>input_sequence_79836
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----------------------------------ATGGCGGCCAAGCTGACCAAGGAGCAGTCGGACGAGTGCAAGGAGG
TGTTCGACCTGTTCGACGGCGACGAGGACGGCCGCATCGCCGCCGGCGAGCTGGTCACGGCGCTCCGCTCGCTGGGCCAG
AACGTGGACGAGGACGAGGCGCGGGGCTTCCTCGAGGACGCGGGCGCGGGCGGCGCCGGCGCCG------TCGACCTCCC
CACGTTCCTGGCCGTCGCGGCGCGCAAGGCTAACGCCGGCGTGTCGGCCAAGGGCCTGGCCCAGTGCCTGGACGCGTTCG
ACGACGACGGGAGCGGGGTCATCCCCGCGGAGCAGCTGCGGCAGGTGATGCTCACCCACGGCGACCGGCTCACGGAGGAG
GAGGCCGACGAGCTGGTCCGCAAGGCCGACCCCCGCGGCGAGGGCCGCGTCCAGTGCAAGGAGCTCGTCAAGGTGCTCAT
GAACAACAAGTGA-------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G319300
AATGCCAGACAGACTCGCAAGGTTGTATTTTGTGCTATG-------TTTTTTAAG--TACTGTTGCCTGTTGGGTAGCTG
GTCGGGTTATCT----TGTAGCGGTGTAGTCGT-GGGGAGCAGCATCGGATTTAC---CTGGTTTCTA------------
----------------------GTCTTATCATGGAATTTAGGGGCTTTGTGCAAATCTCGGT-TTTGCCCTGCGGTTTGC
TTGTATGCTT------------GCTCCAAAATGCTGGCCGGAAGTACATTTTGTGGATTCCATTTGGCATGCTTGGTGGT
AGAC------------------TGGTA---GTGATCTCTGAACTGCGCTGGTGCAAATTCGTCTTGT---AGATGTTGGA
CGACGAAACAGAACT-------ACAGCGAATCCAACAGCTGCATT-GTCGGAATCTAAGGCCTGGTTCCCAGCTTTCCCA
TAAGTCGCCTCCCTCATTCACTGAGGCTGCTGAGGAGAGACAGCTTATTTTTTAAGCCGGTCAAAAGAACTGCTCTTGAT
GCCGCGATTCCCTGCTGTACTCTGTGGGTATTTGCAAGTTGTACCATATCTTATGATTGAACGAAACCAAATGTGGTGGA
TGGCACGTCGCTCTTGTGTGGCAACAATATGGCATGGAAGTAGTAATAATGCTATGCCTATGATGATCAATTGTTGGGGA
CATGGCTGGTTGGTGCCAGCTCGTTGAGCTATTA---TTTTTCCCTTTTCAACATGTCCGTTGTTTTTATCAAAGCATAA
GCCATTGCTATTTTTATCATAAATAAAACTGCTG-------------------------------------AAATGGCAG
AGTTCAACATTGGTGTCATCTGTCATGTGCAGCGACCGTCAGACTAGGCGCTGAAAACTGAACTGCGATTTGCTTCGGTG
AATAACAAGAGAGGGAAAGTTGTCATTGCTAATC-----------TTTTTGACCTGTCAAAAGAAAAGAAAAGCGACCTT
CGCTA-AGTTGCTTCATCATGACCAACAGCCCGGACAGCAATTAGGCCATTTCCTTCCCAAA------TCCCCTCTCCCT
TCAGCAAGTCAGCTCTCTCTGGTCTCTGCCCGCCATGGCGGCCAAGCTGACCAAGGAGCAGTCGGACGAGTGCAAGGAGG
TGTTCGACCTGTTCGACGGCGACGAGGACGGCCGCATCGCCGCCGGCGAGCTGGTCACGGCGCTCCGCTCGCTGGGCCAG
AACGTGGACGAGGACGAGGCGCGGGGCTTCCTCGAGGACGCGGGCGCGGGCGGCGCCGGCGCCG------TCGACCTCCC
CACGTTCCTGGCCGTCGCGGCGCGCAAGGCTAACGCCGGCGTGTCGGCCAAGGGCCTGGCCCAGTGCCTGGACGCGTTCG
ACGACGACGGGAGCGGGGTCATCCCCGCGGAGCAGCTGCGGCAGGTGATGCTCACCCACGGCGACCGGCTCACGGAGGAG
GAGGCCGACGAGCTGGTCCGCAAGGCCGACCCCCGCGGCGAGGGCCGCGTCCAGTGCAAGGAGCTCGTCAAGGTGCTCAT
GAACAACAAGTGATCCACGAGCTTCGCTGATCTGATGCATTGATCGATCGGCCGATCTGGGGACTGGTGGGCTGTTG---
TCCGGTGAGGAAATGGTGCCATGTTTCTTGATTTGGTGATGCACTCCTACTGGTTTTGCTGTAATATTGGATTC--GATG
CGAATGCTCTGCGTACGCGAAGTTCTTCTGGCTGCAATATGTATACTGCCTTTATTGCGTTGTG---------TGTATGC
ATACACAAATTGCTTTAACGACGATTTTGCACATGTATC-AAAGACATTGCCGGCGCAAATCCAGTGCGCTGCTTCCTTG
GTTTGGTTAATGAAATCGGTTGGATTTGAAAATGGATATTTTTCATACCCCGCCGTTTCAATTTACTTTGAAAATCAGCA
GAGTACTTAGCATG-CTTTTTTACGGATTTACTTTGCATATTAGTATTGT--CT--------------------------
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-----------------------------------------------------------------TAAGTTAAACTTCAT
AAATTTTAAAACAAATTATAG-AAAAAATTATCGACATCTATAATACCAAATCAGCACCATTAGATCCGTCATTGAATAC
AATTTCGCATCATATTAT--------------------ATGGAGAAAGAGGTAATACTACATGCATGCATGCATGATGGG
TGAATGGACGGATAAAACATACAATTAACAAGAGGGAGGAAGTATCTTCCAAGGCGAACTTCACTTCATT----TTTTGT
GGAAATTACAAACATCATTTGGCAGGCCTTCGCTGGAGGGGGTACCTTATATTGAGGCTAGACTAGAAGTGGTGAATCGC
CGGCTTCTTCATCGGCCAGAGAATGCGCATGGTATGTGTT-GAGCTAGTTGATCCCCCCCACCCCATTTGTTCCAGAAGG
GATGGTGGGGTTTGGTGTGGACACCGAAGGTAGTAGTTGCATCAAGAAATCTCTCACTCTTCCGATGTGTGGACGGCGCT
GACGATCCGGGTTGACACACATGAGCCCGATCTCCAACACACTTTTGAGTTCCCCGTCAAATTGGGCCCTTAGCCCTTTG
TCAGCTGCACAGAGAGTTGTATTGTTCG
>chr1A_1
AATGCCAGACAGACTCGCGTGGTTGTATTTTGTGCTATG-------TTTTTTAAGGATACTGTTGCCTGTTGGGTAGTTG
GTCGGGTTATCTATCTTGTAGCGGTGTAGTCTTGGGGGAGCAGCATCGGAATTACTACCTGGTTTCTTTTGGTTGTGGCA
CTTATCTTG----------TTCGTCTTATCATGGAATTTAGGGGCGTTGTGCAAATCTCGGTTTTTGCGCTGCAGTTTGC
GTGTCTGCTTGGTTTGTGTTCAGCTCCAAAATGCTGGCCGG-AGTACATTGTATGGATTCCATTTGGCATGCTTGGACCT
TCTGG---------AACTTCGGTGGTAGCTGTGATTTCTGAACTGCGCTGGTGCAAATTGTCTT--GTACAGTTGTTGGA
CGACGGAACAGAACTCAAGTCGACAGCAAAACCAACAGCTGCATTTGTCGGAATCTAAACAGGGATCCATATGATGGGGC
CTGGTTAGCTCGAGATCCAGCTCCTGGC----------------------------------------------------
GCCGCGATTCCCCGCTGTACTCTCTGGTGTTTTGCAACTTGTACC--ATCTTATGATTGAACGAAACCAAATGTGGTGGA
TGGCACGTCGCTCTTGTGTGCCAACAATATGGCATGGAAGTGGTAATCATGCTATG-CTATGATGATCAATTGTTGGGTA
CATAGTTGGTTGGCGCCAGCTCGTTGAACTATTC---CTTTTCCCTTTTCAACCTGTCCGTTGTTTTCATCAAAGCATAA
GCCGTTGATATTTTTATCATAATACATCTTTTTCCGTTTTGAAAAAAACATCTTCACCATAAAAATGCCAAAATTGGCAG
AGTTCAAC-TTGGTGTCATCTGTCATGTGCA---------------------------------GCGATTTGCTTCGGAG
AATAACGAGAGAGGGAAAGTTGTCATTGCTTACGATCTCTCTTGATTTTTGACCTGTCAAAAGGAAAGAAAAGCGACCTT
CGCTAAAGTTGCTTCATCGTGACGAGCAGCCCGGACAGCAATTAGGGCAATCAATCAGTCCATTTCTTT-CCCTCTCCCT
CCAGCAGCTCGGCTCTCTCTGGTCTCTGCCCGCCATGGCGGCCAAGCTGACCCAGGAGCAGGCGGACGAGTGCAAGGAGG
TGTTCGACCTGTTCGACGGCGACGAGGACGGCCGCATCGCCGCCGGCGAGCTGGTCACGGCGCTCCGCTCGCTGGGCCAG
AACGTGGACGAGGCCGAGGCGCGGGGCTTCCTCGAGGACGCCGGCGCGGGCGGCGCCGGCGCCGTCGCCATCGACCTCCC
CACGTTCCTGGCCGTGGCCGCGCGCAAGGCCAACGCCGGCGTATCGGCCAAGGGACTGGCCCAGTGCCTCGACGCGTTCG
ACGACGACGGGAGCGGCGTCATCCCCGCGGAGCAGCTGCGGCAGGTGATGCTCACCCACGGCGACCGGCTCACGGAGGAG
GAGGCCGACGAGCTGGTCCGCAAGGCCGACCCCCGCGGCGAGGGCCGCGTCCAGTGCAAGGAGCTCGTCAAGGTGCTCAT
GAACAACAAGTGATCGGCGAGCTTCTCTGATCTGATGCGTCGATCGATCGGCCGATCTGGGGACCGGTGAAGTGTTGTCC
TCCGGTGAGGAAATGGTGCCATGTTTCTTGATTTGGTGATGTACTCCTACTGGTTTTGCTGTAATATTGGATTG--GATG
CGAATGCTCTGCATACGCGAAGTC---CTGGCTGCAATATGTATGCTGCGTTTGTTTCGTTGTATGTATGTATTGTATGC
ATACACAAATTGCTTTAACGACGATTTTGCACATGTATC-AAAGACATTGCCAGCGCAAATCCGGTGCGCTGCTTCCTTG
GTTTGGTTAGTGAAATCGGTAGGATTTGAAAATGGATATTTTTCGCACCCGGCCGTTTCAATTTACTT------------
--------AGCATGTTTTTTTTACGGATTTACTTTGCATATTAGTATTGTGTCT--------------------------
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-----------------------------------------------------------------TAAGTTGAACTACAT
AAATTTTAAAACAAAGTATAG-AAAAAATCATCAACATCTATAATACCAAATCAACACTATTGGATTCATCATTGAATAC
ATTTTCACATCATATATATGTTTGTTACTGTACCACACATAAAGAAAGAGGTAATACTACATGCATA----CATGATGGG
TGAATGGACGGATGCATCATATAGTTAACAAGAGTGGGGAAGTATCTTCCATGGTGAACCTCACTTCATTCATTTTCTTT
GAAAATTACGAACTTCATTTGGCAGGCCTTCGTTGGAGGGGGTACCTCATATCGAGGCTAGACTAGAAGTGGTGAATCAC
CGGCTTCTTCATCAGCCGGTGAATGTGCAGGGTACGTGTTGGAGCTAGTTGGTCCCCT----CCCATTTGCTCTGGAAGG
GATGGTGGGGTTTGAAGTGGACACTGAAAGTAGCAGTTGCATCAAGAAATCACTCACTCTTCCGATGTGTGGACGGCGC-
--------------ACACACATGAGCCCGATCTCCAACACACTTTTGAGTCCCCCGTCAAATTGGCCCCTCAGCCCTTTG
TCAGCTGCATCGAGAATTGTATTGTTCG
>chr1D_1
AATGCCAGACAGACTCGCAAAGTTGTATTTTGTGCTATGCGCCTGTTTTTTTAAG--TACTGTTGCCTGTTGGGTAGTTG
GTCGGGTTATCT----TGTAGCGGTGTAGTCGT-GGGGAGCAGCATCGGAAT---TACCTGGTTTCTTTTGGTTGTGGCA
CTTATCTTGCCTGTTAGGCTTCGTCTTATCATGGAATTTAGGGGCTTTGTGCAAATCTTGG-TTTCGCCCTGCATTTTAA
ATGTCTGCTTGGTTTGTGTTA---------------GCCGGAAGTACATTGTATGGATTTCATTTGGCATGCTTGGTTTC
TGCGAACTTTGTACAACTTCGGTGGTA---GTGATCTCTGAACTGCGCTGGAGCAAATTCGCCTTGGTACAGTTGTTGGA
CGACGAAACACAACTCAAGTCGACAGCGAATCCAACAGCTGCATT-GT--------------------------------
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-----------------------------ATTTGCAACTTGTACCACATCTTATGATTGATCGAAACCAAATGTGGTGGA
TGGCACGTC-----------------------------------------GCTATG-CTATGATGATCAATTGTTGGGCA
CA----TGGTTGGCGCCAGCTCGTTGAACTATTATTCTTTTTCCCTTTTCAACCTGTCAGTTGTTTACATCAAAGCATAA
GCCGTTGATTTTTTTATCATAATATAAAT--------------------ATCTTTACCATAAAGATGCTAAAATCGGCAG
AGTTCAA-----------------------A---------------------------------GCGATTTGCTTCGGAG
AATAACGAGAGAGGGAAAGTTGTCATTGCTTATGATCTCTCTTAATTTTTGACCTGTCAAAAGAAAAGAAAAGCGACCTT
CGCTAG-GTTGCTTCATCGTGACGAACAGCCCGGACAGCAATTAGGCCAATCAATCAGTCCATTTCTTTCCCCTATCCCT
TCAGCAGTTCAGCTCTCTCTGGTCTCTCCCCGCCATGGCGGCCAAGCTGACCCAGGCGCAGGCGGACGAGTGCAAGGAGG
TGTTCGACCTGTTCGACGGCGACGAGGACGGCCGCATCGCCGCCGGCGAGCTGGTCACGGCGCTGCGCTCGCTGGGCCAG
AACGTGGACGAGGCCGAGGCGCGGGGCTTCCTCGAGGACGCGGGCGCGGGCGGCGCCGGCGCCG------TCGACCTCCC
CACGTTCCTGGCCGTGGCGGCGCGCAAGGCCAACGCCGGCGTGTCGGCCAAGGGCCTGGCCCAGTGCCTGGACGCGTTCG
ACGACGACGGGAGCGGGGTCATCCCCGCGGAGCAGCTGCGGCAGGTGATGCTCACCCACGGCGACCGGCTCACGGAGGAG
GAGGCCGACGAGCTGCTCCGCAAGGCCGACCCCCGCGGCGAGGGCCGCGTCCAGTGCAAGGAGCTCGTCAAGGTGCTCAT
GAACAACAAGTGATCCACGAGCTTCGCTGATC-----CATCGATCGATCCGCCGATCTGGGGACTGGTGGACTGTTGTCG
---GGTGAGGACATGGTGCCATGTTTCTTGATTTCCTGATGTACTCCTGCTGG-TTTGCTGTAATATTGGATGAGAGATG
CGAATGCTCTG-------------------GCTGCAATATGTATACTGCCTTTATTTCGTTGTGTGTATG---------C
ATACACAAATTGCTTTAACGACGATTTTGCACATGTATCAAAAGACATTGCCAGCGCAAATCCAGTGCGCTGCTTCCTTG
GTTTGGTTAGTGAAATCGGTAGGATTTGAAAATGGATATTTTTCGCACCCCGCCGTTTCAACTTACTT------------
--------AGGATG-TTTTTTTACGGATTTACTTTGTGTATTACTCGAATGCACGGATACTTCAGTCGACCAGCGAATCC
GTATCCGATACTGATACTCCTCCGATACGCCCCCGATACGTGTCCCTGGAGTATCTGAGAATAAATGATTTAAAACAATT
ACGATACTCGAAGGATACTTTGTTAATACGTCTTGGATACTTTTCCAGCCCAGGTAAGAGCCCACTCAGCCCATTTAAGA
GGCAACCAACTACCCTGGTGCCGTGATGCCCTCTATCCTTTCCCTCACAACGTCTTTCCCCCTTCCCGTGCTCACACCAG
GCGGCGCCTGTGTCGCCAGCGGCTGCTCACCCAGGTCCCTGGGACAGCGGCGGCGGCTAGCCGTCAACAAGCTCCTCCTC
CTCCTCATCAACGTCCCCTCTCACGCAGCAGCCATGTATTTACACTTCTCTTCTCCATTTCTCCTGCCCAGCCAGGCTCA
TCTCCTCTTCTTTCTTCTCTGATCTCTGAGGATTTCTTATTTTCATCTTCTCCAGGTTGCTTTGGGTAGCTACAACGTAT
CCGTATTGGCCCGATACTGATACCCGTATCCGTATCGGTGCATTCAAGGTGTATTACTATCGTTGTAAGTTAGACTACAT
AAATTTTAAAACAAACTATAGAAAAAAATTATCAACATCTATAATACCAAATCAACACTATTAGATTCATCATTCAATAC
ATTTTCACATTATATATATGTTTATTACTGTATCACACATAGAGAAAGAGGTAATACAG---GCATA----CATGATGGG
TGAATGGATGGATGCAGCATATAGTTAACAAGAGGGAAGAAGTATCTTCCATGGCGAACTTCAC----TTCATTTTTTGT
GGAAATTATGAACTTCATTTGGCAGTCCTTCGCTGGAGGGGGTACCTCATATTGAGGCTAGACTAGCAGTGGTGAATCGT
CGGCTTCTTCATCGGCCGGTGAATGCGCAGGGTATGTGTTGGAGCTACTTGGTCCCCT----CCCATTTACTCCAGAAGG
GATGGTGGGGTTTGAAGTGGACACTAAAAATAGCAGTTGCATCAAGAAACCCCTCACTCTTTTGATGTGTGGACGACGCT
GACGATCCGGGTTGACACACATGAGCCCGATCTCCAACACACTTTTGAGTTCCCCGTCAAATTGGCCTCTCAACCCTTTG
TCATCTGCACCGAGAATTGTATTGTTCG
>SNPs
-----------------------------------------------------------------------------S--
--------------------------------------------------S----------------S------------
-------------------------------------------------------------------------S------
S---S---------------------------------------------S-S------------------------SS-
S-SS---------------------------------------------------------S----S-----S-------
----------------------------------------------------------SSSSS-S-S-SS-SSS-SSSSS
SSS--SSS---SSSSSSSSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------------S----------S---SS--------S--------S---------------------------------
--------------------S--------------------S-----S--------S---------------------S-
---S-S-------S-------------S-------------------------S-------------S------------
---S---S--------------SSS---S-SS-S---------------------------------------S------
--------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-
------S-----------------------S--S----------------------------------------------
------------------S----S-------------------------S-SSS-SSSSSS-------------------
------SS--------------------------------------------S--------S------------------
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-------------S------------------------------------------------------------------
---------------S--------------S-------------------------------------------------
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----------------------------------------S-----------------------------S---------
-----------------------------------------S-------------------------------S------
------------S----------SSSS-----------------------------S-----------------------
----------------------------------------------------S---------------------------
---------S----------S-----------------------SS----------------------SSSSSSSSSSSS
SSSSSSSS-------S----------------------------------------------------------------
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----------------------------------------------------------------------------S---
---------------S-----------------S--------------------S---S-------S-S-----------
-S----S--------SSS----------------------S-------------------------SSSSS---------
-------------SS-S----S-S---------------------------S----------------------------
---------S---S---------------------------------S--------------------------------
-----------------S-S---------S---------------------S-----SSSSS--------S---------
--------------SS--------S---S----S-----------------S----------------------------
-----------------------------------------------------------------S----S---------
----------S----S------------
>forward_291
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-------------------------------TGCTGGCCGGAAGTACATTT-----------------------------
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>reverse_1671
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----------------------------------------------------------------------GCTGTTGTCC
GGTGAGGAAA----------------------------------------------------------------------
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