>input_sequence_73821
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--------ATGTCGGGGTCGGGCGAGATGGCGCCGGCAGCCCGCCAGAGCCGCCGCCGGCGCGTCATCATCTGTGCCAGC
TTCGCCGTGCTCGTCCTGCTCCTCCTGGCTGCCGTGGCCGCCATCGTCCTGCTGGCGGTCCTCCGCCCGCGGGACCCGAC
TACGGAGCTCCTGTCCGCGAACGCCACCGGCGCCGCCCCGCGCGTGACGTTCCCCACCGTCTCCGTCCAGCTCAATGTCA
CCTTCCTCCTCGTGGTGCGCGTGCGCAACCCGAACCCGGCCTCGTTCCGGTACGGCGAGGCCGCCACGACGCTCCTCTAC
CGGGGCGCCCCCGTGGGCAGCGCCGTCGTCCCTGCCGGCCCCGTGCCGAGCCGCGGCACAACGACCATGCGGCTGGGCAT
GATGGTGCAGGCCGACAAGGTGGTTGAGGCGGCCGGGATCGGGGGGCTGCTCGGCGACGTGCTCGCCGGGGAGATGGAGT
TCGAGGCGAGGACGGACGTGAAGGGCCGGGTGACGTTCCTCGGGTTCGTGAAGCGGAACGCCCAGGGGAGGTCGGCGTGC
CGCATCGCCATCGGCGTCCCCGACGTCAAGGTCCGGCGGCAGGAGTGCCACAACGAGGCCAGGCTGTGA-----------
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>chr1B_1_TraesCS1B01G313500
GAGCCGGAACAGAGACGGCATCGAGCGGGAGGTTGAGCAGAGCCGCAAGAGAGGCCGGGAGGAAGCCCGCAGCAGTGGAA
CCGGTGGTGGCGGCGCTCGACATGGCGGCGGCGCGATCGGTGGCGCGGCGGCGGCGGCGGCGGCGGCGGTGCGGGTATTA
GGGTTTAGAAGCGGAAGCGATCGTAACCTAGCGTGATACCATGTAAGACAATAAATTTTGGGGAACCAGCACAACCCTCT
AGGGGTGGCTTATCTTATTATATATAATGGTTGTGTTACAATATGTACCATATACGTACATAGGTATAGAAGCTATACAT
AGTCTAACAGTCATGATTTCTGATAGGTTTTTCAAATTTATTAAAAAGTACTATATTTGTCTTATTTTATTTTATATTTG
TGCACCAACAAGTTGCCACGTGTGCGAAGCCATCACCATGTCATTGGTCAAATAGTGTCTCTGATAGACCAAATCCAAAT
GGTTTCAAAAGTTAATGGTCAAGTTTACACCGTGGTTTAGAGTTTAGAAACCAGAGATATTTGGCCGATAGATGATGGTG
CATGGACTAAAATCAGACCTTTTTCAATTAGAGCATGACCAGATTAAGTTTCCGAAACTGTAGTAGAGAGTGATGGTTTT
GTAAGAGAGCATTCGCACACGAGCATGAGTCACGGTGTCGTGAATTCCTAGTACTATCATCGTGTGCTATAGGCCTTTGG
TTGAGTGACGTTGAGTGAATGAACCCTACGACAGGGACGACGGCGCACCGGTTCCCC-TGATTCCAGCTTTCTGGCACTA
ATAAAACACCTCCGGTTGGCTTGTTAAAATCACCAAAGCGGATTCTTGGAGATCGGGAGGATCCTCCTCTTACAAGTCAG
TGAGTGTGCATCACATTGCCGCGTCTACATGTTCGGTGTGTAATACTAGTATGTTTTCGCGGCC----------------
-----------------CTCTCACTGTGCCCATACCACACTCACGCCAACCGCGAGCATT--------------AGAGCC
TGAGAGGCATGTCGGGGTCGGGCGAGATGGCGCCGGCAGCCCGCCAGAGCCGCCGCCGGCGCGTCATCATCTGTGCCAGC
TTCGCCGTGCTCGTCCTGCTCCTCCTGGCTGCCGTGGCCGCCATCGTCCTGCTGGCGGTCCTCCGCCCGCGGGACCCGAC
TACGGAGCTCCTGTCCGCGAACGCCACCGGCGCCGCCCCGCGCGTGACGTTCCCCACCGTCTCCGTCCAGCTCAATGTCA
CCTTCCTCCTCGTGGTGCGCGTGCGCAACCCGAACCCGGCCTCGTTCCGGTACGGCGAGGCCGCCACGACGCTCCTCTAC
CGGGGCGCCCCCGTGGGCAGCGCCGTCGTCCCTGCCGGCCCCGTGCCGAGCCGCGGCACAACGACCATGCGGCTGGGCAT
GATGGTGCAGGCCGACAAGGTGGTTGAGGCGGCCGGGATCGGGGGGCTGCTCGGCGACGTGCTCGCCGGGGAGATGGAGT
TCGAGGCGAGGACGGACGTGAAGGGCCGGGTGACGTTCCTCGGGTTCGTGAAGCGGAACGCCCAGGGGAGGTCGGCGTGC
CGCATCGCCATCGGCGTCCCCGACGTCAAGGTCCGGCGGCAGGAGTGCCACAACGAGGCCAGGCTGTGAGCGCAGCGCGG
TTCGTACGAGCGTACGCGTGCCGTATAATACGCGCGTCATATAGTTTTTTTTTGCGAATATCGCGCGTCATGTAGTTGTA
CTCGTGTGGAGTGGAGTCGTGTGGTGCAACCCGTGTGCTTCCGTGCGAGTGACTCCCGATTTGTAGATGCACGACATTCG
CGTGGTCTGTATGGGCTTGTGTTTATATACTA----CTCCACCATACGATTCTGCATATTCTGAAGGCATTTTTTTTTTG
CGAAGAATTCTGAAGGCATTTTGTTTTGCTTTTTATATAGGACTCAACTTTAAATCTGATGTCAGATTTATAACCACGAC
TAATCAAATAAATTTTTTTATGG-CATTTATATTTGCAGAGGATAACAATTTTACTCCCTCTGTTCCTAAATGTAAGTCT
TTTTAGACATTTCAAATGTACTACAACATACAGATGTATGTAGACATACTTTAGAATGTAGATTAACTCATTTTGCTCCG
TATGTAGTCACTTGTTGGAATCTCTGAAAAGAGATATATTTGGGAACGGAGGGAGTAGTTGGCAAGCATGGCAAATCTGC
TTCAGTTTATTTTATGCCAGAAAATTGCCGCGTTTGCAAACCAAATTTGTCATTCCCAAAT-------------------
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-------------------------------------------------CAACATAAATTGCTATAAAAACGTTCAACTT
GCCATGGTTAAACATCTGTCGTCAGATATAACACTACTTTTGTGATGTTGTTTGATTGCATTTAG-GTGTTCATGGATTG
GCGTTCGTCACCCGTTTGCCATGCTCTTGAGTAACAATGTGGAAAGATCACCACTGATTTTCCACTATCGGACTATCCTA
CCTGCACATCATGCACTACTCAAACCTGAGTGATGTCGTAGCTATCTTCTTTCTACAGCAACAACCAATCGGCTGTTACT
AAAGCTTAGTTCCTGGATTTTTATCTGCTCCTTTACATATTACAGACCAATGATTATTTGTTTTCTTCATCCATTAAAAC
TTCTCTGTTCAGATGTTTCATCC
>chr1D_330
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---------GTCATGATTTCTGATAAGTTTTTCAAATTTATTAAAAAGTAGTATATATGTCTTATTTTATTTTATTTTTG
TGCGCCAACAGGTTGCCACGTGTGCGGAA----CACCATGTCATTGGTCAAATAGAGTCTCTGACAGACCAAATCCAAAT
GGTTTCAAAAGTAAATGGTCAAGTTTACACCGTGGTTTAGAGTTTAGAAACCAGAGCTATTTGGCCGATAGATGA---TG
CATAGACTAAAAGAACACCTTTTTCAATTAGAGCATGGCCAGATTAGGTTTCAGAAACTGAAGTAGAGAGTGATGGTTTT
GTAAGAGAGCATTCGCACACAAGCATGAGTCACGGTGTCGTGAATTCCTAGTA---TCATCTTATGCTATAGGCCTTTGG
TT----------GAGTGAATGAACCCTACGACAGGGACGACGGCGCACCGGTCTCCC-TGATTCCAGCTTTCTGGCACTA
ATAAAACACCTCTGGTTGGCTTGTTAAAATCATCAAAGCAGATTCTTGGAGATCGGAAGGATCCTC---T----------
-------------------------TACGAGTTCAGTGTGCTG---T-GTACGTTTTTGCGAATAAAACCATATTCCCCG
TGACTCTTCCATGACAGCTCTCACTGTGCTCATACCACACTCACGCCAACCCCGCGCGCGCGCCCGCGAGCAGCAGAGCC
TGAGGTGCATGTCGGGGTCCGGCGAGATGCCGCCGGCAGCCCGCCAGAGCCGCCGCCGGCACGCCATCATCTTCGCCAGC
TTCGTCGTGCTCGTCCTGCTCCTCCTGGCGGCCGTGGCCGCCATCGTCCTGCTGGCGGTCCTCCGGCCGCGGGACCCGAC
CACGGAGCTCCTCTCAGCCAACGCCACGGGCGCCGCCCCGCGCGTGACGCTCCCCACCGTCTCCGTCCAGCTCAACGTCA
CCTTCCTCCTCGTGGTGCGCGTGCGCAACCCGAACCCGGCCTCGTTCCGCTACGGCGAGGCCGCCACGACGCTCCTCTAC
CGGGGCGCCCCCGTGGGCAGCGCCGTCGTCCCGGCCGGCACCGTGCCGAGCCGCGGCGCGACGACCATGCGGCTGGGCAT
GACAGTGCAGGCGGACAAGGTGGTGGCGGCCGCCGGGATCGGGGGCCTGCTCGGCGACGTGCTCGCCGGGGAGATGGAGT
TCGAGGCGAGGACGGACGTGAAGGGCCGGGTGACGTTCCTCGGGTTCGTGAAGCGGAACGCCCAGGGGAGGTCGGCGTGC
CGCATCGCCATCGGCGTCCCCGACGTCAAGGTCCGGCGGCAGGAATGCCACAACGAGGCCAGGCTGTGAGC---GCGCGG
TTCGTACGGGCGTACGCGTGCCGTATAATACGCG-------------------------------CGTCATGTAGTTGTA
CTCGTGTGGAGTGGAGGCGTGTGGTGCAACCCGTGTGCTTCCGTGCGAGTGACTCCCGATTTGTAC-TGCACGACATTCG
CGTGGTCTGTATGGGCTTGTGTTTATATAGTA----CTCCACCATACGATTCTGCATATTCTGAAGGCATTTT-------
----------------------GTTTTGCTTTTTATGTAGGACTCAATTTTAAATCTGATGTCAGATTTACAGCCATGAC
AAATCAGACGA--TTTTTTATGGCAATTTATATTTGCAGAGGATAGCAATGTTA--------------------------
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>chr1A_488
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-------AAATTTAATGGTCAAGTTTACACCGTGTTTTAGAGTTTAGAAACCAGAGCTATTTGGCCGATAGATGA---TG
CATAGACTAAAAGTAGAACCTTTTCAATTAGAGCATGACCAGATTAAGTTTCAGAAACTGTAGTAGAGAGTGATGGTTTT
GTAAGAGAGCGTTCGCACACGAGCATGAGTCACGGTGTCGTGAATTCCTAGTA---TCATCTTATGCCATACGCCTTTGG
TT----------GAGTGAATGAACCCTACGACAGGGACGACGGCGCACCGGTCTCCCCTGCTTCCTACTTTCTGGCACTA
ATAAAACACCTCCGGTTGGCTTGTTAAAATCACCAAAGCGGATTCTTGGAGATCGGAAGGATCCTC---TTACAAGTCAG
TGAGTGCAG--CACATTGCCGCGTCTACATGTTCGGTGTGCAG---TAGTATGTTTTCGCGGCA----------------
-----------------CTCTCACACTGCCCATACCACACTCACGCCAACCGCGAGCACT--------------AGAGCC
TGAGAGGCATGTCGGGGTCCGGCGAGATGCCGCCGGCAGCCCGCCAGAGCCGCCGCCGGCGCGCCATCATCTGCGCCAGC
TTTGCCGTGCTCGTCCTGCTCCTCCTGGCTGCCGTGGCCGCCATCGTCCTGCTGGCGGTCCTCCGCCCGCGGGACCCGAC
CACGGAGCTCCTCTCCGCGAACGCCACCGGCGCCGCCCCGCGCGTGACGTTCCCCACCGTCTCCGTCCAGCTCAACGTCA
CCTTCCTCCTCGTGGTGCGCCTGCGCAACCCGAACCCGGCCTCGTTCCGCTACGGCGAGGCCGCCACGACGCTCCTCTAC
CGGGGCGCACCCGTGGGCAGCGCCGTCGTCCCGGCCGGCACCGTGCCGAGCCGCGGCGCGACGACCATGCGGCTGGGCAT
GACGGTGCAGGCCGACAAGGTGGTGGCGGCCGCCGGGATCGGGGGCCTGCTCGGCGACGTGCTCGCCGGGGAGATGGAGT
TCGAGGCGAGGACGGACGTGAAGGGCCGGGTGACGTTCCTCGGGTTCGTGAAGCGGAACGCCCAGGGGAGGTCGGCGTGC
CGCATCGCCATCGGCGTCCCCGACGTCAAGGTCCGGCGCCAGGAGTGCCACAACGAGGCCAGGCTGTGAGCGCAGCGCGG
TTCGTACGAGCGTACGCGTGCCGTATAATACGCA-------------------------------CGTCATGTAGTTGTG
CTCGTGCGGAGTGGAGGCGTGTGGTGCAACCCGTGTGCTTCCGTGCGAGTGACTCCCGATTTGTAGATGCATGACATTCG
CGTGGTCTGTATGGGCTTGTGTTTATATAGTACGTACTCCACCATACGATTCTGCATATTCTGAAGGCATTTT-------
----------------------GTTTTGTTTTTTATGTAAGA-TCAAATTTAAATCTGATGTCAGATTTATAGCCATGAC
AAATCAGATGA--TTTTTTATGG-AATTTATATTTGCAGAGGATAGCAAGTTTA--------------------------
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---------------------------------------------------------GTTGGCAAGCATGACAAATCTAT
TTCAATTTATTTTATGTCAGGATATTGCCGCGTTTACAAACTAAAATTTTCATTCCCACACCAGTATAAATGAAAAACGT
TTGTCATCTACACGCCGGCCGAACGCTTTGATCGGTCGTCTTCTCGCACGCGCTCATATTCATCTCTTTCCTCGATCACG
CGCAGGTGTTGCCAAAGGGCACAAGGTGGAGCTCTCCGCAGTCGGCCTCCATCCCAGGCGCCAGCTCCTCGCAGGCCTCG
GCCACGGCCGTGAGCGGCTGCTCCATCCCTTGCCGCACGCGCGGCCACCATGGTCGCCGCTGTCACACATCTGCTCGGAG
CTTGCGCGGGTGATCCTAGTAGCTGTGGAGCGACCACGGTGGCGCCTTGCATGCCGGTTTTTTGCTATGAGCGAGTGTTG
TTGGGGGAGTGCACGACGATGTCGTGAACCTGGCACCCATGGCCGCCACTGTTGGGGTGCCGTATCTCGCCAAACCTACA
GGTGAGGCATTGCAGAACCCGCCGCAGACCTCCATGTGCTGCAACCGCTAAAAAAAGTTTCAAACTCTAGATGAAAAGTT
TCAACCGGATATACGGAAAGCTGCAAGCGTTCAGCGCCATCGAGGAAAGATACAACCGTCTACAGAAAATCCTGCAACCT
TCGATGAAAACTGCTTCAACCGAACGATAGACGAAGCTTTCACCCAGGCGCCGCTCAAAACGAAAAAAGTTTCAATCGTT
TACAAAAAAGCTTCTATCGTAGAGGGAAAAAGCTTCAACCATTGAGAGAGAAATCTACAACCGGACTCTGCAGAATCAGA
AAATTTGCAACCGTTTTGACAGAGAAAGCTTGAATCGTATGTGCGAAAAGCTTCAACTGGTACTTTGTTTTTGCTTCGAC
AGGTGGACAATTTTGCTGCTACTGGAGGCAACCCGAGGAGAGATGCATCTTTTTTGTAAGCTCACCGTCGGGGCGCTGTG
TCCGGTGAACCGTCGCCACCGGAGTGTGGCCGTTGTGCACTGGAGTTGTGAGCAGTGCCACCGGAGCTACAAGGCTGCAA
CCATTTGCGCATGCTGGTGCATCCACGGAGGTGAGAAATGCACGAAGGCGACATAGGTGAGGGCGGCGACCAGCGGCGAT
GGCGGCGACCGGCGGTGAGGGAAGACGAGGAGGCGAGGCGAAGCGGCCAGCACGTGCGAGGCGGTACTCTCCCTTTCCCG
TGCGGGAGGTTGAAGATGGGAGGTTGGAGATGATAGAGAAAGGGATCTGACGGCTCGGGGGTGCCAGATATGACAGGCAG
GGTGCAACCGGCTCAAATTTGGGCCAGTGCGCCGACGCAGATCACTGCCCAACATAAATTGCTGTTAAAACGTTTGATTT
GCCATGGTTAAATATCTGACGTTAGATATAACACCATCG--GTGATGTTGTTTGATTGCATTTTCTGTGTTCACGGATTG
GCGCTCGTCACCCGTTTGCCATGCTCTTCAGTAACAATGTGGAAAGATCACCACTGATTTTCCACTATCGGACTATCCTA
CCTGCACATCATGCGCTTCTCAAAGCTGAGTGATGTCATAGCTATCTTCTTTCTATCGTAACAACCAGTCGGCTGTTACT
AAAGCTTAGTTCCTGAATTTTTATCTGCTCCTTTACATATTACAGACCAATGATTATTTGCTTTCTTCATTTCTCAAAAC
TTCTCTGTTCAGATGTTTCATCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------S------------------------S-----S------------------S----
---S------S---------------S-SSSSS----------------------S--------S---------------
--------------------------------------------------------S------------------SSS--
---S--------SS--------------------------------------S---------------------------
-----------------------------------------------------SSS-----S-S----------------
--SSSSSSSSSS----------------------------------------SS--------------------------
--------------------------------------------------------S---------SSS-----------
------SSSSS-----------------------------S-SSSS-----------------S----------------
----------------------------------------------------------S---------------------
-------------------S---------S---------------------------------S---------S------
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S-----------S--------------------------------------------------------------S----
-------------------------------------------------S------------------------------
--------------------------------S------S-----------------S-S--------------------
--S---------------------S-S---S--------------S----------------------------------
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----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
----------------S---------------------------------------------------------------
-----------------------------S-------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------S----------S------------------------S---S---
S-----S--S-SS-----------S--------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------SS
----S-----------S---S-S------------S-----S---S--S---------S-S-------------------
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---------------------------------------------------------------S-S--------SS-S--
------------S-----S---S-----------S-SSSSS----------------------SS--------S------
---S------------------------S---------------------------------------------------
--------------S--S------S------------S-----------------SS-S--------S------------
---------------S--------------------------------------------S---------SSS-S-----
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>forward_196
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----------------GCGATCGTAACCTAGCGTGA--------------------------------------------
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>reverse_2207
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----------------------------------------------CGGAGGGAGTAGTTGGCAAG--------------
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