTGCCATAAA 60.514 38.462 0.00 0.00 31.76 1.40
2646 2734 5.049060 CGTTCGGGATTTATCATTGCCATAA 60.049 40.000 0.00 0.00 0.00 1.90
2647 2735 4.454161 CGTTCGGGATTTATCATTGCCATA 59.546 41.667 0.00 0.00 0.00 2.74
2648 2736 3.253188 CGTTCGGGATTTATCATTGCCAT 59.747 43.478 0.00 0.00 0.00 4.40
2649 2737 2.616376 CGTTCGGGATTTATCATTGCCA 59.384 45.455 0.00 0.00 0.00 4.92
2650 2738 2.616842 ACGTTCGGGATTTATCATTGCC 59.383 45.455 0.00 0.00 0.00 4.52
2651 2739 3.963383 ACGTTCGGGATTTATCATTGC 57.037 42.857 0.00 0.00 0.00 3.56
2652 2740 4.514506 CGAACGTTCGGGATTTATCATTG 58.485 43.478 36.53 8.97 46.30 2.82
2653 2741 4.789095 CGAACGTTCGGGATTTATCATT 57.211 40.909 36.53 0.00 46.30 2.57
2666 2754 4.095610 CCATGCTTAAAATCCGAACGTTC 58.904 43.478 18.47 18.47 0.00 3.95
2667 2755 3.672241 GCCATGCTTAAAATCCGAACGTT 60.672 43.478 0.00 0.00 0.00 3.99
2668 2756 2.159435 GCCATGCTTAAAATCCGAACGT 60.159 45.455 0.00 0.00 0.00 3.99
2669 2757 2.159448 TGCCATGCTTAAAATCCGAACG 60.159 45.455 0.00 0.00 0.00 3.95
2670 2758 3.502191 TGCCATGCTTAAAATCCGAAC 57.498 42.857 0.00 0.00 0.00 3.95
2671 2759 3.367910 GGTTGCCATGCTTAAAATCCGAA 60.368 43.478 0.00 0.00 0.00 4.30
2672 2760 2.165437 GGTTGCCATGCTTAAAATCCGA 59.835 45.455 0.00 0.00 0.00 4.55
2673 2761 2.539476 GGTTGCCATGCTTAAAATCCG 58.461 47.619 0.00 0.00 0.00 4.18
2674 2762 2.738321 CGGGTTGCCATGCTTAAAATCC 60.738 50.000 0.00 0.00 0.00 3.01
2675 2763 2.165437 TCGGGTTGCCATGCTTAAAATC 59.835 45.455 0.00 0.00 0.00 2.17
2676 2764 2.175202 TCGGGTTGCCATGCTTAAAAT 58.825 42.857 0.00 0.00 0.00 1.82
2677 2765 1.621992 TCGGGTTGCCATGCTTAAAA 58.378 45.000 0.00 0.00 0.00 1.52
2678 2766 1.271102 GTTCGGGTTGCCATGCTTAAA 59.729 47.619 0.00 0.00 0.00 1.52
2679 2767 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
2680 2768 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
2681 2769 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
2682 2770 3.055719 CGTTCGGGTTGCCATGCT 61.056 61.111 0.00 0.00 0.00 3.79
2683 2771 2.414840 AAACGTTCGGGTTGCCATGC 62.415 55.000 0.00 0.00 0.00 4.06
2684 2772 0.031449 AAAACGTTCGGGTTGCCATG 59.969 50.000 0.00 0.00 0.00 3.66
2685 2773 0.747852 AAAAACGTTCGGGTTGCCAT 59.252 45.000 0.00 0.00 0.00 4.40
2686 2774 2.190756 AAAAACGTTCGGGTTGCCA 58.809 47.368 0.00 0.00 0.00 4.92
2701 2789 7.068839 TCACCTGAACTAAAGTTGCCATAAAAA 59.931 33.333 0.00 0.00 38.56 1.94
2702 2790 6.547880 TCACCTGAACTAAAGTTGCCATAAAA 59.452 34.615 0.00 0.00 38.56 1.52
2703 2791 6.065374 TCACCTGAACTAAAGTTGCCATAAA 58.935 36.000 0.00 0.00 38.56 1.40
2704 2792 5.626142 TCACCTGAACTAAAGTTGCCATAA 58.374 37.500 0.00 0.00 38.56 1.90
2705 2793 5.235850 TCACCTGAACTAAAGTTGCCATA 57.764 39.130 0.00 0.00 38.56 2.74
2706 2794 4.074970 CTCACCTGAACTAAAGTTGCCAT 58.925 43.478 0.00 0.00 38.56 4.40
2707 2795 3.476552 CTCACCTGAACTAAAGTTGCCA 58.523 45.455 0.00 0.00 38.56 4.92
2708 2796 2.814336 CCTCACCTGAACTAAAGTTGCC 59.186 50.000 0.00 0.00 38.56 4.52
2709 2797 3.477530 ACCTCACCTGAACTAAAGTTGC 58.522 45.455 0.00 0.00 38.56 4.17
2710 2798 4.275936 CCAACCTCACCTGAACTAAAGTTG 59.724 45.833 0.00 0.00 38.56 3.16
2711 2799 4.461198 CCAACCTCACCTGAACTAAAGTT 58.539 43.478 0.00 0.00 41.64 2.66
2712 2800 3.747708 GCCAACCTCACCTGAACTAAAGT 60.748 47.826 0.00 0.00 0.00 2.66
2713 2801 2.814336 GCCAACCTCACCTGAACTAAAG 59.186 50.000 0.00 0.00 0.00 1.85
2714 2802 2.173782 TGCCAACCTCACCTGAACTAAA 59.826 45.455 0.00 0.00 0.00 1.85
2715 2803 1.771854 TGCCAACCTCACCTGAACTAA 59.228 47.619 0.00 0.00 0.00 2.24
2716 2804 1.429930 TGCCAACCTCACCTGAACTA 58.570 50.000 0.00 0.00 0.00 2.24
2717 2805 0.550914 TTGCCAACCTCACCTGAACT 59.449 50.000 0.00 0.00 0.00 3.01
2718 2806 1.067060 GTTTGCCAACCTCACCTGAAC 59.933 52.381 0.00 0.00 0.00 3.18
2719 2807 1.341482 TGTTTGCCAACCTCACCTGAA 60.341 47.619 0.00 0.00 31.02 3.02
2720 2808 0.257328 TGTTTGCCAACCTCACCTGA 59.743 50.000 0.00 0.00 31.02 3.86
2721 2809 1.331214 ATGTTTGCCAACCTCACCTG 58.669 50.000 0.00 0.00 31.02 4.00
2722 2810 1.688197 CAATGTTTGCCAACCTCACCT 59.312 47.619 0.00 0.00 31.02 4.00
2723 2811 2.153366 CAATGTTTGCCAACCTCACC 57.847 50.000 0.00 0.00 31.02 4.02
2757 2845 4.397730 GCAACTTTGTCCCAATTGGTTTTT 59.602 37.500 22.91 3.70 34.77 1.94
2758 2846 3.944650 GCAACTTTGTCCCAATTGGTTTT 59.055 39.130 22.91 2.71 34.77 2.43
2759 2847 3.054802 TGCAACTTTGTCCCAATTGGTTT 60.055 39.130 22.91 2.05 34.77 3.27
2760 2848 2.503356 TGCAACTTTGTCCCAATTGGTT 59.497 40.909 22.91 6.09 34.77 3.67
2761 2849 2.114616 TGCAACTTTGTCCCAATTGGT 58.885 42.857 22.91 0.00 34.77 3.67
2762 2850 2.906691 TGCAACTTTGTCCCAATTGG 57.093 45.000 18.21 18.21 0.00 3.16
2763 2851 3.731089 ACATGCAACTTTGTCCCAATTG 58.269 40.909 0.00 0.00 0.00 2.32
2764 2852 3.993920 GACATGCAACTTTGTCCCAATT 58.006 40.909 6.88 0.00 36.98 2.32
2765 2853 3.665745 GACATGCAACTTTGTCCCAAT 57.334 42.857 6.88 0.00 36.98 3.16
2770 2858 4.829064 TGTTAGGACATGCAACTTTGTC 57.171 40.909 9.26 9.26 41.19 3.18
2771 2859 4.644685 AGTTGTTAGGACATGCAACTTTGT 59.355 37.500 7.95 0.00 46.18 2.83
2772 2860 4.977963 CAGTTGTTAGGACATGCAACTTTG 59.022 41.667 10.33 0.00 46.18 2.77
2773 2861 4.887071 TCAGTTGTTAGGACATGCAACTTT 59.113 37.500 10.33 0.00 46.18 2.66
2774 2862 4.460263 TCAGTTGTTAGGACATGCAACTT 58.540 39.130 10.33 0.00 46.18 2.66
2776 2864 4.275936 ACTTCAGTTGTTAGGACATGCAAC 59.724 41.667 0.00 0.00 40.83 4.17
2777 2865 4.460263 ACTTCAGTTGTTAGGACATGCAA 58.540 39.130 0.00 0.00 35.29 4.08
2778 2866 4.085357 ACTTCAGTTGTTAGGACATGCA 57.915 40.909 0.00 0.00 35.29 3.96
2791 2879 1.064758 TGTGAGGTGGCAACTTCAGTT 60.065 47.619 6.46 0.00 42.49 3.16
2792 2880 0.546122 TGTGAGGTGGCAACTTCAGT 59.454 50.000 6.46 0.00 42.49 3.41
2793 2881 1.808945 GATGTGAGGTGGCAACTTCAG 59.191 52.381 6.46 0.00 42.49 3.02
2794 2882 1.142667 TGATGTGAGGTGGCAACTTCA 59.857 47.619 6.46 10.20 39.87 3.02
2795 2883 1.896220 TGATGTGAGGTGGCAACTTC 58.104 50.000 6.46 0.00 33.13 3.01
2796 2884 1.956477 GTTGATGTGAGGTGGCAACTT 59.044 47.619 6.46 0.00 36.73 2.66
2797 2885 1.143684 AGTTGATGTGAGGTGGCAACT 59.856 47.619 3.75 3.75 42.92 3.16
2798 2886 1.609208 AGTTGATGTGAGGTGGCAAC 58.391 50.000 0.00 0.00 39.17 4.17
2799 2887 3.500448 TTAGTTGATGTGAGGTGGCAA 57.500 42.857 0.00 0.00 0.00 4.52
2800 2888 3.181445 ACTTTAGTTGATGTGAGGTGGCA 60.181 43.478 0.00 0.00 0.00 4.92
2801 2889 3.412386 ACTTTAGTTGATGTGAGGTGGC 58.588 45.455 0.00 0.00 0.00 5.01
2814 2902 5.068067 ACGGTTTTACATGGCAACTTTAGTT 59.932 36.000 0.00 0.00 39.12 2.24
2815 2903 4.581409 ACGGTTTTACATGGCAACTTTAGT 59.419 37.500 0.00 0.00 37.61 2.24
2816 2904 5.116069 ACGGTTTTACATGGCAACTTTAG 57.884 39.130 0.00 0.00 37.61 1.85
2817 2905 5.517322 AACGGTTTTACATGGCAACTTTA 57.483 34.783 0.00 0.00 37.61 1.85
2818 2906 4.364860 GAACGGTTTTACATGGCAACTTT 58.635 39.130 0.00 0.00 37.61 2.66
2819 2907 3.549221 CGAACGGTTTTACATGGCAACTT 60.549 43.478 0.00 0.00 37.61 2.66
2820 2908 2.031508 CGAACGGTTTTACATGGCAACT 60.032 45.455 0.00 0.00 37.61 3.16
2821 2909 2.312348 CGAACGGTTTTACATGGCAAC 58.688 47.619 0.00 0.00 0.00 4.17
2822 2910 1.267261 CCGAACGGTTTTACATGGCAA 59.733 47.619 4.99 0.00 0.00 4.52
2823 2911 0.875728 CCGAACGGTTTTACATGGCA 59.124 50.000 4.99 0.00 0.00 4.92
2824 2912 0.169451 CCCGAACGGTTTTACATGGC 59.831 55.000 12.23 0.00 0.00 4.40
2825 2913 1.810959 TCCCGAACGGTTTTACATGG 58.189 50.000 12.23 0.00 0.00 3.66
2826 2914 3.004171 TCATCCCGAACGGTTTTACATG 58.996 45.455 12.23 0.00 0.00 3.21
2827 2915 3.337694 TCATCCCGAACGGTTTTACAT 57.662 42.857 12.23 0.00 0.00 2.29
2828 2916 2.835580 TCATCCCGAACGGTTTTACA 57.164 45.000 12.23 0.00 0.00 2.41
2829 2917 4.408694 CATTTCATCCCGAACGGTTTTAC 58.591 43.478 12.23 0.00 31.73 2.01
2830 2918 3.119779 GCATTTCATCCCGAACGGTTTTA 60.120 43.478 12.23 0.00 31.73 1.52
2831 2919 2.352323 GCATTTCATCCCGAACGGTTTT 60.352 45.455 12.23 0.00 31.73 2.43
2832 2920 1.201414 GCATTTCATCCCGAACGGTTT 59.799 47.619 12.23 0.00 31.73 3.27
2833 2921 0.808755 GCATTTCATCCCGAACGGTT 59.191 50.000 12.23 0.00 31.73 4.44
2834 2922 0.035439 AGCATTTCATCCCGAACGGT 60.035 50.000 12.23 0.00 31.73 4.83
2835 2923 1.094785 AAGCATTTCATCCCGAACGG 58.905 50.000 6.25 6.25 31.73 4.44
2836 2924 4.349663 TTTAAGCATTTCATCCCGAACG 57.650 40.909 0.00 0.00 31.73 3.95
2837 2925 5.748630 GGATTTTAAGCATTTCATCCCGAAC 59.251 40.000 0.00 0.00 31.73 3.95
2838 2926 5.449862 CGGATTTTAAGCATTTCATCCCGAA 60.450 40.000 0.00 0.00 0.00 4.30
2839 2927 4.036262 CGGATTTTAAGCATTTCATCCCGA 59.964 41.667 0.00 0.00 0.00 5.14
2840 2928 4.036262 TCGGATTTTAAGCATTTCATCCCG 59.964 41.667 0.00 0.00 0.00 5.14
2841 2929 5.514274 TCGGATTTTAAGCATTTCATCCC 57.486 39.130 0.00 0.00 0.00 3.85
2842 2930 5.455525 CGTTCGGATTTTAAGCATTTCATCC 59.544 40.000 0.00 0.00 0.00 3.51
2843 2931 6.027749 ACGTTCGGATTTTAAGCATTTCATC 58.972 36.000 0.00 0.00 0.00 2.92
2844 2932 5.949735 ACGTTCGGATTTTAAGCATTTCAT 58.050 33.333 0.00 0.00 0.00 2.57
2845 2933 5.365403 ACGTTCGGATTTTAAGCATTTCA 57.635 34.783 0.00 0.00 0.00 2.69
2846 2934 5.002189 CGAACGTTCGGATTTTAAGCATTTC 59.998 40.000 36.53 2.01 46.30 2.17
2847 2935 4.849383 CGAACGTTCGGATTTTAAGCATTT 59.151 37.500 36.53 0.00 46.30 2.32
2848 2936 4.399978 CGAACGTTCGGATTTTAAGCATT 58.600 39.130 36.53 0.00 46.30 3.56
2849 2937 3.998522 CGAACGTTCGGATTTTAAGCAT 58.001 40.909 36.53 0.00 46.30 3.79
2850 2938 3.443054 CGAACGTTCGGATTTTAAGCA 57.557 42.857 36.53 0.00 46.30 3.91
2862 2950 2.286025 CCCCGATAAAATCCGAACGTTC 59.714 50.000 18.47 18.47 0.00 3.95
2863 2951 2.282407 CCCCGATAAAATCCGAACGTT 58.718 47.619 0.00 0.00 0.00 3.99
2864 2952 1.207811 ACCCCGATAAAATCCGAACGT 59.792 47.619 0.00 0.00 0.00 3.99
2865 2953 1.862827 GACCCCGATAAAATCCGAACG 59.137 52.381 0.00 0.00 0.00 3.95
2866 2954 2.158856 AGGACCCCGATAAAATCCGAAC 60.159 50.000 0.00 0.00 34.46 3.95
2867 2955 2.121129 AGGACCCCGATAAAATCCGAA 58.879 47.619 0.00 0.00 34.46 4.30
2868 2956 1.797320 AGGACCCCGATAAAATCCGA 58.203 50.000 0.00 0.00 34.46 4.55
2869 2957 2.632987 AAGGACCCCGATAAAATCCG 57.367 50.000 0.00 0.00 34.46 4.18
2870 2958 6.971726 AAATAAAGGACCCCGATAAAATCC 57.028 37.500 0.00 0.00 0.00 3.01
2886 2974 8.895737 TGAAAGTATTACCGGCCTTAAATAAAG 58.104 33.333 0.00 0.00 34.73 1.85
2887 2975 8.804912 TGAAAGTATTACCGGCCTTAAATAAA 57.195 30.769 0.00 0.00 0.00 1.40
2888 2976 7.499895 CCTGAAAGTATTACCGGCCTTAAATAA 59.500 37.037 0.00 0.00 0.00 1.40
2889 2977 6.993902 CCTGAAAGTATTACCGGCCTTAAATA 59.006 38.462 0.00 0.00 0.00 1.40
2890 2978 5.826208 CCTGAAAGTATTACCGGCCTTAAAT 59.174 40.000 0.00 0.00 0.00 1.40
2891 2979 5.187687 CCTGAAAGTATTACCGGCCTTAAA 58.812 41.667 0.00 0.00 0.00 1.52
2892 2980 4.225717 ACCTGAAAGTATTACCGGCCTTAA 59.774 41.667 0.00 0.00 0.00 1.85
2893 2981 3.776417 ACCTGAAAGTATTACCGGCCTTA 59.224 43.478 0.00 0.00 0.00 2.69
2894 2982 2.574824 ACCTGAAAGTATTACCGGCCTT 59.425 45.455 0.00 0.00 0.00 4.35
2921 3009 5.613358 AGACTTTCAATGACGGAATTCAC 57.387 39.130 7.93 0.00 0.00 3.18
2929 3017 7.810282 CCTATGGAGTATAGACTTTCAATGACG 59.190 40.741 0.00 0.00 41.10 4.35
2930 3018 8.091449 CCCTATGGAGTATAGACTTTCAATGAC 58.909 40.741 0.00 0.00 41.10 3.06
2940 3028 3.707102 GGATGCCCCTATGGAGTATAGAC 59.293 52.174 0.00 0.00 41.10 2.59
3042 3130 3.449737 AGCGCCAGTTAGACTAATGGTTA 59.550 43.478 2.29 0.00 35.17 2.85
3057 3145 1.664659 CTCTTGAAATCTCAGCGCCAG 59.335 52.381 2.29 0.00 31.69 4.85
3058 3146 1.276138 TCTCTTGAAATCTCAGCGCCA 59.724 47.619 2.29 0.00 31.69 5.69
3059 3147 2.015736 TCTCTTGAAATCTCAGCGCC 57.984 50.000 2.29 0.00 31.69 6.53
3060 3148 4.025313 GGTTATCTCTTGAAATCTCAGCGC 60.025 45.833 0.00 0.00 31.69 5.92
3061 3149 5.355596 AGGTTATCTCTTGAAATCTCAGCG 58.644 41.667 0.00 0.00 31.69 5.18
3062 3150 7.042119 GCTTAGGTTATCTCTTGAAATCTCAGC 60.042 40.741 0.00 0.00 31.69 4.26
3063 3151 7.984050 TGCTTAGGTTATCTCTTGAAATCTCAG 59.016 37.037 0.00 0.00 31.69 3.35
3064 3152 7.766278 GTGCTTAGGTTATCTCTTGAAATCTCA 59.234 37.037 0.00 0.00 0.00 3.27
3065 3153 7.225734 GGTGCTTAGGTTATCTCTTGAAATCTC 59.774 40.741 0.00 0.00 0.00 2.75
3066 3154 7.051000 GGTGCTTAGGTTATCTCTTGAAATCT 58.949 38.462 0.00 0.00 0.00 2.40
3067 3155 6.261158 GGGTGCTTAGGTTATCTCTTGAAATC 59.739 42.308 0.00 0.00 0.00 2.17
3068 3156 6.069381 AGGGTGCTTAGGTTATCTCTTGAAAT 60.069 38.462 0.00 0.00 0.00 2.17
3069 3157 5.250774 AGGGTGCTTAGGTTATCTCTTGAAA 59.749 40.000 0.00 0.00 0.00 2.69
3070 3158 4.783227 AGGGTGCTTAGGTTATCTCTTGAA 59.217 41.667 0.00 0.00 0.00 2.69
3071 3159 4.162320 CAGGGTGCTTAGGTTATCTCTTGA 59.838 45.833 0.00 0.00 0.00 3.02
3072 3160 4.162320 TCAGGGTGCTTAGGTTATCTCTTG 59.838 45.833 0.00 0.00 0.00 3.02
3073 3161 4.362677 TCAGGGTGCTTAGGTTATCTCTT 58.637 43.478 0.00 0.00 0.00 2.85
3074 3162 3.995636 TCAGGGTGCTTAGGTTATCTCT 58.004 45.455 0.00 0.00 0.00 3.10
3075 3163 4.965200 ATCAGGGTGCTTAGGTTATCTC 57.035 45.455 0.00 0.00 0.00 2.75
3076 3164 5.716979 TCTATCAGGGTGCTTAGGTTATCT 58.283 41.667 0.00 0.00 0.00 1.98
3077 3165 6.613153 ATCTATCAGGGTGCTTAGGTTATC 57.387 41.667 0.00 0.00 0.00 1.75
3078 3166 7.394144 AAATCTATCAGGGTGCTTAGGTTAT 57.606 36.000 0.00 0.00 0.00 1.89
3079 3167 6.824958 AAATCTATCAGGGTGCTTAGGTTA 57.175 37.500 0.00 0.00 0.00 2.85
3080 3168 5.717119 AAATCTATCAGGGTGCTTAGGTT 57.283 39.130 0.00 0.00 0.00 3.50
3081 3169 5.717119 AAAATCTATCAGGGTGCTTAGGT 57.283 39.130 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.