Multiple sequence alignment - TraesCS1B01G316200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G316200 chr1B 100.000 3950 0 0 1 3950 540723328 540719379 0.000000e+00 7295
1 TraesCS1B01G316200 chr1D 95.193 3516 116 24 454 3950 402826927 402823446 0.000000e+00 5507
2 TraesCS1B01G316200 chr1D 95.510 490 16 3 1 490 402827410 402826927 0.000000e+00 778
3 TraesCS1B01G316200 chr1A 96.971 1915 48 8 1 1912 498051641 498049734 0.000000e+00 3206
4 TraesCS1B01G316200 chr1A 94.144 2015 93 16 1952 3950 498049725 498047720 0.000000e+00 3044
5 TraesCS1B01G316200 chr5D 83.465 127 16 5 581 705 505091794 505091671 3.230000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G316200 chr1B 540719379 540723328 3949 True 7295.0 7295 100.0000 1 3950 1 chr1B.!!$R1 3949
1 TraesCS1B01G316200 chr1D 402823446 402827410 3964 True 3142.5 5507 95.3515 1 3950 2 chr1D.!!$R1 3949
2 TraesCS1B01G316200 chr1A 498047720 498051641 3921 True 3125.0 3206 95.5575 1 3950 2 chr1A.!!$R1 3949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 824 1.098050 CCTCACAGGGCATTGCTTAC 58.902 55.0 8.82 0.00 0.0 2.34 F
1140 1183 0.388907 CCGATGCAAAACCAAGGCTG 60.389 55.0 0.00 0.00 0.0 4.85 F
1194 1237 0.461135 ATGCGGTCAATCAATTGGGC 59.539 50.0 5.42 5.46 38.3 5.36 F
2591 2635 0.605589 AGAAAGCACTCTCCTGACCG 59.394 55.0 0.00 0.00 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 2522 0.317269 CGGCTGCAGTCAAACAGTTG 60.317 55.000 20.11 0.0 36.26 3.16 R
2749 2793 0.689623 CTTCCTGAGGCTGAACTGGT 59.310 55.000 0.00 0.0 0.00 4.00 R
2757 2801 2.107204 TCTTTCTTTGCTTCCTGAGGCT 59.893 45.455 0.00 0.0 34.20 4.58 R
3654 3720 0.680280 CTCTTGCCTTGCCTGATGCT 60.680 55.000 0.00 0.0 42.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 217 5.500234 AGAAGGCAACAAGTATCAGCAATA 58.500 37.500 0.00 0.00 41.41 1.90
324 325 6.017109 ACATGAACCAGCAACACTAAACTAAG 60.017 38.462 0.00 0.00 0.00 2.18
325 326 5.433526 TGAACCAGCAACACTAAACTAAGT 58.566 37.500 0.00 0.00 0.00 2.24
326 327 6.584488 TGAACCAGCAACACTAAACTAAGTA 58.416 36.000 0.00 0.00 0.00 2.24
327 328 6.480981 TGAACCAGCAACACTAAACTAAGTAC 59.519 38.462 0.00 0.00 0.00 2.73
328 329 6.170846 ACCAGCAACACTAAACTAAGTACT 57.829 37.500 0.00 0.00 0.00 2.73
395 399 4.675146 CGGCAAAATGAGTGATTCGGAAAT 60.675 41.667 0.00 0.00 0.00 2.17
485 491 9.914834 AATTGCTCCAGTTGTAGGTATTTATTA 57.085 29.630 0.00 0.00 0.00 0.98
587 629 4.141688 GGACTAGTTTCATTACTGAGGGGG 60.142 50.000 0.00 0.00 31.68 5.40
781 824 1.098050 CCTCACAGGGCATTGCTTAC 58.902 55.000 8.82 0.00 0.00 2.34
847 890 2.496070 CGGAGAACAGGACTGGTATTCA 59.504 50.000 4.14 0.00 34.19 2.57
938 981 5.417580 TGCAGAACAAGTAAGAAGTTGGTTT 59.582 36.000 0.00 0.00 36.05 3.27
947 990 8.624776 CAAGTAAGAAGTTGGTTTGATCTTTCT 58.375 33.333 0.00 0.00 33.15 2.52
973 1016 5.048713 CCCTCCACATTTCTGTTGTTCTAAC 60.049 44.000 0.00 0.00 31.62 2.34
1140 1183 0.388907 CCGATGCAAAACCAAGGCTG 60.389 55.000 0.00 0.00 0.00 4.85
1194 1237 0.461135 ATGCGGTCAATCAATTGGGC 59.539 50.000 5.42 5.46 38.30 5.36
1222 1265 9.810231 GAGCAGAAAGTTAGTATACGTCTATAC 57.190 37.037 0.00 0.00 36.44 1.47
1272 1315 5.127194 AGTCCGCTGAATTCTTACACTCATA 59.873 40.000 7.05 0.00 0.00 2.15
1273 1316 5.986135 GTCCGCTGAATTCTTACACTCATAT 59.014 40.000 7.05 0.00 0.00 1.78
1360 1403 4.922206 TGTATCATCTGAAAAGCCACCTT 58.078 39.130 0.00 0.00 0.00 3.50
1484 1527 3.139077 CCTCCAAGCTCAAGTTAACGTT 58.861 45.455 5.88 5.88 0.00 3.99
1529 1572 7.919151 AGCCCAAGTTTAACTTCTATAGTTCT 58.081 34.615 7.45 0.00 43.67 3.01
1604 1647 2.691526 CAGCCATAGGATGTGCAATTGT 59.308 45.455 7.40 0.00 34.00 2.71
1698 1742 2.633967 AGGAAACTGGCATGCAATTCAA 59.366 40.909 21.36 0.00 41.13 2.69
1838 1882 4.008330 TCGAGGTGAGGTACTGAAACTAG 58.992 47.826 0.00 0.00 41.55 2.57
1860 1904 6.963049 AGTTGTGTAATAAGCTCTTAACCG 57.037 37.500 0.00 0.00 0.00 4.44
1912 1956 6.925610 TGGAAATCAAGATAACCTGAATCG 57.074 37.500 0.00 0.00 0.00 3.34
1938 1982 2.202623 GCTACCACTCTCGTGCCG 60.203 66.667 0.00 0.00 39.86 5.69
1945 1989 1.006102 ACTCTCGTGCCGACCAAAG 60.006 57.895 0.00 0.00 0.00 2.77
2030 2074 4.086457 GGATGGCCCCATAAAACGAATAT 58.914 43.478 0.00 0.00 36.70 1.28
2032 2076 5.712917 GGATGGCCCCATAAAACGAATATAA 59.287 40.000 0.00 0.00 36.70 0.98
2058 2102 8.918202 TCTAGCAATTAAAGAACCAAAAGAGA 57.082 30.769 0.00 0.00 0.00 3.10
2083 2127 0.675633 AGCAATTTGGCACCACTCAC 59.324 50.000 0.00 0.00 35.83 3.51
2091 2135 2.422597 TGGCACCACTCACTAAATTCG 58.577 47.619 0.00 0.00 0.00 3.34
2173 2217 1.399440 CACCATGCATGCAGTGACTAC 59.601 52.381 27.41 0.00 31.79 2.73
2189 2233 7.684428 GCAGTGACTACAACATATCCATCAGTA 60.684 40.741 0.00 0.00 0.00 2.74
2318 2362 5.143369 AGAGAGCCTTGGAAAACAGAATTT 58.857 37.500 0.00 0.00 0.00 1.82
2382 2426 8.082852 TCAGAACTAGTCTCACAAGTATCAAAC 58.917 37.037 0.00 0.00 32.70 2.93
2392 2436 7.225734 TCTCACAAGTATCAAACGAATGTTTCA 59.774 33.333 0.00 0.00 44.94 2.69
2396 2440 6.312399 AGTATCAAACGAATGTTTCAGCAA 57.688 33.333 0.00 0.00 44.94 3.91
2478 2522 5.043248 CAGTTCATGGAAAGTTCAACCAAC 58.957 41.667 0.00 0.00 37.24 3.77
2591 2635 0.605589 AGAAAGCACTCTCCTGACCG 59.394 55.000 0.00 0.00 0.00 4.79
2598 2642 1.469308 CACTCTCCTGACCGTGAGTAC 59.531 57.143 0.00 0.00 37.64 2.73
2749 2793 3.214190 AATGGCAGAGGCAGCACCA 62.214 57.895 0.00 0.00 42.43 4.17
2757 2801 2.203337 GGCAGCACCACCAGTTCA 60.203 61.111 0.00 0.00 38.86 3.18
2784 2828 2.746362 AGGAAGCAAAGAAAGAGATGCG 59.254 45.455 0.00 0.00 43.39 4.73
2824 2868 4.210331 AGAACCAAACTGCAAGAGACAAT 58.790 39.130 0.00 0.00 37.43 2.71
2825 2869 4.646492 AGAACCAAACTGCAAGAGACAATT 59.354 37.500 0.00 0.00 37.43 2.32
2907 2951 5.181811 TCAAAACACTGATGATGGTGATCAC 59.818 40.000 17.91 17.91 41.52 3.06
3052 3096 3.592059 TGGTGATTAAACTGCGTAGGTC 58.408 45.455 5.26 0.00 0.00 3.85
3211 3256 6.069381 AGGGAATAGGGATGCAATATAGGAAC 60.069 42.308 0.00 0.00 0.00 3.62
3379 3425 5.255443 AGAACCTTACCCTCCCAAATAACAT 59.745 40.000 0.00 0.00 0.00 2.71
3380 3426 4.867086 ACCTTACCCTCCCAAATAACATG 58.133 43.478 0.00 0.00 0.00 3.21
3452 3512 7.895767 CACAGCTTAAAAGTTAAAACAAAACCG 59.104 33.333 0.00 0.00 0.00 4.44
3494 3554 4.260620 GCACACTTCACGAACACAACTAAT 60.261 41.667 0.00 0.00 0.00 1.73
3508 3568 6.269315 ACACAACTAATATCTCAGAGAAGCG 58.731 40.000 3.63 0.00 0.00 4.68
3550 3610 1.645034 AATTCGTCCGCAGTCATCTG 58.355 50.000 0.00 0.00 43.87 2.90
3559 3619 1.445871 GCAGTCATCTGTGCACATCA 58.554 50.000 22.00 10.71 43.05 3.07
3577 3637 6.639686 GCACATCATTCAACCAGCATATAAAG 59.360 38.462 0.00 0.00 0.00 1.85
3588 3648 8.501580 CAACCAGCATATAAAGTGATGTATCTG 58.498 37.037 0.00 0.00 31.38 2.90
3592 3652 8.430828 CAGCATATAAAGTGATGTATCTGTTCG 58.569 37.037 0.00 0.00 0.00 3.95
3604 3664 2.613026 TCTGTTCGTCCACACAACAT 57.387 45.000 0.00 0.00 29.82 2.71
3611 3671 3.054166 TCGTCCACACAACATAAACGAG 58.946 45.455 0.00 0.00 33.28 4.18
3618 3678 6.030849 CCACACAACATAAACGAGTTTTGAA 58.969 36.000 6.53 0.00 34.23 2.69
3652 3718 5.364778 TCGCAGCACTTATTTGTATACCAT 58.635 37.500 0.00 0.00 0.00 3.55
3653 3719 5.465390 TCGCAGCACTTATTTGTATACCATC 59.535 40.000 0.00 0.00 0.00 3.51
3654 3720 5.236263 CGCAGCACTTATTTGTATACCATCA 59.764 40.000 0.00 0.00 0.00 3.07
3655 3721 6.564686 CGCAGCACTTATTTGTATACCATCAG 60.565 42.308 0.00 0.00 0.00 2.90
3656 3722 6.662616 CAGCACTTATTTGTATACCATCAGC 58.337 40.000 0.00 0.00 0.00 4.26
3657 3723 6.260714 CAGCACTTATTTGTATACCATCAGCA 59.739 38.462 0.00 0.00 0.00 4.41
3774 3843 7.776933 TCACAAGTGATATAAGAAGACATGC 57.223 36.000 0.00 0.00 34.14 4.06
3823 3892 5.483685 TCTCAACTATACTTGCCACAAGT 57.516 39.130 16.42 16.42 0.00 3.16
3848 3917 7.861176 GCAAGAGCACTGTATTATAGAGTAC 57.139 40.000 1.63 0.00 41.58 2.73
3849 3918 7.653647 GCAAGAGCACTGTATTATAGAGTACT 58.346 38.462 2.40 2.40 41.58 2.73
3850 3919 8.784994 GCAAGAGCACTGTATTATAGAGTACTA 58.215 37.037 1.63 0.00 41.58 1.82
3896 3965 8.534954 ACTGTAGTTTATTATGGAGAGCAGTA 57.465 34.615 0.00 0.00 31.64 2.74
3909 3978 1.667830 GCAGTAAGCGCTGGTGTCA 60.668 57.895 12.58 0.00 37.00 3.58
3910 3979 1.021390 GCAGTAAGCGCTGGTGTCAT 61.021 55.000 12.58 0.00 37.00 3.06
3911 3980 1.002366 CAGTAAGCGCTGGTGTCATC 58.998 55.000 12.58 0.00 33.11 2.92
3914 3983 0.391130 TAAGCGCTGGTGTCATCCAC 60.391 55.000 12.58 0.00 43.74 4.02
3915 3984 2.046892 GCGCTGGTGTCATCCACT 60.047 61.111 0.00 0.00 43.94 4.00
3922 3999 1.339342 TGGTGTCATCCACTCATGCTG 60.339 52.381 0.00 0.00 43.94 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 3.850122 TGGAGAGTGACATCTTACGTG 57.150 47.619 0.00 0.00 0.00 4.49
173 174 4.079970 TCTTGGAGAGTGACATCTTACGT 58.920 43.478 0.00 0.00 0.00 3.57
174 175 4.703645 TCTTGGAGAGTGACATCTTACG 57.296 45.455 0.00 0.00 0.00 3.18
290 291 5.106197 TGTTGCTGGTTCATGTTATGTGATC 60.106 40.000 0.00 0.00 0.00 2.92
326 327 9.585369 ACTTCTCTGTTACCTTAGTTACTAAGT 57.415 33.333 24.92 17.16 41.09 2.24
395 399 2.289382 TGCTTGGAGCGTGAAAGATACA 60.289 45.455 0.00 0.00 46.26 2.29
587 629 5.120830 CAGCTGAGTAACATCAACCTTGTAC 59.879 44.000 8.42 0.00 0.00 2.90
657 700 5.499004 TGCTGTCCTTAGTTATTCTTGGT 57.501 39.130 0.00 0.00 0.00 3.67
776 819 2.038557 TGGTCTTCTCAGGTTGGTAAGC 59.961 50.000 0.00 0.00 0.00 3.09
781 824 2.887152 CCTTTTGGTCTTCTCAGGTTGG 59.113 50.000 0.00 0.00 34.07 3.77
835 878 5.091261 ACTGACAAGATGAATACCAGTCC 57.909 43.478 0.00 0.00 0.00 3.85
847 890 7.496346 TTGAGTATTTCCCTACTGACAAGAT 57.504 36.000 0.00 0.00 32.11 2.40
938 981 1.361204 TGTGGAGGGCAGAAAGATCA 58.639 50.000 0.00 0.00 0.00 2.92
947 990 1.133513 ACAACAGAAATGTGGAGGGCA 60.134 47.619 0.00 0.00 0.00 5.36
973 1016 5.645067 TCTGCTGTAGAATGGACAGAAATTG 59.355 40.000 6.96 0.00 46.01 2.32
1140 1183 3.048337 TGTAACTCGGGTGTCCATTTC 57.952 47.619 0.00 0.00 0.00 2.17
1194 1237 4.918037 ACGTATACTAACTTTCTGCTCCG 58.082 43.478 0.56 0.00 0.00 4.63
1222 1265 9.952188 TTCTGTACAATGAGTAGATAAGAATCG 57.048 33.333 0.00 0.00 37.19 3.34
1272 1315 4.759782 AGTAGCTTCTGCGTGATAAACAT 58.240 39.130 0.00 0.00 45.42 2.71
1273 1316 4.174009 GAGTAGCTTCTGCGTGATAAACA 58.826 43.478 0.00 0.00 45.42 2.83
1401 1444 2.371841 TGACTTGACTGCAGTTATGGGT 59.628 45.455 22.65 15.20 0.00 4.51
1484 1527 3.630312 GCTTACTGTTCTTGTTTGTCCCA 59.370 43.478 0.00 0.00 0.00 4.37
1548 1591 4.700213 GGCCTGTGTGTCATTATACAGTTT 59.300 41.667 0.00 0.00 37.89 2.66
1550 1593 3.263170 TGGCCTGTGTGTCATTATACAGT 59.737 43.478 3.32 0.00 37.89 3.55
1604 1647 2.111669 CGGGCATGCCATCAGCTA 59.888 61.111 36.56 0.00 44.23 3.32
1838 1882 6.810182 TCTCGGTTAAGAGCTTATTACACAAC 59.190 38.462 0.00 0.00 38.12 3.32
1860 1904 6.093219 ACTGTGTGCATCTAATGAATTGTCTC 59.907 38.462 0.00 0.00 0.00 3.36
2032 2076 9.520515 TCTCTTTTGGTTCTTTAATTGCTAGAT 57.479 29.630 0.00 0.00 0.00 1.98
2058 2102 3.118298 AGTGGTGCCAAATTGCTTTTTCT 60.118 39.130 0.00 0.00 0.00 2.52
2083 2127 8.608844 AGAAGGTATTAAGCATCCGAATTTAG 57.391 34.615 0.00 0.00 0.00 1.85
2091 2135 8.910351 ACATTAGAAGAAGGTATTAAGCATCC 57.090 34.615 0.00 0.00 0.00 3.51
2122 2166 4.610945 AGCTGGAATTTGACAAAAGTTCG 58.389 39.130 4.41 0.00 0.00 3.95
2173 2217 5.674525 ACCACTGTACTGATGGATATGTTG 58.325 41.667 20.26 2.11 36.94 3.33
2318 2362 1.650242 TTCCAGGTTTGCAGGACCCA 61.650 55.000 15.45 0.84 37.93 4.51
2382 2426 2.937591 ACTGCATTGCTGAAACATTCG 58.062 42.857 20.66 0.00 0.00 3.34
2392 2436 6.881065 TCTTTTATCTCTGTAACTGCATTGCT 59.119 34.615 10.49 0.00 0.00 3.91
2396 2440 8.854614 ACTTTCTTTTATCTCTGTAACTGCAT 57.145 30.769 0.00 0.00 0.00 3.96
2478 2522 0.317269 CGGCTGCAGTCAAACAGTTG 60.317 55.000 20.11 0.00 36.26 3.16
2508 2552 4.649218 TGGCTGTGTAGTCTATGCTCATTA 59.351 41.667 0.00 0.00 0.00 1.90
2591 2635 7.618137 TCTATTAAGGGAAAACTGGTACTCAC 58.382 38.462 0.00 0.00 0.00 3.51
2598 2642 5.510430 AGGCTTCTATTAAGGGAAAACTGG 58.490 41.667 0.00 0.00 0.00 4.00
2749 2793 0.689623 CTTCCTGAGGCTGAACTGGT 59.310 55.000 0.00 0.00 0.00 4.00
2757 2801 2.107204 TCTTTCTTTGCTTCCTGAGGCT 59.893 45.455 0.00 0.00 34.20 4.58
2784 2828 7.113658 TGGTTCTTCAAGATATAGTCTGTCC 57.886 40.000 0.00 0.00 37.23 4.02
2824 2868 5.659463 CTCAAAACCTGAATGTTCAACCAA 58.341 37.500 0.00 0.00 36.64 3.67
2825 2869 4.441356 GCTCAAAACCTGAATGTTCAACCA 60.441 41.667 0.00 0.00 36.64 3.67
2907 2951 7.598493 CCATTTAAATCAAAATGCCTATACCCG 59.402 37.037 0.00 0.00 42.81 5.28
3187 3232 5.975988 TCCTATATTGCATCCCTATTCCC 57.024 43.478 0.00 0.00 0.00 3.97
3332 3378 6.022107 TGGTAGTCCCTGCTATTCTTACTA 57.978 41.667 0.00 0.00 0.00 1.82
3432 3492 9.473640 ACTGTTCGGTTTTGTTTTAACTTTTAA 57.526 25.926 0.00 0.00 0.00 1.52
3433 3493 9.473640 AACTGTTCGGTTTTGTTTTAACTTTTA 57.526 25.926 0.00 0.00 0.00 1.52
3434 3494 7.949903 ACTGTTCGGTTTTGTTTTAACTTTT 57.050 28.000 0.00 0.00 0.00 2.27
3435 3495 7.652507 TGAACTGTTCGGTTTTGTTTTAACTTT 59.347 29.630 15.18 0.00 0.00 2.66
3436 3496 7.146648 TGAACTGTTCGGTTTTGTTTTAACTT 58.853 30.769 15.18 0.00 0.00 2.66
3437 3497 6.679843 TGAACTGTTCGGTTTTGTTTTAACT 58.320 32.000 15.18 0.00 0.00 2.24
3438 3498 6.931243 TGAACTGTTCGGTTTTGTTTTAAC 57.069 33.333 15.18 0.00 0.00 2.01
3474 3534 7.328493 TGAGATATTAGTTGTGTTCGTGAAGTG 59.672 37.037 0.00 0.00 0.00 3.16
3494 3554 4.514401 TCTACACACGCTTCTCTGAGATA 58.486 43.478 8.42 0.00 0.00 1.98
3550 3610 1.270274 TGCTGGTTGAATGATGTGCAC 59.730 47.619 10.75 10.75 0.00 4.57
3559 3619 7.886629 ACATCACTTTATATGCTGGTTGAAT 57.113 32.000 0.00 0.00 0.00 2.57
3577 3637 3.612860 GTGTGGACGAACAGATACATCAC 59.387 47.826 0.00 0.00 0.00 3.06
3588 3648 3.245754 TCGTTTATGTTGTGTGGACGAAC 59.754 43.478 0.00 0.00 35.45 3.95
3592 3652 4.806342 AACTCGTTTATGTTGTGTGGAC 57.194 40.909 0.00 0.00 0.00 4.02
3611 3671 5.564127 GCTGCGATGTACTTTACTTCAAAAC 59.436 40.000 0.00 0.00 33.77 2.43
3618 3678 3.594603 AGTGCTGCGATGTACTTTACT 57.405 42.857 0.00 0.00 28.71 2.24
3626 3686 5.236478 GGTATACAAATAAGTGCTGCGATGT 59.764 40.000 5.01 0.00 0.00 3.06
3652 3718 0.963856 CTTGCCTTGCCTGATGCTGA 60.964 55.000 0.00 0.00 42.00 4.26
3653 3719 0.963856 TCTTGCCTTGCCTGATGCTG 60.964 55.000 0.00 0.00 42.00 4.41
3654 3720 0.680280 CTCTTGCCTTGCCTGATGCT 60.680 55.000 0.00 0.00 42.00 3.79
3655 3721 0.964358 ACTCTTGCCTTGCCTGATGC 60.964 55.000 0.00 0.00 41.77 3.91
3656 3722 1.093159 GACTCTTGCCTTGCCTGATG 58.907 55.000 0.00 0.00 0.00 3.07
3657 3723 0.694771 TGACTCTTGCCTTGCCTGAT 59.305 50.000 0.00 0.00 0.00 2.90
3774 3843 6.245890 AGGAGAGGAACAAAGGAATAGATG 57.754 41.667 0.00 0.00 0.00 2.90
3872 3941 9.469807 CTTACTGCTCTCCATAATAAACTACAG 57.530 37.037 0.00 0.00 0.00 2.74
3873 3942 7.926555 GCTTACTGCTCTCCATAATAAACTACA 59.073 37.037 0.00 0.00 38.95 2.74
3874 3943 7.115095 CGCTTACTGCTCTCCATAATAAACTAC 59.885 40.741 0.00 0.00 40.11 2.73
3875 3944 7.145985 CGCTTACTGCTCTCCATAATAAACTA 58.854 38.462 0.00 0.00 40.11 2.24
3876 3945 5.986135 CGCTTACTGCTCTCCATAATAAACT 59.014 40.000 0.00 0.00 40.11 2.66
3896 3965 1.672356 GTGGATGACACCAGCGCTT 60.672 57.895 7.50 0.00 44.49 4.68
3909 3978 3.303938 AGTAGTAGCAGCATGAGTGGAT 58.696 45.455 0.00 0.00 39.69 3.41
3910 3979 2.739943 AGTAGTAGCAGCATGAGTGGA 58.260 47.619 0.00 0.00 39.69 4.02
3911 3980 3.634448 AGTAGTAGTAGCAGCATGAGTGG 59.366 47.826 0.00 0.00 39.69 4.00
3914 3983 5.766150 AGAAGTAGTAGTAGCAGCATGAG 57.234 43.478 0.00 0.00 39.69 2.90
3915 3984 5.652452 TCAAGAAGTAGTAGTAGCAGCATGA 59.348 40.000 0.00 0.00 39.69 3.07
3922 3999 4.557097 GCCGGATCAAGAAGTAGTAGTAGC 60.557 50.000 5.05 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.