Multiple sequence alignment - TraesCS1B01G297400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G297400 chr1B 100.000 4279 0 0 1 4279 517894641 517898919 0.000000e+00 7902.0
1 TraesCS1B01G297400 chr1A 92.593 1242 82 5 695 1935 485223329 485224561 0.000000e+00 1775.0
2 TraesCS1B01G297400 chr1A 89.688 1251 124 4 2259 3508 485241085 485242331 0.000000e+00 1591.0
3 TraesCS1B01G297400 chr1A 84.218 678 46 20 29 698 485216153 485216777 1.700000e-168 603.0
4 TraesCS1B01G297400 chr1A 91.234 308 11 3 1985 2277 485224558 485224864 5.150000e-109 405.0
5 TraesCS1B01G297400 chr1D 90.370 1163 65 15 1133 2277 385116913 385118046 0.000000e+00 1483.0
6 TraesCS1B01G297400 chr1D 92.625 800 47 6 3176 3972 385602383 385603173 0.000000e+00 1140.0
7 TraesCS1B01G297400 chr1D 89.323 665 66 5 2518 3180 385592993 385593654 0.000000e+00 830.0
8 TraesCS1B01G297400 chr1D 85.177 479 51 12 231 702 385053595 385054060 1.390000e-129 473.0
9 TraesCS1B01G297400 chr1D 93.916 263 16 0 2259 2521 385556186 385556448 8.620000e-107 398.0
10 TraesCS1B01G297400 chr1D 90.291 309 20 1 3971 4279 385603524 385603822 3.100000e-106 396.0
11 TraesCS1B01G297400 chr1D 94.118 102 6 0 101 202 385053500 385053601 5.730000e-34 156.0
12 TraesCS1B01G297400 chr1D 100.000 33 0 0 334 366 385053728 385053760 1.280000e-05 62.1
13 TraesCS1B01G297400 chr1D 100.000 28 0 0 29 56 385053458 385053485 8.000000e-03 52.8
14 TraesCS1B01G297400 chr5D 85.000 400 38 12 1943 2320 339101232 339101631 1.870000e-103 387.0
15 TraesCS1B01G297400 chr5D 100.000 30 0 0 2138 2167 97834549 97834520 5.980000e-04 56.5
16 TraesCS1B01G297400 chr5A 81.366 161 25 5 1943 2099 439864826 439864985 4.490000e-25 126.0
17 TraesCS1B01G297400 chr5B 100.000 30 0 0 2138 2167 107199115 107199086 5.980000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G297400 chr1B 517894641 517898919 4278 False 7902 7902 100.0000 1 4279 1 chr1B.!!$F1 4278
1 TraesCS1B01G297400 chr1A 485241085 485242331 1246 False 1591 1591 89.6880 2259 3508 1 chr1A.!!$F2 1249
2 TraesCS1B01G297400 chr1A 485223329 485224864 1535 False 1090 1775 91.9135 695 2277 2 chr1A.!!$F3 1582
3 TraesCS1B01G297400 chr1A 485216153 485216777 624 False 603 603 84.2180 29 698 1 chr1A.!!$F1 669
4 TraesCS1B01G297400 chr1D 385116913 385118046 1133 False 1483 1483 90.3700 1133 2277 1 chr1D.!!$F1 1144
5 TraesCS1B01G297400 chr1D 385592993 385593654 661 False 830 830 89.3230 2518 3180 1 chr1D.!!$F3 662
6 TraesCS1B01G297400 chr1D 385602383 385603822 1439 False 768 1140 91.4580 3176 4279 2 chr1D.!!$F5 1103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 427 0.032815 GGAGAGCGGAGGAGCAATAC 59.967 60.0 0.00 0.0 40.15 1.89 F
848 881 0.533755 GCTGCTCGGGCTATCAACAT 60.534 55.0 9.62 0.0 39.59 2.71 F
2023 2110 0.179004 TTCCTGTGCAACCGGTGAAT 60.179 50.0 8.52 0.0 42.47 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1213 1246 0.535102 ACCTGTCCGAAAGCCAACTG 60.535 55.0 0.0 0.0 0.0 3.16 R
2520 2622 0.175989 GGAGCAGTTAAGTCCCGAGG 59.824 60.0 0.0 0.0 0.0 4.63 R
3872 3976 0.107703 CACATCACATGGCCGGTAGT 60.108 55.0 1.9 0.0 33.6 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 0.609151 TGCCGTCTCCAAATCGGTTA 59.391 50.000 0.00 0.00 45.11 2.85
77 79 5.481105 TCCAAATCGGTTATGTCGTACTTT 58.519 37.500 0.00 0.00 35.57 2.66
88 90 9.793252 GGTTATGTCGTACTTTGATTTCTACTA 57.207 33.333 0.00 0.00 0.00 1.82
93 95 6.971756 GTCGTACTTTGATTTCTACTAGGTCC 59.028 42.308 0.00 0.00 0.00 4.46
95 97 5.997384 ACTTTGATTTCTACTAGGTCCGT 57.003 39.130 0.00 0.00 0.00 4.69
106 108 3.097614 ACTAGGTCCGTAAGTCATGCTT 58.902 45.455 7.40 7.40 41.05 3.91
110 112 1.654105 GTCCGTAAGTCATGCTTGTCG 59.346 52.381 11.24 13.45 38.05 4.35
111 113 0.999406 CCGTAAGTCATGCTTGTCGG 59.001 55.000 20.67 20.67 43.42 4.79
150 152 4.872664 GCTCTAATTGATAGCGTGGTACT 58.127 43.478 0.00 0.00 0.00 2.73
151 153 4.681942 GCTCTAATTGATAGCGTGGTACTG 59.318 45.833 0.00 0.00 0.00 2.74
152 154 5.196341 TCTAATTGATAGCGTGGTACTGG 57.804 43.478 0.00 0.00 0.00 4.00
153 155 3.906720 AATTGATAGCGTGGTACTGGT 57.093 42.857 0.00 0.00 0.00 4.00
154 156 2.953466 TTGATAGCGTGGTACTGGTC 57.047 50.000 0.00 0.00 0.00 4.02
155 157 1.842052 TGATAGCGTGGTACTGGTCA 58.158 50.000 0.00 0.00 0.00 4.02
156 158 1.475280 TGATAGCGTGGTACTGGTCAC 59.525 52.381 0.00 0.00 0.00 3.67
160 162 4.261888 GTGGTACTGGTCACGCAG 57.738 61.111 0.00 0.00 0.00 5.18
161 163 1.663739 GTGGTACTGGTCACGCAGA 59.336 57.895 0.00 0.00 0.00 4.26
162 164 0.388649 GTGGTACTGGTCACGCAGAG 60.389 60.000 0.00 0.00 0.00 3.35
163 165 0.538746 TGGTACTGGTCACGCAGAGA 60.539 55.000 0.00 0.00 0.00 3.10
164 166 0.171455 GGTACTGGTCACGCAGAGAG 59.829 60.000 0.00 0.00 0.00 3.20
165 167 1.166129 GTACTGGTCACGCAGAGAGA 58.834 55.000 0.00 0.00 0.00 3.10
166 168 1.746220 GTACTGGTCACGCAGAGAGAT 59.254 52.381 0.00 0.00 0.00 2.75
167 169 0.529833 ACTGGTCACGCAGAGAGATG 59.470 55.000 0.00 0.00 0.00 2.90
168 170 0.813821 CTGGTCACGCAGAGAGATGA 59.186 55.000 0.00 0.00 0.00 2.92
169 171 0.813821 TGGTCACGCAGAGAGATGAG 59.186 55.000 0.00 0.00 0.00 2.90
183 185 5.186797 AGAGAGATGAGAACCTGTAAACCTG 59.813 44.000 0.00 0.00 0.00 4.00
188 190 6.440647 AGATGAGAACCTGTAAACCTGTATGA 59.559 38.462 0.00 0.00 0.00 2.15
248 251 8.673711 CATGGTTCTTAATTCGAGAATAAACCA 58.326 33.333 22.48 22.48 40.00 3.67
264 267 8.806146 AGAATAAACCAATGTCTATGTTTTGCT 58.194 29.630 0.00 0.00 33.36 3.91
271 274 7.394359 ACCAATGTCTATGTTTTGCTACTGATT 59.606 33.333 0.00 0.00 0.00 2.57
281 284 2.025155 TGCTACTGATTCTCGACCCTC 58.975 52.381 0.00 0.00 0.00 4.30
347 380 8.728088 AAACTGAATAGTTATTCTTTTGCGTG 57.272 30.769 11.86 0.00 46.14 5.34
348 381 7.667043 ACTGAATAGTTATTCTTTTGCGTGA 57.333 32.000 11.86 0.00 41.93 4.35
349 382 8.268850 ACTGAATAGTTATTCTTTTGCGTGAT 57.731 30.769 11.86 0.00 41.93 3.06
350 383 8.391106 ACTGAATAGTTATTCTTTTGCGTGATC 58.609 33.333 11.86 0.00 41.93 2.92
351 384 8.262715 TGAATAGTTATTCTTTTGCGTGATCA 57.737 30.769 11.86 0.00 41.93 2.92
352 385 8.726068 TGAATAGTTATTCTTTTGCGTGATCAA 58.274 29.630 0.00 0.00 41.93 2.57
353 386 9.554724 GAATAGTTATTCTTTTGCGTGATCAAA 57.445 29.630 0.00 0.00 39.13 2.69
356 389 8.231304 AGTTATTCTTTTGCGTGATCAAATTG 57.769 30.769 0.00 0.00 36.04 2.32
357 390 8.081633 AGTTATTCTTTTGCGTGATCAAATTGA 58.918 29.630 0.00 0.00 36.04 2.57
358 391 6.695292 ATTCTTTTGCGTGATCAAATTGAC 57.305 33.333 0.00 0.00 36.04 3.18
359 392 5.180367 TCTTTTGCGTGATCAAATTGACA 57.820 34.783 0.00 0.00 36.04 3.58
360 393 5.214417 TCTTTTGCGTGATCAAATTGACAG 58.786 37.500 0.00 0.00 36.04 3.51
361 394 4.566545 TTTGCGTGATCAAATTGACAGT 57.433 36.364 0.00 0.00 31.64 3.55
362 395 5.681337 TTTGCGTGATCAAATTGACAGTA 57.319 34.783 0.00 0.00 31.64 2.74
363 396 5.878332 TTGCGTGATCAAATTGACAGTAT 57.122 34.783 0.00 0.00 0.00 2.12
364 397 6.976636 TTGCGTGATCAAATTGACAGTATA 57.023 33.333 0.00 0.00 0.00 1.47
365 398 6.344572 TGCGTGATCAAATTGACAGTATAC 57.655 37.500 0.00 0.00 0.00 1.47
366 399 6.106003 TGCGTGATCAAATTGACAGTATACT 58.894 36.000 0.00 0.00 0.00 2.12
390 423 2.283894 TTGGAGAGCGGAGGAGCA 60.284 61.111 0.00 0.00 40.15 4.26
392 425 1.267574 TTGGAGAGCGGAGGAGCAAT 61.268 55.000 0.00 0.00 40.15 3.56
394 427 0.032815 GGAGAGCGGAGGAGCAATAC 59.967 60.000 0.00 0.00 40.15 1.89
399 432 0.603975 GCGGAGGAGCAATACCATCC 60.604 60.000 0.00 0.00 37.05 3.51
405 438 3.879892 GAGGAGCAATACCATCCAAGTTC 59.120 47.826 0.00 0.00 35.45 3.01
406 439 3.525199 AGGAGCAATACCATCCAAGTTCT 59.475 43.478 0.00 0.00 35.45 3.01
435 468 4.649674 GTGGATTCAGGGTGTAGTCATCTA 59.350 45.833 0.00 0.00 0.00 1.98
443 476 7.952671 TCAGGGTGTAGTCATCTAATTGTATC 58.047 38.462 0.00 0.00 0.00 2.24
461 494 8.725405 ATTGTATCAACATATGACGTTAACCA 57.275 30.769 10.38 0.00 41.93 3.67
462 495 8.725405 TTGTATCAACATATGACGTTAACCAT 57.275 30.769 10.38 1.45 41.93 3.55
463 496 8.137210 TGTATCAACATATGACGTTAACCATG 57.863 34.615 10.38 0.00 41.93 3.66
465 498 6.415798 TCAACATATGACGTTAACCATGTG 57.584 37.500 10.38 15.25 37.73 3.21
466 499 6.166982 TCAACATATGACGTTAACCATGTGA 58.833 36.000 20.46 10.73 36.05 3.58
467 500 6.312672 TCAACATATGACGTTAACCATGTGAG 59.687 38.462 20.46 14.63 36.05 3.51
468 501 5.116180 ACATATGACGTTAACCATGTGAGG 58.884 41.667 20.46 3.68 36.05 3.86
469 502 3.973206 ATGACGTTAACCATGTGAGGA 57.027 42.857 0.00 0.00 0.00 3.71
470 503 3.755112 TGACGTTAACCATGTGAGGAA 57.245 42.857 0.00 0.00 0.00 3.36
471 504 4.074627 TGACGTTAACCATGTGAGGAAA 57.925 40.909 0.00 0.00 0.00 3.13
472 505 4.452825 TGACGTTAACCATGTGAGGAAAA 58.547 39.130 0.00 0.00 0.00 2.29
473 506 5.067273 TGACGTTAACCATGTGAGGAAAAT 58.933 37.500 0.00 0.00 0.00 1.82
474 507 5.533154 TGACGTTAACCATGTGAGGAAAATT 59.467 36.000 0.00 0.00 0.00 1.82
475 508 5.768317 ACGTTAACCATGTGAGGAAAATTG 58.232 37.500 0.00 0.00 0.00 2.32
476 509 5.300792 ACGTTAACCATGTGAGGAAAATTGT 59.699 36.000 0.00 0.00 0.00 2.71
477 510 6.183360 ACGTTAACCATGTGAGGAAAATTGTT 60.183 34.615 0.00 0.00 0.00 2.83
478 511 6.699642 CGTTAACCATGTGAGGAAAATTGTTT 59.300 34.615 0.00 0.00 0.00 2.83
479 512 7.096230 CGTTAACCATGTGAGGAAAATTGTTTC 60.096 37.037 0.00 0.00 42.16 2.78
480 513 5.867903 ACCATGTGAGGAAAATTGTTTCA 57.132 34.783 1.97 0.00 44.29 2.69
481 514 5.600696 ACCATGTGAGGAAAATTGTTTCAC 58.399 37.500 7.08 7.08 44.29 3.18
482 515 4.681025 CCATGTGAGGAAAATTGTTTCACG 59.319 41.667 8.73 0.00 44.29 4.35
483 516 4.300189 TGTGAGGAAAATTGTTTCACGG 57.700 40.909 8.73 0.00 44.29 4.94
484 517 3.697045 TGTGAGGAAAATTGTTTCACGGT 59.303 39.130 8.73 0.00 44.29 4.83
485 518 4.041723 GTGAGGAAAATTGTTTCACGGTG 58.958 43.478 0.56 0.56 44.29 4.94
486 519 3.049912 GAGGAAAATTGTTTCACGGTGC 58.950 45.455 2.51 0.00 44.29 5.01
487 520 2.428890 AGGAAAATTGTTTCACGGTGCA 59.571 40.909 2.51 0.00 44.29 4.57
488 521 3.069443 AGGAAAATTGTTTCACGGTGCAT 59.931 39.130 2.51 0.00 44.29 3.96
491 524 4.792528 AAATTGTTTCACGGTGCATTTG 57.207 36.364 2.51 0.00 0.00 2.32
502 535 2.397549 GGTGCATTTGCTGTTTCAGTC 58.602 47.619 3.94 0.00 42.66 3.51
602 635 1.529244 GGGTGGAGCTGCAGTTGTT 60.529 57.895 16.64 0.00 0.00 2.83
664 697 3.708210 TCCTGCTGGGAAGGTACG 58.292 61.111 10.07 0.00 41.91 3.67
715 748 9.937577 GCAAATTTAGATTACAATTCGTTTCAC 57.062 29.630 0.00 0.00 0.00 3.18
720 753 6.312399 AGATTACAATTCGTTTCACTTGCA 57.688 33.333 0.00 0.00 0.00 4.08
732 765 1.480545 TCACTTGCATAGCTCGCCTAA 59.519 47.619 5.65 0.00 0.00 2.69
803 836 6.434340 ACAAACCTTTTATGAGAGGTGGAATC 59.566 38.462 0.00 0.00 45.32 2.52
812 845 1.636003 AGAGGTGGAATCCTGGTTTCC 59.364 52.381 23.82 23.82 42.52 3.13
824 857 5.319043 TCCTGGTTTCCTCAAAGTTACAT 57.681 39.130 0.00 0.00 0.00 2.29
830 863 8.220755 TGGTTTCCTCAAAGTTACATATATGC 57.779 34.615 12.79 0.00 0.00 3.14
848 881 0.533755 GCTGCTCGGGCTATCAACAT 60.534 55.000 9.62 0.00 39.59 2.71
849 882 1.224075 CTGCTCGGGCTATCAACATG 58.776 55.000 9.62 0.00 39.59 3.21
852 885 1.869767 GCTCGGGCTATCAACATGAAG 59.130 52.381 0.00 0.00 35.22 3.02
881 914 0.613260 ATATCCAGGTGCACACGTGT 59.387 50.000 17.22 17.22 43.44 4.49
905 938 5.704978 TGTGCACACAGACACACAAATATAT 59.295 36.000 17.42 0.00 41.67 0.86
974 1007 4.935808 CGCTAACTGTACTCCCTCATTTTT 59.064 41.667 0.00 0.00 0.00 1.94
1053 1086 2.789409 AATGGAGCCGAAAAGCTACT 57.211 45.000 0.00 0.00 44.68 2.57
1059 1092 1.065854 AGCCGAAAAGCTACTCATGCT 60.066 47.619 0.00 0.00 42.70 3.79
1126 1159 2.728839 GTCTCTTGACGAGTTTGAGCTG 59.271 50.000 0.00 0.00 40.75 4.24
1147 1180 6.205076 AGCTGCATTCAGAATTTATAGCTGAG 59.795 38.462 14.74 3.74 42.95 3.35
1171 1204 8.593945 AGGCTTTCAATTGATTAGGTGAAATA 57.406 30.769 9.40 0.00 38.81 1.40
1190 1223 8.058915 GTGAAATATACGAGAAAGCTGATGAAC 58.941 37.037 0.00 0.00 0.00 3.18
1198 1231 4.579869 AGAAAGCTGATGAACGTGGTATT 58.420 39.130 0.00 0.00 0.00 1.89
1201 1234 2.236146 AGCTGATGAACGTGGTATTCCA 59.764 45.455 0.00 0.00 42.05 3.53
1204 1237 4.260784 GCTGATGAACGTGGTATTCCAATC 60.261 45.833 0.00 0.00 46.15 2.67
1213 1246 4.260212 CGTGGTATTCCAATCGTGAATCAC 60.260 45.833 2.75 2.75 46.15 3.06
1222 1255 2.254546 TCGTGAATCACAGTTGGCTT 57.745 45.000 14.24 0.00 33.40 4.35
1224 1257 2.548057 TCGTGAATCACAGTTGGCTTTC 59.452 45.455 14.24 0.00 33.40 2.62
1225 1258 2.662791 CGTGAATCACAGTTGGCTTTCG 60.663 50.000 14.24 0.00 33.40 3.46
1277 1310 9.905171 ACTTACAAAGTTACTAAGTACACTAGC 57.095 33.333 0.00 0.00 39.04 3.42
1342 1378 4.336713 GTCTAAATGCAGGGGTCATTCTTC 59.663 45.833 0.00 0.00 33.41 2.87
1353 1389 3.826157 GGGTCATTCTTCCATGTGACAAA 59.174 43.478 12.34 0.00 42.00 2.83
1357 1393 7.147846 GGGTCATTCTTCCATGTGACAAATATT 60.148 37.037 12.34 0.00 42.00 1.28
1358 1394 7.703621 GGTCATTCTTCCATGTGACAAATATTG 59.296 37.037 12.34 0.00 42.00 1.90
1396 1432 4.240096 CCATGCATCTTGTTTTTCTGTCC 58.760 43.478 0.00 0.00 0.00 4.02
1413 1449 9.667107 TTTTCTGTCCAATGTCCTAGTTTATAG 57.333 33.333 0.00 0.00 0.00 1.31
1414 1450 7.973048 TCTGTCCAATGTCCTAGTTTATAGT 57.027 36.000 0.00 0.00 0.00 2.12
1415 1451 9.483489 TTCTGTCCAATGTCCTAGTTTATAGTA 57.517 33.333 0.00 0.00 0.00 1.82
1416 1452 9.656323 TCTGTCCAATGTCCTAGTTTATAGTAT 57.344 33.333 0.00 0.00 0.00 2.12
1469 1505 5.759506 TTTCGCTTCAACCAGAATTTGTA 57.240 34.783 0.00 0.00 35.25 2.41
1598 1635 1.264020 TGCTGTTTAGAAGTTGCTGCG 59.736 47.619 0.00 0.00 0.00 5.18
1602 1639 3.468770 TGTTTAGAAGTTGCTGCGGTTA 58.531 40.909 0.00 0.00 0.00 2.85
1611 1648 3.821033 AGTTGCTGCGGTTAATTTCTCTT 59.179 39.130 0.00 0.00 0.00 2.85
1612 1649 4.083271 AGTTGCTGCGGTTAATTTCTCTTC 60.083 41.667 0.00 0.00 0.00 2.87
1648 1685 9.503427 GTCCACTTTTCAAATATGCTATGTTAC 57.497 33.333 0.00 0.00 0.00 2.50
1666 1703 4.754618 TGTTACTTTGTATGCAGTGGTCAG 59.245 41.667 0.00 0.00 0.00 3.51
1671 1708 1.977854 TGTATGCAGTGGTCAGGAAGT 59.022 47.619 0.00 0.00 0.00 3.01
1672 1709 2.371841 TGTATGCAGTGGTCAGGAAGTT 59.628 45.455 0.00 0.00 0.00 2.66
1673 1710 2.191128 ATGCAGTGGTCAGGAAGTTC 57.809 50.000 0.00 0.00 0.00 3.01
1705 1742 9.412460 TGTGAGGATAATTTCAAAAGAGCATAT 57.588 29.630 0.00 0.00 0.00 1.78
1707 1744 9.631257 TGAGGATAATTTCAAAAGAGCATATGA 57.369 29.630 6.97 0.00 0.00 2.15
1728 1765 5.264395 TGAACATCTATCAGAGACTGGTCA 58.736 41.667 3.51 0.00 37.21 4.02
1740 1777 6.267699 TCAGAGACTGGTCAAACTGAGATAAA 59.732 38.462 15.22 1.46 34.46 1.40
1759 1796 4.877378 AAAAAGCAAATCATCTGGAGCA 57.123 36.364 0.00 0.00 0.00 4.26
1768 1805 2.942804 TCATCTGGAGCAAAAACACCA 58.057 42.857 0.00 0.00 0.00 4.17
1783 1820 4.508551 AACACCAGATGGCAGATCAATA 57.491 40.909 0.00 0.00 39.32 1.90
1787 1824 3.117776 ACCAGATGGCAGATCAATAAGCA 60.118 43.478 0.00 0.00 39.32 3.91
1789 1826 4.523173 CCAGATGGCAGATCAATAAGCATT 59.477 41.667 0.00 0.00 0.00 3.56
1793 1830 6.879993 AGATGGCAGATCAATAAGCATTAGAG 59.120 38.462 0.00 0.00 31.76 2.43
1931 1968 7.286316 GGAATTGTATCCAGAATGTCATTCCTT 59.714 37.037 19.80 2.05 40.13 3.36
1932 1969 8.599624 AATTGTATCCAGAATGTCATTCCTTT 57.400 30.769 19.80 7.34 40.13 3.11
1933 1970 7.395190 TTGTATCCAGAATGTCATTCCTTTG 57.605 36.000 19.80 12.59 40.13 2.77
1934 1971 6.484288 TGTATCCAGAATGTCATTCCTTTGT 58.516 36.000 19.80 7.40 40.13 2.83
1935 1972 7.629157 TGTATCCAGAATGTCATTCCTTTGTA 58.371 34.615 19.80 2.15 40.13 2.41
1936 1973 7.770433 TGTATCCAGAATGTCATTCCTTTGTAG 59.230 37.037 19.80 3.49 40.13 2.74
1937 1974 6.126863 TCCAGAATGTCATTCCTTTGTAGT 57.873 37.500 19.80 0.00 40.13 2.73
1938 1975 6.542821 TCCAGAATGTCATTCCTTTGTAGTT 58.457 36.000 19.80 0.00 40.13 2.24
1939 1976 7.685481 TCCAGAATGTCATTCCTTTGTAGTTA 58.315 34.615 19.80 0.00 40.13 2.24
1940 1977 8.160765 TCCAGAATGTCATTCCTTTGTAGTTAA 58.839 33.333 19.80 0.00 40.13 2.01
1941 1978 8.960591 CCAGAATGTCATTCCTTTGTAGTTAAT 58.039 33.333 19.80 0.00 40.13 1.40
1964 2001 7.864108 ATAGTAGTATTTTTGCTGACATGCA 57.136 32.000 0.00 0.00 41.65 3.96
1977 2014 5.654317 CTGACATGCAGCACTAATAAGAG 57.346 43.478 0.00 0.00 37.90 2.85
1978 2015 3.873361 TGACATGCAGCACTAATAAGAGC 59.127 43.478 0.00 0.00 39.38 4.09
1979 2016 3.873361 GACATGCAGCACTAATAAGAGCA 59.127 43.478 0.00 0.00 41.31 4.26
1980 2017 4.458397 ACATGCAGCACTAATAAGAGCAT 58.542 39.130 0.00 0.00 41.31 3.79
1981 2018 5.614308 ACATGCAGCACTAATAAGAGCATA 58.386 37.500 0.00 0.00 41.31 3.14
1982 2019 6.236409 ACATGCAGCACTAATAAGAGCATAT 58.764 36.000 0.00 0.00 41.31 1.78
1983 2020 6.148976 ACATGCAGCACTAATAAGAGCATATG 59.851 38.462 0.00 0.00 41.31 1.78
1991 2078 8.066595 GCACTAATAAGAGCATATGTTGTCTTG 58.933 37.037 19.32 10.32 38.97 3.02
2023 2110 0.179004 TTCCTGTGCAACCGGTGAAT 60.179 50.000 8.52 0.00 42.47 2.57
2046 2133 3.966979 TGACACCACAATTAGCATGGAT 58.033 40.909 0.00 0.00 36.94 3.41
2164 2251 7.044798 AGGAGAAATTCTGCTGTGAATAGTAC 58.955 38.462 16.21 0.00 43.78 2.73
2263 2365 3.055675 ACTTGTTACTTGGTAGGCGCATA 60.056 43.478 10.83 2.52 0.00 3.14
2300 2402 9.539825 GTTGTCAGAATGTATCAGAATCTATGT 57.460 33.333 0.00 0.00 37.40 2.29
2316 2418 7.888021 AGAATCTATGTTATGTTTTGGTGGTGA 59.112 33.333 0.00 0.00 0.00 4.02
2317 2419 8.593945 AATCTATGTTATGTTTTGGTGGTGAT 57.406 30.769 0.00 0.00 0.00 3.06
2325 2427 4.078537 TGTTTTGGTGGTGATGTATCCTG 58.921 43.478 0.00 0.00 0.00 3.86
2350 2452 8.233868 TGAACAAATCATTTACCGTTCATGTAG 58.766 33.333 9.40 0.00 38.18 2.74
2351 2453 7.083875 ACAAATCATTTACCGTTCATGTAGG 57.916 36.000 0.00 0.00 0.00 3.18
2360 2462 4.312443 ACCGTTCATGTAGGTTAACACAG 58.688 43.478 8.10 0.00 33.96 3.66
2363 2465 4.986034 CGTTCATGTAGGTTAACACAGTCA 59.014 41.667 8.10 0.00 30.75 3.41
2372 2474 3.248363 GGTTAACACAGTCAACGGGTAAC 59.752 47.826 8.10 0.00 0.00 2.50
2376 2478 3.345414 ACACAGTCAACGGGTAACAAAA 58.655 40.909 0.00 0.00 39.74 2.44
2377 2479 3.757493 ACACAGTCAACGGGTAACAAAAA 59.243 39.130 0.00 0.00 39.74 1.94
2419 2521 6.702329 ACTTCATCTCTAAACCAAAGATCGT 58.298 36.000 0.00 0.00 0.00 3.73
2423 2525 3.508793 TCTCTAAACCAAAGATCGTCCGT 59.491 43.478 0.00 0.00 0.00 4.69
2424 2526 4.701651 TCTCTAAACCAAAGATCGTCCGTA 59.298 41.667 0.00 0.00 0.00 4.02
2425 2527 4.737054 TCTAAACCAAAGATCGTCCGTAC 58.263 43.478 0.00 0.00 0.00 3.67
2447 2549 1.581934 TGCAGTTCAAGTCCGACAAG 58.418 50.000 0.40 0.00 0.00 3.16
2481 2583 6.753279 TCTTGATAACTATGTTAAACCCGACG 59.247 38.462 0.00 0.00 0.00 5.12
2483 2585 6.035843 TGATAACTATGTTAAACCCGACGAC 58.964 40.000 0.00 0.00 0.00 4.34
2495 2597 2.260743 GACGACCGGGTTGTCTCC 59.739 66.667 31.65 13.30 42.05 3.71
2499 2601 1.884075 CGACCGGGTTGTCTCCATCA 61.884 60.000 6.32 0.00 32.97 3.07
2500 2602 0.541863 GACCGGGTTGTCTCCATCAT 59.458 55.000 6.32 0.00 32.39 2.45
2504 2606 3.323979 ACCGGGTTGTCTCCATCATATAC 59.676 47.826 6.32 0.00 0.00 1.47
2520 2622 5.523588 TCATATACCCAGATGAGGAGATCC 58.476 45.833 0.00 0.00 29.19 3.36
2582 2684 4.023707 CGGAAATCATATCTTCCACTTGGC 60.024 45.833 7.99 0.00 41.10 4.52
2593 2695 2.826738 ACTTGGCCGTTTGCACGT 60.827 55.556 0.00 0.00 45.62 4.49
2594 2696 1.524165 ACTTGGCCGTTTGCACGTA 60.524 52.632 0.00 0.00 45.62 3.57
2618 2720 6.850752 GAGAATCTATCCCTAGGAGGAAAG 57.149 45.833 11.48 0.28 40.04 2.62
2630 2732 1.578206 GAGGAAAGTTCGGCTGCCAC 61.578 60.000 20.29 10.36 0.00 5.01
2654 2756 5.606348 ACTTTATGGTCTCTGATCCTCAC 57.394 43.478 0.00 0.00 0.00 3.51
2667 2769 1.740297 TCCTCACGAGACTGTAGAGC 58.260 55.000 0.00 0.00 0.00 4.09
2673 2775 0.522286 CGAGACTGTAGAGCTGTGCG 60.522 60.000 0.00 0.00 0.00 5.34
2684 2786 2.094026 AGAGCTGTGCGATGTCATTACA 60.094 45.455 0.00 0.00 40.69 2.41
2726 2828 0.884514 GAAAGGCAGACAAGAAGGCC 59.115 55.000 0.00 0.00 46.77 5.19
2729 2831 3.042481 GGCAGACAAGAAGGCCTTT 57.958 52.632 21.54 2.52 43.09 3.11
2754 2856 4.037446 TGAAAATGGTGAAGGGTCTTTTCG 59.963 41.667 0.00 0.00 36.09 3.46
2789 2891 0.037303 ATGTCAGGGTCTGGTTGCAG 59.963 55.000 0.00 0.00 31.51 4.41
2790 2892 1.053835 TGTCAGGGTCTGGTTGCAGA 61.054 55.000 0.00 0.00 31.51 4.26
2855 2957 6.015095 ACATCTACATGTTTGACTCAGACTCA 60.015 38.462 2.30 0.00 40.66 3.41
2860 2962 5.824624 ACATGTTTGACTCAGACTCAACATT 59.175 36.000 0.00 0.00 0.00 2.71
2863 2965 3.303881 TGACTCAGACTCAACATTCGG 57.696 47.619 0.00 0.00 0.00 4.30
2904 3006 0.250640 AGGTGTGCTGAAGCTGAAGG 60.251 55.000 3.61 0.00 42.66 3.46
2909 3011 2.075338 GTGCTGAAGCTGAAGGAGAAG 58.925 52.381 3.61 0.00 42.66 2.85
2946 3048 3.518634 AAGACTTCATCGAGCTTCCTC 57.481 47.619 0.00 0.00 34.66 3.71
2955 3057 2.174334 GAGCTTCCTCGCATGCAAA 58.826 52.632 19.57 3.85 0.00 3.68
2956 3058 0.098376 GAGCTTCCTCGCATGCAAAG 59.902 55.000 19.57 13.95 0.00 2.77
2964 3066 0.165727 TCGCATGCAAAGCTACAACG 59.834 50.000 19.57 0.00 0.00 4.10
2976 3078 1.732941 CTACAACGGTTGGCATGCTA 58.267 50.000 23.51 9.16 34.12 3.49
2977 3079 2.288666 CTACAACGGTTGGCATGCTAT 58.711 47.619 23.51 3.97 34.12 2.97
3000 3102 6.321848 TCGGGTTTAAGTGGAAAATTCTTC 57.678 37.500 0.00 0.00 0.00 2.87
3010 3112 5.473504 AGTGGAAAATTCTTCGTGCTAACAT 59.526 36.000 0.00 0.00 0.00 2.71
3019 3121 4.159693 TCTTCGTGCTAACATGGACTACAT 59.840 41.667 0.00 0.00 41.57 2.29
3038 3140 8.006298 ACTACATAGATCCAAGAGAAGAACAG 57.994 38.462 0.00 0.00 0.00 3.16
3053 3155 4.103365 AGAACAGCTCGATGTACTTGAG 57.897 45.455 0.00 0.00 38.30 3.02
3070 3172 1.696336 TGAGAAAGCAAGACTGGAGCT 59.304 47.619 0.00 0.00 41.03 4.09
3125 3227 1.633774 TTGGTCTCCTGAGGACAGTC 58.366 55.000 0.00 0.00 42.05 3.51
3127 3229 1.133167 TGGTCTCCTGAGGACAGTCAA 60.133 52.381 0.00 0.00 42.05 3.18
3206 3308 6.602009 TGATTAGTGAGTACTTGCAGCTACTA 59.398 38.462 0.00 0.00 38.36 1.82
3212 3314 4.145807 AGTACTTGCAGCTACTATCGGAT 58.854 43.478 4.04 0.00 0.00 4.18
3239 3341 2.479566 AAGCACTGTATGACTGTGGG 57.520 50.000 15.57 0.00 44.81 4.61
3242 3344 3.107601 AGCACTGTATGACTGTGGGTAT 58.892 45.455 15.57 0.00 44.81 2.73
3287 3389 1.298014 CTTCCCCTGAGCTCCACAC 59.702 63.158 12.15 0.00 0.00 3.82
3291 3393 1.371183 CCCTGAGCTCCACACGAAA 59.629 57.895 12.15 0.00 0.00 3.46
3302 3404 4.451096 GCTCCACACGAAAAACATCTAGAA 59.549 41.667 0.00 0.00 0.00 2.10
3308 3410 6.140737 CACACGAAAAACATCTAGAAAACTGC 59.859 38.462 0.00 0.00 0.00 4.40
3328 3430 2.544277 GCTGTTACGTGTACAGGTCACA 60.544 50.000 25.72 25.72 42.53 3.58
3329 3431 3.305964 CTGTTACGTGTACAGGTCACAG 58.694 50.000 32.14 32.14 41.70 3.66
3338 3440 1.079543 CAGGTCACAGGAGCCTTCG 60.080 63.158 0.00 0.00 42.52 3.79
3393 3495 9.596308 TGTTGATATGTGTATAGTATAGGTGGT 57.404 33.333 0.00 0.00 0.00 4.16
3407 3509 1.277557 AGGTGGTCACTGAAGCATCTC 59.722 52.381 0.93 0.00 32.82 2.75
3416 3518 2.842496 ACTGAAGCATCTCCCATGAAGA 59.158 45.455 0.00 0.00 0.00 2.87
3417 3519 3.204526 CTGAAGCATCTCCCATGAAGAC 58.795 50.000 0.00 0.00 0.00 3.01
3430 3532 1.267121 TGAAGACTAGGGGCACTGAC 58.733 55.000 0.00 0.00 0.00 3.51
3456 3558 4.142204 TGTGCAGAATGTCACATGTTTGTT 60.142 37.500 0.00 0.00 44.12 2.83
3524 3626 9.719355 TTTGTTTCATTCTGTCTATAGCTTGTA 57.281 29.630 0.00 0.00 0.00 2.41
3580 3682 6.778542 TGAATCCAATAATGATAGGTGGGA 57.221 37.500 0.00 0.00 0.00 4.37
3605 3707 9.959749 GAACATTACTTTCCATACTTTGTTTCA 57.040 29.630 0.00 0.00 0.00 2.69
3676 3778 8.791327 AAATGTCCTTGAAAGAATGTTGTTTT 57.209 26.923 0.00 0.00 0.00 2.43
3725 3829 6.293407 GGGTAAGCTTTTTGCCATTTCTTTTC 60.293 38.462 3.20 0.00 44.23 2.29
3765 3869 9.784531 GGATTCCTATGAATGAATTCTACAAGA 57.215 33.333 7.05 1.78 41.30 3.02
3796 3900 1.915266 TGCTGACCCTGAGGACCTG 60.915 63.158 0.00 0.00 36.73 4.00
3805 3909 0.109342 CTGAGGACCTGCCACTTTGT 59.891 55.000 0.00 0.00 40.02 2.83
3847 3951 8.332996 TCTGACGAACTTCTATTAACTGTACT 57.667 34.615 0.00 0.00 0.00 2.73
3855 3959 9.841295 AACTTCTATTAACTGTACTTTGTTGGA 57.159 29.630 0.00 0.00 0.00 3.53
3872 3976 4.283978 TGTTGGACCAATAACTTCTACCGA 59.716 41.667 10.83 0.00 0.00 4.69
3873 3977 4.460948 TGGACCAATAACTTCTACCGAC 57.539 45.455 0.00 0.00 0.00 4.79
3874 3978 4.091549 TGGACCAATAACTTCTACCGACT 58.908 43.478 0.00 0.00 0.00 4.18
3875 3979 5.263599 TGGACCAATAACTTCTACCGACTA 58.736 41.667 0.00 0.00 0.00 2.59
3876 3980 5.126061 TGGACCAATAACTTCTACCGACTAC 59.874 44.000 0.00 0.00 0.00 2.73
3877 3981 5.451103 GGACCAATAACTTCTACCGACTACC 60.451 48.000 0.00 0.00 0.00 3.18
3878 3982 4.096984 ACCAATAACTTCTACCGACTACCG 59.903 45.833 0.00 0.00 38.18 4.02
3937 4041 3.865011 TGTGAAACAGCAAGCTTCAAA 57.135 38.095 0.00 0.00 45.67 2.69
3938 4042 4.389890 TGTGAAACAGCAAGCTTCAAAT 57.610 36.364 0.00 0.00 45.67 2.32
3939 4043 5.512753 TGTGAAACAGCAAGCTTCAAATA 57.487 34.783 0.00 0.00 45.67 1.40
3965 4069 5.356470 GCTTGCCTCATTTTTGTAGAGATCT 59.644 40.000 0.00 0.00 0.00 2.75
3972 4076 8.206867 CCTCATTTTTGTAGAGATCTCATGGTA 58.793 37.037 24.39 5.45 0.00 3.25
3973 4077 9.775854 CTCATTTTTGTAGAGATCTCATGGTAT 57.224 33.333 24.39 5.35 0.00 2.73
3994 4450 1.134401 AGGTCCCAGTATCAACATGCG 60.134 52.381 0.00 0.00 0.00 4.73
4003 4459 5.523552 CCAGTATCAACATGCGACTCAAATA 59.476 40.000 0.00 0.00 0.00 1.40
4014 4470 8.511321 ACATGCGACTCAAATAATTCTAACAAA 58.489 29.630 0.00 0.00 0.00 2.83
4039 4495 6.950842 TGGTATCATGGGCTAGATTATTCAG 58.049 40.000 0.00 0.00 0.00 3.02
4047 4503 5.903010 TGGGCTAGATTATTCAGAGGTTACA 59.097 40.000 0.00 0.00 0.00 2.41
4092 4548 7.838884 TGGATCATCATCAAGTTTTATGCAAA 58.161 30.769 0.00 0.00 0.00 3.68
4112 4568 5.357878 GCAAAGACAATATGTGGAGGAATCA 59.642 40.000 0.00 0.00 0.00 2.57
4113 4569 6.127647 GCAAAGACAATATGTGGAGGAATCAA 60.128 38.462 0.00 0.00 0.00 2.57
4114 4570 7.417116 GCAAAGACAATATGTGGAGGAATCAAT 60.417 37.037 0.00 0.00 0.00 2.57
4115 4571 8.472413 CAAAGACAATATGTGGAGGAATCAATT 58.528 33.333 0.00 0.00 0.00 2.32
4116 4572 9.699410 AAAGACAATATGTGGAGGAATCAATTA 57.301 29.630 0.00 0.00 0.00 1.40
4117 4573 9.872684 AAGACAATATGTGGAGGAATCAATTAT 57.127 29.630 0.00 0.00 0.00 1.28
4118 4574 9.872684 AGACAATATGTGGAGGAATCAATTATT 57.127 29.630 0.00 0.00 0.00 1.40
4119 4575 9.903682 GACAATATGTGGAGGAATCAATTATTG 57.096 33.333 0.00 0.00 32.90 1.90
4120 4576 9.645128 ACAATATGTGGAGGAATCAATTATTGA 57.355 29.630 10.23 10.23 45.01 2.57
4146 4602 8.138365 TGCCAATTATCGTCAAGTTCTAATAC 57.862 34.615 0.00 0.00 0.00 1.89
4162 4618 9.654663 AGTTCTAATACATACAAACCTTCTGAC 57.345 33.333 0.00 0.00 0.00 3.51
4192 4648 1.492176 CCATGCAGTCCACTTATCCCT 59.508 52.381 0.00 0.00 0.00 4.20
4204 4660 3.006752 CACTTATCCCTGATCAGAGCTCC 59.993 52.174 24.62 0.00 0.00 4.70
4245 4701 6.490566 AAGGATTTGACCGTAACACAATAC 57.509 37.500 0.00 0.00 34.73 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.986575 GATTTGGAGACGGCAGCAGC 61.987 60.000 0.00 0.00 41.10 5.25
66 68 8.064336 ACCTAGTAGAAATCAAAGTACGACAT 57.936 34.615 0.00 0.00 0.00 3.06
77 79 6.182627 TGACTTACGGACCTAGTAGAAATCA 58.817 40.000 0.00 0.00 0.00 2.57
88 90 1.623811 ACAAGCATGACTTACGGACCT 59.376 47.619 0.00 0.00 36.04 3.85
89 91 2.000447 GACAAGCATGACTTACGGACC 59.000 52.381 0.00 0.00 36.04 4.46
90 92 1.654105 CGACAAGCATGACTTACGGAC 59.346 52.381 0.00 0.00 36.04 4.79
93 95 0.999406 CCCGACAAGCATGACTTACG 59.001 55.000 0.00 8.78 36.04 3.18
95 97 2.301870 AGAACCCGACAAGCATGACTTA 59.698 45.455 0.00 0.00 36.04 2.24
106 108 3.514645 GCTACGAAAATAGAACCCGACA 58.485 45.455 0.00 0.00 0.00 4.35
110 112 2.538861 GAGCGCTACGAAAATAGAACCC 59.461 50.000 11.50 0.00 0.00 4.11
111 113 3.445857 AGAGCGCTACGAAAATAGAACC 58.554 45.455 11.50 0.00 0.00 3.62
146 148 1.166129 TCTCTCTGCGTGACCAGTAC 58.834 55.000 1.96 0.00 34.47 2.73
147 149 1.745653 CATCTCTCTGCGTGACCAGTA 59.254 52.381 1.96 0.00 34.47 2.74
148 150 0.529833 CATCTCTCTGCGTGACCAGT 59.470 55.000 1.96 0.00 34.47 4.00
149 151 0.813821 TCATCTCTCTGCGTGACCAG 59.186 55.000 0.00 0.00 0.00 4.00
150 152 0.813821 CTCATCTCTCTGCGTGACCA 59.186 55.000 0.00 0.00 0.00 4.02
151 153 1.098869 TCTCATCTCTCTGCGTGACC 58.901 55.000 0.00 0.00 0.00 4.02
152 154 2.525055 GTTCTCATCTCTCTGCGTGAC 58.475 52.381 0.00 0.00 0.00 3.67
153 155 1.474478 GGTTCTCATCTCTCTGCGTGA 59.526 52.381 0.00 0.00 0.00 4.35
154 156 1.476085 AGGTTCTCATCTCTCTGCGTG 59.524 52.381 0.00 0.00 0.00 5.34
155 157 1.476085 CAGGTTCTCATCTCTCTGCGT 59.524 52.381 0.00 0.00 0.00 5.24
156 158 1.476085 ACAGGTTCTCATCTCTCTGCG 59.524 52.381 0.00 0.00 0.00 5.18
157 159 4.727507 TTACAGGTTCTCATCTCTCTGC 57.272 45.455 0.00 0.00 0.00 4.26
158 160 5.186797 AGGTTTACAGGTTCTCATCTCTCTG 59.813 44.000 0.00 0.00 0.00 3.35
159 161 5.186797 CAGGTTTACAGGTTCTCATCTCTCT 59.813 44.000 0.00 0.00 0.00 3.10
160 162 5.046950 ACAGGTTTACAGGTTCTCATCTCTC 60.047 44.000 0.00 0.00 0.00 3.20
161 163 4.841246 ACAGGTTTACAGGTTCTCATCTCT 59.159 41.667 0.00 0.00 0.00 3.10
162 164 5.153950 ACAGGTTTACAGGTTCTCATCTC 57.846 43.478 0.00 0.00 0.00 2.75
163 165 6.440647 TCATACAGGTTTACAGGTTCTCATCT 59.559 38.462 0.00 0.00 0.00 2.90
164 166 6.640518 TCATACAGGTTTACAGGTTCTCATC 58.359 40.000 0.00 0.00 0.00 2.92
165 167 6.213600 ACTCATACAGGTTTACAGGTTCTCAT 59.786 38.462 0.00 0.00 0.00 2.90
166 168 5.542635 ACTCATACAGGTTTACAGGTTCTCA 59.457 40.000 0.00 0.00 0.00 3.27
167 169 6.038997 ACTCATACAGGTTTACAGGTTCTC 57.961 41.667 0.00 0.00 0.00 2.87
168 170 6.435292 AACTCATACAGGTTTACAGGTTCT 57.565 37.500 0.00 0.00 0.00 3.01
169 171 6.708949 TCAAACTCATACAGGTTTACAGGTTC 59.291 38.462 0.00 0.00 34.44 3.62
248 251 8.798859 AGAATCAGTAGCAAAACATAGACATT 57.201 30.769 0.00 0.00 0.00 2.71
257 260 3.371285 GGGTCGAGAATCAGTAGCAAAAC 59.629 47.826 0.00 0.00 33.17 2.43
264 267 2.510382 AGGAGAGGGTCGAGAATCAGTA 59.490 50.000 0.00 0.00 33.17 2.74
271 274 1.303615 GGACAGGAGAGGGTCGAGA 59.696 63.158 0.00 0.00 34.87 4.04
342 375 6.035975 CAGTATACTGTCAATTTGATCACGCA 59.964 38.462 22.48 0.00 39.09 5.24
343 376 6.414079 CAGTATACTGTCAATTTGATCACGC 58.586 40.000 22.48 0.00 39.09 5.34
344 377 6.256539 AGCAGTATACTGTCAATTTGATCACG 59.743 38.462 28.95 3.49 45.45 4.35
345 378 7.404985 CAGCAGTATACTGTCAATTTGATCAC 58.595 38.462 28.95 11.29 45.45 3.06
346 379 6.037500 GCAGCAGTATACTGTCAATTTGATCA 59.962 38.462 28.95 0.00 45.45 2.92
347 380 6.425504 GCAGCAGTATACTGTCAATTTGATC 58.574 40.000 28.95 11.91 45.45 2.92
348 381 5.297776 GGCAGCAGTATACTGTCAATTTGAT 59.702 40.000 28.95 2.37 45.45 2.57
349 382 4.635765 GGCAGCAGTATACTGTCAATTTGA 59.364 41.667 28.95 0.00 45.45 2.69
350 383 4.637534 AGGCAGCAGTATACTGTCAATTTG 59.362 41.667 28.95 18.92 42.29 2.32
351 384 4.848357 AGGCAGCAGTATACTGTCAATTT 58.152 39.130 28.95 11.87 42.29 1.82
352 385 4.494091 AGGCAGCAGTATACTGTCAATT 57.506 40.909 28.95 13.21 42.29 2.32
353 386 4.194640 CAAGGCAGCAGTATACTGTCAAT 58.805 43.478 28.95 13.55 42.29 2.57
354 387 3.599343 CAAGGCAGCAGTATACTGTCAA 58.401 45.455 28.95 0.00 42.29 3.18
355 388 2.093500 CCAAGGCAGCAGTATACTGTCA 60.093 50.000 28.95 0.00 42.29 3.58
356 389 2.168521 TCCAAGGCAGCAGTATACTGTC 59.831 50.000 28.95 21.72 45.45 3.51
357 390 2.169352 CTCCAAGGCAGCAGTATACTGT 59.831 50.000 28.95 15.95 45.45 3.55
358 391 2.432146 TCTCCAAGGCAGCAGTATACTG 59.568 50.000 25.68 25.68 46.40 2.74
359 392 2.697751 CTCTCCAAGGCAGCAGTATACT 59.302 50.000 0.00 0.00 0.00 2.12
360 393 2.804933 GCTCTCCAAGGCAGCAGTATAC 60.805 54.545 0.00 0.00 33.06 1.47
361 394 1.414181 GCTCTCCAAGGCAGCAGTATA 59.586 52.381 0.00 0.00 33.06 1.47
362 395 0.179936 GCTCTCCAAGGCAGCAGTAT 59.820 55.000 0.00 0.00 33.06 2.12
363 396 1.599047 GCTCTCCAAGGCAGCAGTA 59.401 57.895 0.00 0.00 33.06 2.74
364 397 2.350514 GCTCTCCAAGGCAGCAGT 59.649 61.111 0.00 0.00 33.06 4.40
365 398 2.818714 CGCTCTCCAAGGCAGCAG 60.819 66.667 9.61 0.00 32.27 4.24
366 399 4.399395 CCGCTCTCCAAGGCAGCA 62.399 66.667 9.61 0.00 32.27 4.41
367 400 4.087892 TCCGCTCTCCAAGGCAGC 62.088 66.667 0.00 1.03 0.00 5.25
368 401 2.186384 CTCCGCTCTCCAAGGCAG 59.814 66.667 0.00 0.00 0.00 4.85
369 402 3.393970 CCTCCGCTCTCCAAGGCA 61.394 66.667 0.00 0.00 0.00 4.75
399 432 3.230134 TGAATCCACCCCAAAGAACTTG 58.770 45.455 0.00 0.00 34.52 3.16
405 438 0.409484 ACCCTGAATCCACCCCAAAG 59.591 55.000 0.00 0.00 0.00 2.77
406 439 0.114168 CACCCTGAATCCACCCCAAA 59.886 55.000 0.00 0.00 0.00 3.28
412 445 3.452627 AGATGACTACACCCTGAATCCAC 59.547 47.826 0.00 0.00 0.00 4.02
435 468 9.168451 TGGTTAACGTCATATGTTGATACAATT 57.832 29.630 1.90 0.00 37.91 2.32
443 476 6.415798 TCACATGGTTAACGTCATATGTTG 57.584 37.500 1.90 0.00 0.00 3.33
450 483 3.755112 TTCCTCACATGGTTAACGTCA 57.245 42.857 0.00 0.00 0.00 4.35
461 494 4.340950 ACCGTGAAACAATTTTCCTCACAT 59.659 37.500 0.00 0.00 40.55 3.21
462 495 3.697045 ACCGTGAAACAATTTTCCTCACA 59.303 39.130 0.00 0.00 40.55 3.58
463 496 4.041723 CACCGTGAAACAATTTTCCTCAC 58.958 43.478 0.00 0.00 40.55 3.51
465 498 3.049912 GCACCGTGAAACAATTTTCCTC 58.950 45.455 1.65 0.00 40.55 3.71
466 499 2.428890 TGCACCGTGAAACAATTTTCCT 59.571 40.909 1.65 0.00 40.55 3.36
467 500 2.815478 TGCACCGTGAAACAATTTTCC 58.185 42.857 1.65 0.00 40.55 3.13
468 501 5.196825 CAAATGCACCGTGAAACAATTTTC 58.803 37.500 1.65 0.00 41.49 2.29
469 502 4.495514 GCAAATGCACCGTGAAACAATTTT 60.496 37.500 1.65 0.00 41.59 1.82
470 503 3.002144 GCAAATGCACCGTGAAACAATTT 59.998 39.130 1.65 0.00 41.59 1.82
471 504 2.543430 GCAAATGCACCGTGAAACAATT 59.457 40.909 1.65 0.00 41.59 2.32
472 505 2.134346 GCAAATGCACCGTGAAACAAT 58.866 42.857 1.65 0.00 41.59 2.71
473 506 1.135915 AGCAAATGCACCGTGAAACAA 59.864 42.857 8.28 0.00 45.16 2.83
474 507 0.743688 AGCAAATGCACCGTGAAACA 59.256 45.000 8.28 0.00 45.16 2.83
475 508 1.130955 CAGCAAATGCACCGTGAAAC 58.869 50.000 8.28 0.00 45.16 2.78
476 509 0.743688 ACAGCAAATGCACCGTGAAA 59.256 45.000 8.28 0.00 45.16 2.69
477 510 0.743688 AACAGCAAATGCACCGTGAA 59.256 45.000 8.28 0.00 45.16 3.18
478 511 0.743688 AAACAGCAAATGCACCGTGA 59.256 45.000 8.28 0.00 45.16 4.35
479 512 1.130955 GAAACAGCAAATGCACCGTG 58.869 50.000 8.28 0.00 45.16 4.94
480 513 0.743688 TGAAACAGCAAATGCACCGT 59.256 45.000 8.28 0.00 45.16 4.83
481 514 1.269206 ACTGAAACAGCAAATGCACCG 60.269 47.619 8.28 0.00 45.16 4.94
482 515 2.035066 AGACTGAAACAGCAAATGCACC 59.965 45.455 8.28 0.00 45.16 5.01
483 516 3.360249 AGACTGAAACAGCAAATGCAC 57.640 42.857 8.28 0.00 45.16 4.57
484 517 4.389890 AAAGACTGAAACAGCAAATGCA 57.610 36.364 8.28 0.00 45.16 3.96
485 518 5.723492 AAAAAGACTGAAACAGCAAATGC 57.277 34.783 0.00 0.00 42.49 3.56
486 519 6.980397 AGGTAAAAAGACTGAAACAGCAAATG 59.020 34.615 0.00 0.00 34.37 2.32
487 520 6.980397 CAGGTAAAAAGACTGAAACAGCAAAT 59.020 34.615 0.00 0.00 34.37 2.32
488 521 6.071616 ACAGGTAAAAAGACTGAAACAGCAAA 60.072 34.615 0.00 0.00 34.37 3.68
491 524 5.500645 ACAGGTAAAAAGACTGAAACAGC 57.499 39.130 0.00 0.00 34.37 4.40
577 610 0.250901 TGCAGCTCCACCCTTTTCTC 60.251 55.000 0.00 0.00 0.00 2.87
636 669 0.749454 CCAGCAGGAATTAAGCGCCT 60.749 55.000 2.29 0.00 36.89 5.52
638 671 0.748005 TCCCAGCAGGAATTAAGCGC 60.748 55.000 0.00 0.00 43.78 5.92
664 697 6.365247 CAGCAGATGCAATATAAAAGCAATCC 59.635 38.462 7.68 0.00 45.16 3.01
703 736 4.726416 AGCTATGCAAGTGAAACGAATTG 58.274 39.130 0.00 0.00 45.86 2.32
715 748 5.625251 CATTAATTAGGCGAGCTATGCAAG 58.375 41.667 12.05 0.00 0.00 4.01
718 751 3.436704 TGCATTAATTAGGCGAGCTATGC 59.563 43.478 7.30 7.30 38.04 3.14
720 753 6.824305 AAATGCATTAATTAGGCGAGCTAT 57.176 33.333 13.39 0.00 0.00 2.97
758 791 9.338622 GGTTTGTAGATAACCTAGCATAACAAT 57.661 33.333 0.00 0.00 41.46 2.71
776 809 6.472887 TCCACCTCTCATAAAAGGTTTGTAG 58.527 40.000 0.00 0.00 43.45 2.74
789 822 2.277008 ACCAGGATTCCACCTCTCAT 57.723 50.000 5.29 0.00 38.32 2.90
803 836 8.840321 CATATATGTAACTTTGAGGAAACCAGG 58.160 37.037 4.43 0.00 0.00 4.45
812 845 6.128715 CCGAGCAGCATATATGTAACTTTGAG 60.129 42.308 14.14 0.00 0.00 3.02
824 857 2.456577 TGATAGCCCGAGCAGCATATA 58.543 47.619 0.00 0.00 43.56 0.86
830 863 1.202568 TCATGTTGATAGCCCGAGCAG 60.203 52.381 0.00 0.00 43.56 4.24
848 881 4.718774 ACCTGGATATCTTGAAGCTCTTCA 59.281 41.667 8.14 8.14 46.72 3.02
849 882 5.055812 CACCTGGATATCTTGAAGCTCTTC 58.944 45.833 0.00 2.80 39.91 2.87
852 885 3.137533 GCACCTGGATATCTTGAAGCTC 58.862 50.000 0.00 0.00 0.00 4.09
881 914 1.528129 TTTGTGTGTCTGTGTGCACA 58.472 45.000 17.42 17.42 42.50 4.57
889 922 9.507280 CCTAAAGCAAATATATTTGTGTGTCTG 57.493 33.333 29.73 17.69 46.63 3.51
974 1007 4.002982 CTGTATGCAGCAGTAAAAGTGGA 58.997 43.478 0.00 0.00 35.77 4.02
1040 1073 1.373570 AGCATGAGTAGCTTTTCGGC 58.626 50.000 0.00 0.00 39.87 5.54
1109 1142 1.220529 TGCAGCTCAAACTCGTCAAG 58.779 50.000 0.00 0.00 0.00 3.02
1112 1145 1.800586 TGAATGCAGCTCAAACTCGTC 59.199 47.619 0.00 0.00 0.00 4.20
1115 1148 4.698583 ATTCTGAATGCAGCTCAAACTC 57.301 40.909 1.31 0.00 42.01 3.01
1126 1159 5.697826 GCCTCAGCTATAAATTCTGAATGC 58.302 41.667 3.22 2.76 36.54 3.56
1171 1204 3.859961 CACGTTCATCAGCTTTCTCGTAT 59.140 43.478 0.00 0.00 0.00 3.06
1175 1208 2.417719 ACCACGTTCATCAGCTTTCTC 58.582 47.619 0.00 0.00 0.00 2.87
1190 1223 3.868661 TGATTCACGATTGGAATACCACG 59.131 43.478 0.00 0.00 46.80 4.94
1198 1231 3.073678 CCAACTGTGATTCACGATTGGA 58.926 45.455 30.21 8.48 46.12 3.53
1201 1234 2.783135 AGCCAACTGTGATTCACGATT 58.217 42.857 11.97 6.00 37.14 3.34
1204 1237 2.662791 CGAAAGCCAACTGTGATTCACG 60.663 50.000 11.97 9.18 37.14 4.35
1213 1246 0.535102 ACCTGTCCGAAAGCCAACTG 60.535 55.000 0.00 0.00 0.00 3.16
1222 1255 3.272574 AGATACGAGTACCTGTCCGAA 57.727 47.619 0.00 0.00 0.00 4.30
1224 1257 4.125703 AGTTAGATACGAGTACCTGTCCG 58.874 47.826 0.00 0.00 0.00 4.79
1225 1258 5.179182 GCTAGTTAGATACGAGTACCTGTCC 59.821 48.000 0.00 0.00 32.61 4.02
1275 1308 9.017509 TGTTTCAGAGAAAATATTCATGAAGCT 57.982 29.630 14.54 0.22 41.00 3.74
1276 1309 9.798994 ATGTTTCAGAGAAAATATTCATGAAGC 57.201 29.630 14.54 12.24 41.00 3.86
1278 1311 9.577110 GCATGTTTCAGAGAAAATATTCATGAA 57.423 29.630 11.26 11.26 39.62 2.57
1320 1356 4.526970 GAAGAATGACCCCTGCATTTAGA 58.473 43.478 0.00 0.00 36.19 2.10
1342 1378 5.123186 ACGGTACACAATATTTGTCACATGG 59.877 40.000 0.00 0.00 43.23 3.66
1353 1389 7.011669 GCATGGTTTACTTACGGTACACAATAT 59.988 37.037 0.00 0.00 33.96 1.28
1357 1393 3.995705 GCATGGTTTACTTACGGTACACA 59.004 43.478 0.00 0.00 33.96 3.72
1358 1394 3.995705 TGCATGGTTTACTTACGGTACAC 59.004 43.478 0.00 0.00 32.15 2.90
1415 1451 9.705103 TGATTCATCTTTCAGGGAATAAGAAAT 57.295 29.630 0.00 0.00 32.20 2.17
1416 1452 9.532494 TTGATTCATCTTTCAGGGAATAAGAAA 57.468 29.630 0.00 0.00 32.20 2.52
1417 1453 9.705103 ATTGATTCATCTTTCAGGGAATAAGAA 57.295 29.630 0.00 0.00 32.20 2.52
1469 1505 2.617774 GAGGGTCGTATTCGTAGAAGCT 59.382 50.000 0.00 0.00 45.90 3.74
1598 1635 4.589908 TCCAGCAGGAAGAGAAATTAACC 58.410 43.478 0.00 0.00 42.23 2.85
1648 1685 3.057969 TCCTGACCACTGCATACAAAG 57.942 47.619 0.00 0.00 0.00 2.77
1666 1703 2.783135 TCCTCACATTGCTGAACTTCC 58.217 47.619 0.00 0.00 0.00 3.46
1671 1708 7.465353 TTGAAATTATCCTCACATTGCTGAA 57.535 32.000 0.00 0.00 0.00 3.02
1672 1709 7.465353 TTTGAAATTATCCTCACATTGCTGA 57.535 32.000 0.00 0.00 0.00 4.26
1673 1710 8.030692 TCTTTTGAAATTATCCTCACATTGCTG 58.969 33.333 0.00 0.00 0.00 4.41
1705 1742 5.264395 TGACCAGTCTCTGATAGATGTTCA 58.736 41.667 0.00 0.00 36.36 3.18
1707 1744 6.212388 AGTTTGACCAGTCTCTGATAGATGTT 59.788 38.462 0.00 0.00 36.36 2.71
1708 1745 5.719085 AGTTTGACCAGTCTCTGATAGATGT 59.281 40.000 0.00 0.00 36.36 3.06
1728 1765 9.635520 CAGATGATTTGCTTTTTATCTCAGTTT 57.364 29.630 0.00 0.00 0.00 2.66
1740 1777 4.877378 TTTGCTCCAGATGATTTGCTTT 57.123 36.364 0.00 0.00 0.00 3.51
1759 1796 3.499338 TGATCTGCCATCTGGTGTTTTT 58.501 40.909 0.00 0.00 37.57 1.94
1768 1805 6.776744 TCTAATGCTTATTGATCTGCCATCT 58.223 36.000 0.00 0.00 0.00 2.90
1783 1820 4.508662 GTTACCTGTCTGCTCTAATGCTT 58.491 43.478 0.00 0.00 0.00 3.91
1787 1824 5.700402 AATGGTTACCTGTCTGCTCTAAT 57.300 39.130 2.07 0.00 0.00 1.73
1789 1826 5.499004 AAAATGGTTACCTGTCTGCTCTA 57.501 39.130 2.07 0.00 0.00 2.43
1938 1975 9.389755 TGCATGTCAGCAAAAATACTACTATTA 57.610 29.630 0.00 0.00 42.46 0.98
1939 1976 8.279970 TGCATGTCAGCAAAAATACTACTATT 57.720 30.769 0.00 0.00 42.46 1.73
1940 1977 7.864108 TGCATGTCAGCAAAAATACTACTAT 57.136 32.000 0.00 0.00 42.46 2.12
1941 1978 7.307493 CTGCATGTCAGCAAAAATACTACTA 57.693 36.000 4.55 0.00 45.13 1.82
1942 1979 6.187125 CTGCATGTCAGCAAAAATACTACT 57.813 37.500 4.55 0.00 45.13 2.57
1955 1992 4.025061 GCTCTTATTAGTGCTGCATGTCAG 60.025 45.833 5.27 11.40 45.62 3.51
1956 1993 3.873361 GCTCTTATTAGTGCTGCATGTCA 59.127 43.478 5.27 0.00 37.78 3.58
1957 1994 3.873361 TGCTCTTATTAGTGCTGCATGTC 59.127 43.478 5.27 0.00 40.62 3.06
1958 1995 3.877559 TGCTCTTATTAGTGCTGCATGT 58.122 40.909 5.27 0.00 40.62 3.21
1959 1996 6.148976 ACATATGCTCTTATTAGTGCTGCATG 59.851 38.462 5.27 9.17 40.62 4.06
1960 1997 6.236409 ACATATGCTCTTATTAGTGCTGCAT 58.764 36.000 5.27 0.00 40.62 3.96
1961 1998 5.614308 ACATATGCTCTTATTAGTGCTGCA 58.386 37.500 1.58 0.00 40.62 4.41
1962 1999 6.017605 ACAACATATGCTCTTATTAGTGCTGC 60.018 38.462 1.58 0.00 40.62 5.25
1963 2000 7.440556 AGACAACATATGCTCTTATTAGTGCTG 59.559 37.037 1.58 0.87 40.62 4.41
1964 2001 7.504403 AGACAACATATGCTCTTATTAGTGCT 58.496 34.615 1.58 0.00 40.62 4.40
1965 2002 7.721286 AGACAACATATGCTCTTATTAGTGC 57.279 36.000 1.58 0.00 40.45 4.40
1966 2003 9.102757 ACAAGACAACATATGCTCTTATTAGTG 57.897 33.333 1.58 0.00 32.07 2.74
1967 2004 9.319143 GACAAGACAACATATGCTCTTATTAGT 57.681 33.333 1.58 1.65 32.07 2.24
1968 2005 8.768955 GGACAAGACAACATATGCTCTTATTAG 58.231 37.037 1.58 0.00 32.07 1.73
1969 2006 8.486210 AGGACAAGACAACATATGCTCTTATTA 58.514 33.333 1.58 0.00 32.07 0.98
1970 2007 7.341805 AGGACAAGACAACATATGCTCTTATT 58.658 34.615 1.58 0.00 32.07 1.40
1971 2008 6.893583 AGGACAAGACAACATATGCTCTTAT 58.106 36.000 1.58 0.00 32.07 1.73
1972 2009 6.299805 AGGACAAGACAACATATGCTCTTA 57.700 37.500 1.58 0.00 32.07 2.10
1973 2010 5.171339 AGGACAAGACAACATATGCTCTT 57.829 39.130 1.58 4.02 32.90 2.85
1974 2011 4.833478 AGGACAAGACAACATATGCTCT 57.167 40.909 1.58 0.00 0.00 4.09
1975 2012 5.886960 AAAGGACAAGACAACATATGCTC 57.113 39.130 1.58 0.00 0.00 4.26
1976 2013 5.536161 ACAAAAGGACAAGACAACATATGCT 59.464 36.000 1.58 0.00 0.00 3.79
1977 2014 5.772521 ACAAAAGGACAAGACAACATATGC 58.227 37.500 1.58 0.00 0.00 3.14
1978 2015 6.144402 GCAACAAAAGGACAAGACAACATATG 59.856 38.462 0.00 0.00 0.00 1.78
1979 2016 6.040842 AGCAACAAAAGGACAAGACAACATAT 59.959 34.615 0.00 0.00 0.00 1.78
1980 2017 5.359576 AGCAACAAAAGGACAAGACAACATA 59.640 36.000 0.00 0.00 0.00 2.29
1981 2018 4.160252 AGCAACAAAAGGACAAGACAACAT 59.840 37.500 0.00 0.00 0.00 2.71
1982 2019 3.509575 AGCAACAAAAGGACAAGACAACA 59.490 39.130 0.00 0.00 0.00 3.33
1983 2020 4.110036 AGCAACAAAAGGACAAGACAAC 57.890 40.909 0.00 0.00 0.00 3.32
1991 2078 2.799562 GCACAGGAAGCAACAAAAGGAC 60.800 50.000 0.00 0.00 0.00 3.85
2023 2110 5.109500 TCCATGCTAATTGTGGTGTCATA 57.891 39.130 0.00 0.00 34.61 2.15
2300 2402 6.376864 CAGGATACATCACCACCAAAACATAA 59.623 38.462 0.00 0.00 41.41 1.90
2316 2418 7.556275 ACGGTAAATGATTTGTTCAGGATACAT 59.444 33.333 0.00 0.00 37.89 2.29
2317 2419 6.882140 ACGGTAAATGATTTGTTCAGGATACA 59.118 34.615 0.00 0.00 37.89 2.29
2325 2427 7.696453 CCTACATGAACGGTAAATGATTTGTTC 59.304 37.037 0.00 10.79 36.98 3.18
2350 2452 1.957668 ACCCGTTGACTGTGTTAACC 58.042 50.000 2.48 0.00 29.94 2.85
2351 2453 3.870419 TGTTACCCGTTGACTGTGTTAAC 59.130 43.478 0.00 0.00 0.00 2.01
2360 2462 3.065648 TCAGCTTTTTGTTACCCGTTGAC 59.934 43.478 0.00 0.00 0.00 3.18
2363 2465 2.621526 CCTCAGCTTTTTGTTACCCGTT 59.378 45.455 0.00 0.00 0.00 4.44
2372 2474 4.122143 TGTTTCAACCCTCAGCTTTTTG 57.878 40.909 0.00 0.00 0.00 2.44
2376 2478 3.365472 AGTTTGTTTCAACCCTCAGCTT 58.635 40.909 0.00 0.00 0.00 3.74
2377 2479 3.018423 AGTTTGTTTCAACCCTCAGCT 57.982 42.857 0.00 0.00 0.00 4.24
2495 2597 6.041865 GGATCTCCTCATCTGGGTATATGATG 59.958 46.154 0.00 0.00 38.97 3.07
2499 2601 4.551979 AGGGATCTCCTCATCTGGGTATAT 59.448 45.833 0.00 0.00 44.06 0.86
2500 2602 3.932562 AGGGATCTCCTCATCTGGGTATA 59.067 47.826 0.00 0.00 44.06 1.47
2504 2606 3.888772 AGGGATCTCCTCATCTGGG 57.111 57.895 0.00 0.00 44.06 4.45
2520 2622 0.175989 GGAGCAGTTAAGTCCCGAGG 59.824 60.000 0.00 0.00 0.00 4.63
2582 2684 2.607187 AGATTCTCTACGTGCAAACGG 58.393 47.619 0.00 0.00 37.45 4.44
2593 2695 7.298552 ACTTTCCTCCTAGGGATAGATTCTCTA 59.701 40.741 9.46 0.00 36.28 2.43
2594 2696 6.105589 ACTTTCCTCCTAGGGATAGATTCTCT 59.894 42.308 9.46 0.00 39.13 3.10
2618 2720 0.948678 TAAAGTTGTGGCAGCCGAAC 59.051 50.000 15.56 15.56 0.00 3.95
2630 2732 5.982356 TGAGGATCAGAGACCATAAAGTTG 58.018 41.667 0.00 0.00 42.56 3.16
2654 2756 0.522286 CGCACAGCTCTACAGTCTCG 60.522 60.000 0.00 0.00 0.00 4.04
2667 2769 2.862536 CCTCTGTAATGACATCGCACAG 59.137 50.000 14.31 14.31 38.34 3.66
2673 2775 4.142071 TGTCAGCTCCTCTGTAATGACATC 60.142 45.833 1.92 0.00 41.37 3.06
2684 2786 1.265236 CTTCAGGTGTCAGCTCCTCT 58.735 55.000 0.36 0.00 36.54 3.69
2726 2828 4.342092 AGACCCTTCACCATTTTCACAAAG 59.658 41.667 0.00 0.00 0.00 2.77
2729 2831 3.593442 AGACCCTTCACCATTTTCACA 57.407 42.857 0.00 0.00 0.00 3.58
2754 2856 0.324645 ACATCCCTTGGCACCCATTC 60.325 55.000 0.00 0.00 31.53 2.67
2789 2891 1.064463 TCCCAGCCATCCTCAATGTTC 60.064 52.381 0.00 0.00 33.13 3.18
2790 2892 1.002069 TCCCAGCCATCCTCAATGTT 58.998 50.000 0.00 0.00 33.13 2.71
2855 2957 1.812571 GTGATGAACTGGCCGAATGTT 59.187 47.619 0.00 0.02 0.00 2.71
2860 2962 1.202758 ACAAAGTGATGAACTGGCCGA 60.203 47.619 0.00 0.00 39.81 5.54
2863 2965 3.146066 TGGTACAAAGTGATGAACTGGC 58.854 45.455 0.00 0.00 39.81 4.85
2904 3006 3.432378 TGTACTTCTGACCTCCCTTCTC 58.568 50.000 0.00 0.00 0.00 2.87
2909 3011 3.579151 AGTCTTTGTACTTCTGACCTCCC 59.421 47.826 0.00 0.00 0.00 4.30
2946 3048 0.794229 CCGTTGTAGCTTTGCATGCG 60.794 55.000 14.09 0.00 35.28 4.73
2955 3057 1.586154 GCATGCCAACCGTTGTAGCT 61.586 55.000 6.36 0.00 0.00 3.32
2956 3058 1.154035 GCATGCCAACCGTTGTAGC 60.154 57.895 6.36 7.85 0.00 3.58
2964 3066 0.751643 AACCCGATAGCATGCCAACC 60.752 55.000 15.66 0.20 0.00 3.77
2976 3078 6.349033 CGAAGAATTTTCCACTTAAACCCGAT 60.349 38.462 0.00 0.00 0.00 4.18
2977 3079 5.049267 CGAAGAATTTTCCACTTAAACCCGA 60.049 40.000 0.00 0.00 0.00 5.14
3000 3102 5.183014 TCTATGTAGTCCATGTTAGCACG 57.817 43.478 0.00 0.00 34.86 5.34
3010 3112 6.673583 TCTTCTCTTGGATCTATGTAGTCCA 58.326 40.000 0.00 7.05 40.13 4.02
3019 3121 4.097135 CGAGCTGTTCTTCTCTTGGATCTA 59.903 45.833 0.00 0.00 0.00 1.98
3038 3140 3.254060 TGCTTTCTCAAGTACATCGAGC 58.746 45.455 0.00 0.00 31.86 5.03
3053 3155 2.175878 TCAGCTCCAGTCTTGCTTTC 57.824 50.000 0.00 0.00 34.51 2.62
3070 3172 3.909732 GAGGGATCCTTCTCTCTCTTCA 58.090 50.000 16.41 0.00 44.80 3.02
3127 3229 1.066143 CAGGGTGCGACCAAGTATTCT 60.066 52.381 7.49 0.00 41.02 2.40
3206 3308 1.556911 AGTGCTTTCTGGACATCCGAT 59.443 47.619 0.00 0.00 39.64 4.18
3212 3314 3.324846 AGTCATACAGTGCTTTCTGGACA 59.675 43.478 0.00 0.00 39.64 4.02
3239 3341 6.107901 AGGCTCAGATTCTGTCCATAATAC 57.892 41.667 21.17 4.49 32.61 1.89
3242 3344 4.033009 TGAGGCTCAGATTCTGTCCATAA 58.967 43.478 14.43 9.74 32.61 1.90
3287 3389 6.430451 ACAGCAGTTTTCTAGATGTTTTTCG 58.570 36.000 0.00 0.00 28.88 3.46
3291 3393 6.482308 ACGTAACAGCAGTTTTCTAGATGTTT 59.518 34.615 10.08 0.00 38.00 2.83
3302 3404 3.128349 CCTGTACACGTAACAGCAGTTT 58.872 45.455 19.72 0.00 42.47 2.66
3308 3410 3.305964 CTGTGACCTGTACACGTAACAG 58.694 50.000 21.16 21.16 43.26 3.16
3328 3430 0.605589 CAGAACACTCGAAGGCTCCT 59.394 55.000 0.00 0.00 0.00 3.69
3329 3431 0.603569 TCAGAACACTCGAAGGCTCC 59.396 55.000 0.00 0.00 0.00 4.70
3338 3440 2.802816 ACGTGCTTCATTCAGAACACTC 59.197 45.455 0.00 0.00 36.74 3.51
3393 3495 2.190538 TCATGGGAGATGCTTCAGTGA 58.809 47.619 2.07 0.00 0.00 3.41
3407 3509 0.181350 GTGCCCCTAGTCTTCATGGG 59.819 60.000 0.00 0.00 39.37 4.00
3416 3518 1.119574 ACAACGTCAGTGCCCCTAGT 61.120 55.000 0.00 0.00 0.00 2.57
3417 3519 0.670546 CACAACGTCAGTGCCCCTAG 60.671 60.000 7.98 0.00 0.00 3.02
3430 3532 2.031769 ACATGTGACATTCTGCACAACG 60.032 45.455 0.00 0.00 46.74 4.10
3437 3539 5.521010 AGCAAAACAAACATGTGACATTCTG 59.479 36.000 0.00 0.00 0.00 3.02
3524 3626 9.987272 CTCTTTTTCCTTTCCTAATTGTTCATT 57.013 29.630 0.00 0.00 0.00 2.57
3547 3649 7.398289 TCATTATTGGATTCATTCCCTCTCT 57.602 36.000 0.00 0.00 44.77 3.10
3564 3666 9.936329 AAAGTAATGTTCCCACCTATCATTATT 57.064 29.630 0.00 0.00 34.84 1.40
3576 3678 7.007723 ACAAAGTATGGAAAGTAATGTTCCCA 58.992 34.615 0.92 0.00 43.43 4.37
3605 3707 2.242965 TGAGGCAACCAATCAGGATCAT 59.757 45.455 0.00 0.00 41.22 2.45
3676 3778 7.934120 CCCAAAATTACAATGGAAAGGTACAAA 59.066 33.333 0.00 0.00 36.27 2.83
3679 3781 6.999950 ACCCAAAATTACAATGGAAAGGTAC 58.000 36.000 0.00 0.00 36.27 3.34
3682 3784 6.593770 GCTTACCCAAAATTACAATGGAAAGG 59.406 38.462 0.00 0.00 36.27 3.11
3683 3785 7.386059 AGCTTACCCAAAATTACAATGGAAAG 58.614 34.615 0.00 0.00 36.27 2.62
3765 3869 3.009473 AGGGTCAGCACATTATCACAGTT 59.991 43.478 0.00 0.00 0.00 3.16
3796 3900 5.627499 TGAGATGTTTATGACAAAGTGGC 57.373 39.130 0.00 0.00 42.62 5.01
3805 3909 8.443160 GTTCGTCAGAAAATGAGATGTTTATGA 58.557 33.333 0.00 0.00 39.07 2.15
3847 3951 5.470777 CGGTAGAAGTTATTGGTCCAACAAA 59.529 40.000 6.41 1.62 33.48 2.83
3855 3959 4.096984 CGGTAGTCGGTAGAAGTTATTGGT 59.903 45.833 0.00 0.00 34.75 3.67
3872 3976 0.107703 CACATCACATGGCCGGTAGT 60.108 55.000 1.90 0.00 33.60 2.73
3873 3977 1.439353 GCACATCACATGGCCGGTAG 61.439 60.000 1.90 0.00 33.60 3.18
3874 3978 1.451207 GCACATCACATGGCCGGTA 60.451 57.895 1.90 0.00 33.60 4.02
3875 3979 2.751436 GCACATCACATGGCCGGT 60.751 61.111 1.90 0.00 33.60 5.28
3876 3980 1.996786 GAAGCACATCACATGGCCGG 61.997 60.000 0.00 0.00 33.60 6.13
3877 3981 1.307355 TGAAGCACATCACATGGCCG 61.307 55.000 0.00 0.00 33.60 6.13
3878 3982 0.454600 CTGAAGCACATCACATGGCC 59.545 55.000 0.00 0.00 33.60 5.36
3937 4041 6.830324 TCTCTACAAAAATGAGGCAAGCATAT 59.170 34.615 0.00 0.00 0.00 1.78
3938 4042 6.179756 TCTCTACAAAAATGAGGCAAGCATA 58.820 36.000 0.00 0.00 0.00 3.14
3939 4043 5.012239 TCTCTACAAAAATGAGGCAAGCAT 58.988 37.500 0.00 0.00 0.00 3.79
3965 4069 5.348259 TGATACTGGGACCTATACCATGA 57.652 43.478 0.00 0.00 38.57 3.07
3972 4076 3.244215 CGCATGTTGATACTGGGACCTAT 60.244 47.826 0.00 0.00 0.00 2.57
3973 4077 2.102420 CGCATGTTGATACTGGGACCTA 59.898 50.000 0.00 0.00 0.00 3.08
4003 4459 6.840705 AGCCCATGATACCATTTGTTAGAATT 59.159 34.615 0.00 0.00 0.00 2.17
4014 4470 7.404104 TCTGAATAATCTAGCCCATGATACCAT 59.596 37.037 0.00 0.00 0.00 3.55
4039 4495 8.660373 CATCTAGATCAACAAAGTTGTAACCTC 58.340 37.037 1.03 2.04 41.31 3.85
4047 4503 8.270030 TGATCCATCATCTAGATCAACAAAGTT 58.730 33.333 1.03 0.00 42.50 2.66
4084 4540 6.422333 TCCTCCACATATTGTCTTTGCATAA 58.578 36.000 0.00 0.00 0.00 1.90
4092 4548 9.872684 AATAATTGATTCCTCCACATATTGTCT 57.127 29.630 0.00 0.00 0.00 3.41
4112 4568 8.632679 ACTTGACGATAATTGGCATCAATAATT 58.367 29.630 0.00 0.00 42.29 1.40
4113 4569 8.169977 ACTTGACGATAATTGGCATCAATAAT 57.830 30.769 0.00 0.00 42.29 1.28
4114 4570 7.566760 ACTTGACGATAATTGGCATCAATAA 57.433 32.000 0.00 0.00 42.29 1.40
4115 4571 7.498900 AGAACTTGACGATAATTGGCATCAATA 59.501 33.333 0.00 0.00 42.29 1.90
4116 4572 6.319658 AGAACTTGACGATAATTGGCATCAAT 59.680 34.615 0.00 0.00 44.77 2.57
4117 4573 5.647658 AGAACTTGACGATAATTGGCATCAA 59.352 36.000 0.00 0.00 37.28 2.57
4118 4574 5.185454 AGAACTTGACGATAATTGGCATCA 58.815 37.500 0.00 0.00 0.00 3.07
4119 4575 5.741388 AGAACTTGACGATAATTGGCATC 57.259 39.130 0.00 0.00 0.00 3.91
4120 4576 7.807977 ATTAGAACTTGACGATAATTGGCAT 57.192 32.000 0.00 0.00 0.00 4.40
4121 4577 7.766738 TGTATTAGAACTTGACGATAATTGGCA 59.233 33.333 0.00 0.00 0.00 4.92
4146 4602 7.023575 GTGCATTTAGTCAGAAGGTTTGTATG 58.976 38.462 0.00 0.00 0.00 2.39
4151 4607 3.826729 GGGTGCATTTAGTCAGAAGGTTT 59.173 43.478 0.00 0.00 0.00 3.27
4179 4635 3.244044 GCTCTGATCAGGGATAAGTGGAC 60.244 52.174 27.21 0.82 0.00 4.02
4192 4648 3.307269 CCAGTTTTGAGGAGCTCTGATCA 60.307 47.826 14.64 12.60 0.00 2.92
4234 4690 8.747471 AGGAAGACTACCTTAGTATTGTGTTAC 58.253 37.037 0.00 0.00 40.04 2.50
4241 4697 7.793948 ACACAAGGAAGACTACCTTAGTATT 57.206 36.000 0.00 0.00 44.65 1.89
4245 4701 6.097915 TCAACACAAGGAAGACTACCTTAG 57.902 41.667 0.00 0.00 44.65 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.