>input_sequence_35108
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------------------------------------------------------------------------ATGGTTCA
TTTGATTGGAGGCAATTTCCATGAGAAATGGAGCCGAAAAGCTACTCATGCTATATGCAATATGTTCAATGGTATATACT
ATATTATTCTTATGTTAGTCTCTTGACGAGTTTGAGCTGCATTCAGAATTTATAGCTGAGGCTTTCAATTGATTAGGTGA
AATATACGAGAAAGCTGATGAACGTGGTATTCCAATCGTGAATCACAGTTGGCTTTCGGACAGGTACTCGTATCTAACTA
GCCACTTACAAAGTTACTAAGTACACTAGCTTCATGAATATTTTCTCTGAAACATGCCTTTTTTCTT---TGCAGTCTAA
ATGCAGGGGTCATTCTTCCATGTGACAAATATTGTGTACCGTAAGTAAACCATGCATCTTGTTTTTCTGTCCAATGTCCT
AGTTTATAGTATTTCTTATTCCCTGAAAGATGAATCAATGCTTTTCGCTTCAACCAGAATTTGTAGCTTCTACGAATACG
ACCCTCTGTAATTTTTCCTGCGAGAAGTATGTGAATATCGATAATCTTTCTAGCTGGAGTTGCAGTTGCTTACAAAGAAA
CGCCAGGCTACCTTGCTGT-TTAGAAGTTGCTGCGGTTAATTTCTCTTCCTGCTGGACGTCCACTTTTCAAATATGCTAT
GTTACTTTGTATGCAGTGGTCAGGAAGTTCAGCAATGTGAGGATAATTTCAAAAGAGCATATGAACATCTATCAGAGACT
GGTCAAACTGAGATAAAAAGCAAATCATCTGGAGCAAAAACACCAGATGGCAGATCAATAAGCATTAGAGCAGACAGGTA
ACCATTTTTTCTGTTGCATTCATCTGATATTGTAGAATATAGTATGATTACACCAAGGCAGATATTATAAGCCCAGATGC
TCCAGATGGGTCTACTTATTGGGAATTGTATCCAGAATGTCATTCCTTTGTAGTTAATAGTAGTATTTTTGCTGACATGC
AGCACTAATAAGAGCATATGTTGT--------------------------------------------------CTTGTC
CTTTTGTTGCTTCCTGTGCAACCGGTGAATATGACACCACAATTAGCATGGATATTTCTGAAACATATTTACAGCATTGA
CAACACATGTCTTCCAAGGAACAAAATTACATATCAACATTCAATTCATACATCTGGAAATAAAAAGGAGAAATTCTGCT
GTGAATAGTACCTACTATT--------------AAATCAGCTACTATTCACAGTGCACATTGTCTTTTTTGTTTCTC-AG
TGTGCATTGAATTCAGATTTTGACTTGTTACTTGGTAGGCGCATATTTTGTTAATGTTGTCAGAATGTATCAGAATCTAT
GTTATGTTTTGGTGGTGATGTATCCTGAACAAATCATTTACCGTTCATGTAGGTTAACACAGTCAACGGGTAACAAAAAG
CTGAGGGTTGAAACAAACTTCATCTCTAAACCAAAGATCGTCCGTACCTTGCAGTTCAAGTCCGACAAGAAGACTTCTCT
TGATAACTATGTTAAACCCGACGACCGGGTTGTCTCCATCATATACCCAGATGAGGAGATCCCTCGGGACTTAACTGCTC
CAATCTTGAAAAGGGTTCTACGGAAATCATATCTTCCACTTGGCCGTTTGCACGTAGAGAATCTATCCCTAGGAGGAAAG
TTCGGCTGCCACAACTTTATGGTCTCTGATCCTCACGAGACTGTAGAGCTGTGCGATGTCATTACAGAGGAGCTGACACC
TGAAGGTAGAAAGGCAGACAAGAAGGCCTTTGTGAAAATGGTGAAGGGTCTTTTCGAATGGGTGCCAAGGGATGTCAGGG
TCTGGTTGCAGAACATTGAGGATGGCTGGGATGACGCTCTTCTGATGAATCACATCTACATGTTTGACTCAGACTCAACA
TTCGGCCAGTTCATCACTTTGTACCAAGGTGTGCTGAAGCTGAAGGAGAAGGGAGGTCAGAAGTACAAAGACTTCATCGA
GCTTCCTCGCATGCAAAGCTACAACGGTTGGCATGCTATCGGGTTTAAGTGGAAAATTCTTCGTGCTAACATGGACTACA
TAGATCCAAGAGAAGAACAGCTCGATGTACTTGAGAAAGCAAGACTGGAGCTGAAGAGAGAGAAGGATCCCTCAAGGAAG
AACGTGTTTGGTCTCCTGAGGACAGTCAAGAATACTTGGTCGCACCCTGCGAGGCACTTGCAAGAATTCTTCCTAGCCAT
CATGATTAGTGAGTACTTGCAGCTACTATCGGATGTCCAGAAAGCACTGTATGACTGTGGGTATTATGGACAGAATCTGA
GCCTCATGGACTTCCCCTGA------------------------------------------------------------
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>chr1B_1_TraesCS1B01G297400
TGGTCGGCGGTGGGGCGGCGCAGGCGCTGGCGCAGGCCTGCTGCTGCTGCCGTCTCCAAATCGG-TTATGTCGTACTTTG
ATTTCTACTAGGTCCGTAAGTCATGCTTGTCGGGTTCTATTTTCGTAGCGCTCTAATTGATAGCGTGGTACTGGTCACGC
AGAGAGATGAGAACCTGTAAACCTGTATGAGTTTGATTAATTTTCAGCAATAG-ATTGGGGGGCCATGGTTCTTAATTCG
AGAATAAACCAATGTCTATGTTTTGCTACTGATTCTCGACCCTCTCCTGTCCCAACTATCGTGATTTATTCTGCCCCTCT
GAATAAACTGAATAG------------------------------TTATTCTTTTGCGTGATCAAATTGACAGTATACTG
CTGCCTTGGAGAGCGGAGGAGCAATACCATCCAAGTTCTTTGGGGTGGATTCAGGGTGTAGTCATCTAATTGTATCAACA
TATGACGTTAACCATGTGAGGAAAATTGTTTCACGGTGCATTTGCTGTTTCAGTCTTTTTACCTGTAGCACATTATATGC
TAAAGCAAGTTTCTGAATGATATTTAGGATAATGAGTGGTGCACCAAGGGAGAAAAGGGTGGAGCTGCAGTTGTTAATGA
CCTTTGGTTGGACCATTGCCTCAAGCAAAGGCGCTTAATTCCTGCTGGGAAGGTACGGATTGCTTTTATATTGCATCTGC
TGCAAATTTAGATTACAATTCGTTTCACTTGCATAGCTCGCCTAATTAATGCATTTTCATTGGTGAAATTATTGTTATGC
TAGGTTATCTACAAACCTTTTATGAGAGGTGGAATCCTGGTTTCCTCAAAGTTACATATATGCTGCTCGGGCTATCAACA
TGAAGAGCTTCAAGATATCCAGGTGCACACGTGTGTGCACACAGACACACAAATATATTTGCTTTAGGCATAGTAGATAT
GAGATATGTTGTTAATGAGCTGTCGCTAACTGTACTCCCTCATTTTTCCACTTTTACTGCTGCATACAGAGAATGGTTCA
TTTGATTGGAGGCAATTTCCATGAGAAATGGAGCCGAAAAGCTACTCATGCTATATGCAATATGTTCAATGGTATATACT
ATATTATTCTTATGTTAGTCTCTTGACGAGTTTGAGCTGCATTCAGAATTTATAGCTGAGGCTTTCAATTGATTAGGTGA
AATATACGAGAAAGCTGATGAACGTGGTATTCCAATCGTGAATCACAGTTGGCTTTCGGACAGGTACTCGTATCTAACTA
GCCACTTACAAAGTTACTAAGTACACTAGCTTCATGAATATTTTCTCTGAAACATGCCTTTTTTCTT---TGCAGTCTAA
ATGCAGGGGTCATTCTTCCATGTGACAAATATTGTGTACCGTAAGTAAACCATGCATCTTGTTTTTCTGTCCAATGTCCT
AGTTTATAGTATTTCTTATTCCCTGAAAGATGAATCAATGCTTTTCGCTTCAACCAGAATTTGTAGCTTCTACGAATACG
ACCCTCTGTAATTTTTCCTGCGAGAAGTATGTGAATATCGATAATCTTTCTAGCTGGAGTTGCAGTTGCTTACAAAGAAA
CGCCAGGCTACCTTGCTGT-TTAGAAGTTGCTGCGGTTAATTTCTCTTCCTGCTGGACGTCCACTTTTCAAATATGCTAT
GTTACTTTGTATGCAGTGGTCAGGAAGTTCAGCAATGTGAGGATAATTTCAAAAGAGCATATGAACATCTATCAGAGACT
GGTCAAACTGAGATAAAAAGCAAATCATCTGGAGCAAAAACACCAGATGGCAGATCAATAAGCATTAGAGCAGACAGGTA
ACCATTTTTTCTGTTGCATTCATCTGATATTGTAGAATATAGTATGATTACACCAAGGCAGATATTATAAGCCCAGATGC
TCCAGATGGGTCTACTTATTGGGAATTGTATCCAGAATGTCATTCCTTTGTAGTTAATAGTAGTATTTTTGCTGACATGC
AGCACTAATAAGAGCATATGTTGT--------------------------------------------------CTTGTC
CTTTTGTTGCTTCCTGTGCAACCGGTGAATATGACACCACAATTAGCATGGATATTTCTGAAACATATTTACAGCATTGA
CAACACATGTCTTCCAAGGAACAAAATTACATATCAACATTCAATTCATACATCTGGAAATAAAAAGGAGAAATTCTGCT
GTGAATAGTACCTACTATT--------------AAATCAGCTACTATTCACAGTGCACATTGTCTTTTTTGTTTCTC-AG
TGTGCATTGAATTCAGATTTTGACTTGTTACTTGGTAGGCGCATATTTTGTTAATGTTGTCAGAATGTATCAGAATCTAT
GTTATGTTTTGGTGGTGATGTATCCTGAACAAATCATTTACCGTTCATGTAGGTTAACACAGTCAACGGGTAACAAAAAG
CTGAGGGTTGAAACAAACTTCATCTCTAAACCAAAGATCGTCCGTACCTTGCAGTTCAAGTCCGACAAGAAGACTTCTCT
TGATAACTATGTTAAACCCGACGACCGGGTTGTCTCCATCATATACCCAGATGAGGAGATCCCTCGGGACTTAACTGCTC
CAATCTTGAAAAGGGTTCTACGGAAATCATATCTTCCACTTGGCCGTTTGCACGTAGAGAATCTATCCCTAGGAGGAAAG
TTCGGCTGCCACAACTTTATGGTCTCTGATCCTCACGAGACTGTAGAGCTGTGCGATGTCATTACAGAGGAGCTGACACC
TGAAGGTAGAAAGGCAGACAAGAAGGCCTTTGTGAAAATGGTGAAGGGTCTTTTCGAATGGGTGCCAAGGGATGTCAGGG
TCTGGTTGCAGAACATTGAGGATGGCTGGGATGACGCTCTTCTGATGAATCACATCTACATGTTTGACTCAGACTCAACA
TTCGGCCAGTTCATCACTTTGTACCAAGGTGTGCTGAAGCTGAAGGAGAAGGGAGGTCAGAAGTACAAAGACTTCATCGA
GCTTCCTCGCATGCAAAGCTACAACGGTTGGCATGCTATCGGGTTTAAGTGGAAAATTCTTCGTGCTAACATGGACTACA
TAGATCCAAGAGAAGAACAGCTCGATGTACTTGAGAAAGCAAGACTGGAGCTGAAGAGAGAGAAGGATCCCTCAAGGAAG
AACGTGTTTGGTCTCCTGAGGACAGTCAAGAATACTTGGTCGCACCCTGCGAGGCACTTGCAAGAATTCTTCCTAGCCAT
CATGATTAGTGAGTACTTGCAGCTACTATCGGATGTCCAGAAAGCACTGTATGACTGTGGGTATTATGGACAGAATCTGA
GCCTCATGGACTTCCCCTGAGCTCCACACGAAAAACATCTAGAAAACTGCTGTTACGTGTACAGGTCACAGGAGCCTTCG
AGTGTTCTGAATGAAGCACGTTGAGAACTGTTGATATGTGTATAGTATAGGTGGTCACTGAAGCATCTCCCATGAAGACT
AGGGGCACTGACGTTGTGCAGAATGTCACATGTTTGTTTTGCTGGTATAGCCAAGATATTTCGTCGTTGTTTCATCCTAT
TTGTTTCATTCTGTCTATAGCTTGTAATGAACAATTAGGAAAGGAAAAAGAGAGGGAATGAATCCAATAATGATAGGTGG
GAACATTACTTTCCATACTTTGTTTCATGATCCTGATTGGTTGCCTCATGAGATACTCTTATGAGCAGTATTAAATGTCC
TTGAAAGAATGTTGTTTTTTGTACC--TTTCCATTGTAATTTTGGGTAAGCTTTTTGCCATTTCTTTTCAGTTGAGTTAT
ATGGATTCCTATGAATGAATTCTACAAGAACTGTGATAATGTGCTGACCCTGAGGACCTGCCACTTTGTCATAAACATCT
CATTTTCTGACGAACTTCTATTAACTGTACTTTGTTGGACCAATAACTTCTACCGACTACCGGCCATGTGATGTGCTTCA
GATGTTCAAACCTTTCTTCTTGTGAAACAGCAAGCTTCAAATATGCTTGCCTCATTTTTGTAGAGATCTCATGGTATA--
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------------------------------GGTCCCAGTATCAACATGCGACTCAAATAATTCTAACAAATGGTATCATG
GGCTAGATTATTCAGAGGTTACAACTTTGTTGATCTAGATGATGGATCATCATCAAGTTTTATGCAAAGACAATATGTGG
AGGAATCAATTATTGATGCCAATTATCGTCAAGTTCTAATACATACAAACCTTCTGACTAAATGCACCCATGCAGTCCAC
TTATCCCTGATCAGAGCTCCTCAAAACTGGATATCCAAAGGATTTGACCGTAACACAATACTAAGGTAGTCTTCCTTGTG
TTGAACAATATTAT
>chr1A_29
----------------------------GGCGCAGGCCTGCTTCTGCTGCCGTCTCCAAATCGGGTTGTGTCGTACTTCG
ATTTCTACT---TCTGCAAGTCATGCTCGTCAAGTTCTATTTTCGTAGCGCTCTAATTGATAGCGTG-------------
-----------AACCTGTAAACCTCTATGTGTTTGATTAATTTTCAGCAATAGAATTGGGGGGCCATGGTTCTTAATTCG
AGAATAAACCGATGTCTATATTTTGCCACTGATCCTCGACCCTTTCCTGTCCCAACTATCGTGATTTATTCTGCCCCTCT
GAATAAACTGAATAGTTCCAGTTCAGTTTCAGTTAGTATAACCTCTTATTCTTTC-------------------------
--GCCTTGGAGAGCGGAGGAGCGAAATCATCTAAGTTTGTTGGGTTGGATTCAGGGTGTAGTCATCTGATTGTATGAACA
TACGACGTTAACCTCTTA-----------------------TTCCTGTTTCAGT-TTTTTACCTGTAGCACATTATATGC
TAAAGCAAGTTTCTGAATGATATTTAGGATAATGAGTGGTGCACCAAGGAAGAAAAGGGTGGAGCTGCAGTTGTCAATGA
CCTTTGGTTGGACCATTGCCTCAAGCAAGGACGCTTAATTCCTGCTGGGAAGGTACAGATTGCTTTTATATTGCATCTGC
TGCAAATCTTA---------------------------------------------------------------------
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>chr1A_695
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------TTTAGATTAGAATTCGTTTCAGTTACGTAGCTCGCCTAGTTAATGCATTTTCATTGGTGAAATTGTTTTTATGC
TAGGTTATGTACAAACCTTTTGTGAGAGGTGGAATTCTGGTTTCTTCAAAGTTACAAATATGTTGCTCGGGCTATCAACA
CAAAAAGCTTCAAGATATCAAGGTGCACACGTGCGTGCACAGAGACACACAAATATA-TTGCTTTAGGCATAGTAGATAT
GAGATATGTGGTTAATGAGCTGTCGCTAACTGTACTCCCTCATTTT-CCACTTTTACTGCTGCATACAGAGAATGGTTCA
TTTGATTGGAGGCAATTTCCATGAGAAATGGAACCGAAAAGCTACACATGCCATATGCAATATGTTTGATGGTATATACT
ATATTATTCTTATGTTAGTCTTTTAACAAGTTTGAGCTACATTCAGAATTTATAGCTGAAGCTTTCGATTGATTTGGTGA
AATCTACAAGAAAGCTGATGAATGTGATATCCCGATTGTGAATCATAGTTGGCTCTGTGACAGGTACTCGTATCTAACTA
GCCACTTACAAAATTACTAAGTACACT----TCATGGATATTTTCTCTGAAACATCCCTTTTTTCTT---TGCAGCCTAA
ATGCAGGGGTCATTCTTTCATGTGACAACTATCATGTACTGTAAGTAAGCCATGCATCTTGTTTTTATGTCGAATGTCCT
AGTTTATATC---TCTTATTCCCTGAAAGATGAATCAATGCTTGTCGCTTCAACCAGAATTTGTTGCTTCTACGAATACG
ACCCTCTGTAATTTTTCAAGCGAGAAGTATGTGAATATCGATAATCTTTCTAGCTGGAGTTGCAGTTGCTTACAAAGAAA
CGCCAGGCAACCTTGCTGTTTTAGAAGTTGCTGCAGTTTATTTCTCTAACTGCTGGACCTCCACTTTTCAAATATGCTAT
GTTATTTTGTATGCAGTGGTCAAGAAGCAGAGCAATGTGAGGATAATTTCAAAAGAGCATACGCTCATCTATCAGAGACT
GGTCCAACTGAGATAAGAAGCAAATCATCTGGAGCCAAAACACCTGATGGCAGATCAATGAGCTTCAGAACAGACAGGTA
ACCATTTTTTCTGTTGCATTCATCTGATATTGTAGAATATAGTATGATTACACCAAGGCAGATATTATAAGCCCAGATGC
TCCAGATGGGTCTACTTATTGGGAATTGTATCCAGAATGTCATTCCT---------------------------------
--------------------TTGT--------------------------------------------------CTTATC
CTTTTGTTGCTTCCTGTGCAACCGGTGAACATGACACCACAATTAGCATGGACATTTCTGAAACATATTTACAGCATTGA
CAACACATGTCTTCCAAGGAGCAAAATTACATATCAACATTCAATTCACACATC-GGAAATAAAAAGGAGAAATTCAGCT
GTGAATAGTAGCTACTATTCACAGCACAATTTGAAATCAGCTACTATTCACAGTGCACGTTGTCTTTTTTGTTTCTCAAG
TGTGCATTGAATTTAGATTTTGACTTGTTACTTGGTAGGTGCATCTTTTGTTAATGTT----------------------
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>chr1D_1133
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--------------------------------------------AGAATTTATAGCTGAAGCTTTCGATTGATTAGGTGA
AATCTACAACAAAGCTGATGAATGTGGTATCCCGATTGTGAATCATAGTTGGCTCTGTGACAGGGGTCATTCTT------
------------GTTACTAAGTACACT----TCATGAATATTTTCTCTGAAACATCCCTGTTTTTTTCTTTGCAGCCT-A
ATGCAGGGGTCATTCTTTCATGCGACAACTATCATGTACCGTAAGTAAACCATGCATCTTGTTTTTCTGTCGAATGTCCT
AGTTTATATC---TCTTATTCCCTGAAAGATGAATCAATGCTTTTCTCTTCAACCAGAATGTGTTGCTTCTACGAACACG
ACCCTCTGTAATTTTTCCTGCGAGAAGTATGTGAATATCAATAATCTTTCTAGCTGGAGTTGCAGTTGCTTACAAAGAAA
CGCCAGGCTACCTTGTTG-TTTAGAAGTTGCTGCAGTTTATTTCTCTAACTGCTGGACGTCCACTTTTCAAATATGCTAT
GTTATTTTGTATGCAGTGGTCAAGAGGCAGAGCAATGTGAGGATAATTTCAAAAGAGCATACGCTCATCTATCAGAGACT
GGTCCAACTGAGATAAGAAGCAAATCATCTGGAGCCAAAACACCTGATGGCAGATCAATCAGCTTCAGAACAGACAGGTA
ACCATTTTTTCTGTTGCATTCATCTGACATTGTAGAATATAGTATGATTACACCAAGGCAGATATTATAAGCCCAGATGC
TCCAGATGGGTCTGCTTATTGGGAATTGTATCCAGAATGTCATTCCT---------------------------------
--------------------TTGTAGTTAATAGTATTTTTGCTGACATGCAGCACTAATAAGAGCATATGTTGTCTTATC
CTTTTGTTGCTTCCTGTGCAACCGGTGAACATGACACCACAATTAGCATGGACATTTCTGAAACATATTTACAGCATTAA
CAACACATGTCCTCCAAGGAACAAAATTACATATCAACATTCAATTCACACATCTGGAAATAAAAGGGAGAAATTCTGCT
GTGAATAGTTGCTACTATTCACAGCACAATTTGAAATCAGCTACTATTCGCAGTGCACATTGTCTTTTTTGTTTCTCAAG
TGTGCATTGAATTCAGATTTTGACTTGTTACTTGGTAGGCGCATCTTTTGTTAACGTT----------------------
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>chr1A_2259
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---------------------------------------CGAATCTTTTGTTAATGTTGTCAGAATATATCAGAATCTAT
GCTATGTTTTGGTGGTGCAGTATCCTAAACAAATCATTTACCGTTCATGTATATTAACACATTCGACGGGTAAAAAA--G
CTGAGGGTTGAAACAAACTTCATCTCTAAACCAAAGATCGCCCGCTGCTTGCAGTTCAAGTCCGACAAAAAGACTTCTCT
TGATAACTATGTTAAACCCGACAATCGGGTTGTCTCTATCGAATAACCAGATGAGGAGATCACTTGGGTCTTAACTACTC
CAGTCTTGAAAAGGGTTCTACGGAAATCATATCTTCCACTTGGTCGTTTGCACGCGAAGAATCTATCCCTAGGAGGAAAC
TTCGGCTGCCAGAACTTTATGGTCTCTGATCCTCATGAGACCGTAGAGTTGTGCAATGTCATTACTGAGGAGCTGACACC
TGAAGGTAGAAAGGCAGACAAGAAGGTG-TCGTGAAAATGGTGAAGGGTCTTTTCAAATGGGTGCCAAGGGATGTCAGGG
TCTGGTTGCATGACATCGAGGGTGGCTGGGATGACGCTCTTCTGATGAATCACATCTATTTGTTTAACTCAGACTTGACA
TACGACCACTTCATCACTTTGGACCAAGGTGTGTTGAAGCTGAACCAGAAAGGAGGTCAGAAGTACAAAGACTTCATCGA
GCTTCCTAGCATGCAACCCTACAACTGTTGGCATGCTGACGGGTTTAAGTGGAAAATGCTTGGTGCTAACAAGGACTACA
CGGACCCAAGAGATGAACAACTTGATATACTTGAAAAAGCAAGACTGGAGCGGAAGAGAGAGAACAATCCCTCAAGGAAC
AACGTGTTTGGTCTCCTGAGGACGGTAAGGAACACTTGGTCCCGCCCTGCGGCCCATTTGCTAGAATTCTTCCTAGCCAT
CATGATTACTGAGTACTTGCAACTACTCTCGGACCTCCAAAAAGCATTGTATGACTGTGGCCACTATGGACAGAATCTGA
GCCTCATGGACTTCCCCTGAGCTCCACATGAAGAACATCTAGAGAACTGTTGTTACGTGTACAGGCAGCCAGAGCCTTCT
AGTATTCTGAATGAAGCACGTTGGGAACTGTTGATATGTGTATAGTATAGGTGGCCACTGAAGCATCTGCCACGAAGGTT
AGGGGCAATGATGTTGTAGAGAATGTCACATGTTTGTGTTGCTGGTGTAGCCAAGATATTTGGTCATTGTTTCATACTAT
TTGTTTCAT-----------------------------------------------------------------------
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>chr1D_2518
ATCCG---------------------------------------------------------------------------
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---------------------------------------------------------------TCGGGACTTAACTGCTC
CAATCTTGAAAAGGGTTCTACGAAAATCATATCTTCCACTTTGTTGTCTGCACGATGAGAATCTATCCTTAGGAGGAAAC
TTCGGCCGCGAGAATTTTATTGGCTCTAATCCTCATGAAACTGTAGAGTTGTGCAATGTCATTACTAAGGAGCTTACGCC
AGATGGTAGAAAGGCAGACAAGAAGGCATTCGTGAAAATGGTCAAGGGTCTTTTCAAATGGGTGCCAAGGGATGTCAGAG
TCTGGTT-CATGACATTGAGGATGGCTGGGATGACGCTCTCCTGATGAACCATACATACATGTTTGACTCGGACGCGACA
TACGACCAGTTCATCACTTTGTACCAAGGTGTGCTGAAGCTGAAGCAGAAAGGAGGTCAGGAGTACAAAGACTTCTTCGA
GCTTCCTAGCATGCAACTCTACAACAGTTCGCATGCTGACGGGTTTAAGTGGAAAATTCTTGATGCTAACAAGGACTACA
CAGATCCAAGAGAAGAACAACTCGATGAACTTGAAAAGGCAAGACTGGAGCGGAAGAGAGAGTAGGATCCCTCAAGGAAG
AACGTGTTTGGTCTCTTGAGGACAGTGAGGAATACTTGGTCGCACCCTGCGAGGTACTTGCAAGAACTCTTCCTAGCCAT
C-------------------------------------------------------------------------------
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>chr1D_3176
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----------------------------------------------------------------------------CCAT
CATGATTAGTGAGTACTTGCAGCTGTTGTCGGACGTCCAGAAAGCACTGTATGACTGTGGCTACTATGGACAGAATCTGA
GCCTCATGGACTTCCCCTGAGATCCACATGAAGAACATCTAGAGAATTGTTGTTACGTGTACAGGTCACCAGAGTCTTCC
AGTGTTCCGAATTAAGCACGTTGAGAACTGTTGATATGTGTGTAGTATAGGTGGCCACTGAAGCATCTGCCATGAAGGTT
AGGGGCACTGATGTTGTGGAGAATGTCACGTATTTGTGCTGCTGGTATAGCCAAGATATTTCGATGTTGTTTGATCCTAT
TTGTTTCATTCTGTCTATAGCTTGTGATGAACAATTAGGAAAGGAAAAGGAGAGGGAATGAATCCGATAATGATAGGCGG
GGACATTACTTTCCATACTTTGTTTCGTGATCCTGATTGGTTGCCTCATGAGATACTCTTATGAGCAGTATTAAATGTCC
TTGAAAGAATGTTGTTTCTTTTATACATTTCCATTGTAATTTTGGGTAAGCTTTTTGCCATTTCTTTTTAGTTGAGTTAT
ATGGATTCCTATGAATGAATTCTACAAGTACTGTGATAATGTGCTGACCCTGAGGACCTACCACTTTGCCATAAACATCT
CATTTTCTGACGAACTTCTATTAACTGTAC-TTGTTGGGCCAATAACTTCTACCG-------GCCATGTGATGTGCTTCA
GATGTTCAAACCTTTCTTCTTGTGAAACAACAAGCTTCAATATTGCTTGCCTCATTTTTGTAGAGATCCCATGGTTAACA
TGGTGCCTTAAGTATTTACCAATTTGTAGTGCGTAGAAGTTATATCGAATATTGTGTACAAGTTAGACTTCAAGTCGTAC
AATGTGTATATAGGATATGGAGTCGTATCCTAATATGACACTTGTATCCTAGGCCTCCTATATAATGTGGGAGTAGACAT
ATATAACATATAACAACATAATAGCACATGCGCACAGGGAAGCCGATGGCATGTGCCAATGCCTGGGTGGGCGGCGGGCG
GTATTGTAGCAGTCCCATGGAGAGGAAAACCCCGTCAGGCCCCGGGGATTAGCCCATGTTCGTTGAACCTCATTAAAAAA
ATCTCGGTGTTGTGCTTCCTGTGATGTATTGGTCCCAGTATCAACATGCAACTCAAATTATTCTAACAAGTGGTATCATG
GGCTAGATTATTCAAAGGTTACGACTTTGTTGATCTAGATGATGGATCGTCATCAAGTTCTATGCAAGGACAATATGCGG
AGGAATC----------GCCAATTATCGTCAAGTTCTAATATATACCAACCTTCGGAGTAAATGCACCCATGCAATCCAC
TTATCCCCGATCAGAGCTCTTCAAAACTGGATATCCAAAGGATTTGACCATAACACGATATTAAGGTAGTCTTCCTTGTG
TTGAACAATATTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S------------------------S----------S-
---------SSS--S-S----------S---SS----------------------------------SSSSSSSSSSSSS
SSSSSSSSSSS-------------S----S--------------------------------------------------
----------S--------S------S------S---------S------------------------------------
------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------------------S-S-S----S-----SS-----S----------------------S-------S----
--S----------SSS-SSSSSSSSSSSSSSSSSSSSSSSS--S----------S-------------------------
-------------------------------------------------S------------------------S-----
----------------------------S-S-------------------------S-----------------------
---------------S-----------S--S-S-----------S-------------------------S--S------
--------S------------S-------------S--------S-----------S-----S-----------------
SS--S--------------S-------------S-------S---------------S----------------------
---------S------------------------------------S---------------------------------
--------------------------------S------------S-----S--------------SS------------
---------------------S--S--S----------S--------------------S------S-------------
---S---S--------------S-------S--S--S--------S--------S-SS----------------------
---------------------------SSSS------------------------S-------------------S----
-----------------S----------S---SS-------------------------------------S--------
--------SSSSS---------------------------------------------------S---------------
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----------------------------------S---S--------SS-------------------------------
----S-----------------S----SSS-------------------------------S-SS---------------
----S-----------S------------------S--------S--------------S---S-S---S----------
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-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS---------------------------------------------------------S--
-----------------------------S----------------------S---------------------------
------------------------------------------------S-------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------S---------------------S-------------
-S---------------SS-------S------------------------SS--------S--S--------S---SS-
----------------------------------------S---SSS---------------------S-----------
----------------------S-S-----------S---SS---S---------------S------------------
-------------------------------------------S----------SS-----------------------S
-----------S-----------------------S------------S-----S----------S--------------
---------------------------S--S------------------------S------------------------
----------SS----------------------------------------------------------------S---
-S--S----------------------------------------S----S-----------------------------
-------S--------SS-------S-----------SS----------------------S---------S--------
S------------------S--------------S----------------S----------------------------
--------------------------S-S---------------------------------------------------
---------------------------S-----S--------------------------S--S----------------
----------------------------S---S----------S-----S-------------------SS--------S
------------------------------------------------------S-------------S--------SS-
-----------S------S------------------S------------------------------------------
-------------------------S----------------------S----------------S-----------S--
-S------------------------S-----------------------------------------------------
-----------------S--S--SS-------------------------------------------S-----------
----------------------------S------------------------------S--------S-----------
------------------------------S-------S----------------SSSSSSS------------------
-----------------------------S----------SSS-------------------------S------SS---
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-------------------------------------------------S--------S----------S----------
--------------S-------S-------------------------S----------S-------S---------S--
-------SSSSSSSSSS------------------------S----S-------S--S----------------S-----
-------S-----------S-----------------------------S------S---S-------------------
--------------
>forward_427
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-------GGAGAGCGGAGGAGCAATAC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_1246
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CAGTTGGCTTTCGGACAGGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_881
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCTGCTCGGGCTATCAACA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2622
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTCGGGACTTAACTGCTC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_2110
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTCCTGTGCAACCGGTGAAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_3976
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACTACCGGCCATGTGATGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
