Multiple sequence alignment - TraesCS1B01G319300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G319300 chr1B 100.000 2453 0 0 1 2453 543497674 543495222 0.000000e+00 4530
1 TraesCS1B01G319300 chr1A 87.471 1708 105 33 809 2453 499784115 499782454 0.000000e+00 1868
2 TraesCS1B01G319300 chr1A 91.538 260 17 4 465 723 499784459 499784204 1.080000e-93 353
3 TraesCS1B01G319300 chr1A 79.350 431 18 26 1 362 499784938 499784510 1.130000e-58 237
4 TraesCS1B01G319300 chr1D 91.895 1024 40 21 809 1813 404137549 404136550 0.000000e+00 1391
5 TraesCS1B01G319300 chr1D 85.502 607 67 13 1863 2453 404135947 404135346 4.480000e-172 614
6 TraesCS1B01G319300 chr1D 92.701 137 3 1 1 130 404138200 404138064 8.950000e-45 191
7 TraesCS1B01G319300 chr1D 78.715 249 22 9 132 352 404138028 404137783 1.180000e-28 137
8 TraesCS1B01G319300 chr1D 95.385 65 3 0 492 556 404137784 404137720 1.200000e-18 104
9 TraesCS1B01G319300 chr4A 81.967 122 16 6 1851 1969 587205981 587206099 5.580000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G319300 chr1B 543495222 543497674 2452 True 4530.000000 4530 100.000000 1 2453 1 chr1B.!!$R1 2452
1 TraesCS1B01G319300 chr1A 499782454 499784938 2484 True 819.333333 1868 86.119667 1 2453 3 chr1A.!!$R1 2452
2 TraesCS1B01G319300 chr1D 404135346 404138200 2854 True 487.400000 1391 88.839600 1 2453 5 chr1D.!!$R1 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 291 0.03759 TGCTGGCCGGAAGTACATTT 59.962 50.0 18.31 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1671 0.534203 TTTCCTCACCGGACAACAGC 60.534 55.0 9.46 0.0 42.97 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 78 0.537371 ACTGTTGCCTGTTGGGTAGC 60.537 55.000 0.00 0.00 37.43 3.58
116 131 2.769621 TGGGGAGCAGCATCGGAT 60.770 61.111 0.00 0.00 0.00 4.18
130 148 4.163458 AGCATCGGATTTACCTGGTTTCTA 59.837 41.667 3.84 0.00 36.31 2.10
181 234 1.586154 AATCTCGGTTTTGCCCTGCG 61.586 55.000 0.00 0.00 0.00 5.18
188 241 2.430610 TTTTGCCCTGCGGTTTGCT 61.431 52.632 0.00 0.00 46.63 3.91
192 245 2.265182 GCCCTGCGGTTTGCTTGTA 61.265 57.895 0.00 0.00 46.63 2.41
226 291 0.037590 TGCTGGCCGGAAGTACATTT 59.962 50.000 18.31 0.00 0.00 2.32
228 293 1.135402 GCTGGCCGGAAGTACATTTTG 60.135 52.381 18.31 0.00 0.00 2.44
253 318 0.609151 TCCATTTGGCATGCTTGGTG 59.391 50.000 18.92 11.55 34.44 4.17
254 319 0.391927 CCATTTGGCATGCTTGGTGG 60.392 55.000 18.92 16.42 0.00 4.61
256 321 1.549620 CATTTGGCATGCTTGGTGGTA 59.450 47.619 18.92 0.00 0.00 3.25
258 323 0.403655 TTGGCATGCTTGGTGGTAGA 59.596 50.000 18.92 0.00 0.00 2.59
259 324 0.322456 TGGCATGCTTGGTGGTAGAC 60.322 55.000 18.92 0.00 0.00 2.59
296 382 2.255252 GCGCTGGTGCAAATTCGT 59.745 55.556 0.00 0.00 39.64 3.85
301 387 1.001378 GCTGGTGCAAATTCGTCTTGT 60.001 47.619 0.00 0.00 39.41 3.16
304 393 3.734463 TGGTGCAAATTCGTCTTGTAGA 58.266 40.909 0.00 0.00 0.00 2.59
362 459 3.002042 CAGCTGCATTGTCGGAATCTAAG 59.998 47.826 0.00 0.00 0.00 2.18
363 460 2.289002 GCTGCATTGTCGGAATCTAAGG 59.711 50.000 0.00 0.00 0.00 2.69
364 461 2.288666 TGCATTGTCGGAATCTAAGGC 58.711 47.619 0.00 0.00 0.00 4.35
365 462 1.604278 GCATTGTCGGAATCTAAGGCC 59.396 52.381 0.00 0.00 0.00 5.19
366 463 2.746472 GCATTGTCGGAATCTAAGGCCT 60.746 50.000 0.00 0.00 0.00 5.19
368 465 0.830648 TGTCGGAATCTAAGGCCTGG 59.169 55.000 5.69 2.11 0.00 4.45
370 467 1.209747 GTCGGAATCTAAGGCCTGGTT 59.790 52.381 5.69 0.00 0.00 3.67
372 469 1.475213 CGGAATCTAAGGCCTGGTTCC 60.475 57.143 20.60 20.60 33.49 3.62
373 470 1.133761 GGAATCTAAGGCCTGGTTCCC 60.134 57.143 20.08 8.78 31.23 3.97
382 479 4.423231 CTGGTTCCCAGCTTTCCC 57.577 61.111 0.00 0.00 45.13 3.97
383 480 1.460255 CTGGTTCCCAGCTTTCCCA 59.540 57.895 0.00 0.00 45.13 4.37
384 481 0.040204 CTGGTTCCCAGCTTTCCCAT 59.960 55.000 0.00 0.00 45.13 4.00
385 482 1.284785 CTGGTTCCCAGCTTTCCCATA 59.715 52.381 0.00 0.00 45.13 2.74
386 483 1.713647 TGGTTCCCAGCTTTCCCATAA 59.286 47.619 0.00 0.00 0.00 1.90
389 486 3.017442 GTTCCCAGCTTTCCCATAAGTC 58.983 50.000 0.00 0.00 0.00 3.01
390 487 1.209504 TCCCAGCTTTCCCATAAGTCG 59.790 52.381 0.00 0.00 0.00 4.18
391 488 1.017387 CCAGCTTTCCCATAAGTCGC 58.983 55.000 0.00 0.00 0.00 5.19
395 492 1.954927 CTTTCCCATAAGTCGCCTCC 58.045 55.000 0.00 0.00 0.00 4.30
396 493 0.544697 TTTCCCATAAGTCGCCTCCC 59.455 55.000 0.00 0.00 0.00 4.30
397 494 0.326238 TTCCCATAAGTCGCCTCCCT 60.326 55.000 0.00 0.00 0.00 4.20
398 495 0.759436 TCCCATAAGTCGCCTCCCTC 60.759 60.000 0.00 0.00 0.00 4.30
399 496 1.048724 CCCATAAGTCGCCTCCCTCA 61.049 60.000 0.00 0.00 0.00 3.86
400 497 1.051812 CCATAAGTCGCCTCCCTCAT 58.948 55.000 0.00 0.00 0.00 2.90
401 498 1.417890 CCATAAGTCGCCTCCCTCATT 59.582 52.381 0.00 0.00 0.00 2.57
402 499 2.548920 CCATAAGTCGCCTCCCTCATTC 60.549 54.545 0.00 0.00 0.00 2.67
403 500 1.860641 TAAGTCGCCTCCCTCATTCA 58.139 50.000 0.00 0.00 0.00 2.57
406 503 0.460987 GTCGCCTCCCTCATTCACTG 60.461 60.000 0.00 0.00 0.00 3.66
407 504 0.614697 TCGCCTCCCTCATTCACTGA 60.615 55.000 0.00 0.00 0.00 3.41
414 511 3.857217 CTCATTCACTGAGGCTGCT 57.143 52.632 0.00 0.00 46.52 4.24
415 512 1.370609 CTCATTCACTGAGGCTGCTG 58.629 55.000 0.00 0.00 46.52 4.41
416 513 0.978907 TCATTCACTGAGGCTGCTGA 59.021 50.000 0.00 0.00 0.00 4.26
417 514 1.066358 TCATTCACTGAGGCTGCTGAG 60.066 52.381 0.00 0.00 0.00 3.35
418 515 0.252479 ATTCACTGAGGCTGCTGAGG 59.748 55.000 0.00 0.00 0.00 3.86
419 516 0.833409 TTCACTGAGGCTGCTGAGGA 60.833 55.000 0.00 0.00 0.00 3.71
420 517 1.218585 CACTGAGGCTGCTGAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
421 518 1.078166 ACTGAGGCTGCTGAGGAGA 59.922 57.895 4.75 0.00 0.00 3.71
422 519 0.971959 ACTGAGGCTGCTGAGGAGAG 60.972 60.000 4.75 0.00 0.00 3.20
423 520 0.683828 CTGAGGCTGCTGAGGAGAGA 60.684 60.000 4.75 0.00 0.00 3.10
424 521 0.969917 TGAGGCTGCTGAGGAGAGAC 60.970 60.000 4.75 0.00 0.00 3.36
425 522 0.969917 GAGGCTGCTGAGGAGAGACA 60.970 60.000 4.75 0.00 0.00 3.41
426 523 0.971959 AGGCTGCTGAGGAGAGACAG 60.972 60.000 4.75 0.00 37.22 3.51
454 551 5.585820 TTTTTAAGCCGGTCAAAAGAACT 57.414 34.783 1.90 0.00 0.00 3.01
455 552 4.561735 TTTAAGCCGGTCAAAAGAACTG 57.438 40.909 1.90 0.00 0.00 3.16
456 553 0.668535 AAGCCGGTCAAAAGAACTGC 59.331 50.000 1.90 0.00 0.00 4.40
457 554 0.179018 AGCCGGTCAAAAGAACTGCT 60.179 50.000 1.90 0.00 0.00 4.24
458 555 0.238553 GCCGGTCAAAAGAACTGCTC 59.761 55.000 1.90 0.00 0.00 4.26
459 556 1.884235 CCGGTCAAAAGAACTGCTCT 58.116 50.000 0.00 0.00 35.13 4.09
460 557 2.222027 CCGGTCAAAAGAACTGCTCTT 58.778 47.619 0.00 0.00 46.92 2.85
461 558 2.031682 CCGGTCAAAAGAACTGCTCTTG 60.032 50.000 0.00 0.00 44.00 3.02
462 559 2.872245 CGGTCAAAAGAACTGCTCTTGA 59.128 45.455 0.00 0.00 44.00 3.02
463 560 3.499918 CGGTCAAAAGAACTGCTCTTGAT 59.500 43.478 0.00 0.00 44.00 2.57
476 573 1.524621 CTTGATGCCGCGATTCCCT 60.525 57.895 8.23 0.00 0.00 4.20
487 584 1.804372 GCGATTCCCTGCTGTACTCTG 60.804 57.143 0.00 0.00 0.00 3.35
491 588 0.904865 TCCCTGCTGTACTCTGTGGG 60.905 60.000 0.00 0.00 33.58 4.61
492 589 1.194781 CCCTGCTGTACTCTGTGGGT 61.195 60.000 0.00 0.00 0.00 4.51
501 598 4.323417 TGTACTCTGTGGGTATTTGCAAG 58.677 43.478 0.00 0.00 0.00 4.01
510 607 4.219725 GTGGGTATTTGCAAGTTGTACCAT 59.780 41.667 22.63 6.45 37.20 3.55
564 661 2.943345 GCACGTCGCTCTTGTGTGG 61.943 63.158 0.00 0.00 37.77 4.17
585 682 3.636300 GGCAACAATATGGCATGGAAGTA 59.364 43.478 10.98 0.00 44.66 2.24
591 688 9.283768 CAACAATATGGCATGGAAGTAGTAATA 57.716 33.333 10.98 0.00 0.00 0.98
600 697 7.414540 GGCATGGAAGTAGTAATAATGCTATGC 60.415 40.741 15.93 15.93 39.08 3.14
622 719 4.021719 GCCTATGATGATCAATTGTTGGGG 60.022 45.833 5.13 0.00 0.00 4.96
627 724 4.403113 TGATGATCAATTGTTGGGGACATG 59.597 41.667 5.13 0.00 42.32 3.21
629 726 1.265236 TCAATTGTTGGGGACATGGC 58.735 50.000 5.13 0.00 42.32 4.40
637 734 2.440599 GGGACATGGCTGGTTGGT 59.559 61.111 0.00 0.00 0.00 3.67
651 748 1.597854 TTGGTGCCAGCTCGTTGAG 60.598 57.895 0.00 0.00 0.00 3.02
674 774 8.865090 TGAGCTATTATTTTTCCCTTTTCAACA 58.135 29.630 0.00 0.00 0.00 3.33
688 788 5.350091 CCTTTTCAACATGTCCGTTGTTTTT 59.650 36.000 0.00 0.00 45.28 1.94
704 804 6.364706 CGTTGTTTTTATCAAAGCATAAGCCA 59.635 34.615 0.00 0.00 43.56 4.75
708 808 6.907206 TTTTATCAAAGCATAAGCCATTGC 57.093 33.333 2.23 0.00 43.56 3.56
752 889 2.294233 GCTGAAATGGCAGAGTTCAACA 59.706 45.455 10.92 0.00 38.16 3.33
775 912 1.736126 GGTGTCATCTGTCATGTGCAG 59.264 52.381 11.84 11.84 35.43 4.41
776 913 1.129998 GTGTCATCTGTCATGTGCAGC 59.870 52.381 12.82 0.00 34.21 5.25
777 914 0.372679 GTCATCTGTCATGTGCAGCG 59.627 55.000 12.82 8.25 34.21 5.18
778 915 0.247185 TCATCTGTCATGTGCAGCGA 59.753 50.000 12.82 9.85 34.21 4.93
779 916 0.372679 CATCTGTCATGTGCAGCGAC 59.627 55.000 12.82 0.00 34.21 5.19
780 917 0.742281 ATCTGTCATGTGCAGCGACC 60.742 55.000 12.82 0.00 34.21 4.79
781 918 2.733671 CTGTCATGTGCAGCGACCG 61.734 63.158 7.43 0.00 0.00 4.79
782 919 2.738521 GTCATGTGCAGCGACCGT 60.739 61.111 0.00 0.00 0.00 4.83
783 920 2.432456 TCATGTGCAGCGACCGTC 60.432 61.111 0.00 0.00 0.00 4.79
784 921 2.738139 CATGTGCAGCGACCGTCA 60.738 61.111 0.00 0.00 0.00 4.35
785 922 2.433145 ATGTGCAGCGACCGTCAG 60.433 61.111 0.00 0.00 0.00 3.51
786 923 2.931068 ATGTGCAGCGACCGTCAGA 61.931 57.895 0.00 0.00 0.00 3.27
787 924 3.106407 GTGCAGCGACCGTCAGAC 61.106 66.667 0.00 0.00 0.00 3.51
788 925 3.295273 TGCAGCGACCGTCAGACT 61.295 61.111 0.00 0.00 0.00 3.24
789 926 1.969589 TGCAGCGACCGTCAGACTA 60.970 57.895 0.00 0.00 0.00 2.59
790 927 1.226435 GCAGCGACCGTCAGACTAG 60.226 63.158 0.00 0.00 0.00 2.57
791 928 1.429825 CAGCGACCGTCAGACTAGG 59.570 63.158 0.00 0.00 0.00 3.02
792 929 2.102553 GCGACCGTCAGACTAGGC 59.897 66.667 0.00 0.00 0.00 3.93
793 930 2.403987 CGACCGTCAGACTAGGCG 59.596 66.667 1.66 1.66 0.00 5.52
794 931 2.102553 GACCGTCAGACTAGGCGC 59.897 66.667 0.00 0.00 0.00 6.53
795 932 2.361357 ACCGTCAGACTAGGCGCT 60.361 61.111 7.64 0.00 0.00 5.92
796 933 2.103143 CCGTCAGACTAGGCGCTG 59.897 66.667 7.64 0.00 0.00 5.18
797 934 2.407428 CCGTCAGACTAGGCGCTGA 61.407 63.158 7.64 0.00 38.72 4.26
798 935 1.506718 CGTCAGACTAGGCGCTGAA 59.493 57.895 7.64 0.00 42.27 3.02
799 936 0.109272 CGTCAGACTAGGCGCTGAAA 60.109 55.000 7.64 0.00 42.27 2.69
800 937 1.668919 CGTCAGACTAGGCGCTGAAAA 60.669 52.381 7.64 0.00 42.27 2.29
801 938 1.727335 GTCAGACTAGGCGCTGAAAAC 59.273 52.381 7.64 0.00 42.27 2.43
802 939 1.618837 TCAGACTAGGCGCTGAAAACT 59.381 47.619 7.64 0.00 38.14 2.66
803 940 1.728971 CAGACTAGGCGCTGAAAACTG 59.271 52.381 7.64 6.98 34.06 3.16
804 941 1.618837 AGACTAGGCGCTGAAAACTGA 59.381 47.619 7.64 0.00 0.00 3.41
805 942 2.037251 AGACTAGGCGCTGAAAACTGAA 59.963 45.455 7.64 0.00 0.00 3.02
806 943 2.143925 ACTAGGCGCTGAAAACTGAAC 58.856 47.619 7.64 0.00 0.00 3.18
807 944 2.224305 ACTAGGCGCTGAAAACTGAACT 60.224 45.455 7.64 0.00 0.00 3.01
822 959 0.517316 GAACTGCGATTTGCTTCGGT 59.483 50.000 0.00 0.00 46.63 4.69
830 967 3.425625 GCGATTTGCTTCGGTGAATAACA 60.426 43.478 6.45 0.00 41.73 2.41
854 991 4.287067 AGAGAGGGAAAGTTGTCATTGCTA 59.713 41.667 0.00 0.00 0.00 3.49
857 994 5.649831 AGAGGGAAAGTTGTCATTGCTAATC 59.350 40.000 0.00 0.00 0.00 1.75
910 1059 3.002791 CCTTCGCTAAGTTGCTTCATCA 58.997 45.455 0.00 0.00 0.00 3.07
915 1064 3.242543 CGCTAAGTTGCTTCATCATGACC 60.243 47.826 0.00 0.00 0.00 4.02
941 1090 0.466189 CCGGACAGCAATTAGGCCAT 60.466 55.000 5.01 0.00 0.00 4.40
943 1092 1.750778 CGGACAGCAATTAGGCCATTT 59.249 47.619 5.01 0.00 0.00 2.32
944 1093 2.223572 CGGACAGCAATTAGGCCATTTC 60.224 50.000 5.01 0.00 0.00 2.17
945 1094 2.101415 GGACAGCAATTAGGCCATTTCC 59.899 50.000 5.01 0.00 0.00 3.13
947 1096 3.444029 ACAGCAATTAGGCCATTTCCTT 58.556 40.909 5.01 0.00 37.66 3.36
948 1097 3.448660 ACAGCAATTAGGCCATTTCCTTC 59.551 43.478 5.01 0.00 37.66 3.46
949 1098 3.033909 AGCAATTAGGCCATTTCCTTCC 58.966 45.455 5.01 0.00 37.66 3.46
950 1099 2.103094 GCAATTAGGCCATTTCCTTCCC 59.897 50.000 5.01 0.00 37.66 3.97
951 1100 3.373830 CAATTAGGCCATTTCCTTCCCA 58.626 45.455 5.01 0.00 37.66 4.37
952 1101 3.774216 CAATTAGGCCATTTCCTTCCCAA 59.226 43.478 5.01 0.00 37.66 4.12
972 1127 0.253347 ATCCCCTCTCCCTTCAGCAA 60.253 55.000 0.00 0.00 0.00 3.91
973 1128 0.911525 TCCCCTCTCCCTTCAGCAAG 60.912 60.000 0.00 0.00 0.00 4.01
1027 1182 0.250640 CAAGCTGACCAAGGAGCAGT 60.251 55.000 12.64 0.00 37.70 4.40
1480 1641 1.602851 GCTTCGCTGATCTGATGCATT 59.397 47.619 0.00 0.00 35.87 3.56
1510 1671 2.735772 CGATCTGGGGACTGGTGGG 61.736 68.421 0.00 0.00 0.00 4.61
1558 1722 4.628333 CCATGTTTCTTGATTTGGTGATGC 59.372 41.667 0.00 0.00 0.00 3.91
1590 1754 7.547227 ACTGGTTTTGCTGTAATATTGGATTC 58.453 34.615 0.00 0.00 0.00 2.52
1607 1773 1.755405 TTCGATGCGAATGCTCTGCG 61.755 55.000 0.00 0.00 41.05 5.18
1618 1784 2.087009 GCTCTGCGTACGCGAAGTT 61.087 57.895 32.65 0.00 44.03 2.66
1619 1785 1.981668 CTCTGCGTACGCGAAGTTC 59.018 57.895 32.65 7.78 44.03 3.01
1620 1786 0.454620 CTCTGCGTACGCGAAGTTCT 60.455 55.000 32.65 0.00 44.03 3.01
1621 1787 0.039798 TCTGCGTACGCGAAGTTCTT 60.040 50.000 32.65 0.00 44.03 2.52
1651 1817 7.752239 GCTGCAATATGTATACTGCCTTTATTG 59.248 37.037 11.13 11.04 33.78 1.90
1717 1893 4.345288 CACATGTATCAAAGACATTGCCG 58.655 43.478 0.00 0.00 38.98 5.69
1754 1930 2.364002 GCTGCTTCCTTGGTTTGGTTAA 59.636 45.455 0.00 0.00 0.00 2.01
1765 1941 5.793030 TGGTTTGGTTAATGAAATCGGTT 57.207 34.783 0.00 0.00 0.00 4.44
1813 1989 2.029739 CCCCGCCGTTTCAATTTACTTT 60.030 45.455 0.00 0.00 0.00 2.66
1814 1990 2.983803 CCCGCCGTTTCAATTTACTTTG 59.016 45.455 0.00 0.00 0.00 2.77
1815 1991 3.304794 CCCGCCGTTTCAATTTACTTTGA 60.305 43.478 0.00 0.00 33.89 2.69
1816 1992 4.291783 CCGCCGTTTCAATTTACTTTGAA 58.708 39.130 0.00 0.00 42.33 2.69
1826 2002 9.814899 TTTCAATTTACTTTGAAAATCAGCAGA 57.185 25.926 9.27 0.00 46.90 4.26
1827 2003 9.467258 TTCAATTTACTTTGAAAATCAGCAGAG 57.533 29.630 0.00 0.00 41.39 3.35
1828 2004 8.632679 TCAATTTACTTTGAAAATCAGCAGAGT 58.367 29.630 0.00 0.00 32.82 3.24
1829 2005 9.897744 CAATTTACTTTGAAAATCAGCAGAGTA 57.102 29.630 0.00 0.00 0.00 2.59
1830 2006 9.899226 AATTTACTTTGAAAATCAGCAGAGTAC 57.101 29.630 0.00 0.00 0.00 2.73
1831 2007 8.677148 TTTACTTTGAAAATCAGCAGAGTACT 57.323 30.769 0.00 0.00 0.00 2.73
1832 2008 8.677148 TTACTTTGAAAATCAGCAGAGTACTT 57.323 30.769 0.00 0.00 0.00 2.24
1839 2016 3.170791 TCAGCAGAGTACTTAGCATGC 57.829 47.619 10.51 10.51 0.00 4.06
1948 2699 7.148573 CGACATCTATAATACCAAATCAGCACC 60.149 40.741 0.00 0.00 0.00 5.01
1956 2707 7.516198 AATACCAAATCAGCACCATTAGATC 57.484 36.000 0.00 0.00 0.00 2.75
1958 2709 3.251729 CCAAATCAGCACCATTAGATCCG 59.748 47.826 0.00 0.00 0.00 4.18
1971 2722 7.226523 CACCATTAGATCCGTCATTGAATACAA 59.773 37.037 0.00 0.00 40.42 2.41
1976 2727 6.948353 AGATCCGTCATTGAATACAATTTCG 58.052 36.000 0.00 0.00 43.17 3.46
2016 2787 7.386299 GGAGAAAGAGGTAATACTACATGCATG 59.614 40.741 25.09 25.09 0.00 4.06
2017 2788 6.708054 AGAAAGAGGTAATACTACATGCATGC 59.292 38.462 26.53 11.82 0.00 4.06
2018 2789 5.551305 AGAGGTAATACTACATGCATGCA 57.449 39.130 26.53 25.04 0.00 3.96
2019 2790 6.119240 AGAGGTAATACTACATGCATGCAT 57.881 37.500 27.46 27.46 37.08 3.96
2043 2814 2.403561 TGATGGGTGAATGGACGGATA 58.596 47.619 0.00 0.00 0.00 2.59
2044 2815 2.774809 TGATGGGTGAATGGACGGATAA 59.225 45.455 0.00 0.00 0.00 1.75
2046 2817 3.722908 TGGGTGAATGGACGGATAAAA 57.277 42.857 0.00 0.00 0.00 1.52
2051 2822 5.008316 GGGTGAATGGACGGATAAAACATAC 59.992 44.000 0.00 0.00 0.00 2.39
2053 2824 6.094325 GGTGAATGGACGGATAAAACATACAA 59.906 38.462 0.00 0.00 0.00 2.41
2203 2978 2.125147 CGGCTTCTTCATCGGCCA 60.125 61.111 2.24 0.00 44.27 5.36
2205 2980 1.221840 GGCTTCTTCATCGGCCAGA 59.778 57.895 2.24 0.78 43.59 3.86
2215 2990 2.671370 ATCGGCCAGAGAATGCGCAT 62.671 55.000 19.28 19.28 0.00 4.73
2236 3012 4.882842 TGGTATGTGTTGAGCTAGTTGA 57.117 40.909 0.00 0.00 0.00 3.18
2242 3018 1.559682 TGTTGAGCTAGTTGATCCCCC 59.440 52.381 0.00 0.00 0.00 5.40
2279 3055 0.614697 GAAGGGATGGTGGGGTTTGG 60.615 60.000 0.00 0.00 0.00 3.28
2280 3056 1.376249 AAGGGATGGTGGGGTTTGGT 61.376 55.000 0.00 0.00 0.00 3.67
2316 3092 6.951971 AGGTAGTAGTTGCATCAAGAAATCT 58.048 36.000 0.00 0.00 0.00 2.40
2410 3186 1.173913 GAGTTCCCCGTCAAATTGGG 58.826 55.000 0.00 0.00 45.58 4.12
2415 3191 1.609210 CCCGTCAAATTGGGCCCTT 60.609 57.895 25.70 6.95 38.90 3.95
2435 3211 2.195567 GCCCTTTGTCAGCTGCACA 61.196 57.895 9.47 11.66 0.00 4.57
2440 3216 1.799403 CTTTGTCAGCTGCACAGAGAG 59.201 52.381 21.65 15.26 29.34 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 78 2.798499 CGCTACAAGATAACCCGACCAG 60.798 54.545 0.00 0.00 0.00 4.00
116 131 8.265055 CCATGATAAGACTAGAAACCAGGTAAA 58.735 37.037 0.00 0.00 0.00 2.01
130 148 5.373854 AGCCCCTAAATTCCATGATAAGACT 59.626 40.000 0.00 0.00 0.00 3.24
181 234 2.599659 GAGCAAGCATACAAGCAAACC 58.400 47.619 0.00 0.00 36.85 3.27
188 241 3.258872 AGCATTTTGGAGCAAGCATACAA 59.741 39.130 0.00 0.00 0.00 2.41
192 245 1.066430 CCAGCATTTTGGAGCAAGCAT 60.066 47.619 0.00 0.00 40.87 3.79
226 291 2.354906 GCATGCCAAATGGAATCCACAA 60.355 45.455 3.09 0.00 35.80 3.33
228 293 1.483415 AGCATGCCAAATGGAATCCAC 59.517 47.619 15.66 0.00 35.80 4.02
253 318 4.783055 TCAGAGATCACTACCAGTCTACC 58.217 47.826 0.00 0.00 0.00 3.18
254 319 5.883673 AGTTCAGAGATCACTACCAGTCTAC 59.116 44.000 0.00 0.00 0.00 2.59
256 321 4.704540 CAGTTCAGAGATCACTACCAGTCT 59.295 45.833 0.00 0.00 0.00 3.24
258 323 3.194542 GCAGTTCAGAGATCACTACCAGT 59.805 47.826 0.00 0.00 0.00 4.00
259 324 3.733380 CGCAGTTCAGAGATCACTACCAG 60.733 52.174 0.00 0.00 0.00 4.00
296 382 2.815503 TCGTCGTCCAACATCTACAAGA 59.184 45.455 0.00 0.00 0.00 3.02
301 387 3.253921 TCTGTTTCGTCGTCCAACATCTA 59.746 43.478 7.52 0.00 30.18 1.98
304 393 2.519377 TCTGTTTCGTCGTCCAACAT 57.481 45.000 7.52 0.00 30.18 2.71
368 465 3.017442 GACTTATGGGAAAGCTGGGAAC 58.983 50.000 0.00 0.00 0.00 3.62
370 467 1.209504 CGACTTATGGGAAAGCTGGGA 59.790 52.381 0.00 0.00 0.00 4.37
372 469 1.017387 GCGACTTATGGGAAAGCTGG 58.983 55.000 0.00 0.00 0.00 4.85
373 470 1.017387 GGCGACTTATGGGAAAGCTG 58.983 55.000 0.00 0.00 0.00 4.24
375 472 1.300481 GAGGCGACTTATGGGAAAGC 58.700 55.000 0.00 0.00 44.43 3.51
376 473 1.475213 GGGAGGCGACTTATGGGAAAG 60.475 57.143 0.00 0.00 44.43 2.62
377 474 0.544697 GGGAGGCGACTTATGGGAAA 59.455 55.000 0.00 0.00 44.43 3.13
379 476 0.759436 GAGGGAGGCGACTTATGGGA 60.759 60.000 0.00 0.00 44.43 4.37
380 477 1.048724 TGAGGGAGGCGACTTATGGG 61.049 60.000 0.00 0.00 44.43 4.00
381 478 1.051812 ATGAGGGAGGCGACTTATGG 58.948 55.000 0.00 0.00 44.43 2.74
382 479 2.103094 TGAATGAGGGAGGCGACTTATG 59.897 50.000 0.00 0.00 44.43 1.90
383 480 2.103263 GTGAATGAGGGAGGCGACTTAT 59.897 50.000 0.00 0.00 44.43 1.73
384 481 1.480954 GTGAATGAGGGAGGCGACTTA 59.519 52.381 0.00 0.00 44.43 2.24
385 482 0.250513 GTGAATGAGGGAGGCGACTT 59.749 55.000 0.00 0.00 44.43 3.01
389 486 1.900351 TCAGTGAATGAGGGAGGCG 59.100 57.895 0.00 0.00 32.77 5.52
397 494 0.978907 TCAGCAGCCTCAGTGAATGA 59.021 50.000 0.00 0.00 36.21 2.57
398 495 1.370609 CTCAGCAGCCTCAGTGAATG 58.629 55.000 0.00 0.00 0.00 2.67
399 496 0.252479 CCTCAGCAGCCTCAGTGAAT 59.748 55.000 0.00 0.00 0.00 2.57
400 497 0.833409 TCCTCAGCAGCCTCAGTGAA 60.833 55.000 0.00 0.00 0.00 3.18
401 498 1.228988 TCCTCAGCAGCCTCAGTGA 60.229 57.895 0.00 0.00 0.00 3.41
402 499 1.218585 CTCCTCAGCAGCCTCAGTG 59.781 63.158 0.00 0.00 0.00 3.66
403 500 0.971959 CTCTCCTCAGCAGCCTCAGT 60.972 60.000 0.00 0.00 0.00 3.41
406 503 0.969917 TGTCTCTCCTCAGCAGCCTC 60.970 60.000 0.00 0.00 0.00 4.70
407 504 0.971959 CTGTCTCTCCTCAGCAGCCT 60.972 60.000 0.00 0.00 0.00 4.58
408 505 1.516892 CTGTCTCTCCTCAGCAGCC 59.483 63.158 0.00 0.00 0.00 4.85
432 529 5.344884 CAGTTCTTTTGACCGGCTTAAAAA 58.655 37.500 0.00 2.62 0.00 1.94
433 530 4.735283 GCAGTTCTTTTGACCGGCTTAAAA 60.735 41.667 0.00 6.14 0.00 1.52
434 531 3.243267 GCAGTTCTTTTGACCGGCTTAAA 60.243 43.478 0.00 0.00 0.00 1.52
435 532 2.292292 GCAGTTCTTTTGACCGGCTTAA 59.708 45.455 0.00 0.00 0.00 1.85
436 533 1.877443 GCAGTTCTTTTGACCGGCTTA 59.123 47.619 0.00 0.00 0.00 3.09
437 534 0.668535 GCAGTTCTTTTGACCGGCTT 59.331 50.000 0.00 0.00 0.00 4.35
438 535 0.179018 AGCAGTTCTTTTGACCGGCT 60.179 50.000 0.00 0.00 0.00 5.52
439 536 0.238553 GAGCAGTTCTTTTGACCGGC 59.761 55.000 0.00 0.00 0.00 6.13
440 537 1.884235 AGAGCAGTTCTTTTGACCGG 58.116 50.000 0.00 0.00 29.61 5.28
441 538 2.872245 TCAAGAGCAGTTCTTTTGACCG 59.128 45.455 0.00 0.00 43.68 4.79
442 539 4.791974 CATCAAGAGCAGTTCTTTTGACC 58.208 43.478 0.00 0.00 45.16 4.02
443 540 4.225208 GCATCAAGAGCAGTTCTTTTGAC 58.775 43.478 9.66 0.93 45.16 3.18
444 541 3.254166 GGCATCAAGAGCAGTTCTTTTGA 59.746 43.478 9.66 0.00 46.01 2.69
445 542 3.572584 GGCATCAAGAGCAGTTCTTTTG 58.427 45.455 0.00 0.24 43.68 2.44
446 543 2.227388 CGGCATCAAGAGCAGTTCTTTT 59.773 45.455 0.00 0.00 43.68 2.27
447 544 1.808945 CGGCATCAAGAGCAGTTCTTT 59.191 47.619 0.00 0.00 43.68 2.52
449 546 1.023513 GCGGCATCAAGAGCAGTTCT 61.024 55.000 0.00 0.00 37.93 3.01
450 547 1.427020 GCGGCATCAAGAGCAGTTC 59.573 57.895 0.00 0.00 0.00 3.01
451 548 2.393768 CGCGGCATCAAGAGCAGTT 61.394 57.895 0.00 0.00 0.00 3.16
452 549 2.584261 ATCGCGGCATCAAGAGCAGT 62.584 55.000 6.13 0.00 0.00 4.40
453 550 1.434622 AATCGCGGCATCAAGAGCAG 61.435 55.000 6.13 0.00 0.00 4.24
454 551 1.431488 GAATCGCGGCATCAAGAGCA 61.431 55.000 6.13 0.00 0.00 4.26
455 552 1.278038 GAATCGCGGCATCAAGAGC 59.722 57.895 6.13 0.00 0.00 4.09
456 553 1.502163 GGGAATCGCGGCATCAAGAG 61.502 60.000 6.13 0.00 0.00 2.85
457 554 1.523711 GGGAATCGCGGCATCAAGA 60.524 57.895 6.13 0.00 0.00 3.02
458 555 1.524621 AGGGAATCGCGGCATCAAG 60.525 57.895 6.13 0.00 0.00 3.02
459 556 1.819208 CAGGGAATCGCGGCATCAA 60.819 57.895 6.13 0.00 0.00 2.57
460 557 2.203056 CAGGGAATCGCGGCATCA 60.203 61.111 6.13 0.00 0.00 3.07
461 558 3.654020 GCAGGGAATCGCGGCATC 61.654 66.667 16.41 1.82 37.44 3.91
462 559 4.181010 AGCAGGGAATCGCGGCAT 62.181 61.111 22.07 6.84 39.56 4.40
476 573 3.868369 GCAAATACCCACAGAGTACAGCA 60.868 47.826 0.00 0.00 0.00 4.41
487 584 3.570550 TGGTACAACTTGCAAATACCCAC 59.429 43.478 18.86 7.10 35.42 4.61
501 598 9.256477 TCGTTCAATCATAAGATATGGTACAAC 57.744 33.333 0.00 0.00 35.71 3.32
564 661 3.806625 ACTTCCATGCCATATTGTTGC 57.193 42.857 0.00 0.00 0.00 4.17
585 682 9.775854 GATCATCATAGGCATAGCATTATTACT 57.224 33.333 0.00 0.00 0.00 2.24
591 688 7.396339 ACAATTGATCATCATAGGCATAGCATT 59.604 33.333 13.59 0.00 0.00 3.56
600 697 5.242393 GTCCCCAACAATTGATCATCATAGG 59.758 44.000 13.59 0.00 0.00 2.57
622 719 2.964978 GCACCAACCAGCCATGTC 59.035 61.111 0.00 0.00 0.00 3.06
651 748 9.435688 ACATGTTGAAAAGGGAAAAATAATAGC 57.564 29.630 0.00 0.00 0.00 2.97
674 774 5.837437 TGCTTTGATAAAAACAACGGACAT 58.163 33.333 0.00 0.00 0.00 3.06
731 831 2.294233 TGTTGAACTCTGCCATTTCAGC 59.706 45.455 0.00 0.00 34.19 4.26
732 832 4.778534 ATGTTGAACTCTGCCATTTCAG 57.221 40.909 0.00 0.00 31.11 3.02
734 834 4.240096 CCAATGTTGAACTCTGCCATTTC 58.760 43.478 0.00 0.00 0.00 2.17
737 874 2.559668 CACCAATGTTGAACTCTGCCAT 59.440 45.455 0.00 0.00 0.00 4.40
752 889 2.751259 GCACATGACAGATGACACCAAT 59.249 45.455 0.00 0.00 0.00 3.16
775 912 2.102553 GCCTAGTCTGACGGTCGC 59.897 66.667 3.34 0.00 0.00 5.19
776 913 2.403987 CGCCTAGTCTGACGGTCG 59.596 66.667 3.34 3.73 0.00 4.79
777 914 2.102553 GCGCCTAGTCTGACGGTC 59.897 66.667 0.00 0.00 0.00 4.79
778 915 2.361357 AGCGCCTAGTCTGACGGT 60.361 61.111 2.29 0.00 0.00 4.83
779 916 1.934220 TTCAGCGCCTAGTCTGACGG 61.934 60.000 2.29 0.00 38.87 4.79
780 917 0.109272 TTTCAGCGCCTAGTCTGACG 60.109 55.000 2.29 0.00 38.87 4.35
781 918 1.727335 GTTTTCAGCGCCTAGTCTGAC 59.273 52.381 2.29 0.00 38.87 3.51
782 919 1.618837 AGTTTTCAGCGCCTAGTCTGA 59.381 47.619 2.29 0.00 37.54 3.27
783 920 1.728971 CAGTTTTCAGCGCCTAGTCTG 59.271 52.381 2.29 2.60 0.00 3.51
784 921 1.618837 TCAGTTTTCAGCGCCTAGTCT 59.381 47.619 2.29 0.00 0.00 3.24
785 922 2.080286 TCAGTTTTCAGCGCCTAGTC 57.920 50.000 2.29 0.00 0.00 2.59
786 923 2.143925 GTTCAGTTTTCAGCGCCTAGT 58.856 47.619 2.29 0.00 0.00 2.57
787 924 2.158449 CAGTTCAGTTTTCAGCGCCTAG 59.842 50.000 2.29 0.00 0.00 3.02
788 925 2.143122 CAGTTCAGTTTTCAGCGCCTA 58.857 47.619 2.29 0.00 0.00 3.93
789 926 0.947244 CAGTTCAGTTTTCAGCGCCT 59.053 50.000 2.29 0.00 0.00 5.52
790 927 0.661483 GCAGTTCAGTTTTCAGCGCC 60.661 55.000 2.29 0.00 0.00 6.53
791 928 0.993746 CGCAGTTCAGTTTTCAGCGC 60.994 55.000 0.00 0.00 37.20 5.92
792 929 0.581529 TCGCAGTTCAGTTTTCAGCG 59.418 50.000 0.00 0.00 44.45 5.18
793 930 2.977405 ATCGCAGTTCAGTTTTCAGC 57.023 45.000 0.00 0.00 0.00 4.26
794 931 3.423206 GCAAATCGCAGTTCAGTTTTCAG 59.577 43.478 0.00 0.00 41.79 3.02
795 932 3.066621 AGCAAATCGCAGTTCAGTTTTCA 59.933 39.130 0.00 0.00 46.13 2.69
796 933 3.632189 AGCAAATCGCAGTTCAGTTTTC 58.368 40.909 0.00 0.00 46.13 2.29
797 934 3.715628 AGCAAATCGCAGTTCAGTTTT 57.284 38.095 0.00 0.00 46.13 2.43
798 935 3.632189 GAAGCAAATCGCAGTTCAGTTT 58.368 40.909 0.00 0.00 46.13 2.66
799 936 2.349817 CGAAGCAAATCGCAGTTCAGTT 60.350 45.455 0.00 0.00 46.13 3.16
800 937 1.195448 CGAAGCAAATCGCAGTTCAGT 59.805 47.619 0.00 0.00 46.13 3.41
801 938 1.464687 CCGAAGCAAATCGCAGTTCAG 60.465 52.381 1.55 0.00 46.13 3.02
802 939 0.516877 CCGAAGCAAATCGCAGTTCA 59.483 50.000 1.55 0.00 46.13 3.18
803 940 0.517316 ACCGAAGCAAATCGCAGTTC 59.483 50.000 1.55 0.00 46.13 3.01
804 941 0.238289 CACCGAAGCAAATCGCAGTT 59.762 50.000 1.55 0.00 46.13 3.16
805 942 0.602638 TCACCGAAGCAAATCGCAGT 60.603 50.000 1.55 0.00 46.13 4.40
806 943 0.516877 TTCACCGAAGCAAATCGCAG 59.483 50.000 1.55 0.00 46.13 5.18
807 944 1.164411 ATTCACCGAAGCAAATCGCA 58.836 45.000 1.55 0.00 46.13 5.10
822 959 6.601332 ACAACTTTCCCTCTCTTGTTATTCA 58.399 36.000 0.00 0.00 0.00 2.57
830 967 3.823304 GCAATGACAACTTTCCCTCTCTT 59.177 43.478 0.00 0.00 0.00 2.85
910 1059 2.351276 GTCCGGGCTGTTGGTCAT 59.649 61.111 0.00 0.00 0.00 3.06
915 1064 1.526575 AATTGCTGTCCGGGCTGTTG 61.527 55.000 14.85 0.00 0.00 3.33
941 1090 2.311841 GAGAGGGGATTTGGGAAGGAAA 59.688 50.000 0.00 0.00 0.00 3.13
943 1092 1.596496 GAGAGGGGATTTGGGAAGGA 58.404 55.000 0.00 0.00 0.00 3.36
944 1093 0.553333 GGAGAGGGGATTTGGGAAGG 59.447 60.000 0.00 0.00 0.00 3.46
945 1094 0.553333 GGGAGAGGGGATTTGGGAAG 59.447 60.000 0.00 0.00 0.00 3.46
947 1096 0.123266 AAGGGAGAGGGGATTTGGGA 59.877 55.000 0.00 0.00 0.00 4.37
948 1097 0.553333 GAAGGGAGAGGGGATTTGGG 59.447 60.000 0.00 0.00 0.00 4.12
949 1098 1.213926 CTGAAGGGAGAGGGGATTTGG 59.786 57.143 0.00 0.00 0.00 3.28
950 1099 1.409381 GCTGAAGGGAGAGGGGATTTG 60.409 57.143 0.00 0.00 0.00 2.32
951 1100 0.922626 GCTGAAGGGAGAGGGGATTT 59.077 55.000 0.00 0.00 0.00 2.17
952 1101 0.253347 TGCTGAAGGGAGAGGGGATT 60.253 55.000 0.00 0.00 0.00 3.01
972 1127 1.635487 AGAGACCAGAGAGAGCTGACT 59.365 52.381 0.00 0.00 38.14 3.41
973 1128 1.745087 CAGAGACCAGAGAGAGCTGAC 59.255 57.143 0.00 0.00 38.14 3.51
1018 1173 1.604023 ACTCGTCCGACTGCTCCTT 60.604 57.895 0.00 0.00 0.00 3.36
1027 1182 2.636412 CCTCCTTGCACTCGTCCGA 61.636 63.158 0.00 0.00 0.00 4.55
1510 1671 0.534203 TTTCCTCACCGGACAACAGC 60.534 55.000 9.46 0.00 42.97 4.40
1558 1722 2.851195 ACAGCAAAACCAGTAGGAGTG 58.149 47.619 0.00 0.00 38.69 3.51
1590 1754 1.208642 TACGCAGAGCATTCGCATCG 61.209 55.000 0.00 0.00 42.27 3.84
1607 1773 0.714439 GCCAGAAGAACTTCGCGTAC 59.286 55.000 5.77 0.00 43.97 3.67
1618 1784 6.226052 CAGTATACATATTGCAGCCAGAAGA 58.774 40.000 5.50 0.00 0.00 2.87
1619 1785 5.106791 GCAGTATACATATTGCAGCCAGAAG 60.107 44.000 5.50 0.00 43.10 2.85
1620 1786 4.756642 GCAGTATACATATTGCAGCCAGAA 59.243 41.667 5.50 0.00 43.10 3.02
1621 1787 4.318332 GCAGTATACATATTGCAGCCAGA 58.682 43.478 5.50 0.00 43.10 3.86
1754 1930 6.594937 CCATTTTCAAATCCAACCGATTTCAT 59.405 34.615 0.00 0.00 46.22 2.57
1789 1965 1.842052 AAATTGAAACGGCGGGGTAT 58.158 45.000 13.24 0.00 0.00 2.73
1790 1966 2.083002 GTAAATTGAAACGGCGGGGTA 58.917 47.619 13.24 0.00 0.00 3.69
1813 1989 5.793817 TGCTAAGTACTCTGCTGATTTTCA 58.206 37.500 17.23 0.00 0.00 2.69
1814 1990 6.713520 CATGCTAAGTACTCTGCTGATTTTC 58.286 40.000 17.23 0.00 0.00 2.29
1815 1991 5.065731 GCATGCTAAGTACTCTGCTGATTTT 59.934 40.000 11.37 0.00 0.00 1.82
1816 1992 4.574013 GCATGCTAAGTACTCTGCTGATTT 59.426 41.667 11.37 0.00 0.00 2.17
1817 1993 4.125703 GCATGCTAAGTACTCTGCTGATT 58.874 43.478 11.37 0.00 0.00 2.57
1818 1994 3.387374 AGCATGCTAAGTACTCTGCTGAT 59.613 43.478 21.21 10.82 38.45 2.90
1819 1995 2.762887 AGCATGCTAAGTACTCTGCTGA 59.237 45.455 21.21 0.00 38.45 4.26
1820 1996 3.176552 AGCATGCTAAGTACTCTGCTG 57.823 47.619 21.21 13.99 38.45 4.41
1821 1997 3.902881 AAGCATGCTAAGTACTCTGCT 57.097 42.857 23.00 13.38 41.42 4.24
1822 1998 4.954092 AAAAGCATGCTAAGTACTCTGC 57.046 40.909 23.00 11.67 0.00 4.26
1923 2674 7.661437 TGGTGCTGATTTGGTATTATAGATGTC 59.339 37.037 0.00 0.00 0.00 3.06
1944 2695 3.466836 TCAATGACGGATCTAATGGTGC 58.533 45.455 0.00 0.00 0.00 5.01
1956 2707 4.657055 TGCGAAATTGTATTCAATGACGG 58.343 39.130 18.04 4.75 42.60 4.79
1958 2709 7.919313 ATGATGCGAAATTGTATTCAATGAC 57.081 32.000 0.00 0.00 42.60 3.06
1987 2738 8.585881 GCATGTAGTATTACCTCTTTCTCCATA 58.414 37.037 0.00 0.00 0.00 2.74
1990 2761 6.817184 TGCATGTAGTATTACCTCTTTCTCC 58.183 40.000 0.00 0.00 0.00 3.71
2016 2787 1.270094 CCATTCACCCATCATGCATGC 60.270 52.381 22.25 11.82 0.00 4.06
2017 2788 2.035449 GTCCATTCACCCATCATGCATG 59.965 50.000 21.07 21.07 0.00 4.06
2018 2789 2.313317 GTCCATTCACCCATCATGCAT 58.687 47.619 0.00 0.00 0.00 3.96
2019 2790 1.766494 GTCCATTCACCCATCATGCA 58.234 50.000 0.00 0.00 0.00 3.96
2020 2791 0.664761 CGTCCATTCACCCATCATGC 59.335 55.000 0.00 0.00 0.00 4.06
2043 2814 7.947890 TCCTCCCTCTTGTTAATTGTATGTTTT 59.052 33.333 0.00 0.00 0.00 2.43
2044 2815 7.466804 TCCTCCCTCTTGTTAATTGTATGTTT 58.533 34.615 0.00 0.00 0.00 2.83
2046 2817 6.636454 TCCTCCCTCTTGTTAATTGTATGT 57.364 37.500 0.00 0.00 0.00 2.29
2051 2822 7.569240 AGATACTTCCTCCCTCTTGTTAATTG 58.431 38.462 0.00 0.00 0.00 2.32
2053 2824 7.147461 GGAAGATACTTCCTCCCTCTTGTTAAT 60.147 40.741 19.41 0.00 35.73 1.40
2081 2852 4.918810 AAAAATGAAGTGAAGTTCGCCT 57.081 36.364 12.78 0.00 0.00 5.52
2115 2890 1.648116 AGGCCTGCCAAATGATGTTT 58.352 45.000 3.11 0.00 38.92 2.83
2119 2894 1.669999 GCGAAGGCCTGCCAAATGAT 61.670 55.000 5.69 0.00 38.92 2.45
2153 2928 7.448777 CACCACTTCTAGTCTAGCCTCAATATA 59.551 40.741 1.60 0.00 0.00 0.86
2203 2978 2.216046 CACATACCATGCGCATTCTCT 58.784 47.619 22.81 5.62 0.00 3.10
2205 2980 2.042686 ACACATACCATGCGCATTCT 57.957 45.000 22.81 11.09 0.00 2.40
2215 2990 4.882842 TCAACTAGCTCAACACATACCA 57.117 40.909 0.00 0.00 0.00 3.25
2242 3018 0.114168 TCTGGAACAAATGGGGTGGG 59.886 55.000 0.00 0.00 38.70 4.61
2243 3019 1.895131 CTTCTGGAACAAATGGGGTGG 59.105 52.381 0.00 0.00 38.70 4.61
2244 3020 1.895131 CCTTCTGGAACAAATGGGGTG 59.105 52.381 0.00 0.00 38.70 4.61
2245 3021 1.203174 CCCTTCTGGAACAAATGGGGT 60.203 52.381 0.00 0.00 38.70 4.95
2246 3022 1.077005 TCCCTTCTGGAACAAATGGGG 59.923 52.381 0.00 0.00 41.40 4.96
2279 3055 0.677842 ACTACCTTCGGTGTCCACAC 59.322 55.000 0.85 0.85 45.72 3.82
2280 3056 2.165167 CTACTACCTTCGGTGTCCACA 58.835 52.381 0.00 0.00 36.19 4.17
2289 3065 4.744570 TCTTGATGCAACTACTACCTTCG 58.255 43.478 0.00 0.00 0.00 3.79
2293 3069 7.044798 AGAGATTTCTTGATGCAACTACTACC 58.955 38.462 0.00 0.00 0.00 3.18
2298 3074 6.705302 AGTGAGAGATTTCTTGATGCAACTA 58.295 36.000 0.00 0.00 32.53 2.24
2410 3186 1.315981 GCTGACAAAGGGCTAAGGGC 61.316 60.000 0.00 0.00 40.90 5.19
2415 3191 0.606401 GTGCAGCTGACAAAGGGCTA 60.606 55.000 20.43 0.00 34.71 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.