Multiple sequence alignment - TraesCS1B01G313500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G313500 chr1B 100.000 2621 0 0 1 2621 537414405 537417025 0.000000e+00 4841
1 TraesCS1B01G313500 chr1B 89.894 188 17 2 2000 2185 569942913 569942726 9.370000e-60 241
2 TraesCS1B01G313500 chr1A 93.876 1192 48 7 488 1678 496644764 496645931 0.000000e+00 1773
3 TraesCS1B01G313500 chr1A 91.176 374 30 2 2249 2621 496647548 496647919 3.010000e-139 505
4 TraesCS1B01G313500 chr1A 93.956 182 6 3 1689 1866 496645912 496646092 1.200000e-68 270
5 TraesCS1B01G313500 chr1A 93.258 178 12 0 2000 2177 295312881 295312704 2.000000e-66 263
6 TraesCS1B01G313500 chr1D 89.774 1369 82 19 330 1678 400358011 400359341 0.000000e+00 1700
7 TraesCS1B01G313500 chr1D 96.629 178 4 2 1689 1866 400359322 400359497 7.090000e-76 294
8 TraesCS1B01G313500 chr1D 89.062 128 11 3 1875 2001 400359477 400359602 3.490000e-34 156
9 TraesCS1B01G313500 chr4A 98.480 329 5 0 1 329 59882454 59882782 4.860000e-162 580
10 TraesCS1B01G313500 chr6B 97.892 332 4 1 1 329 391064718 391064387 2.930000e-159 571
11 TraesCS1B01G313500 chr6B 97.313 335 9 0 1 335 20812812 20813146 1.050000e-158 569
12 TraesCS1B01G313500 chr2B 97.598 333 5 1 1 330 654237839 654238171 3.790000e-158 568
13 TraesCS1B01G313500 chr2B 97.264 329 9 0 1 329 78111331 78111659 2.280000e-155 558
14 TraesCS1B01G313500 chr2B 95.181 166 8 0 2000 2165 72616589 72616754 2.000000e-66 263
15 TraesCS1B01G313500 chr3B 97.576 330 8 0 1 330 32574655 32574984 1.360000e-157 566
16 TraesCS1B01G313500 chr3B 97.273 330 9 0 1 330 32517639 32517968 6.330000e-156 560
17 TraesCS1B01G313500 chr3A 97.289 332 9 0 1 332 216096521 216096190 4.900000e-157 564
18 TraesCS1B01G313500 chr5B 97.297 333 6 1 1 330 50616325 50615993 1.760000e-156 562
19 TraesCS1B01G313500 chr5B 91.257 183 16 0 1992 2174 8378124 8378306 1.560000e-62 250
20 TraesCS1B01G313500 chr6A 95.152 165 8 0 2000 2164 458217874 458217710 7.200000e-66 261
21 TraesCS1B01G313500 chr3D 93.976 166 10 0 1999 2164 98843656 98843491 4.330000e-63 252
22 TraesCS1B01G313500 chr4B 93.529 170 7 3 2000 2167 35507459 35507292 1.560000e-62 250
23 TraesCS1B01G313500 chr2A 90.576 191 14 4 1979 2167 570190664 570190476 1.560000e-62 250
24 TraesCS1B01G313500 chr2D 90.761 184 13 2 2000 2183 155439837 155440016 2.610000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G313500 chr1B 537414405 537417025 2620 False 4841.000000 4841 100.000000 1 2621 1 chr1B.!!$F1 2620
1 TraesCS1B01G313500 chr1A 496644764 496647919 3155 False 849.333333 1773 93.002667 488 2621 3 chr1A.!!$F1 2133
2 TraesCS1B01G313500 chr1D 400358011 400359602 1591 False 716.666667 1700 91.821667 330 2001 3 chr1D.!!$F1 1671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.028505 GCGATCGTAACCTAGCGTGA 59.971 55.0 17.81 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2207 0.108138 CTTGCCAACTACTCCCTCCG 60.108 60.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.579201 CCGGAACAGAGACGGCAT 59.421 61.111 0.00 0.00 41.23 4.40
21 22 1.519455 CCGGAACAGAGACGGCATC 60.519 63.158 0.00 0.00 41.23 3.91
22 23 1.874019 CGGAACAGAGACGGCATCG 60.874 63.158 0.00 0.00 43.02 3.84
23 24 1.511305 GGAACAGAGACGGCATCGA 59.489 57.895 0.00 0.00 40.11 3.59
24 25 0.526524 GGAACAGAGACGGCATCGAG 60.527 60.000 0.00 0.00 40.11 4.04
25 26 1.142778 GAACAGAGACGGCATCGAGC 61.143 60.000 0.00 0.00 44.65 5.03
28 29 4.933064 GAGACGGCATCGAGCGGG 62.933 72.222 15.12 7.01 46.82 6.13
30 31 4.933064 GACGGCATCGAGCGGGAG 62.933 72.222 15.12 4.89 46.82 4.30
34 35 2.892425 GCATCGAGCGGGAGGTTG 60.892 66.667 0.00 0.00 43.00 3.77
37 38 3.760035 TCGAGCGGGAGGTTGAGC 61.760 66.667 0.00 0.00 45.22 4.26
38 39 4.069232 CGAGCGGGAGGTTGAGCA 62.069 66.667 0.00 0.00 44.43 4.26
39 40 2.125350 GAGCGGGAGGTTGAGCAG 60.125 66.667 0.00 0.00 43.00 4.24
40 41 2.604686 AGCGGGAGGTTGAGCAGA 60.605 61.111 0.00 0.00 37.18 4.26
41 42 2.125350 GCGGGAGGTTGAGCAGAG 60.125 66.667 0.00 0.00 0.00 3.35
42 43 2.125350 CGGGAGGTTGAGCAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
43 44 2.270527 GGGAGGTTGAGCAGAGCC 59.729 66.667 0.00 0.00 0.00 4.70
44 45 2.125350 GGAGGTTGAGCAGAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
45 46 2.817396 GAGGTTGAGCAGAGCCGC 60.817 66.667 0.00 0.00 0.00 6.53
46 47 3.596066 GAGGTTGAGCAGAGCCGCA 62.596 63.158 0.00 0.00 0.00 5.69
47 48 2.669569 GGTTGAGCAGAGCCGCAA 60.670 61.111 0.00 0.00 0.00 4.85
48 49 2.684843 GGTTGAGCAGAGCCGCAAG 61.685 63.158 0.00 0.00 0.00 4.01
49 50 1.669115 GTTGAGCAGAGCCGCAAGA 60.669 57.895 0.00 0.00 43.02 3.02
50 51 1.375140 TTGAGCAGAGCCGCAAGAG 60.375 57.895 0.00 0.00 43.02 2.85
51 52 1.820010 TTGAGCAGAGCCGCAAGAGA 61.820 55.000 0.00 0.00 43.02 3.10
52 53 1.519013 GAGCAGAGCCGCAAGAGAG 60.519 63.158 0.00 0.00 43.02 3.20
53 54 2.511145 GCAGAGCCGCAAGAGAGG 60.511 66.667 0.00 0.00 43.02 3.69
60 61 4.521062 CGCAAGAGAGGCCGGGAG 62.521 72.222 2.18 0.00 43.02 4.30
84 85 4.988598 CGCAGCAGTGGAACCGGT 62.989 66.667 0.00 0.00 37.80 5.28
85 86 3.357079 GCAGCAGTGGAACCGGTG 61.357 66.667 8.52 0.00 37.80 4.94
86 87 2.669569 CAGCAGTGGAACCGGTGG 60.670 66.667 8.52 0.00 37.80 4.61
87 88 3.168528 AGCAGTGGAACCGGTGGT 61.169 61.111 8.52 0.00 37.80 4.16
88 89 2.978010 GCAGTGGAACCGGTGGTG 60.978 66.667 8.52 2.41 37.80 4.17
89 90 2.281484 CAGTGGAACCGGTGGTGG 60.281 66.667 8.52 0.00 37.80 4.61
90 91 4.265056 AGTGGAACCGGTGGTGGC 62.265 66.667 8.52 0.00 37.80 5.01
159 160 4.895478 GCGGCGGTGCGGGTATTA 62.895 66.667 9.78 0.00 0.00 0.98
160 161 2.660552 CGGCGGTGCGGGTATTAG 60.661 66.667 0.00 0.00 0.00 1.73
161 162 2.280592 GGCGGTGCGGGTATTAGG 60.281 66.667 0.00 0.00 0.00 2.69
162 163 2.280592 GCGGTGCGGGTATTAGGG 60.281 66.667 0.00 0.00 0.00 3.53
163 164 3.097921 GCGGTGCGGGTATTAGGGT 62.098 63.158 0.00 0.00 0.00 4.34
164 165 1.523524 CGGTGCGGGTATTAGGGTT 59.476 57.895 0.00 0.00 0.00 4.11
165 166 0.107557 CGGTGCGGGTATTAGGGTTT 60.108 55.000 0.00 0.00 0.00 3.27
166 167 1.138661 CGGTGCGGGTATTAGGGTTTA 59.861 52.381 0.00 0.00 0.00 2.01
167 168 2.804212 CGGTGCGGGTATTAGGGTTTAG 60.804 54.545 0.00 0.00 0.00 1.85
168 169 2.435437 GGTGCGGGTATTAGGGTTTAGA 59.565 50.000 0.00 0.00 0.00 2.10
169 170 3.118298 GGTGCGGGTATTAGGGTTTAGAA 60.118 47.826 0.00 0.00 0.00 2.10
170 171 4.124970 GTGCGGGTATTAGGGTTTAGAAG 58.875 47.826 0.00 0.00 0.00 2.85
171 172 3.136763 GCGGGTATTAGGGTTTAGAAGC 58.863 50.000 0.00 0.00 0.00 3.86
172 173 3.387397 CGGGTATTAGGGTTTAGAAGCG 58.613 50.000 0.00 0.00 0.00 4.68
173 174 3.736720 GGGTATTAGGGTTTAGAAGCGG 58.263 50.000 0.00 0.00 0.00 5.52
174 175 3.389002 GGGTATTAGGGTTTAGAAGCGGA 59.611 47.826 0.00 0.00 0.00 5.54
175 176 4.141642 GGGTATTAGGGTTTAGAAGCGGAA 60.142 45.833 0.00 0.00 0.00 4.30
176 177 5.055144 GGTATTAGGGTTTAGAAGCGGAAG 58.945 45.833 0.00 0.00 0.00 3.46
190 191 2.033793 CGGAAGCGATCGTAACCTAG 57.966 55.000 17.81 2.69 0.00 3.02
191 192 1.768510 GGAAGCGATCGTAACCTAGC 58.231 55.000 17.81 0.00 0.00 3.42
192 193 1.396644 GAAGCGATCGTAACCTAGCG 58.603 55.000 17.81 0.00 0.00 4.26
193 194 0.737219 AAGCGATCGTAACCTAGCGT 59.263 50.000 17.81 0.00 0.00 5.07
194 195 0.029035 AGCGATCGTAACCTAGCGTG 59.971 55.000 17.81 0.00 0.00 5.34
195 196 0.028505 GCGATCGTAACCTAGCGTGA 59.971 55.000 17.81 0.00 0.00 4.35
196 197 1.334779 GCGATCGTAACCTAGCGTGAT 60.335 52.381 17.81 0.00 0.00 3.06
197 198 2.096069 GCGATCGTAACCTAGCGTGATA 60.096 50.000 17.81 0.00 0.00 2.15
198 199 3.477122 CGATCGTAACCTAGCGTGATAC 58.523 50.000 7.03 0.00 0.00 2.24
199 200 3.666374 CGATCGTAACCTAGCGTGATACC 60.666 52.174 7.03 0.00 0.00 2.73
200 201 2.642427 TCGTAACCTAGCGTGATACCA 58.358 47.619 0.00 0.00 0.00 3.25
201 202 3.216800 TCGTAACCTAGCGTGATACCAT 58.783 45.455 0.00 0.00 0.00 3.55
202 203 3.004002 TCGTAACCTAGCGTGATACCATG 59.996 47.826 0.00 0.00 0.00 3.66
203 204 3.243301 CGTAACCTAGCGTGATACCATGT 60.243 47.826 0.00 0.00 0.00 3.21
204 205 4.023792 CGTAACCTAGCGTGATACCATGTA 60.024 45.833 0.00 0.00 0.00 2.29
205 206 5.506151 CGTAACCTAGCGTGATACCATGTAA 60.506 44.000 0.00 0.00 0.00 2.41
206 207 4.585955 ACCTAGCGTGATACCATGTAAG 57.414 45.455 0.00 0.00 0.00 2.34
207 208 4.212716 ACCTAGCGTGATACCATGTAAGA 58.787 43.478 0.00 0.00 0.00 2.10
208 209 4.037684 ACCTAGCGTGATACCATGTAAGAC 59.962 45.833 0.00 0.00 0.00 3.01
209 210 4.037565 CCTAGCGTGATACCATGTAAGACA 59.962 45.833 0.00 0.00 0.00 3.41
210 211 4.465632 AGCGTGATACCATGTAAGACAA 57.534 40.909 0.00 0.00 0.00 3.18
211 212 5.023533 AGCGTGATACCATGTAAGACAAT 57.976 39.130 0.00 0.00 0.00 2.71
212 213 6.156748 AGCGTGATACCATGTAAGACAATA 57.843 37.500 0.00 0.00 0.00 1.90
213 214 6.578944 AGCGTGATACCATGTAAGACAATAA 58.421 36.000 0.00 0.00 0.00 1.40
214 215 7.045416 AGCGTGATACCATGTAAGACAATAAA 58.955 34.615 0.00 0.00 0.00 1.40
215 216 7.715249 AGCGTGATACCATGTAAGACAATAAAT 59.285 33.333 0.00 0.00 0.00 1.40
216 217 8.342634 GCGTGATACCATGTAAGACAATAAATT 58.657 33.333 0.00 0.00 0.00 1.82
222 223 7.619965 ACCATGTAAGACAATAAATTTTGGGG 58.380 34.615 0.00 0.00 0.00 4.96
223 224 7.456269 ACCATGTAAGACAATAAATTTTGGGGA 59.544 33.333 0.00 0.00 0.00 4.81
224 225 8.317679 CCATGTAAGACAATAAATTTTGGGGAA 58.682 33.333 0.00 0.00 0.00 3.97
225 226 9.150348 CATGTAAGACAATAAATTTTGGGGAAC 57.850 33.333 0.00 0.00 0.00 3.62
238 239 4.081050 GGAACCAGCACAACCCTC 57.919 61.111 0.00 0.00 0.00 4.30
239 240 1.456287 GGAACCAGCACAACCCTCT 59.544 57.895 0.00 0.00 0.00 3.69
240 241 0.690762 GGAACCAGCACAACCCTCTA 59.309 55.000 0.00 0.00 0.00 2.43
241 242 1.339151 GGAACCAGCACAACCCTCTAG 60.339 57.143 0.00 0.00 0.00 2.43
242 243 0.693049 AACCAGCACAACCCTCTAGG 59.307 55.000 0.00 0.00 43.78 3.02
254 255 2.407340 CCTCTAGGGGTGGCTTATCT 57.593 55.000 0.00 0.00 0.00 1.98
255 256 2.695585 CCTCTAGGGGTGGCTTATCTT 58.304 52.381 0.00 0.00 0.00 2.40
256 257 3.858135 CCTCTAGGGGTGGCTTATCTTA 58.142 50.000 0.00 0.00 0.00 2.10
257 258 4.430441 CCTCTAGGGGTGGCTTATCTTAT 58.570 47.826 0.00 0.00 0.00 1.73
258 259 4.846940 CCTCTAGGGGTGGCTTATCTTATT 59.153 45.833 0.00 0.00 0.00 1.40
259 260 6.023603 CCTCTAGGGGTGGCTTATCTTATTA 58.976 44.000 0.00 0.00 0.00 0.98
260 261 6.674419 CCTCTAGGGGTGGCTTATCTTATTAT 59.326 42.308 0.00 0.00 0.00 1.28
261 262 7.844779 CCTCTAGGGGTGGCTTATCTTATTATA 59.155 40.741 0.00 0.00 0.00 0.98
262 263 9.440761 CTCTAGGGGTGGCTTATCTTATTATAT 57.559 37.037 0.00 0.00 0.00 0.86
289 290 9.688091 ATAATGGTTGTGTTACAATATGTACCA 57.312 29.630 0.00 0.00 40.59 3.25
290 291 8.588290 AATGGTTGTGTTACAATATGTACCAT 57.412 30.769 7.28 7.28 41.43 3.55
291 292 9.688091 AATGGTTGTGTTACAATATGTACCATA 57.312 29.630 11.64 0.00 39.79 2.74
292 293 9.860650 ATGGTTGTGTTACAATATGTACCATAT 57.139 29.630 10.20 0.00 39.26 1.78
312 313 9.118300 ACCATATACGTACATAGGTATAGAAGC 57.882 37.037 13.82 0.00 40.60 3.86
313 314 9.339850 CCATATACGTACATAGGTATAGAAGCT 57.660 37.037 13.82 0.00 40.60 3.74
319 320 9.902684 ACGTACATAGGTATAGAAGCTATACAT 57.097 33.333 20.20 17.15 45.12 2.29
426 427 2.512745 AAGTTGCCACGTGTGCGA 60.513 55.556 15.65 14.14 42.00 5.10
428 429 2.047151 AAGTTGCCACGTGTGCGAAG 62.047 55.000 15.65 0.00 42.00 3.79
464 465 6.820656 GTCATTGGTCAAATAGTGTCTCTGAT 59.179 38.462 0.00 0.00 0.00 2.90
555 556 6.407865 CCAGAGATATTTGGCCGATAGATGAT 60.408 42.308 0.00 0.00 39.76 2.45
556 557 6.479331 CAGAGATATTTGGCCGATAGATGATG 59.521 42.308 0.00 0.00 39.76 3.07
557 558 5.678583 AGATATTTGGCCGATAGATGATGG 58.321 41.667 0.00 0.00 39.76 3.51
563 564 1.736126 GCCGATAGATGATGGTGCATG 59.264 52.381 0.00 0.00 39.76 4.06
572 573 5.452255 AGATGATGGTGCATGGACTAAAAT 58.548 37.500 17.44 9.02 0.00 1.82
573 574 5.533903 AGATGATGGTGCATGGACTAAAATC 59.466 40.000 17.44 16.52 0.00 2.17
612 613 5.189180 AGAGCATGACCAGATTAAGTTTCC 58.811 41.667 0.00 0.00 0.00 3.13
693 694 3.432782 CGGTGTCGTGAATTCCTAGTAC 58.567 50.000 2.27 0.00 0.00 2.73
694 695 3.128242 CGGTGTCGTGAATTCCTAGTACT 59.872 47.826 2.27 0.00 0.00 2.73
695 696 4.333649 CGGTGTCGTGAATTCCTAGTACTA 59.666 45.833 2.27 1.89 0.00 1.82
701 702 7.016466 GTCGTGAATTCCTAGTACTATCATCG 58.984 42.308 2.33 9.95 0.00 3.84
703 704 6.797513 CGTGAATTCCTAGTACTATCATCGTG 59.202 42.308 2.33 0.00 0.00 4.35
722 723 2.423538 GTGTGCTATAGGCCTTTGGTTG 59.576 50.000 12.58 0.00 40.92 3.77
723 724 2.307392 TGTGCTATAGGCCTTTGGTTGA 59.693 45.455 12.58 0.00 40.92 3.18
724 725 2.945668 GTGCTATAGGCCTTTGGTTGAG 59.054 50.000 12.58 0.00 40.92 3.02
725 726 2.576191 TGCTATAGGCCTTTGGTTGAGT 59.424 45.455 12.58 0.00 40.92 3.41
726 727 2.945668 GCTATAGGCCTTTGGTTGAGTG 59.054 50.000 12.58 0.00 34.27 3.51
727 728 3.370527 GCTATAGGCCTTTGGTTGAGTGA 60.371 47.826 12.58 0.00 34.27 3.41
728 729 2.561478 TAGGCCTTTGGTTGAGTGAC 57.439 50.000 12.58 0.00 0.00 3.67
729 730 0.535102 AGGCCTTTGGTTGAGTGACG 60.535 55.000 0.00 0.00 0.00 4.35
730 731 0.818040 GGCCTTTGGTTGAGTGACGT 60.818 55.000 0.00 0.00 0.00 4.34
731 732 1.021968 GCCTTTGGTTGAGTGACGTT 58.978 50.000 0.00 0.00 0.00 3.99
855 857 0.601311 GCGGATTCTTGGAGATCGGG 60.601 60.000 0.00 0.00 0.00 5.14
885 887 4.215908 TCCTCTTACAAGTCAGTGAGTGT 58.784 43.478 12.71 12.71 0.00 3.55
886 888 4.038042 TCCTCTTACAAGTCAGTGAGTGTG 59.962 45.833 16.31 11.96 0.00 3.82
887 889 3.717707 TCTTACAAGTCAGTGAGTGTGC 58.282 45.455 16.31 0.00 0.00 4.57
888 890 3.132111 TCTTACAAGTCAGTGAGTGTGCA 59.868 43.478 16.31 5.48 0.00 4.57
889 891 2.627515 ACAAGTCAGTGAGTGTGCAT 57.372 45.000 0.00 0.00 0.00 3.96
919 921 1.933500 GCGTCTACATGTTCGGTGTGT 60.934 52.381 2.30 0.00 0.00 3.72
921 923 3.567530 CGTCTACATGTTCGGTGTGTAA 58.432 45.455 2.30 0.00 0.00 2.41
922 924 4.171005 CGTCTACATGTTCGGTGTGTAAT 58.829 43.478 2.30 0.00 0.00 1.89
923 925 5.334319 CGTCTACATGTTCGGTGTGTAATA 58.666 41.667 2.30 0.00 0.00 0.98
924 926 5.228635 CGTCTACATGTTCGGTGTGTAATAC 59.771 44.000 2.30 0.00 0.00 1.89
942 944 1.648504 ACTAGTATGTTTTCGCGGCC 58.351 50.000 6.13 0.00 0.00 6.13
1011 1060 3.432051 GAGAGGCATGTCGGGGTCG 62.432 68.421 0.00 0.00 37.82 4.79
1065 1114 2.583319 CGGCGCGTCATCATCTGT 60.583 61.111 12.89 0.00 0.00 3.41
1227 1276 1.513158 CGTCTCCGTCCAGCTCAAT 59.487 57.895 0.00 0.00 0.00 2.57
1416 1465 2.113139 CAGGCCGACAAGGTGGTT 59.887 61.111 0.00 0.00 43.70 3.67
1418 1467 2.112297 GGCCGACAAGGTGGTTGA 59.888 61.111 0.00 0.00 43.70 3.18
1422 1471 2.317609 CGACAAGGTGGTTGAGGCG 61.318 63.158 0.00 0.00 38.60 5.52
1675 1724 5.688902 CGTATAATACGCGCGTCATATAG 57.311 43.478 41.35 25.54 45.81 1.31
1676 1725 5.193216 CGTATAATACGCGCGTCATATAGT 58.807 41.667 41.35 23.30 45.81 2.12
1677 1726 5.674148 CGTATAATACGCGCGTCATATAGTT 59.326 40.000 41.35 22.90 45.81 2.24
1678 1727 6.193410 CGTATAATACGCGCGTCATATAGTTT 59.807 38.462 41.35 17.90 45.81 2.66
1679 1728 6.939551 ATAATACGCGCGTCATATAGTTTT 57.060 33.333 41.35 19.80 0.00 2.43
1680 1729 5.646467 AATACGCGCGTCATATAGTTTTT 57.354 34.783 41.35 12.80 0.00 1.94
1821 1870 7.172703 GGTCTGTATGGGCTTGTGTTTATATAC 59.827 40.741 0.00 0.00 0.00 1.47
1861 1914 6.534475 TCTGCATATTCTGAAGGCATTTTT 57.466 33.333 12.52 0.00 33.50 1.94
1884 1937 3.559238 TTTGCGAAGAATTCTGAAGGC 57.441 42.857 9.17 10.52 44.75 4.35
1885 1938 2.183478 TGCGAAGAATTCTGAAGGCA 57.817 45.000 9.17 12.90 44.75 4.75
1886 1939 2.715046 TGCGAAGAATTCTGAAGGCAT 58.285 42.857 9.17 0.00 44.75 4.40
1887 1940 3.084039 TGCGAAGAATTCTGAAGGCATT 58.916 40.909 9.17 0.00 44.75 3.56
1888 1941 3.507233 TGCGAAGAATTCTGAAGGCATTT 59.493 39.130 9.17 0.00 44.75 2.32
1889 1942 4.022068 TGCGAAGAATTCTGAAGGCATTTT 60.022 37.500 9.17 0.00 44.75 1.82
1904 1957 9.113838 TGAAGGCATTTTGTTTTGCTTTTTATA 57.886 25.926 0.00 0.00 38.15 0.98
1948 2001 6.873997 TGATGTCAGATTTATAACCACGACT 58.126 36.000 0.00 0.00 0.00 4.18
1954 2007 9.309516 GTCAGATTTATAACCACGACTAATCAA 57.690 33.333 0.00 0.00 0.00 2.57
1992 2046 8.654485 ATGGCATTTATATTTGCAGAGGATAA 57.346 30.769 0.00 0.00 40.66 1.75
2004 2058 7.391148 TTGCAGAGGATAACAATTTTACTCC 57.609 36.000 0.00 0.00 0.00 3.85
2005 2059 5.885912 TGCAGAGGATAACAATTTTACTCCC 59.114 40.000 0.00 0.00 0.00 4.30
2006 2060 6.122964 GCAGAGGATAACAATTTTACTCCCT 58.877 40.000 0.00 0.00 0.00 4.20
2007 2061 6.261158 GCAGAGGATAACAATTTTACTCCCTC 59.739 42.308 0.00 0.00 38.27 4.30
2008 2062 7.569240 CAGAGGATAACAATTTTACTCCCTCT 58.431 38.462 0.00 0.00 46.20 3.69
2009 2063 7.569240 AGAGGATAACAATTTTACTCCCTCTG 58.431 38.462 0.00 0.00 44.30 3.35
2010 2064 7.182930 AGAGGATAACAATTTTACTCCCTCTGT 59.817 37.037 0.00 0.00 44.30 3.41
2011 2065 7.699878 AGGATAACAATTTTACTCCCTCTGTT 58.300 34.615 0.00 0.00 0.00 3.16
2012 2066 7.829706 AGGATAACAATTTTACTCCCTCTGTTC 59.170 37.037 0.00 0.00 0.00 3.18
2013 2067 7.067129 GGATAACAATTTTACTCCCTCTGTTCC 59.933 40.741 0.00 0.00 0.00 3.62
2014 2068 5.584551 ACAATTTTACTCCCTCTGTTCCT 57.415 39.130 0.00 0.00 0.00 3.36
2015 2069 6.697641 ACAATTTTACTCCCTCTGTTCCTA 57.302 37.500 0.00 0.00 0.00 2.94
2016 2070 7.086685 ACAATTTTACTCCCTCTGTTCCTAA 57.913 36.000 0.00 0.00 0.00 2.69
2017 2071 7.523415 ACAATTTTACTCCCTCTGTTCCTAAA 58.477 34.615 0.00 0.00 0.00 1.85
2018 2072 8.170730 ACAATTTTACTCCCTCTGTTCCTAAAT 58.829 33.333 0.00 0.00 0.00 1.40
2019 2073 8.462016 CAATTTTACTCCCTCTGTTCCTAAATG 58.538 37.037 0.00 0.00 0.00 2.32
2020 2074 6.697641 TTTACTCCCTCTGTTCCTAAATGT 57.302 37.500 0.00 0.00 0.00 2.71
2021 2075 7.801893 TTTACTCCCTCTGTTCCTAAATGTA 57.198 36.000 0.00 0.00 0.00 2.29
2022 2076 7.801893 TTACTCCCTCTGTTCCTAAATGTAA 57.198 36.000 0.00 0.00 0.00 2.41
2023 2077 6.301169 ACTCCCTCTGTTCCTAAATGTAAG 57.699 41.667 0.00 0.00 0.00 2.34
2024 2078 5.785940 ACTCCCTCTGTTCCTAAATGTAAGT 59.214 40.000 0.00 0.00 0.00 2.24
2025 2079 6.070710 ACTCCCTCTGTTCCTAAATGTAAGTC 60.071 42.308 0.00 0.00 0.00 3.01
2026 2080 6.023603 TCCCTCTGTTCCTAAATGTAAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
2027 2081 6.500751 TCCCTCTGTTCCTAAATGTAAGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
2028 2082 7.017254 TCCCTCTGTTCCTAAATGTAAGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
2029 2083 7.665974 CCCTCTGTTCCTAAATGTAAGTCTTTT 59.334 37.037 0.00 0.00 0.00 2.27
2030 2084 9.067986 CCTCTGTTCCTAAATGTAAGTCTTTTT 57.932 33.333 0.00 0.00 0.00 1.94
2105 2159 8.897752 AGAATGTAGATTAACTCATTTTGCTCC 58.102 33.333 0.00 0.00 31.65 4.70
2106 2160 6.662414 TGTAGATTAACTCATTTTGCTCCG 57.338 37.500 0.00 0.00 0.00 4.63
2107 2161 6.170506 TGTAGATTAACTCATTTTGCTCCGT 58.829 36.000 0.00 0.00 0.00 4.69
2108 2162 7.324935 TGTAGATTAACTCATTTTGCTCCGTA 58.675 34.615 0.00 0.00 0.00 4.02
2109 2163 7.985184 TGTAGATTAACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2110 2164 7.251704 AGATTAACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2111 2165 6.823689 AGATTAACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2112 2166 7.985184 AGATTAACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
2113 2167 7.534085 TTAACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2114 2168 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
2115 2169 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
2116 2170 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2117 2171 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2118 2172 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2119 2173 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2120 2174 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2121 2175 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2122 2176 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2123 2177 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2124 2178 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
2125 2179 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
2126 2180 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
2127 2181 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
2128 2182 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
2129 2183 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
2130 2184 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
2131 2185 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
2132 2186 5.541845 TGTAGTCACTTGTTGGAATCTCTG 58.458 41.667 0.00 0.00 0.00 3.35
2133 2187 4.963318 AGTCACTTGTTGGAATCTCTGA 57.037 40.909 0.00 0.00 0.00 3.27
2134 2188 5.296151 AGTCACTTGTTGGAATCTCTGAA 57.704 39.130 0.00 0.00 0.00 3.02
2135 2189 5.684704 AGTCACTTGTTGGAATCTCTGAAA 58.315 37.500 0.00 0.00 0.00 2.69
2136 2190 6.122277 AGTCACTTGTTGGAATCTCTGAAAA 58.878 36.000 0.00 0.00 0.00 2.29
2137 2191 6.261826 AGTCACTTGTTGGAATCTCTGAAAAG 59.738 38.462 0.00 0.00 0.00 2.27
2138 2192 6.260936 GTCACTTGTTGGAATCTCTGAAAAGA 59.739 38.462 0.00 0.00 0.00 2.52
2139 2193 6.484643 TCACTTGTTGGAATCTCTGAAAAGAG 59.515 38.462 0.00 0.00 37.28 2.85
2153 2207 9.838339 TCTCTGAAAAGAGATATATTTGGGAAC 57.162 33.333 1.30 0.00 39.74 3.62
2154 2208 8.662781 TCTGAAAAGAGATATATTTGGGAACG 57.337 34.615 0.00 0.00 0.00 3.95
2155 2209 7.715249 TCTGAAAAGAGATATATTTGGGAACGG 59.285 37.037 0.00 0.00 0.00 4.44
2156 2210 7.570132 TGAAAAGAGATATATTTGGGAACGGA 58.430 34.615 0.00 0.00 0.00 4.69
2157 2211 7.715249 TGAAAAGAGATATATTTGGGAACGGAG 59.285 37.037 0.00 0.00 0.00 4.63
2158 2212 5.746990 AGAGATATATTTGGGAACGGAGG 57.253 43.478 0.00 0.00 0.00 4.30
2159 2213 4.532521 AGAGATATATTTGGGAACGGAGGG 59.467 45.833 0.00 0.00 0.00 4.30
2160 2214 4.499472 AGATATATTTGGGAACGGAGGGA 58.501 43.478 0.00 0.00 0.00 4.20
2161 2215 4.532521 AGATATATTTGGGAACGGAGGGAG 59.467 45.833 0.00 0.00 0.00 4.30
2162 2216 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2163 2217 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2177 2231 1.098050 GGAGTAGTTGGCAAGCATGG 58.902 55.000 0.00 0.00 0.00 3.66
2203 2257 8.112449 GCAAATCTGCTTCAGTTTATTTTATGC 58.888 33.333 0.00 0.00 45.74 3.14
2207 2261 6.658816 TCTGCTTCAGTTTATTTTATGCCAGA 59.341 34.615 0.00 0.00 32.61 3.86
2209 2263 7.665690 TGCTTCAGTTTATTTTATGCCAGAAA 58.334 30.769 0.00 0.00 0.00 2.52
2222 2276 0.783579 CCAGAAAATTGCCGCGTTTG 59.216 50.000 4.92 0.00 0.00 2.93
2228 2282 2.583593 TTGCCGCGTTTGCAAACC 60.584 55.556 31.14 23.14 45.11 3.27
2232 2286 1.494766 GCCGCGTTTGCAAACCAAAT 61.495 50.000 31.14 0.00 44.61 2.32
2247 2301 7.274603 CAAACCAAATTTGTCATTCCCAAAT 57.725 32.000 16.73 0.00 42.46 2.32
2262 3584 8.756927 TCATTCCCAAATCAACATAAATTGCTA 58.243 29.630 0.00 0.00 0.00 3.49
2291 3613 3.733727 CGTTCAACTTGCCATGGTTAAAC 59.266 43.478 14.67 1.17 0.00 2.01
2297 3619 4.151883 ACTTGCCATGGTTAAACATCTGT 58.848 39.130 14.67 0.16 0.00 3.41
2301 3623 3.181510 GCCATGGTTAAACATCTGTCGTC 60.182 47.826 14.67 0.00 0.00 4.20
2317 3639 7.860918 TCTGTCGTCAGATATAACACTACTT 57.139 36.000 8.34 0.00 44.58 2.24
2318 3640 8.277490 TCTGTCGTCAGATATAACACTACTTT 57.723 34.615 8.34 0.00 44.58 2.66
2319 3641 8.737175 TCTGTCGTCAGATATAACACTACTTTT 58.263 33.333 8.34 0.00 44.58 2.27
2342 3664 8.429493 TTTGTGATGTTGTTTGATTGCATTTA 57.571 26.923 0.00 0.00 0.00 1.40
2343 3665 7.640616 TGTGATGTTGTTTGATTGCATTTAG 57.359 32.000 0.00 0.00 0.00 1.85
2351 3674 6.757237 TGTTTGATTGCATTTAGGTGTTCAT 58.243 32.000 0.00 0.00 0.00 2.57
2361 3684 0.038166 AGGTGTTCATGGATTGGCGT 59.962 50.000 0.00 0.00 0.00 5.68
2386 3709 1.213537 CCCGTTTGCCATGCTCTTG 59.786 57.895 0.00 0.00 0.00 3.02
2493 3816 7.588488 GTGATGTCGTAGCTATCTTCTTTCTAC 59.412 40.741 0.00 0.00 0.00 2.59
2494 3817 6.997239 TGTCGTAGCTATCTTCTTTCTACA 57.003 37.500 0.00 0.00 32.24 2.74
2496 3819 5.910723 GTCGTAGCTATCTTCTTTCTACAGC 59.089 44.000 0.00 0.00 32.24 4.40
2505 3828 5.189928 TCTTCTTTCTACAGCAACAACCAA 58.810 37.500 0.00 0.00 0.00 3.67
2533 3856 5.351740 GCTGTTACTAAAGCTTAGTTCCTGG 59.648 44.000 0.00 0.00 36.47 4.45
2589 3912 9.657419 ACCAATGATTATTTGTTTTCTTCATCC 57.343 29.630 0.00 0.00 0.00 3.51
2590 3913 9.656040 CCAATGATTATTTGTTTTCTTCATCCA 57.344 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.182030 CCGTCTCTGTTCCGGCTC 59.818 66.667 0.00 0.00 34.62 4.70
3 4 1.519455 GATGCCGTCTCTGTTCCGG 60.519 63.158 0.00 0.00 44.46 5.14
4 5 1.874019 CGATGCCGTCTCTGTTCCG 60.874 63.158 0.00 0.00 0.00 4.30
5 6 0.526524 CTCGATGCCGTCTCTGTTCC 60.527 60.000 0.00 0.00 37.05 3.62
6 7 1.142778 GCTCGATGCCGTCTCTGTTC 61.143 60.000 0.00 0.00 37.05 3.18
7 8 1.153745 GCTCGATGCCGTCTCTGTT 60.154 57.895 0.00 0.00 37.05 3.16
8 9 2.492090 GCTCGATGCCGTCTCTGT 59.508 61.111 0.00 0.00 37.05 3.41
9 10 2.653448 CGCTCGATGCCGTCTCTG 60.653 66.667 0.00 0.00 38.78 3.35
10 11 3.893763 CCGCTCGATGCCGTCTCT 61.894 66.667 0.00 0.00 38.78 3.10
11 12 4.933064 CCCGCTCGATGCCGTCTC 62.933 72.222 0.00 0.00 38.78 3.36
13 14 4.933064 CTCCCGCTCGATGCCGTC 62.933 72.222 0.00 0.00 38.78 4.79
16 17 4.162690 AACCTCCCGCTCGATGCC 62.163 66.667 0.00 0.00 38.78 4.40
17 18 2.892425 CAACCTCCCGCTCGATGC 60.892 66.667 0.00 0.00 38.57 3.91
18 19 1.227089 CTCAACCTCCCGCTCGATG 60.227 63.158 0.00 0.00 0.00 3.84
19 20 3.082579 GCTCAACCTCCCGCTCGAT 62.083 63.158 0.00 0.00 0.00 3.59
20 21 3.760035 GCTCAACCTCCCGCTCGA 61.760 66.667 0.00 0.00 0.00 4.04
21 22 3.997064 CTGCTCAACCTCCCGCTCG 62.997 68.421 0.00 0.00 0.00 5.03
22 23 2.125350 CTGCTCAACCTCCCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
23 24 2.604686 TCTGCTCAACCTCCCGCT 60.605 61.111 0.00 0.00 0.00 5.52
24 25 2.125350 CTCTGCTCAACCTCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
25 26 2.125350 GCTCTGCTCAACCTCCCG 60.125 66.667 0.00 0.00 0.00 5.14
26 27 2.270527 GGCTCTGCTCAACCTCCC 59.729 66.667 0.00 0.00 0.00 4.30
27 28 2.125350 CGGCTCTGCTCAACCTCC 60.125 66.667 0.00 0.00 0.00 4.30
28 29 2.817396 GCGGCTCTGCTCAACCTC 60.817 66.667 0.00 0.00 0.00 3.85
29 30 3.182590 TTGCGGCTCTGCTCAACCT 62.183 57.895 0.00 0.00 35.36 3.50
30 31 2.669569 TTGCGGCTCTGCTCAACC 60.670 61.111 0.00 0.00 35.36 3.77
31 32 1.633852 CTCTTGCGGCTCTGCTCAAC 61.634 60.000 0.00 0.00 35.36 3.18
32 33 1.375140 CTCTTGCGGCTCTGCTCAA 60.375 57.895 0.00 0.00 35.36 3.02
33 34 2.223200 CTCTCTTGCGGCTCTGCTCA 62.223 60.000 0.00 0.00 35.36 4.26
34 35 1.519013 CTCTCTTGCGGCTCTGCTC 60.519 63.158 0.00 0.00 35.36 4.26
35 36 2.578128 CTCTCTTGCGGCTCTGCT 59.422 61.111 0.00 0.00 35.36 4.24
36 37 2.511145 CCTCTCTTGCGGCTCTGC 60.511 66.667 0.00 0.00 0.00 4.26
37 38 2.511145 GCCTCTCTTGCGGCTCTG 60.511 66.667 0.00 0.00 40.68 3.35
38 39 3.780173 GGCCTCTCTTGCGGCTCT 61.780 66.667 0.00 0.00 43.22 4.09
43 44 4.521062 CTCCCGGCCTCTCTTGCG 62.521 72.222 0.00 0.00 0.00 4.85
44 45 4.168291 CCTCCCGGCCTCTCTTGC 62.168 72.222 0.00 0.00 0.00 4.01
45 46 1.965754 CTTCCTCCCGGCCTCTCTTG 61.966 65.000 0.00 0.00 0.00 3.02
46 47 1.687493 CTTCCTCCCGGCCTCTCTT 60.687 63.158 0.00 0.00 0.00 2.85
47 48 2.042435 CTTCCTCCCGGCCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
48 49 3.855853 GCTTCCTCCCGGCCTCTC 61.856 72.222 0.00 0.00 0.00 3.20
58 59 4.400961 ACTGCTGCGGGCTTCCTC 62.401 66.667 13.87 0.00 42.39 3.71
59 60 4.711949 CACTGCTGCGGGCTTCCT 62.712 66.667 13.87 0.00 42.39 3.36
61 62 4.704833 TCCACTGCTGCGGGCTTC 62.705 66.667 13.87 0.00 42.39 3.86
62 63 4.269523 TTCCACTGCTGCGGGCTT 62.270 61.111 13.87 0.00 42.39 4.35
67 68 4.988598 ACCGGTTCCACTGCTGCG 62.989 66.667 0.00 0.00 0.00 5.18
68 69 3.357079 CACCGGTTCCACTGCTGC 61.357 66.667 2.97 0.00 0.00 5.25
69 70 2.669569 CCACCGGTTCCACTGCTG 60.670 66.667 2.97 0.00 0.00 4.41
70 71 3.168528 ACCACCGGTTCCACTGCT 61.169 61.111 2.97 0.00 27.29 4.24
71 72 2.978010 CACCACCGGTTCCACTGC 60.978 66.667 2.97 0.00 31.02 4.40
72 73 2.281484 CCACCACCGGTTCCACTG 60.281 66.667 2.97 0.00 31.02 3.66
73 74 4.265056 GCCACCACCGGTTCCACT 62.265 66.667 2.97 0.00 31.02 4.00
142 143 4.895478 TAATACCCGCACCGCCGC 62.895 66.667 0.00 0.00 0.00 6.53
143 144 2.660552 CTAATACCCGCACCGCCG 60.661 66.667 0.00 0.00 0.00 6.46
144 145 2.280592 CCTAATACCCGCACCGCC 60.281 66.667 0.00 0.00 0.00 6.13
145 146 2.280592 CCCTAATACCCGCACCGC 60.281 66.667 0.00 0.00 0.00 5.68
146 147 0.107557 AAACCCTAATACCCGCACCG 60.108 55.000 0.00 0.00 0.00 4.94
147 148 2.435437 TCTAAACCCTAATACCCGCACC 59.565 50.000 0.00 0.00 0.00 5.01
148 149 3.825143 TCTAAACCCTAATACCCGCAC 57.175 47.619 0.00 0.00 0.00 5.34
149 150 3.432608 GCTTCTAAACCCTAATACCCGCA 60.433 47.826 0.00 0.00 0.00 5.69
150 151 3.136763 GCTTCTAAACCCTAATACCCGC 58.863 50.000 0.00 0.00 0.00 6.13
151 152 3.387397 CGCTTCTAAACCCTAATACCCG 58.613 50.000 0.00 0.00 0.00 5.28
152 153 3.389002 TCCGCTTCTAAACCCTAATACCC 59.611 47.826 0.00 0.00 0.00 3.69
153 154 4.677673 TCCGCTTCTAAACCCTAATACC 57.322 45.455 0.00 0.00 0.00 2.73
154 155 4.510711 GCTTCCGCTTCTAAACCCTAATAC 59.489 45.833 0.00 0.00 0.00 1.89
155 156 4.700700 GCTTCCGCTTCTAAACCCTAATA 58.299 43.478 0.00 0.00 0.00 0.98
156 157 3.542648 GCTTCCGCTTCTAAACCCTAAT 58.457 45.455 0.00 0.00 0.00 1.73
157 158 2.675889 CGCTTCCGCTTCTAAACCCTAA 60.676 50.000 0.00 0.00 0.00 2.69
158 159 1.134907 CGCTTCCGCTTCTAAACCCTA 60.135 52.381 0.00 0.00 0.00 3.53
159 160 0.391263 CGCTTCCGCTTCTAAACCCT 60.391 55.000 0.00 0.00 0.00 4.34
160 161 0.390735 TCGCTTCCGCTTCTAAACCC 60.391 55.000 0.00 0.00 0.00 4.11
161 162 1.593469 GATCGCTTCCGCTTCTAAACC 59.407 52.381 0.00 0.00 0.00 3.27
162 163 1.255600 CGATCGCTTCCGCTTCTAAAC 59.744 52.381 0.26 0.00 0.00 2.01
163 164 1.135199 ACGATCGCTTCCGCTTCTAAA 60.135 47.619 16.60 0.00 0.00 1.85
164 165 0.454600 ACGATCGCTTCCGCTTCTAA 59.545 50.000 16.60 0.00 0.00 2.10
165 166 1.302366 TACGATCGCTTCCGCTTCTA 58.698 50.000 16.60 0.00 0.00 2.10
166 167 0.454600 TTACGATCGCTTCCGCTTCT 59.545 50.000 16.60 0.00 0.00 2.85
167 168 0.571197 GTTACGATCGCTTCCGCTTC 59.429 55.000 16.60 0.00 0.00 3.86
168 169 0.804933 GGTTACGATCGCTTCCGCTT 60.805 55.000 16.60 0.00 0.00 4.68
169 170 1.226888 GGTTACGATCGCTTCCGCT 60.227 57.895 16.60 0.00 0.00 5.52
170 171 0.029834 TAGGTTACGATCGCTTCCGC 59.970 55.000 16.60 0.00 0.00 5.54
171 172 1.925068 GCTAGGTTACGATCGCTTCCG 60.925 57.143 16.60 4.59 0.00 4.30
172 173 1.768510 GCTAGGTTACGATCGCTTCC 58.231 55.000 16.60 14.35 0.00 3.46
173 174 1.268437 ACGCTAGGTTACGATCGCTTC 60.268 52.381 16.60 5.25 0.00 3.86
174 175 0.737219 ACGCTAGGTTACGATCGCTT 59.263 50.000 16.60 0.00 0.00 4.68
175 176 0.029035 CACGCTAGGTTACGATCGCT 59.971 55.000 16.60 6.62 0.00 4.93
176 177 0.028505 TCACGCTAGGTTACGATCGC 59.971 55.000 16.60 0.00 0.00 4.58
177 178 2.682952 ATCACGCTAGGTTACGATCG 57.317 50.000 14.88 14.88 0.00 3.69
178 179 3.251729 TGGTATCACGCTAGGTTACGATC 59.748 47.826 0.00 0.00 0.00 3.69
179 180 3.216800 TGGTATCACGCTAGGTTACGAT 58.783 45.455 0.00 0.00 0.00 3.73
180 181 2.642427 TGGTATCACGCTAGGTTACGA 58.358 47.619 0.00 0.00 0.00 3.43
181 182 3.243301 ACATGGTATCACGCTAGGTTACG 60.243 47.826 0.00 0.00 0.00 3.18
182 183 4.317671 ACATGGTATCACGCTAGGTTAC 57.682 45.455 0.00 0.00 0.00 2.50
183 184 5.829391 TCTTACATGGTATCACGCTAGGTTA 59.171 40.000 0.00 0.00 0.00 2.85
184 185 4.647853 TCTTACATGGTATCACGCTAGGTT 59.352 41.667 0.00 0.00 0.00 3.50
185 186 4.037684 GTCTTACATGGTATCACGCTAGGT 59.962 45.833 0.00 0.00 0.00 3.08
186 187 4.037565 TGTCTTACATGGTATCACGCTAGG 59.962 45.833 0.00 0.00 0.00 3.02
187 188 5.183014 TGTCTTACATGGTATCACGCTAG 57.817 43.478 0.00 0.00 0.00 3.42
188 189 5.585820 TTGTCTTACATGGTATCACGCTA 57.414 39.130 0.00 0.00 0.00 4.26
189 190 4.465632 TTGTCTTACATGGTATCACGCT 57.534 40.909 0.00 0.00 0.00 5.07
190 191 6.838198 TTATTGTCTTACATGGTATCACGC 57.162 37.500 0.00 0.00 0.00 5.34
196 197 8.754080 CCCCAAAATTTATTGTCTTACATGGTA 58.246 33.333 0.00 0.00 0.00 3.25
197 198 7.456269 TCCCCAAAATTTATTGTCTTACATGGT 59.544 33.333 0.00 0.00 0.00 3.55
198 199 7.846066 TCCCCAAAATTTATTGTCTTACATGG 58.154 34.615 0.00 0.00 0.00 3.66
199 200 9.150348 GTTCCCCAAAATTTATTGTCTTACATG 57.850 33.333 0.00 0.00 0.00 3.21
200 201 8.318412 GGTTCCCCAAAATTTATTGTCTTACAT 58.682 33.333 0.00 0.00 0.00 2.29
201 202 7.290248 TGGTTCCCCAAAATTTATTGTCTTACA 59.710 33.333 0.00 0.00 37.98 2.41
202 203 7.672240 TGGTTCCCCAAAATTTATTGTCTTAC 58.328 34.615 0.00 0.00 37.98 2.34
203 204 7.526359 GCTGGTTCCCCAAAATTTATTGTCTTA 60.526 37.037 0.00 0.00 41.27 2.10
204 205 6.744056 GCTGGTTCCCCAAAATTTATTGTCTT 60.744 38.462 0.00 0.00 41.27 3.01
205 206 5.279960 GCTGGTTCCCCAAAATTTATTGTCT 60.280 40.000 0.00 0.00 41.27 3.41
206 207 4.935205 GCTGGTTCCCCAAAATTTATTGTC 59.065 41.667 0.00 0.00 41.27 3.18
207 208 4.349342 TGCTGGTTCCCCAAAATTTATTGT 59.651 37.500 0.00 0.00 41.27 2.71
208 209 4.694982 GTGCTGGTTCCCCAAAATTTATTG 59.305 41.667 0.00 0.00 41.27 1.90
209 210 4.349342 TGTGCTGGTTCCCCAAAATTTATT 59.651 37.500 0.00 0.00 41.27 1.40
210 211 3.906846 TGTGCTGGTTCCCCAAAATTTAT 59.093 39.130 0.00 0.00 41.27 1.40
211 212 3.309296 TGTGCTGGTTCCCCAAAATTTA 58.691 40.909 0.00 0.00 41.27 1.40
212 213 2.122768 TGTGCTGGTTCCCCAAAATTT 58.877 42.857 0.00 0.00 41.27 1.82
213 214 1.799933 TGTGCTGGTTCCCCAAAATT 58.200 45.000 0.00 0.00 41.27 1.82
214 215 1.416030 GTTGTGCTGGTTCCCCAAAAT 59.584 47.619 0.00 0.00 41.27 1.82
215 216 0.827368 GTTGTGCTGGTTCCCCAAAA 59.173 50.000 0.00 0.00 41.27 2.44
216 217 1.045911 GGTTGTGCTGGTTCCCCAAA 61.046 55.000 0.00 0.00 41.27 3.28
217 218 1.456705 GGTTGTGCTGGTTCCCCAA 60.457 57.895 0.00 0.00 41.27 4.12
218 219 2.197324 GGTTGTGCTGGTTCCCCA 59.803 61.111 0.00 0.00 38.87 4.96
219 220 2.600470 GGGTTGTGCTGGTTCCCC 60.600 66.667 0.00 0.00 32.66 4.81
220 221 1.603739 GAGGGTTGTGCTGGTTCCC 60.604 63.158 0.00 0.00 38.50 3.97
221 222 0.690762 TAGAGGGTTGTGCTGGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
222 223 1.339151 CCTAGAGGGTTGTGCTGGTTC 60.339 57.143 0.00 0.00 0.00 3.62
223 224 0.693049 CCTAGAGGGTTGTGCTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
224 225 2.377136 CCTAGAGGGTTGTGCTGGT 58.623 57.895 0.00 0.00 0.00 4.00
235 236 2.407340 AGATAAGCCACCCCTAGAGG 57.593 55.000 0.00 0.00 0.00 3.69
236 237 7.741554 ATAATAAGATAAGCCACCCCTAGAG 57.258 40.000 0.00 0.00 0.00 2.43
263 264 9.688091 TGGTACATATTGTAACACAACCATTAT 57.312 29.630 1.37 0.00 44.80 1.28
286 287 9.118300 GCTTCTATACCTATGTACGTATATGGT 57.882 37.037 21.06 21.06 29.42 3.55
287 288 9.339850 AGCTTCTATACCTATGTACGTATATGG 57.660 37.037 14.40 11.35 29.42 2.74
293 294 9.902684 ATGTATAGCTTCTATACCTATGTACGT 57.097 33.333 16.81 0.00 31.26 3.57
307 308 8.982091 TGACTGTTAGACTATGTATAGCTTCT 57.018 34.615 0.00 0.00 33.68 2.85
308 309 9.619316 CATGACTGTTAGACTATGTATAGCTTC 57.381 37.037 0.00 0.00 33.68 3.86
309 310 9.355916 TCATGACTGTTAGACTATGTATAGCTT 57.644 33.333 0.00 0.00 33.68 3.74
310 311 8.926092 TCATGACTGTTAGACTATGTATAGCT 57.074 34.615 0.00 0.00 33.68 3.32
316 317 8.753133 TCAGAAATCATGACTGTTAGACTATGT 58.247 33.333 0.00 0.00 33.93 2.29
317 318 9.761504 ATCAGAAATCATGACTGTTAGACTATG 57.238 33.333 0.00 0.00 33.93 2.23
320 321 8.420222 CCTATCAGAAATCATGACTGTTAGACT 58.580 37.037 20.83 4.73 36.70 3.24
321 322 8.200792 ACCTATCAGAAATCATGACTGTTAGAC 58.799 37.037 20.83 3.12 36.70 2.59
322 323 8.311395 ACCTATCAGAAATCATGACTGTTAGA 57.689 34.615 20.83 8.80 36.70 2.10
323 324 8.954950 AACCTATCAGAAATCATGACTGTTAG 57.045 34.615 16.12 16.12 35.49 2.34
324 325 9.739276 AAAACCTATCAGAAATCATGACTGTTA 57.261 29.630 0.00 0.33 33.93 2.41
325 326 8.641498 AAAACCTATCAGAAATCATGACTGTT 57.359 30.769 0.00 0.00 33.93 3.16
326 327 8.641498 AAAAACCTATCAGAAATCATGACTGT 57.359 30.769 0.00 0.00 33.93 3.55
327 328 8.733458 TGAAAAACCTATCAGAAATCATGACTG 58.267 33.333 0.00 0.94 0.00 3.51
328 329 8.868522 TGAAAAACCTATCAGAAATCATGACT 57.131 30.769 0.00 0.00 0.00 3.41
403 404 0.963355 ACACGTGGCAACTTGTTGGT 60.963 50.000 21.57 2.25 35.38 3.67
410 411 2.512745 TTCGCACACGTGGCAACT 60.513 55.556 21.57 0.00 41.18 3.16
426 427 2.104967 CCAATGACATGGTGATGGCTT 58.895 47.619 0.00 0.00 38.60 4.35
455 456 8.068512 CCATTTGGATTTGGTCTATCAGAGACA 61.069 40.741 1.02 0.00 46.74 3.41
464 465 6.985653 TTGAAACCATTTGGATTTGGTCTA 57.014 33.333 3.01 0.00 45.44 2.59
536 537 5.188434 CACCATCATCTATCGGCCAAATAT 58.812 41.667 2.24 0.00 0.00 1.28
555 556 4.009675 GTCTGATTTTAGTCCATGCACCA 58.990 43.478 0.00 0.00 0.00 4.17
556 557 3.378427 GGTCTGATTTTAGTCCATGCACC 59.622 47.826 0.00 0.00 0.00 5.01
557 558 4.265073 AGGTCTGATTTTAGTCCATGCAC 58.735 43.478 0.00 0.00 0.00 4.57
572 573 6.942005 TCATGCTCTAATTGAAAAAGGTCTGA 59.058 34.615 0.00 0.00 0.00 3.27
573 574 7.025963 GTCATGCTCTAATTGAAAAAGGTCTG 58.974 38.462 0.00 0.00 0.00 3.51
612 613 5.124138 ACCATCACTCTCTACTACAGTTTCG 59.876 44.000 0.00 0.00 0.00 3.46
693 694 3.445450 AGGCCTATAGCACACGATGATAG 59.555 47.826 1.29 0.00 46.50 2.08
694 695 3.431415 AGGCCTATAGCACACGATGATA 58.569 45.455 1.29 0.00 46.50 2.15
695 696 2.251818 AGGCCTATAGCACACGATGAT 58.748 47.619 1.29 0.00 46.50 2.45
701 702 2.420058 ACCAAAGGCCTATAGCACAC 57.580 50.000 5.16 0.00 46.50 3.82
703 704 2.945668 CTCAACCAAAGGCCTATAGCAC 59.054 50.000 5.16 0.00 46.50 4.40
722 723 3.184581 GGTTCATTCACTCAACGTCACTC 59.815 47.826 0.00 0.00 0.00 3.51
723 724 3.131396 GGTTCATTCACTCAACGTCACT 58.869 45.455 0.00 0.00 0.00 3.41
724 725 2.223377 GGGTTCATTCACTCAACGTCAC 59.777 50.000 0.00 0.00 0.00 3.67
725 726 2.104111 AGGGTTCATTCACTCAACGTCA 59.896 45.455 0.00 0.00 0.00 4.35
726 727 2.767505 AGGGTTCATTCACTCAACGTC 58.232 47.619 0.00 0.00 0.00 4.34
727 728 2.930826 AGGGTTCATTCACTCAACGT 57.069 45.000 0.00 0.00 0.00 3.99
728 729 2.666508 CGTAGGGTTCATTCACTCAACG 59.333 50.000 0.00 0.00 0.00 4.10
729 730 3.678548 GTCGTAGGGTTCATTCACTCAAC 59.321 47.826 0.00 0.00 0.00 3.18
730 731 3.322541 TGTCGTAGGGTTCATTCACTCAA 59.677 43.478 0.00 0.00 0.00 3.02
731 732 2.894765 TGTCGTAGGGTTCATTCACTCA 59.105 45.455 0.00 0.00 0.00 3.41
772 773 1.283029 CAGAAAGCTGGAATCAGGGGA 59.717 52.381 0.00 0.00 41.19 4.81
773 774 1.760192 CAGAAAGCTGGAATCAGGGG 58.240 55.000 0.00 0.00 41.19 4.79
865 867 3.738282 GCACACTCACTGACTTGTAAGAG 59.262 47.826 0.00 0.00 0.00 2.85
866 868 3.132111 TGCACACTCACTGACTTGTAAGA 59.868 43.478 0.00 0.00 0.00 2.10
867 869 3.457234 TGCACACTCACTGACTTGTAAG 58.543 45.455 0.00 0.00 0.00 2.34
886 888 1.428370 TAGACGCGGCAATGTGATGC 61.428 55.000 17.71 0.00 45.67 3.91
887 889 0.301687 GTAGACGCGGCAATGTGATG 59.698 55.000 17.71 0.00 0.00 3.07
888 890 0.108377 TGTAGACGCGGCAATGTGAT 60.108 50.000 17.71 0.00 0.00 3.06
889 891 0.108377 ATGTAGACGCGGCAATGTGA 60.108 50.000 17.71 0.00 0.00 3.58
919 921 4.984161 GGCCGCGAAAACATACTAGTATTA 59.016 41.667 12.87 0.00 0.00 0.98
921 923 3.387397 GGCCGCGAAAACATACTAGTAT 58.613 45.455 8.23 9.71 0.00 2.12
922 924 2.481795 GGGCCGCGAAAACATACTAGTA 60.482 50.000 8.23 4.77 0.00 1.82
923 925 1.648504 GGCCGCGAAAACATACTAGT 58.351 50.000 8.23 0.00 0.00 2.57
924 926 0.935196 GGGCCGCGAAAACATACTAG 59.065 55.000 8.23 0.00 0.00 2.57
942 944 0.179000 GGTATGGGCACAGTGAGAGG 59.821 60.000 4.15 0.00 0.00 3.69
1227 1276 1.185618 CCACGAGGAGGAAGGTGACA 61.186 60.000 0.00 0.00 36.89 3.58
1369 1418 3.049674 CAGCCGCATGGTCGTTGT 61.050 61.111 0.00 0.00 37.67 3.32
1394 1443 4.641645 CCTTGTCGGCCTGCACCA 62.642 66.667 0.00 0.00 0.00 4.17
1686 1735 1.314702 CTACATGACGCGCGATATTCG 59.685 52.381 39.36 20.54 43.89 3.34
1687 1736 2.316792 ACTACATGACGCGCGATATTC 58.683 47.619 39.36 23.90 0.00 1.75
1688 1737 2.417339 ACTACATGACGCGCGATATT 57.583 45.000 39.36 15.03 0.00 1.28
1689 1738 2.051423 CAACTACATGACGCGCGATAT 58.949 47.619 39.36 25.65 0.00 1.63
1690 1739 1.202211 ACAACTACATGACGCGCGATA 60.202 47.619 39.36 24.51 0.00 2.92
1691 1740 0.457853 ACAACTACATGACGCGCGAT 60.458 50.000 39.36 21.24 0.00 4.58
1692 1741 0.168568 TACAACTACATGACGCGCGA 59.831 50.000 39.36 16.76 0.00 5.87
1693 1742 0.293723 GTACAACTACATGACGCGCG 59.706 55.000 30.96 30.96 0.00 6.86
1694 1743 1.582502 GAGTACAACTACATGACGCGC 59.417 52.381 5.73 0.00 0.00 6.86
1695 1744 1.838345 CGAGTACAACTACATGACGCG 59.162 52.381 3.53 3.53 0.00 6.01
1696 1745 2.592897 CACGAGTACAACTACATGACGC 59.407 50.000 0.00 0.00 0.00 5.19
1821 1870 3.068165 TGCAGAATCGTATGGTGGAGTAG 59.932 47.826 0.00 0.00 0.00 2.57
1862 1915 4.202101 TGCCTTCAGAATTCTTCGCAAAAA 60.202 37.500 4.86 0.00 34.02 1.94
1863 1916 3.317711 TGCCTTCAGAATTCTTCGCAAAA 59.682 39.130 4.86 0.00 34.02 2.44
1864 1917 2.884012 TGCCTTCAGAATTCTTCGCAAA 59.116 40.909 4.86 0.00 34.02 3.68
1865 1918 2.503331 TGCCTTCAGAATTCTTCGCAA 58.497 42.857 4.86 0.00 34.02 4.85
1866 1919 2.183478 TGCCTTCAGAATTCTTCGCA 57.817 45.000 4.86 8.19 34.02 5.10
1867 1920 3.772060 AATGCCTTCAGAATTCTTCGC 57.228 42.857 4.86 5.63 34.02 4.70
1868 1921 5.464168 ACAAAATGCCTTCAGAATTCTTCG 58.536 37.500 4.86 0.00 34.02 3.79
1869 1922 7.719778 AAACAAAATGCCTTCAGAATTCTTC 57.280 32.000 4.86 0.00 0.00 2.87
1870 1923 7.467675 GCAAAACAAAATGCCTTCAGAATTCTT 60.468 33.333 4.86 0.00 36.56 2.52
1871 1924 6.017687 GCAAAACAAAATGCCTTCAGAATTCT 60.018 34.615 0.88 0.88 36.56 2.40
1872 1925 6.017687 AGCAAAACAAAATGCCTTCAGAATTC 60.018 34.615 0.00 0.00 43.57 2.17
1873 1926 5.824097 AGCAAAACAAAATGCCTTCAGAATT 59.176 32.000 0.00 0.00 43.57 2.17
1874 1927 5.370679 AGCAAAACAAAATGCCTTCAGAAT 58.629 33.333 0.00 0.00 43.57 2.40
1875 1928 4.768583 AGCAAAACAAAATGCCTTCAGAA 58.231 34.783 0.00 0.00 43.57 3.02
1876 1929 4.405116 AGCAAAACAAAATGCCTTCAGA 57.595 36.364 0.00 0.00 43.57 3.27
1877 1930 5.488645 AAAGCAAAACAAAATGCCTTCAG 57.511 34.783 0.00 0.00 43.57 3.02
1878 1931 5.893897 AAAAGCAAAACAAAATGCCTTCA 57.106 30.435 0.00 0.00 43.57 3.02
1882 1935 9.986833 CCTATATAAAAAGCAAAACAAAATGCC 57.013 29.630 0.00 0.00 43.57 4.40
1904 1957 9.606631 GACATCAGATTTAAAGTTGAGTCCTAT 57.393 33.333 9.45 0.00 0.00 2.57
1992 2046 5.584551 AGGAACAGAGGGAGTAAAATTGT 57.415 39.130 0.00 0.00 0.00 2.71
2001 2055 6.155393 AGACTTACATTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
2002 2056 6.023603 AGACTTACATTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
2003 2057 6.301169 AGACTTACATTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
2004 2058 8.622948 AAAAGACTTACATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
2037 2091 9.719355 ACATCTGTATGTTGTAGTACATTTGAA 57.281 29.630 3.28 0.00 44.07 2.69
2079 2133 8.897752 GGAGCAAAATGAGTTAATCTACATTCT 58.102 33.333 0.00 0.00 32.84 2.40
2080 2134 7.852945 CGGAGCAAAATGAGTTAATCTACATTC 59.147 37.037 0.00 0.00 32.84 2.67
2081 2135 7.336931 ACGGAGCAAAATGAGTTAATCTACATT 59.663 33.333 0.00 0.00 34.99 2.71
2082 2136 6.823689 ACGGAGCAAAATGAGTTAATCTACAT 59.176 34.615 0.00 0.00 0.00 2.29
2083 2137 6.170506 ACGGAGCAAAATGAGTTAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2084 2138 6.663944 ACGGAGCAAAATGAGTTAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2085 2139 7.985184 ACATACGGAGCAAAATGAGTTAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2086 2140 6.823689 ACATACGGAGCAAAATGAGTTAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2087 2141 7.016361 ACATACGGAGCAAAATGAGTTAATC 57.984 36.000 0.00 0.00 0.00 1.75
2088 2142 7.769044 ACTACATACGGAGCAAAATGAGTTAAT 59.231 33.333 0.00 0.00 0.00 1.40
2089 2143 7.101054 ACTACATACGGAGCAAAATGAGTTAA 58.899 34.615 0.00 0.00 0.00 2.01
2090 2144 6.636705 ACTACATACGGAGCAAAATGAGTTA 58.363 36.000 0.00 0.00 0.00 2.24
2091 2145 5.488341 ACTACATACGGAGCAAAATGAGTT 58.512 37.500 0.00 0.00 0.00 3.01
2092 2146 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2093 2147 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2094 2148 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2095 2149 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2096 2150 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2097 2151 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2098 2152 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
2099 2153 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
2100 2154 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
2101 2155 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
2102 2156 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
2103 2157 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
2104 2158 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
2105 2159 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
2106 2160 7.276658 CAGAGATTCCAACAAGTGACTACATAC 59.723 40.741 0.00 0.00 0.00 2.39
2107 2161 7.178451 TCAGAGATTCCAACAAGTGACTACATA 59.822 37.037 0.00 0.00 0.00 2.29
2108 2162 6.014242 TCAGAGATTCCAACAAGTGACTACAT 60.014 38.462 0.00 0.00 0.00 2.29
2109 2163 5.304357 TCAGAGATTCCAACAAGTGACTACA 59.696 40.000 0.00 0.00 0.00 2.74
2110 2164 5.784177 TCAGAGATTCCAACAAGTGACTAC 58.216 41.667 0.00 0.00 0.00 2.73
2111 2165 6.419484 TTCAGAGATTCCAACAAGTGACTA 57.581 37.500 0.00 0.00 0.00 2.59
2112 2166 4.963318 TCAGAGATTCCAACAAGTGACT 57.037 40.909 0.00 0.00 0.00 3.41
2113 2167 6.260936 TCTTTTCAGAGATTCCAACAAGTGAC 59.739 38.462 0.00 0.00 0.00 3.67
2114 2168 6.356556 TCTTTTCAGAGATTCCAACAAGTGA 58.643 36.000 0.00 0.00 0.00 3.41
2115 2169 6.624352 TCTTTTCAGAGATTCCAACAAGTG 57.376 37.500 0.00 0.00 0.00 3.16
2129 2183 7.715249 CCGTTCCCAAATATATCTCTTTTCAGA 59.285 37.037 0.00 0.00 0.00 3.27
2130 2184 7.715249 TCCGTTCCCAAATATATCTCTTTTCAG 59.285 37.037 0.00 0.00 0.00 3.02
2131 2185 7.570132 TCCGTTCCCAAATATATCTCTTTTCA 58.430 34.615 0.00 0.00 0.00 2.69
2132 2186 7.173390 CCTCCGTTCCCAAATATATCTCTTTTC 59.827 40.741 0.00 0.00 0.00 2.29
2133 2187 6.998673 CCTCCGTTCCCAAATATATCTCTTTT 59.001 38.462 0.00 0.00 0.00 2.27
2134 2188 6.465894 CCCTCCGTTCCCAAATATATCTCTTT 60.466 42.308 0.00 0.00 0.00 2.52
2135 2189 5.013183 CCCTCCGTTCCCAAATATATCTCTT 59.987 44.000 0.00 0.00 0.00 2.85
2136 2190 4.532521 CCCTCCGTTCCCAAATATATCTCT 59.467 45.833 0.00 0.00 0.00 3.10
2137 2191 4.530946 TCCCTCCGTTCCCAAATATATCTC 59.469 45.833 0.00 0.00 0.00 2.75
2138 2192 4.499472 TCCCTCCGTTCCCAAATATATCT 58.501 43.478 0.00 0.00 0.00 1.98
2139 2193 4.286291 ACTCCCTCCGTTCCCAAATATATC 59.714 45.833 0.00 0.00 0.00 1.63
2140 2194 4.240323 ACTCCCTCCGTTCCCAAATATAT 58.760 43.478 0.00 0.00 0.00 0.86
2141 2195 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
2142 2196 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2143 2197 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2144 2198 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2145 2199 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
2146 2200 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2147 2201 0.115745 AACTACTCCCTCCGTTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2148 2202 0.535797 CAACTACTCCCTCCGTTCCC 59.464 60.000 0.00 0.00 0.00 3.97
2149 2203 0.535797 CCAACTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
2150 2204 0.108281 GCCAACTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
2151 2205 0.834687 TGCCAACTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
2152 2206 0.834687 TTGCCAACTACTCCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
2153 2207 0.108138 CTTGCCAACTACTCCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
2154 2208 0.393132 GCTTGCCAACTACTCCCTCC 60.393 60.000 0.00 0.00 0.00 4.30
2155 2209 0.324943 TGCTTGCCAACTACTCCCTC 59.675 55.000 0.00 0.00 0.00 4.30
2156 2210 0.995024 ATGCTTGCCAACTACTCCCT 59.005 50.000 0.00 0.00 0.00 4.20
2157 2211 1.098050 CATGCTTGCCAACTACTCCC 58.902 55.000 0.00 0.00 0.00 4.30
2158 2212 1.098050 CCATGCTTGCCAACTACTCC 58.902 55.000 0.00 0.00 0.00 3.85
2159 2213 0.453390 GCCATGCTTGCCAACTACTC 59.547 55.000 0.00 0.00 0.00 2.59
2160 2214 0.251297 TGCCATGCTTGCCAACTACT 60.251 50.000 0.00 0.00 0.00 2.57
2161 2215 0.602562 TTGCCATGCTTGCCAACTAC 59.397 50.000 0.00 0.00 0.00 2.73
2162 2216 1.336131 TTTGCCATGCTTGCCAACTA 58.664 45.000 0.00 0.00 0.00 2.24
2163 2217 0.688487 ATTTGCCATGCTTGCCAACT 59.312 45.000 0.00 0.00 0.00 3.16
2185 2239 8.532977 TTTTCTGGCATAAAATAAACTGAAGC 57.467 30.769 6.68 0.00 0.00 3.86
2191 2245 7.179410 CGGCAATTTTCTGGCATAAAATAAAC 58.821 34.615 19.80 13.39 41.82 2.01
2203 2257 0.783579 CAAACGCGGCAATTTTCTGG 59.216 50.000 12.47 0.00 0.00 3.86
2207 2261 2.682893 TTGCAAACGCGGCAATTTT 58.317 42.105 15.74 1.60 45.57 1.82
2228 2282 7.493743 TGTTGATTTGGGAATGACAAATTTG 57.506 32.000 16.67 16.67 45.60 2.32
2232 2286 9.790344 AATTTATGTTGATTTGGGAATGACAAA 57.210 25.926 0.00 0.00 41.50 2.83
2235 2289 7.550196 AGCAATTTATGTTGATTTGGGAATGAC 59.450 33.333 0.00 0.00 0.00 3.06
2262 3584 4.987912 CCATGGCAAGTTGAACGTTTTTAT 59.012 37.500 7.16 0.00 0.00 1.40
2264 3586 3.194062 CCATGGCAAGTTGAACGTTTTT 58.806 40.909 7.16 0.00 0.00 1.94
2273 3595 4.925054 CAGATGTTTAACCATGGCAAGTTG 59.075 41.667 13.04 0.00 0.00 3.16
2274 3596 4.588528 ACAGATGTTTAACCATGGCAAGTT 59.411 37.500 13.04 10.59 0.00 2.66
2276 3598 4.672542 CGACAGATGTTTAACCATGGCAAG 60.673 45.833 13.04 0.00 0.00 4.01
2297 3619 8.517056 TCACAAAAGTAGTGTTATATCTGACGA 58.483 33.333 0.00 0.00 38.16 4.20
2313 3635 7.038048 TGCAATCAAACAACATCACAAAAGTA 58.962 30.769 0.00 0.00 0.00 2.24
2315 3637 6.347270 TGCAATCAAACAACATCACAAAAG 57.653 33.333 0.00 0.00 0.00 2.27
2316 3638 6.922247 ATGCAATCAAACAACATCACAAAA 57.078 29.167 0.00 0.00 0.00 2.44
2317 3639 6.922247 AATGCAATCAAACAACATCACAAA 57.078 29.167 0.00 0.00 0.00 2.83
2318 3640 6.922247 AAATGCAATCAAACAACATCACAA 57.078 29.167 0.00 0.00 0.00 3.33
2319 3641 6.645827 CCTAAATGCAATCAAACAACATCACA 59.354 34.615 0.00 0.00 0.00 3.58
2342 3664 0.038166 ACGCCAATCCATGAACACCT 59.962 50.000 0.00 0.00 0.00 4.00
2343 3665 0.887933 AACGCCAATCCATGAACACC 59.112 50.000 0.00 0.00 0.00 4.16
2351 3674 3.960237 GTGACGAACGCCAATCCA 58.040 55.556 0.00 0.00 0.00 3.41
2386 3709 5.705441 TGGTGATCTTTCCACATTGTTACTC 59.295 40.000 0.00 0.00 36.31 2.59
2462 3785 3.818210 AGATAGCTACGACATCACTCAGG 59.182 47.826 0.00 0.00 0.00 3.86
2475 3798 7.036220 TGTTGCTGTAGAAAGAAGATAGCTAC 58.964 38.462 0.00 0.00 36.47 3.58
2493 3816 0.387622 CAGCCGATTGGTTGTTGCTG 60.388 55.000 7.67 0.31 41.25 4.41
2494 3817 1.959085 CAGCCGATTGGTTGTTGCT 59.041 52.632 7.67 0.00 41.25 3.91
2505 3828 5.340439 ACTAAGCTTTAGTAACAGCCGAT 57.660 39.130 3.20 4.43 36.62 4.18
2588 3911 8.103948 ACATCTGAACAGAGAAGTTTTAATGG 57.896 34.615 10.26 0.00 41.33 3.16
2589 3912 9.956720 AAACATCTGAACAGAGAAGTTTTAATG 57.043 29.630 18.06 8.84 41.33 1.90
2592 3915 8.731275 TGAAACATCTGAACAGAGAAGTTTTA 57.269 30.769 21.45 17.86 41.33 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.