Multiple sequence alignment - TraesCS1B01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G296900 chr1B 100.000 3374 0 0 1 3374 516947133 516950506 0.000000e+00 6231.0
1 TraesCS1B01G296900 chr1D 97.084 2229 56 7 714 2938 384831850 384834073 0.000000e+00 3747.0
2 TraesCS1B01G296900 chr1D 92.500 320 15 7 3062 3374 384834751 384835068 1.850000e-122 449.0
3 TraesCS1B01G296900 chr1D 83.759 431 53 8 259 688 384831206 384831620 3.160000e-105 392.0
4 TraesCS1B01G296900 chr1D 97.561 41 1 0 682 722 384831640 384831680 1.680000e-08 71.3
5 TraesCS1B01G296900 chr1A 96.116 2137 65 7 762 2885 484998640 485000771 0.000000e+00 3470.0
6 TraesCS1B01G296900 chr1A 88.041 393 20 10 2992 3372 485001077 485001454 1.110000e-119 440.0
7 TraesCS1B01G296900 chr1A 80.645 155 27 3 459 612 147791508 147791660 2.130000e-22 117.0
8 TraesCS1B01G296900 chr3D 78.456 1360 239 32 1025 2370 460252146 460250827 0.000000e+00 839.0
9 TraesCS1B01G296900 chr3B 78.740 1317 231 31 1069 2370 610178814 610177532 0.000000e+00 835.0
10 TraesCS1B01G296900 chr3B 85.616 146 21 0 84 229 586145500 586145355 1.620000e-33 154.0
11 TraesCS1B01G296900 chr3B 77.914 163 33 3 499 659 598981057 598980896 7.700000e-17 99.0
12 TraesCS1B01G296900 chr3B 95.122 41 2 0 2884 2924 734160697 734160657 7.810000e-07 65.8
13 TraesCS1B01G296900 chr3A 78.107 1352 249 27 1029 2370 602241532 602240218 0.000000e+00 813.0
14 TraesCS1B01G296900 chr2D 90.476 189 16 2 41 227 380686988 380687176 7.230000e-62 248.0
15 TraesCS1B01G296900 chr2D 92.857 42 2 1 2883 2924 651527785 651527825 3.640000e-05 60.2
16 TraesCS1B01G296900 chr6B 86.207 232 27 5 1 227 317560673 317560904 2.600000e-61 246.0
17 TraesCS1B01G296900 chr6B 95.238 42 2 0 2883 2924 717901629 717901588 2.170000e-07 67.6
18 TraesCS1B01G296900 chr4D 86.522 230 24 5 2 226 19065440 19065667 2.600000e-61 246.0
19 TraesCS1B01G296900 chr4D 95.238 42 2 0 2890 2931 295018818 295018777 2.170000e-07 67.6
20 TraesCS1B01G296900 chr4D 97.368 38 1 0 2887 2924 101653210 101653247 7.810000e-07 65.8
21 TraesCS1B01G296900 chr6A 91.176 136 12 0 95 230 578607628 578607763 5.750000e-43 185.0
22 TraesCS1B01G296900 chr5A 84.472 161 25 0 67 227 626091426 626091266 3.480000e-35 159.0
23 TraesCS1B01G296900 chrUn 82.530 166 24 5 472 634 17532871 17532708 1.260000e-29 141.0
24 TraesCS1B01G296900 chr7A 85.185 135 20 0 96 230 225437409 225437543 4.540000e-29 139.0
25 TraesCS1B01G296900 chr7A 88.235 51 4 2 2876 2924 21259918 21259968 3.640000e-05 60.2
26 TraesCS1B01G296900 chr6D 80.745 161 27 4 68 226 277330757 277330915 4.570000e-24 122.0
27 TraesCS1B01G296900 chr6D 80.745 161 27 4 68 226 277331557 277331715 4.570000e-24 122.0
28 TraesCS1B01G296900 chr2B 97.619 42 1 0 2890 2931 771505668 771505709 4.670000e-09 73.1
29 TraesCS1B01G296900 chr4B 97.368 38 1 0 2887 2924 145804137 145804174 7.810000e-07 65.8
30 TraesCS1B01G296900 chr5B 100.000 28 0 0 2833 2860 34559753 34559780 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G296900 chr1B 516947133 516950506 3373 False 6231.000 6231 100.0000 1 3374 1 chr1B.!!$F1 3373
1 TraesCS1B01G296900 chr1D 384831206 384835068 3862 False 1164.825 3747 92.7260 259 3374 4 chr1D.!!$F1 3115
2 TraesCS1B01G296900 chr1A 484998640 485001454 2814 False 1955.000 3470 92.0785 762 3372 2 chr1A.!!$F2 2610
3 TraesCS1B01G296900 chr3D 460250827 460252146 1319 True 839.000 839 78.4560 1025 2370 1 chr3D.!!$R1 1345
4 TraesCS1B01G296900 chr3B 610177532 610178814 1282 True 835.000 835 78.7400 1069 2370 1 chr3B.!!$R3 1301
5 TraesCS1B01G296900 chr3A 602240218 602241532 1314 True 813.000 813 78.1070 1029 2370 1 chr3A.!!$R1 1341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.032952 GACACACAGTGCGGTCCTAA 59.967 55.0 12.81 0.0 36.98 2.69 F
53 54 0.033504 ACACACAGTGCGGTCCTAAG 59.966 55.0 0.00 0.0 36.98 2.18 F
54 55 0.033504 CACACAGTGCGGTCCTAAGT 59.966 55.0 0.00 0.0 0.00 2.24 F
55 56 0.033504 ACACAGTGCGGTCCTAAGTG 59.966 55.0 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 2084 1.125093 TTCTTCTCCCGGTCCTGCAA 61.125 55.000 0.00 0.0 0.00 4.08 R
2337 2551 2.635229 CTTCCCGGAGCACCATCTCG 62.635 65.000 0.73 0.0 33.98 4.04 R
2370 2584 5.348451 GCTGCGGAAAATTACAAATGTTCAT 59.652 36.000 0.00 0.0 0.00 2.57 R
2431 2647 1.765314 AGATCAGATAAACAGGGCGCT 59.235 47.619 7.64 0.0 0.00 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.895232 ATACTCACTGACACATGGGAC 57.105 47.619 0.00 0.00 0.00 4.46
21 22 0.687354 ACTCACTGACACATGGGACC 59.313 55.000 0.00 0.00 0.00 4.46
22 23 0.036010 CTCACTGACACATGGGACCC 60.036 60.000 0.00 2.45 0.00 4.46
23 24 0.766288 TCACTGACACATGGGACCCA 60.766 55.000 17.73 17.73 38.19 4.51
24 25 0.329261 CACTGACACATGGGACCCAT 59.671 55.000 21.22 21.22 46.37 4.00
25 26 0.620556 ACTGACACATGGGACCCATC 59.379 55.000 24.08 13.84 43.15 3.51
26 27 0.462581 CTGACACATGGGACCCATCG 60.463 60.000 24.08 19.01 43.15 3.84
27 28 0.907230 TGACACATGGGACCCATCGA 60.907 55.000 24.08 2.81 43.15 3.59
28 29 0.179073 GACACATGGGACCCATCGAG 60.179 60.000 24.08 17.33 43.15 4.04
29 30 0.909610 ACACATGGGACCCATCGAGT 60.910 55.000 24.08 17.96 43.15 4.18
30 31 1.119684 CACATGGGACCCATCGAGTA 58.880 55.000 24.08 0.00 43.15 2.59
31 32 1.069204 CACATGGGACCCATCGAGTAG 59.931 57.143 24.08 13.48 43.15 2.57
32 33 0.681733 CATGGGACCCATCGAGTAGG 59.318 60.000 24.08 6.70 43.15 3.18
40 41 1.182667 CCATCGAGTAGGGACACACA 58.817 55.000 0.00 0.00 0.00 3.72
41 42 1.135139 CCATCGAGTAGGGACACACAG 59.865 57.143 0.00 0.00 0.00 3.66
42 43 1.819288 CATCGAGTAGGGACACACAGT 59.181 52.381 0.00 0.00 0.00 3.55
43 44 1.244816 TCGAGTAGGGACACACAGTG 58.755 55.000 0.00 0.00 39.75 3.66
44 45 0.388649 CGAGTAGGGACACACAGTGC 60.389 60.000 0.00 0.00 36.98 4.40
45 46 0.388649 GAGTAGGGACACACAGTGCG 60.389 60.000 0.00 0.00 39.86 5.34
46 47 1.374252 GTAGGGACACACAGTGCGG 60.374 63.158 0.00 0.00 39.86 5.69
47 48 1.835267 TAGGGACACACAGTGCGGT 60.835 57.895 0.00 0.00 39.86 5.68
48 49 1.812686 TAGGGACACACAGTGCGGTC 61.813 60.000 14.71 14.71 39.86 4.79
49 50 2.665185 GGACACACAGTGCGGTCC 60.665 66.667 22.60 22.60 37.76 4.46
50 51 2.421739 GACACACAGTGCGGTCCT 59.578 61.111 12.81 0.00 36.98 3.85
51 52 1.663739 GACACACAGTGCGGTCCTA 59.336 57.895 12.81 0.00 36.98 2.94
52 53 0.032952 GACACACAGTGCGGTCCTAA 59.967 55.000 12.81 0.00 36.98 2.69
53 54 0.033504 ACACACAGTGCGGTCCTAAG 59.966 55.000 0.00 0.00 36.98 2.18
54 55 0.033504 CACACAGTGCGGTCCTAAGT 59.966 55.000 0.00 0.00 0.00 2.24
55 56 0.033504 ACACAGTGCGGTCCTAAGTG 59.966 55.000 0.00 0.00 0.00 3.16
56 57 0.670546 CACAGTGCGGTCCTAAGTGG 60.671 60.000 0.00 0.00 37.10 4.00
57 58 1.741770 CAGTGCGGTCCTAAGTGGC 60.742 63.158 0.00 0.00 35.26 5.01
58 59 2.214216 AGTGCGGTCCTAAGTGGCA 61.214 57.895 0.00 0.00 35.26 4.92
59 60 1.302192 GTGCGGTCCTAAGTGGCAA 60.302 57.895 0.00 0.00 35.10 4.52
60 61 1.003839 TGCGGTCCTAAGTGGCAAG 60.004 57.895 0.00 0.00 35.26 4.01
61 62 1.003718 GCGGTCCTAAGTGGCAAGT 60.004 57.895 0.00 0.00 35.26 3.16
62 63 0.248289 GCGGTCCTAAGTGGCAAGTA 59.752 55.000 0.00 0.00 35.26 2.24
63 64 1.338389 GCGGTCCTAAGTGGCAAGTAA 60.338 52.381 0.00 0.00 35.26 2.24
64 65 2.872842 GCGGTCCTAAGTGGCAAGTAAA 60.873 50.000 0.00 0.00 35.26 2.01
65 66 3.404899 CGGTCCTAAGTGGCAAGTAAAA 58.595 45.455 0.00 0.00 35.26 1.52
66 67 4.007659 CGGTCCTAAGTGGCAAGTAAAAT 58.992 43.478 0.00 0.00 35.26 1.82
67 68 4.457949 CGGTCCTAAGTGGCAAGTAAAATT 59.542 41.667 0.00 0.00 35.26 1.82
68 69 5.048294 CGGTCCTAAGTGGCAAGTAAAATTT 60.048 40.000 0.00 0.00 35.26 1.82
69 70 6.156519 GGTCCTAAGTGGCAAGTAAAATTTG 58.843 40.000 0.00 0.00 35.26 2.32
70 71 6.015772 GGTCCTAAGTGGCAAGTAAAATTTGA 60.016 38.462 0.00 0.00 35.26 2.69
71 72 6.861572 GTCCTAAGTGGCAAGTAAAATTTGAC 59.138 38.462 0.00 0.00 34.08 3.18
72 73 6.015772 TCCTAAGTGGCAAGTAAAATTTGACC 60.016 38.462 1.74 0.00 32.44 4.02
73 74 4.237349 AGTGGCAAGTAAAATTTGACCG 57.763 40.909 1.74 0.00 32.44 4.79
74 75 3.005367 AGTGGCAAGTAAAATTTGACCGG 59.995 43.478 0.00 0.00 32.44 5.28
75 76 2.959707 TGGCAAGTAAAATTTGACCGGT 59.040 40.909 6.92 6.92 32.44 5.28
76 77 3.004944 TGGCAAGTAAAATTTGACCGGTC 59.995 43.478 28.17 28.17 32.44 4.79
77 78 3.004944 GGCAAGTAAAATTTGACCGGTCA 59.995 43.478 33.23 33.23 37.91 4.02
78 79 4.500035 GGCAAGTAAAATTTGACCGGTCAA 60.500 41.667 39.59 39.59 46.72 3.18
91 92 7.556733 TTGACCGGTCAACCATATAAAATAC 57.443 36.000 39.59 8.43 43.90 1.89
92 93 6.651086 TGACCGGTCAACCATATAAAATACA 58.349 36.000 34.60 5.64 36.53 2.29
93 94 7.110810 TGACCGGTCAACCATATAAAATACAA 58.889 34.615 34.60 4.54 36.53 2.41
94 95 7.776030 TGACCGGTCAACCATATAAAATACAAT 59.224 33.333 34.60 0.00 36.53 2.71
95 96 7.936584 ACCGGTCAACCATATAAAATACAATG 58.063 34.615 0.00 0.00 35.14 2.82
96 97 6.861055 CCGGTCAACCATATAAAATACAATGC 59.139 38.462 0.00 0.00 35.14 3.56
97 98 7.255451 CCGGTCAACCATATAAAATACAATGCT 60.255 37.037 0.00 0.00 35.14 3.79
98 99 8.779303 CGGTCAACCATATAAAATACAATGCTA 58.221 33.333 0.00 0.00 35.14 3.49
104 105 9.953565 ACCATATAAAATACAATGCTATACGGT 57.046 29.630 0.00 0.00 0.00 4.83
109 110 7.435068 AAAATACAATGCTATACGGTGATCC 57.565 36.000 0.00 0.00 0.00 3.36
110 111 5.738619 ATACAATGCTATACGGTGATCCA 57.261 39.130 0.00 0.00 0.00 3.41
111 112 3.995199 ACAATGCTATACGGTGATCCAG 58.005 45.455 0.00 0.00 0.00 3.86
112 113 3.388024 ACAATGCTATACGGTGATCCAGT 59.612 43.478 0.00 0.00 0.00 4.00
113 114 3.667497 ATGCTATACGGTGATCCAGTG 57.333 47.619 0.00 0.00 0.00 3.66
114 115 2.661718 TGCTATACGGTGATCCAGTGA 58.338 47.619 0.00 0.00 0.00 3.41
115 116 2.361119 TGCTATACGGTGATCCAGTGAC 59.639 50.000 0.00 0.00 0.00 3.67
116 117 2.288273 GCTATACGGTGATCCAGTGACC 60.288 54.545 0.00 0.00 0.00 4.02
118 119 2.970639 CGGTGATCCAGTGACCGT 59.029 61.111 12.20 0.00 46.11 4.83
119 120 2.186155 CGGTGATCCAGTGACCGTA 58.814 57.895 12.20 0.00 46.11 4.02
120 121 0.744874 CGGTGATCCAGTGACCGTAT 59.255 55.000 12.20 0.00 46.11 3.06
121 122 1.951602 CGGTGATCCAGTGACCGTATA 59.048 52.381 12.20 0.00 46.11 1.47
122 123 2.359848 CGGTGATCCAGTGACCGTATAA 59.640 50.000 12.20 0.00 46.11 0.98
123 124 3.005472 CGGTGATCCAGTGACCGTATAAT 59.995 47.826 12.20 0.00 46.11 1.28
124 125 4.557205 GGTGATCCAGTGACCGTATAATC 58.443 47.826 0.00 0.00 0.00 1.75
125 126 4.038763 GGTGATCCAGTGACCGTATAATCA 59.961 45.833 0.00 0.00 0.00 2.57
126 127 5.279506 GGTGATCCAGTGACCGTATAATCAT 60.280 44.000 0.00 0.00 0.00 2.45
127 128 5.864474 GTGATCCAGTGACCGTATAATCATC 59.136 44.000 0.00 0.00 0.00 2.92
128 129 4.499037 TCCAGTGACCGTATAATCATCG 57.501 45.455 0.00 0.00 0.00 3.84
129 130 2.987149 CCAGTGACCGTATAATCATCGC 59.013 50.000 0.00 0.00 0.00 4.58
130 131 3.552068 CCAGTGACCGTATAATCATCGCA 60.552 47.826 0.00 0.00 0.00 5.10
131 132 4.048504 CAGTGACCGTATAATCATCGCAA 58.951 43.478 0.00 0.00 0.00 4.85
132 133 4.049186 AGTGACCGTATAATCATCGCAAC 58.951 43.478 0.00 0.00 0.00 4.17
133 134 4.049186 GTGACCGTATAATCATCGCAACT 58.951 43.478 0.00 0.00 0.00 3.16
134 135 4.148348 GTGACCGTATAATCATCGCAACTC 59.852 45.833 0.00 0.00 0.00 3.01
135 136 3.305964 ACCGTATAATCATCGCAACTCG 58.694 45.455 0.00 0.00 40.15 4.18
136 137 3.243301 ACCGTATAATCATCGCAACTCGT 60.243 43.478 0.00 0.00 39.67 4.18
137 138 4.023792 ACCGTATAATCATCGCAACTCGTA 60.024 41.667 0.00 0.00 39.67 3.43
138 139 5.093457 CCGTATAATCATCGCAACTCGTAT 58.907 41.667 0.00 0.00 39.67 3.06
139 140 5.571741 CCGTATAATCATCGCAACTCGTATT 59.428 40.000 0.00 0.00 39.67 1.89
140 141 6.089016 CCGTATAATCATCGCAACTCGTATTT 59.911 38.462 0.00 0.00 39.67 1.40
141 142 7.271868 CCGTATAATCATCGCAACTCGTATTTA 59.728 37.037 0.00 0.00 39.67 1.40
142 143 8.632551 CGTATAATCATCGCAACTCGTATTTAA 58.367 33.333 0.00 0.00 39.67 1.52
145 146 7.477144 AATCATCGCAACTCGTATTTAATGA 57.523 32.000 0.00 0.00 39.67 2.57
146 147 6.268797 TCATCGCAACTCGTATTTAATGAC 57.731 37.500 0.00 0.00 39.67 3.06
147 148 5.233476 TCATCGCAACTCGTATTTAATGACC 59.767 40.000 0.00 0.00 39.67 4.02
148 149 3.548668 TCGCAACTCGTATTTAATGACCG 59.451 43.478 0.00 0.00 39.67 4.79
149 150 3.305094 CGCAACTCGTATTTAATGACCGT 59.695 43.478 0.00 0.00 0.00 4.83
150 151 4.500117 CGCAACTCGTATTTAATGACCGTA 59.500 41.667 0.00 0.00 0.00 4.02
151 152 5.174398 CGCAACTCGTATTTAATGACCGTAT 59.826 40.000 0.00 0.00 0.00 3.06
152 153 6.291955 CGCAACTCGTATTTAATGACCGTATT 60.292 38.462 0.00 0.00 0.00 1.89
153 154 6.844279 GCAACTCGTATTTAATGACCGTATTG 59.156 38.462 0.00 0.00 0.00 1.90
154 155 7.254185 GCAACTCGTATTTAATGACCGTATTGA 60.254 37.037 0.00 0.00 0.00 2.57
155 156 7.925703 ACTCGTATTTAATGACCGTATTGAG 57.074 36.000 0.00 0.00 0.00 3.02
156 157 6.420008 ACTCGTATTTAATGACCGTATTGAGC 59.580 38.462 0.00 0.00 0.00 4.26
157 158 5.400188 TCGTATTTAATGACCGTATTGAGCG 59.600 40.000 0.00 0.00 0.00 5.03
158 159 5.174398 CGTATTTAATGACCGTATTGAGCGT 59.826 40.000 0.00 0.00 0.00 5.07
159 160 6.360414 CGTATTTAATGACCGTATTGAGCGTA 59.640 38.462 0.00 0.00 0.00 4.42
160 161 7.061441 CGTATTTAATGACCGTATTGAGCGTAT 59.939 37.037 0.00 0.00 0.00 3.06
161 162 7.724305 ATTTAATGACCGTATTGAGCGTATT 57.276 32.000 0.00 0.00 0.00 1.89
162 163 6.758593 TTAATGACCGTATTGAGCGTATTC 57.241 37.500 0.00 0.00 0.00 1.75
163 164 4.585955 ATGACCGTATTGAGCGTATTCT 57.414 40.909 0.00 0.00 0.00 2.40
164 165 5.700722 ATGACCGTATTGAGCGTATTCTA 57.299 39.130 0.00 0.00 0.00 2.10
165 166 5.503662 TGACCGTATTGAGCGTATTCTAA 57.496 39.130 0.00 0.00 0.00 2.10
166 167 5.893687 TGACCGTATTGAGCGTATTCTAAA 58.106 37.500 0.00 0.00 0.00 1.85
167 168 5.975344 TGACCGTATTGAGCGTATTCTAAAG 59.025 40.000 0.00 0.00 0.00 1.85
168 169 5.899299 ACCGTATTGAGCGTATTCTAAAGT 58.101 37.500 0.00 0.00 0.00 2.66
169 170 5.975939 ACCGTATTGAGCGTATTCTAAAGTC 59.024 40.000 0.00 0.00 0.00 3.01
170 171 5.401674 CCGTATTGAGCGTATTCTAAAGTCC 59.598 44.000 0.00 0.00 0.00 3.85
171 172 5.975344 CGTATTGAGCGTATTCTAAAGTCCA 59.025 40.000 0.00 0.00 0.00 4.02
172 173 6.142480 CGTATTGAGCGTATTCTAAAGTCCAG 59.858 42.308 0.00 0.00 0.00 3.86
173 174 5.401531 TTGAGCGTATTCTAAAGTCCAGT 57.598 39.130 0.00 0.00 0.00 4.00
174 175 4.744570 TGAGCGTATTCTAAAGTCCAGTG 58.255 43.478 0.00 0.00 0.00 3.66
175 176 4.461431 TGAGCGTATTCTAAAGTCCAGTGA 59.539 41.667 0.00 0.00 0.00 3.41
176 177 4.745649 AGCGTATTCTAAAGTCCAGTGAC 58.254 43.478 0.00 0.00 42.09 3.67
188 189 4.457834 GTCCAGTGACTGTACTATGCTT 57.542 45.455 12.15 0.00 38.53 3.91
189 190 4.822026 GTCCAGTGACTGTACTATGCTTT 58.178 43.478 12.15 0.00 38.53 3.51
190 191 4.865365 GTCCAGTGACTGTACTATGCTTTC 59.135 45.833 12.15 0.00 38.53 2.62
191 192 4.526650 TCCAGTGACTGTACTATGCTTTCA 59.473 41.667 12.15 0.00 0.00 2.69
192 193 4.627467 CCAGTGACTGTACTATGCTTTCAC 59.373 45.833 12.15 0.00 33.57 3.18
193 194 4.627467 CAGTGACTGTACTATGCTTTCACC 59.373 45.833 4.01 0.00 33.81 4.02
194 195 4.528596 AGTGACTGTACTATGCTTTCACCT 59.471 41.667 0.00 0.00 33.81 4.00
195 196 4.865365 GTGACTGTACTATGCTTTCACCTC 59.135 45.833 0.00 0.00 0.00 3.85
196 197 4.526650 TGACTGTACTATGCTTTCACCTCA 59.473 41.667 0.00 0.00 0.00 3.86
197 198 5.011635 TGACTGTACTATGCTTTCACCTCAA 59.988 40.000 0.00 0.00 0.00 3.02
198 199 5.238583 ACTGTACTATGCTTTCACCTCAAC 58.761 41.667 0.00 0.00 0.00 3.18
199 200 5.012148 ACTGTACTATGCTTTCACCTCAACT 59.988 40.000 0.00 0.00 0.00 3.16
200 201 5.865085 TGTACTATGCTTTCACCTCAACTT 58.135 37.500 0.00 0.00 0.00 2.66
201 202 6.296026 TGTACTATGCTTTCACCTCAACTTT 58.704 36.000 0.00 0.00 0.00 2.66
202 203 7.446769 TGTACTATGCTTTCACCTCAACTTTA 58.553 34.615 0.00 0.00 0.00 1.85
203 204 7.602644 TGTACTATGCTTTCACCTCAACTTTAG 59.397 37.037 0.00 0.00 0.00 1.85
204 205 6.534634 ACTATGCTTTCACCTCAACTTTAGT 58.465 36.000 0.00 0.00 0.00 2.24
205 206 5.695851 ATGCTTTCACCTCAACTTTAGTG 57.304 39.130 0.00 0.00 0.00 2.74
206 207 4.776349 TGCTTTCACCTCAACTTTAGTGA 58.224 39.130 0.00 0.00 37.46 3.41
207 208 4.574828 TGCTTTCACCTCAACTTTAGTGAC 59.425 41.667 0.00 0.00 38.88 3.67
208 209 4.023963 GCTTTCACCTCAACTTTAGTGACC 60.024 45.833 0.00 0.00 38.88 4.02
209 210 4.764050 TTCACCTCAACTTTAGTGACCA 57.236 40.909 0.00 0.00 38.88 4.02
210 211 4.067972 TCACCTCAACTTTAGTGACCAC 57.932 45.455 0.00 0.00 34.44 4.16
211 212 3.452990 TCACCTCAACTTTAGTGACCACA 59.547 43.478 2.78 0.00 34.44 4.17
212 213 4.080807 TCACCTCAACTTTAGTGACCACAA 60.081 41.667 2.78 0.00 34.44 3.33
213 214 4.273480 CACCTCAACTTTAGTGACCACAAG 59.727 45.833 2.78 1.45 31.79 3.16
214 215 4.080526 ACCTCAACTTTAGTGACCACAAGT 60.081 41.667 2.78 2.05 31.45 3.16
215 216 4.273480 CCTCAACTTTAGTGACCACAAGTG 59.727 45.833 2.78 0.00 30.87 3.16
216 217 3.625764 TCAACTTTAGTGACCACAAGTGC 59.374 43.478 2.78 0.00 30.87 4.40
217 218 3.275617 ACTTTAGTGACCACAAGTGCA 57.724 42.857 2.78 0.00 29.76 4.57
218 219 3.820557 ACTTTAGTGACCACAAGTGCAT 58.179 40.909 2.78 0.00 29.76 3.96
219 220 4.207165 ACTTTAGTGACCACAAGTGCATT 58.793 39.130 2.78 0.00 29.76 3.56
220 221 4.644685 ACTTTAGTGACCACAAGTGCATTT 59.355 37.500 2.78 0.00 29.76 2.32
221 222 5.825679 ACTTTAGTGACCACAAGTGCATTTA 59.174 36.000 2.78 0.00 29.76 1.40
222 223 6.490040 ACTTTAGTGACCACAAGTGCATTTAT 59.510 34.615 2.78 0.00 29.76 1.40
223 224 6.494893 TTAGTGACCACAAGTGCATTTATC 57.505 37.500 2.78 0.00 0.00 1.75
224 225 4.655963 AGTGACCACAAGTGCATTTATCT 58.344 39.130 2.78 0.00 0.00 1.98
225 226 4.697352 AGTGACCACAAGTGCATTTATCTC 59.303 41.667 2.78 0.00 0.00 2.75
226 227 4.455533 GTGACCACAAGTGCATTTATCTCA 59.544 41.667 0.00 0.00 0.00 3.27
227 228 5.124457 GTGACCACAAGTGCATTTATCTCAT 59.876 40.000 0.00 0.00 0.00 2.90
228 229 5.711506 TGACCACAAGTGCATTTATCTCATT 59.288 36.000 0.00 0.00 0.00 2.57
229 230 6.209192 TGACCACAAGTGCATTTATCTCATTT 59.791 34.615 0.00 0.00 0.00 2.32
230 231 6.392354 ACCACAAGTGCATTTATCTCATTTG 58.608 36.000 0.00 0.00 34.80 2.32
231 232 6.209192 ACCACAAGTGCATTTATCTCATTTGA 59.791 34.615 0.00 0.00 33.49 2.69
232 233 7.092079 CCACAAGTGCATTTATCTCATTTGAA 58.908 34.615 0.00 0.00 33.49 2.69
233 234 7.762615 CCACAAGTGCATTTATCTCATTTGAAT 59.237 33.333 0.00 0.00 33.49 2.57
234 235 9.791820 CACAAGTGCATTTATCTCATTTGAATA 57.208 29.630 0.00 0.00 33.49 1.75
237 238 9.807649 AAGTGCATTTATCTCATTTGAATAACC 57.192 29.630 0.00 0.00 0.00 2.85
238 239 9.193806 AGTGCATTTATCTCATTTGAATAACCT 57.806 29.630 0.00 0.00 0.00 3.50
254 255 9.959749 TTGAATAACCTATTTTCACTTTCACAC 57.040 29.630 0.00 0.00 0.00 3.82
255 256 8.573035 TGAATAACCTATTTTCACTTTCACACC 58.427 33.333 0.00 0.00 0.00 4.16
256 257 5.432885 AACCTATTTTCACTTTCACACCG 57.567 39.130 0.00 0.00 0.00 4.94
257 258 4.710324 ACCTATTTTCACTTTCACACCGA 58.290 39.130 0.00 0.00 0.00 4.69
281 282 1.708341 AAAGGAAGCAACATGGCAGT 58.292 45.000 0.00 0.00 35.83 4.40
285 286 0.665369 GAAGCAACATGGCAGTGTGC 60.665 55.000 10.17 10.17 44.08 4.57
286 287 2.410638 AAGCAACATGGCAGTGTGCG 62.411 55.000 11.81 5.04 46.21 5.34
310 311 4.106029 ACTTTTAGCGTAGATGAAGCGA 57.894 40.909 0.00 0.00 37.65 4.93
321 322 2.814336 AGATGAAGCGAGGGTTGTTTTC 59.186 45.455 0.00 0.00 0.00 2.29
322 323 2.341846 TGAAGCGAGGGTTGTTTTCT 57.658 45.000 0.00 0.00 0.00 2.52
323 324 3.478857 TGAAGCGAGGGTTGTTTTCTA 57.521 42.857 0.00 0.00 0.00 2.10
327 328 3.081804 AGCGAGGGTTGTTTTCTATTGG 58.918 45.455 0.00 0.00 0.00 3.16
343 344 0.963962 TTGGTCTCGCCGACTTACTT 59.036 50.000 4.98 0.00 42.44 2.24
354 355 3.813724 GCCGACTTACTTCAAAACCTCTT 59.186 43.478 0.00 0.00 0.00 2.85
362 363 5.890424 ACTTCAAAACCTCTTTGAAACGA 57.110 34.783 12.31 0.00 44.67 3.85
371 372 3.363178 CTCTTTGAAACGAGGTGCAAAC 58.637 45.455 0.00 0.00 0.00 2.93
376 377 3.280295 TGAAACGAGGTGCAAACCTTAA 58.720 40.909 0.00 0.00 40.86 1.85
382 383 3.005367 CGAGGTGCAAACCTTAAAACCAT 59.995 43.478 0.00 0.00 40.86 3.55
386 387 4.443598 GGTGCAAACCTTAAAACCATCCAA 60.444 41.667 0.00 0.00 0.00 3.53
389 390 6.262049 GTGCAAACCTTAAAACCATCCAATTT 59.738 34.615 0.00 0.00 0.00 1.82
400 401 7.733402 AAACCATCCAATTTTGTTGAATCAG 57.267 32.000 0.00 0.00 0.00 2.90
431 432 1.112315 AGAGTATGGGCAGGCGAGAG 61.112 60.000 0.00 0.00 0.00 3.20
433 434 0.687757 AGTATGGGCAGGCGAGAGAA 60.688 55.000 0.00 0.00 0.00 2.87
443 444 3.553917 GCAGGCGAGAGAAGATTTCTTAC 59.446 47.826 0.00 0.00 40.87 2.34
445 446 4.564769 CAGGCGAGAGAAGATTTCTTACAC 59.435 45.833 0.00 0.00 40.87 2.90
446 447 4.220821 AGGCGAGAGAAGATTTCTTACACA 59.779 41.667 0.00 0.00 40.87 3.72
456 457 9.730705 AGAAGATTTCTTACACAGATGATTCAA 57.269 29.630 0.00 0.00 36.36 2.69
466 467 7.531280 ACACAGATGATTCAATCTACTTTCG 57.469 36.000 0.00 0.00 35.09 3.46
467 468 7.099764 ACACAGATGATTCAATCTACTTTCGT 58.900 34.615 0.00 0.00 35.09 3.85
468 469 7.276658 ACACAGATGATTCAATCTACTTTCGTC 59.723 37.037 0.00 0.00 35.09 4.20
469 470 6.758886 ACAGATGATTCAATCTACTTTCGTCC 59.241 38.462 0.00 0.00 35.09 4.79
470 471 6.983307 CAGATGATTCAATCTACTTTCGTCCT 59.017 38.462 0.00 0.00 35.09 3.85
471 472 6.983307 AGATGATTCAATCTACTTTCGTCCTG 59.017 38.462 0.00 0.00 35.09 3.86
472 473 6.037786 TGATTCAATCTACTTTCGTCCTGT 57.962 37.500 0.00 0.00 0.00 4.00
473 474 6.464222 TGATTCAATCTACTTTCGTCCTGTT 58.536 36.000 0.00 0.00 0.00 3.16
485 486 5.750352 TTCGTCCTGTTTATTAGTCCCTT 57.250 39.130 0.00 0.00 0.00 3.95
489 490 5.704053 CGTCCTGTTTATTAGTCCCTTTTGT 59.296 40.000 0.00 0.00 0.00 2.83
499 500 6.904463 TTAGTCCCTTTTGTATTTTGGGTC 57.096 37.500 0.00 0.00 38.95 4.46
532 533 7.706100 ACCTTTGACTTAACTACCAAAAACA 57.294 32.000 0.00 0.00 0.00 2.83
548 549 8.344446 ACCAAAAACATAAGTTCTATACCACC 57.656 34.615 0.00 0.00 36.84 4.61
565 566 5.168647 ACCACCAAAATAGTACCATCGAA 57.831 39.130 0.00 0.00 0.00 3.71
566 567 5.562635 ACCACCAAAATAGTACCATCGAAA 58.437 37.500 0.00 0.00 0.00 3.46
567 568 6.005198 ACCACCAAAATAGTACCATCGAAAA 58.995 36.000 0.00 0.00 0.00 2.29
568 569 6.072342 ACCACCAAAATAGTACCATCGAAAAC 60.072 38.462 0.00 0.00 0.00 2.43
569 570 6.319399 CACCAAAATAGTACCATCGAAAACC 58.681 40.000 0.00 0.00 0.00 3.27
570 571 6.150474 CACCAAAATAGTACCATCGAAAACCT 59.850 38.462 0.00 0.00 0.00 3.50
571 572 6.717997 ACCAAAATAGTACCATCGAAAACCTT 59.282 34.615 0.00 0.00 0.00 3.50
574 575 9.471084 CAAAATAGTACCATCGAAAACCTTTTT 57.529 29.630 0.00 0.00 0.00 1.94
622 623 9.567848 AACTTTTGTGACATACTGTTTTACTTG 57.432 29.630 0.00 0.00 0.00 3.16
623 624 8.188139 ACTTTTGTGACATACTGTTTTACTTGG 58.812 33.333 0.00 0.00 0.00 3.61
638 639 7.872993 TGTTTTACTTGGTTGTCAAATTTGTGA 59.127 29.630 17.47 3.20 34.56 3.58
645 646 7.912056 TGGTTGTCAAATTTGTGATCAAAAA 57.088 28.000 13.42 13.42 44.97 1.94
650 651 8.503458 TGTCAAATTTGTGATCAAAAATTGGT 57.497 26.923 29.03 16.60 44.97 3.67
677 678 6.644248 AAATATAAAGATGCCCCGTAAACC 57.356 37.500 0.00 0.00 0.00 3.27
678 679 3.655615 ATAAAGATGCCCCGTAAACCA 57.344 42.857 0.00 0.00 0.00 3.67
680 681 1.541379 AAGATGCCCCGTAAACCAAC 58.459 50.000 0.00 0.00 0.00 3.77
711 738 7.724951 AGGTAGTACTACAAGAATAGGTGGATC 59.275 40.741 29.38 10.12 37.78 3.36
730 934 7.809806 GGTGGATCTAAAAAGAAATGACACTTG 59.190 37.037 0.00 0.00 0.00 3.16
741 945 3.623906 ATGACACTTGGTGGATCTCAG 57.376 47.619 2.75 0.00 37.94 3.35
749 953 4.533707 ACTTGGTGGATCTCAGATTCTCAA 59.466 41.667 0.00 0.00 0.00 3.02
876 1087 2.125552 TCACCAATCGCGAGGCAG 60.126 61.111 16.66 7.97 0.00 4.85
907 1118 0.179018 GCCCTTCCGCCACATAAGAT 60.179 55.000 0.00 0.00 0.00 2.40
1870 2084 0.912006 GTCCTTCCTGAGGCCCTTCT 60.912 60.000 0.00 0.00 45.87 2.85
2337 2551 4.593864 GACGATGAGGAGGCCGCC 62.594 72.222 19.43 19.43 0.00 6.13
2370 2584 1.681793 CGGGAAGAGGAATTCGAGCTA 59.318 52.381 0.00 0.00 0.00 3.32
2393 2607 6.949578 ATGAACATTTGTAATTTTCCGCAG 57.050 33.333 0.00 0.00 0.00 5.18
2431 2647 5.509716 CAATTGCCATGATTGCTCTCTTA 57.490 39.130 0.00 0.00 0.00 2.10
2546 2764 4.445699 CCGCAGGCCTGTAAGATC 57.554 61.111 32.81 14.72 46.14 2.75
2577 2795 3.846588 TCCTCTTCCCTTGTAGCTTCAAT 59.153 43.478 6.21 0.00 0.00 2.57
2659 2877 8.250332 TGAAAAGTGCATAGGGAATTAATTGAC 58.750 33.333 5.17 0.00 0.00 3.18
2662 2880 6.194235 AGTGCATAGGGAATTAATTGACCAA 58.806 36.000 16.69 3.22 0.00 3.67
2670 2888 7.007723 AGGGAATTAATTGACCAAGTGTTACA 58.992 34.615 16.69 0.00 0.00 2.41
2748 2969 3.760151 TCTTTGACCATTGCTGATCCTTG 59.240 43.478 0.00 0.00 0.00 3.61
2757 2978 2.229792 TGCTGATCCTTGTGTTTGTCC 58.770 47.619 0.00 0.00 0.00 4.02
2764 2985 3.876341 TCCTTGTGTTTGTCCGTTAACT 58.124 40.909 3.71 0.00 0.00 2.24
2780 3004 5.082059 CGTTAACTCAACTTGATGTGATGC 58.918 41.667 3.71 0.00 34.77 3.91
2781 3005 5.106948 CGTTAACTCAACTTGATGTGATGCT 60.107 40.000 3.71 0.00 34.77 3.79
2782 3006 4.761235 AACTCAACTTGATGTGATGCTG 57.239 40.909 0.00 0.00 0.00 4.41
2850 3076 7.647827 TCATTTATGGGTTATCCTCCTTTTCA 58.352 34.615 0.00 0.00 36.20 2.69
2859 3085 7.872993 GGGTTATCCTCCTTTTCAAAGAAAAAG 59.127 37.037 6.41 3.32 43.02 2.27
2899 3125 5.099042 TCTAATTGCAAACTACTCCCTCC 57.901 43.478 1.71 0.00 0.00 4.30
2906 3132 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2911 3137 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
2926 3152 8.122952 GTCCCATAATACAAGATCGTTTTTCAG 58.877 37.037 0.00 0.00 0.00 3.02
2933 3159 2.633488 AGATCGTTTTTCAGGCTAGGC 58.367 47.619 8.55 8.55 0.00 3.93
2938 3164 2.673368 CGTTTTTCAGGCTAGGCAGTAG 59.327 50.000 19.70 5.45 0.00 2.57
2939 3165 3.010420 GTTTTTCAGGCTAGGCAGTAGG 58.990 50.000 19.70 2.54 0.00 3.18
2940 3166 2.247699 TTTCAGGCTAGGCAGTAGGA 57.752 50.000 19.70 4.92 0.00 2.94
2941 3167 2.247699 TTCAGGCTAGGCAGTAGGAA 57.752 50.000 19.70 10.51 0.00 3.36
2942 3168 2.247699 TCAGGCTAGGCAGTAGGAAA 57.752 50.000 19.70 0.00 0.00 3.13
2944 3170 3.923648 TCAGGCTAGGCAGTAGGAAATA 58.076 45.455 19.70 0.00 0.00 1.40
2945 3171 4.295201 TCAGGCTAGGCAGTAGGAAATAA 58.705 43.478 19.70 0.00 0.00 1.40
2948 3174 5.304614 CAGGCTAGGCAGTAGGAAATAAGTA 59.695 44.000 19.70 0.00 0.00 2.24
2949 3175 5.540719 AGGCTAGGCAGTAGGAAATAAGTAG 59.459 44.000 19.70 0.00 0.00 2.57
2951 3177 6.492772 GGCTAGGCAGTAGGAAATAAGTAGTA 59.507 42.308 12.16 0.00 0.00 1.82
2952 3178 7.369607 GCTAGGCAGTAGGAAATAAGTAGTAC 58.630 42.308 0.00 0.00 0.00 2.73
2955 3181 7.783042 AGGCAGTAGGAAATAAGTAGTACAAG 58.217 38.462 2.52 0.00 0.00 3.16
2956 3182 7.618512 AGGCAGTAGGAAATAAGTAGTACAAGA 59.381 37.037 2.52 0.00 0.00 3.02
2957 3183 8.422566 GGCAGTAGGAAATAAGTAGTACAAGAT 58.577 37.037 2.52 0.00 0.00 2.40
2958 3184 9.819267 GCAGTAGGAAATAAGTAGTACAAGATT 57.181 33.333 2.52 0.00 0.00 2.40
2961 3187 9.543783 GTAGGAAATAAGTAGTACAAGATTGGG 57.456 37.037 2.52 0.00 0.00 4.12
2962 3188 7.574607 AGGAAATAAGTAGTACAAGATTGGGG 58.425 38.462 2.52 0.00 0.00 4.96
2963 3189 7.404980 AGGAAATAAGTAGTACAAGATTGGGGA 59.595 37.037 2.52 0.00 0.00 4.81
2964 3190 8.050930 GGAAATAAGTAGTACAAGATTGGGGAA 58.949 37.037 2.52 0.00 0.00 3.97
2965 3191 9.457436 GAAATAAGTAGTACAAGATTGGGGAAA 57.543 33.333 2.52 0.00 0.00 3.13
2966 3192 9.816787 AAATAAGTAGTACAAGATTGGGGAAAA 57.183 29.630 2.52 0.00 0.00 2.29
2967 3193 9.816787 AATAAGTAGTACAAGATTGGGGAAAAA 57.183 29.630 2.52 0.00 0.00 1.94
2987 3213 6.676237 AAAAATGTTAACTGGGCAAACTTG 57.324 33.333 7.22 0.00 0.00 3.16
2988 3214 5.606348 AAATGTTAACTGGGCAAACTTGA 57.394 34.783 7.22 0.00 0.00 3.02
2989 3215 4.853924 ATGTTAACTGGGCAAACTTGAG 57.146 40.909 7.22 0.00 0.00 3.02
2990 3216 2.955660 TGTTAACTGGGCAAACTTGAGG 59.044 45.455 7.22 0.00 0.00 3.86
2994 3419 2.997315 GGGCAAACTTGAGGGGGC 60.997 66.667 0.00 0.00 0.00 5.80
3025 3450 3.584733 ACTTGAAGAGGAAAAGCCAGT 57.415 42.857 0.00 0.00 40.02 4.00
3026 3451 3.217626 ACTTGAAGAGGAAAAGCCAGTG 58.782 45.455 0.00 0.00 40.02 3.66
3027 3452 3.117888 ACTTGAAGAGGAAAAGCCAGTGA 60.118 43.478 0.00 0.00 40.02 3.41
3028 3453 2.851195 TGAAGAGGAAAAGCCAGTGAC 58.149 47.619 0.00 0.00 40.02 3.67
3029 3454 1.801178 GAAGAGGAAAAGCCAGTGACG 59.199 52.381 0.00 0.00 40.02 4.35
3052 3484 3.190118 GCTCCATGAAGAAAGGTCTGTTG 59.810 47.826 0.00 0.00 33.05 3.33
3066 4106 3.181465 GGTCTGTTGAAGGAGAACAGTCA 60.181 47.826 11.34 0.00 46.94 3.41
3093 4134 1.815003 CAGTGCCCTCAAACATCTTCC 59.185 52.381 0.00 0.00 0.00 3.46
3097 4138 1.408822 GCCCTCAAACATCTTCCGGAT 60.409 52.381 4.15 0.00 34.51 4.18
3108 4149 6.248569 ACATCTTCCGGATTAGGTGTAATT 57.751 37.500 18.54 0.00 34.09 1.40
3138 4179 3.982701 CAGATTTGCATTTCTGAAACGCA 59.017 39.130 18.61 18.61 41.53 5.24
3144 4185 2.409378 GCATTTCTGAAACGCATTGTGG 59.591 45.455 15.45 0.00 0.00 4.17
3188 4229 6.137794 TCGTGGAAACTAAAATGAAGCAAA 57.862 33.333 0.00 0.00 0.00 3.68
3193 4238 5.107875 GGAAACTAAAATGAAGCAAAGCACG 60.108 40.000 0.00 0.00 0.00 5.34
3201 4246 0.310854 AAGCAAAGCACGTTACTGGC 59.689 50.000 0.00 0.00 0.00 4.85
3245 4290 3.512033 TGGTACACAACTTTGTTTGGC 57.488 42.857 0.00 0.00 39.91 4.52
3288 4334 4.561500 TCCCGTTTCTGTTCCAATGATA 57.438 40.909 0.00 0.00 0.00 2.15
3311 4357 2.853705 AGCACCTAACGGCTTAAAACA 58.146 42.857 0.00 0.00 36.92 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.501723 GGTCCCATGTGTCAGTGAGTAT 59.498 50.000 0.00 0.00 0.00 2.12
1 2 1.899814 GGTCCCATGTGTCAGTGAGTA 59.100 52.381 0.00 0.00 0.00 2.59
2 3 0.687354 GGTCCCATGTGTCAGTGAGT 59.313 55.000 0.00 0.00 0.00 3.41
4 5 0.766288 TGGGTCCCATGTGTCAGTGA 60.766 55.000 6.47 0.00 0.00 3.41
5 6 0.329261 ATGGGTCCCATGTGTCAGTG 59.671 55.000 23.47 0.00 43.39 3.66
6 7 0.620556 GATGGGTCCCATGTGTCAGT 59.379 55.000 28.98 1.35 45.26 3.41
7 8 0.462581 CGATGGGTCCCATGTGTCAG 60.463 60.000 28.98 8.20 45.26 3.51
8 9 0.907230 TCGATGGGTCCCATGTGTCA 60.907 55.000 28.98 4.02 45.26 3.58
9 10 0.179073 CTCGATGGGTCCCATGTGTC 60.179 60.000 28.98 13.54 45.26 3.67
10 11 0.909610 ACTCGATGGGTCCCATGTGT 60.910 55.000 28.98 20.93 45.26 3.72
11 12 1.069204 CTACTCGATGGGTCCCATGTG 59.931 57.143 28.98 19.30 45.26 3.21
12 13 1.414158 CTACTCGATGGGTCCCATGT 58.586 55.000 28.98 20.89 45.26 3.21
13 14 0.681733 CCTACTCGATGGGTCCCATG 59.318 60.000 28.98 18.98 45.26 3.66
15 16 1.075525 CCCTACTCGATGGGTCCCA 60.076 63.158 14.64 14.64 38.65 4.37
16 17 1.114119 GTCCCTACTCGATGGGTCCC 61.114 65.000 15.13 0.00 43.74 4.46
17 18 0.396695 TGTCCCTACTCGATGGGTCC 60.397 60.000 15.13 9.54 43.74 4.46
18 19 0.745468 GTGTCCCTACTCGATGGGTC 59.255 60.000 15.13 11.49 43.74 4.46
19 20 0.040646 TGTGTCCCTACTCGATGGGT 59.959 55.000 15.13 0.20 43.74 4.51
20 21 0.460311 GTGTGTCCCTACTCGATGGG 59.540 60.000 10.89 10.89 44.66 4.00
21 22 1.135139 CTGTGTGTCCCTACTCGATGG 59.865 57.143 0.00 0.00 0.00 3.51
22 23 1.819288 ACTGTGTGTCCCTACTCGATG 59.181 52.381 0.00 0.00 0.00 3.84
23 24 1.819288 CACTGTGTGTCCCTACTCGAT 59.181 52.381 0.00 0.00 0.00 3.59
24 25 1.244816 CACTGTGTGTCCCTACTCGA 58.755 55.000 0.00 0.00 0.00 4.04
25 26 0.388649 GCACTGTGTGTCCCTACTCG 60.389 60.000 9.86 0.00 35.75 4.18
26 27 0.388649 CGCACTGTGTGTCCCTACTC 60.389 60.000 13.01 0.00 35.75 2.59
27 28 1.666011 CGCACTGTGTGTCCCTACT 59.334 57.895 13.01 0.00 35.75 2.57
28 29 1.374252 CCGCACTGTGTGTCCCTAC 60.374 63.158 18.94 0.00 35.75 3.18
29 30 1.812686 GACCGCACTGTGTGTCCCTA 61.813 60.000 18.94 0.00 35.75 3.53
30 31 3.161450 ACCGCACTGTGTGTCCCT 61.161 61.111 18.94 0.00 35.75 4.20
31 32 2.665185 GACCGCACTGTGTGTCCC 60.665 66.667 18.94 5.12 35.75 4.46
32 33 1.812686 TAGGACCGCACTGTGTGTCC 61.813 60.000 28.84 28.84 35.75 4.02
33 34 0.032952 TTAGGACCGCACTGTGTGTC 59.967 55.000 18.94 18.57 35.75 3.67
34 35 0.033504 CTTAGGACCGCACTGTGTGT 59.966 55.000 18.94 11.92 35.75 3.72
35 36 0.033504 ACTTAGGACCGCACTGTGTG 59.966 55.000 14.19 14.19 36.51 3.82
36 37 0.033504 CACTTAGGACCGCACTGTGT 59.966 55.000 9.86 0.00 0.00 3.72
37 38 0.670546 CCACTTAGGACCGCACTGTG 60.671 60.000 2.76 2.76 41.22 3.66
38 39 1.671742 CCACTTAGGACCGCACTGT 59.328 57.895 0.00 0.00 41.22 3.55
39 40 1.741770 GCCACTTAGGACCGCACTG 60.742 63.158 0.00 0.00 41.22 3.66
40 41 1.764571 TTGCCACTTAGGACCGCACT 61.765 55.000 0.00 0.00 41.22 4.40
41 42 1.298859 CTTGCCACTTAGGACCGCAC 61.299 60.000 0.00 0.00 41.22 5.34
42 43 1.003839 CTTGCCACTTAGGACCGCA 60.004 57.895 0.00 0.00 41.22 5.69
43 44 0.248289 TACTTGCCACTTAGGACCGC 59.752 55.000 0.00 0.00 41.22 5.68
44 45 2.754946 TTACTTGCCACTTAGGACCG 57.245 50.000 0.00 0.00 41.22 4.79
45 46 5.977489 AATTTTACTTGCCACTTAGGACC 57.023 39.130 0.00 0.00 41.22 4.46
46 47 6.861572 GTCAAATTTTACTTGCCACTTAGGAC 59.138 38.462 0.00 0.00 41.22 3.85
47 48 6.015772 GGTCAAATTTTACTTGCCACTTAGGA 60.016 38.462 2.71 0.00 41.22 2.94
48 49 6.156519 GGTCAAATTTTACTTGCCACTTAGG 58.843 40.000 2.71 0.00 41.84 2.69
49 50 5.856455 CGGTCAAATTTTACTTGCCACTTAG 59.144 40.000 2.71 0.00 0.00 2.18
50 51 5.278561 CCGGTCAAATTTTACTTGCCACTTA 60.279 40.000 0.00 0.00 0.00 2.24
51 52 4.500716 CCGGTCAAATTTTACTTGCCACTT 60.501 41.667 0.00 0.00 0.00 3.16
52 53 3.005367 CCGGTCAAATTTTACTTGCCACT 59.995 43.478 0.00 0.00 0.00 4.00
53 54 3.243602 ACCGGTCAAATTTTACTTGCCAC 60.244 43.478 0.00 0.00 0.00 5.01
54 55 2.959707 ACCGGTCAAATTTTACTTGCCA 59.040 40.909 0.00 0.00 0.00 4.92
55 56 3.004944 TGACCGGTCAAATTTTACTTGCC 59.995 43.478 34.60 3.09 36.53 4.52
56 57 4.231718 TGACCGGTCAAATTTTACTTGC 57.768 40.909 34.60 3.82 36.53 4.01
67 68 7.110810 TGTATTTTATATGGTTGACCGGTCAA 58.889 34.615 39.59 39.59 46.27 3.18
68 69 6.651086 TGTATTTTATATGGTTGACCGGTCA 58.349 36.000 33.23 33.23 39.43 4.02
69 70 7.556733 TTGTATTTTATATGGTTGACCGGTC 57.443 36.000 28.17 28.17 39.43 4.79
70 71 7.469456 GCATTGTATTTTATATGGTTGACCGGT 60.469 37.037 6.92 6.92 39.43 5.28
71 72 6.861055 GCATTGTATTTTATATGGTTGACCGG 59.139 38.462 0.00 0.00 39.43 5.28
72 73 7.648142 AGCATTGTATTTTATATGGTTGACCG 58.352 34.615 0.00 0.00 39.43 4.79
78 79 9.953565 ACCGTATAGCATTGTATTTTATATGGT 57.046 29.630 7.54 7.54 39.78 3.55
83 84 9.162764 GGATCACCGTATAGCATTGTATTTTAT 57.837 33.333 0.00 0.00 0.00 1.40
84 85 8.151596 TGGATCACCGTATAGCATTGTATTTTA 58.848 33.333 0.00 0.00 39.42 1.52
85 86 6.995686 TGGATCACCGTATAGCATTGTATTTT 59.004 34.615 0.00 0.00 39.42 1.82
86 87 6.530120 TGGATCACCGTATAGCATTGTATTT 58.470 36.000 0.00 0.00 39.42 1.40
87 88 6.109156 TGGATCACCGTATAGCATTGTATT 57.891 37.500 0.00 0.00 39.42 1.89
88 89 5.246203 ACTGGATCACCGTATAGCATTGTAT 59.754 40.000 0.00 0.00 39.42 2.29
89 90 4.587262 ACTGGATCACCGTATAGCATTGTA 59.413 41.667 0.00 0.00 39.42 2.41
90 91 3.388024 ACTGGATCACCGTATAGCATTGT 59.612 43.478 0.00 0.00 39.42 2.71
91 92 3.742882 CACTGGATCACCGTATAGCATTG 59.257 47.826 0.00 0.00 39.42 2.82
92 93 3.641436 TCACTGGATCACCGTATAGCATT 59.359 43.478 0.00 0.00 39.42 3.56
93 94 3.005897 GTCACTGGATCACCGTATAGCAT 59.994 47.826 0.00 0.00 39.42 3.79
94 95 2.361119 GTCACTGGATCACCGTATAGCA 59.639 50.000 0.00 0.00 39.42 3.49
95 96 2.288273 GGTCACTGGATCACCGTATAGC 60.288 54.545 0.00 0.00 39.42 2.97
96 97 2.031069 CGGTCACTGGATCACCGTATAG 60.031 54.545 12.20 0.00 46.58 1.31
97 98 1.951602 CGGTCACTGGATCACCGTATA 59.048 52.381 12.20 0.00 46.58 1.47
98 99 0.744874 CGGTCACTGGATCACCGTAT 59.255 55.000 12.20 0.00 46.58 3.06
99 100 2.186155 CGGTCACTGGATCACCGTA 58.814 57.895 12.20 0.00 46.58 4.02
100 101 2.970639 CGGTCACTGGATCACCGT 59.029 61.111 12.20 0.00 46.58 4.83
102 103 4.038763 TGATTATACGGTCACTGGATCACC 59.961 45.833 0.00 0.00 0.00 4.02
103 104 5.196341 TGATTATACGGTCACTGGATCAC 57.804 43.478 0.00 0.00 0.00 3.06
104 105 5.335661 CGATGATTATACGGTCACTGGATCA 60.336 44.000 0.00 0.00 0.00 2.92
105 106 5.096169 CGATGATTATACGGTCACTGGATC 58.904 45.833 0.00 0.00 0.00 3.36
106 107 4.618460 GCGATGATTATACGGTCACTGGAT 60.618 45.833 0.00 0.00 0.00 3.41
107 108 3.305131 GCGATGATTATACGGTCACTGGA 60.305 47.826 0.00 0.00 0.00 3.86
108 109 2.987149 GCGATGATTATACGGTCACTGG 59.013 50.000 0.00 0.00 0.00 4.00
109 110 3.638484 TGCGATGATTATACGGTCACTG 58.362 45.455 0.00 0.00 0.00 3.66
110 111 4.049186 GTTGCGATGATTATACGGTCACT 58.951 43.478 0.00 0.00 0.00 3.41
111 112 4.049186 AGTTGCGATGATTATACGGTCAC 58.951 43.478 0.00 0.00 0.00 3.67
112 113 4.295870 GAGTTGCGATGATTATACGGTCA 58.704 43.478 0.00 0.00 0.00 4.02
113 114 3.361053 CGAGTTGCGATGATTATACGGTC 59.639 47.826 0.00 0.00 44.57 4.79
114 115 3.243301 ACGAGTTGCGATGATTATACGGT 60.243 43.478 0.00 0.00 44.57 4.83
115 116 3.305964 ACGAGTTGCGATGATTATACGG 58.694 45.455 0.00 0.00 44.57 4.02
116 117 6.612855 AATACGAGTTGCGATGATTATACG 57.387 37.500 0.00 0.00 44.57 3.06
119 120 9.203421 TCATTAAATACGAGTTGCGATGATTAT 57.797 29.630 0.00 0.00 44.57 1.28
120 121 8.484799 GTCATTAAATACGAGTTGCGATGATTA 58.515 33.333 0.00 0.00 44.57 1.75
121 122 7.345192 GTCATTAAATACGAGTTGCGATGATT 58.655 34.615 0.00 0.00 44.57 2.57
122 123 6.073765 GGTCATTAAATACGAGTTGCGATGAT 60.074 38.462 0.00 0.00 44.57 2.45
123 124 5.233476 GGTCATTAAATACGAGTTGCGATGA 59.767 40.000 0.00 0.00 44.57 2.92
124 125 5.432157 GGTCATTAAATACGAGTTGCGATG 58.568 41.667 0.00 0.00 44.57 3.84
125 126 4.208460 CGGTCATTAAATACGAGTTGCGAT 59.792 41.667 0.00 0.00 44.57 4.58
126 127 3.548668 CGGTCATTAAATACGAGTTGCGA 59.451 43.478 0.00 0.00 44.57 5.10
128 129 4.852609 ACGGTCATTAAATACGAGTTGC 57.147 40.909 0.00 0.00 0.00 4.17
129 130 8.122306 TCAATACGGTCATTAAATACGAGTTG 57.878 34.615 0.00 0.00 0.00 3.16
130 131 7.042925 GCTCAATACGGTCATTAAATACGAGTT 60.043 37.037 0.00 0.00 0.00 3.01
131 132 6.420008 GCTCAATACGGTCATTAAATACGAGT 59.580 38.462 0.00 0.00 0.00 4.18
132 133 6.398621 CGCTCAATACGGTCATTAAATACGAG 60.399 42.308 0.00 0.00 0.00 4.18
133 134 5.400188 CGCTCAATACGGTCATTAAATACGA 59.600 40.000 0.00 0.00 0.00 3.43
134 135 5.174398 ACGCTCAATACGGTCATTAAATACG 59.826 40.000 0.00 0.00 34.00 3.06
135 136 6.520792 ACGCTCAATACGGTCATTAAATAC 57.479 37.500 0.00 0.00 34.00 1.89
136 137 8.821147 AATACGCTCAATACGGTCATTAAATA 57.179 30.769 0.00 0.00 34.00 1.40
137 138 7.656137 AGAATACGCTCAATACGGTCATTAAAT 59.344 33.333 0.00 0.00 34.00 1.40
138 139 6.982141 AGAATACGCTCAATACGGTCATTAAA 59.018 34.615 0.00 0.00 34.00 1.52
139 140 6.509656 AGAATACGCTCAATACGGTCATTAA 58.490 36.000 0.00 0.00 34.00 1.40
140 141 6.080648 AGAATACGCTCAATACGGTCATTA 57.919 37.500 0.00 0.00 34.00 1.90
141 142 4.945246 AGAATACGCTCAATACGGTCATT 58.055 39.130 0.00 0.00 34.00 2.57
142 143 4.585955 AGAATACGCTCAATACGGTCAT 57.414 40.909 0.00 0.00 34.00 3.06
143 144 5.503662 TTAGAATACGCTCAATACGGTCA 57.496 39.130 0.00 0.00 34.00 4.02
144 145 5.975939 ACTTTAGAATACGCTCAATACGGTC 59.024 40.000 0.00 0.00 34.00 4.79
145 146 5.899299 ACTTTAGAATACGCTCAATACGGT 58.101 37.500 0.00 0.00 34.00 4.83
146 147 5.401674 GGACTTTAGAATACGCTCAATACGG 59.598 44.000 0.00 0.00 34.00 4.02
147 148 5.975344 TGGACTTTAGAATACGCTCAATACG 59.025 40.000 0.00 0.00 0.00 3.06
148 149 6.979238 ACTGGACTTTAGAATACGCTCAATAC 59.021 38.462 0.00 0.00 0.00 1.89
149 150 6.978659 CACTGGACTTTAGAATACGCTCAATA 59.021 38.462 0.00 0.00 0.00 1.90
150 151 5.812642 CACTGGACTTTAGAATACGCTCAAT 59.187 40.000 0.00 0.00 0.00 2.57
151 152 5.047590 TCACTGGACTTTAGAATACGCTCAA 60.048 40.000 0.00 0.00 0.00 3.02
152 153 4.461431 TCACTGGACTTTAGAATACGCTCA 59.539 41.667 0.00 0.00 0.00 4.26
153 154 4.799428 GTCACTGGACTTTAGAATACGCTC 59.201 45.833 0.00 0.00 40.99 5.03
154 155 4.745649 GTCACTGGACTTTAGAATACGCT 58.254 43.478 0.00 0.00 40.99 5.07
167 168 4.457834 AAGCATAGTACAGTCACTGGAC 57.542 45.455 12.86 12.86 45.06 4.02
168 169 4.526650 TGAAAGCATAGTACAGTCACTGGA 59.473 41.667 10.28 0.00 35.51 3.86
169 170 4.627467 GTGAAAGCATAGTACAGTCACTGG 59.373 45.833 10.28 0.00 35.51 4.00
170 171 4.627467 GGTGAAAGCATAGTACAGTCACTG 59.373 45.833 2.22 2.22 35.40 3.66
171 172 4.528596 AGGTGAAAGCATAGTACAGTCACT 59.471 41.667 0.00 0.00 36.26 3.41
172 173 4.822026 AGGTGAAAGCATAGTACAGTCAC 58.178 43.478 0.00 0.00 36.26 3.67
173 174 4.526650 TGAGGTGAAAGCATAGTACAGTCA 59.473 41.667 0.00 0.00 36.26 3.41
174 175 5.073311 TGAGGTGAAAGCATAGTACAGTC 57.927 43.478 0.00 0.00 36.26 3.51
175 176 5.012148 AGTTGAGGTGAAAGCATAGTACAGT 59.988 40.000 0.00 0.00 36.26 3.55
176 177 5.482908 AGTTGAGGTGAAAGCATAGTACAG 58.517 41.667 0.00 0.00 36.26 2.74
177 178 5.483685 AGTTGAGGTGAAAGCATAGTACA 57.516 39.130 0.00 0.00 36.26 2.90
178 179 6.803154 AAAGTTGAGGTGAAAGCATAGTAC 57.197 37.500 0.00 0.00 36.26 2.73
179 180 7.602644 CACTAAAGTTGAGGTGAAAGCATAGTA 59.397 37.037 0.00 0.00 36.26 1.82
180 181 6.428159 CACTAAAGTTGAGGTGAAAGCATAGT 59.572 38.462 0.00 0.00 36.26 2.12
181 182 6.650807 TCACTAAAGTTGAGGTGAAAGCATAG 59.349 38.462 0.00 0.00 36.04 2.23
182 183 6.426937 GTCACTAAAGTTGAGGTGAAAGCATA 59.573 38.462 7.19 0.00 39.83 3.14
183 184 5.239525 GTCACTAAAGTTGAGGTGAAAGCAT 59.760 40.000 7.19 0.00 39.83 3.79
184 185 4.574828 GTCACTAAAGTTGAGGTGAAAGCA 59.425 41.667 7.19 0.00 39.83 3.91
185 186 4.023963 GGTCACTAAAGTTGAGGTGAAAGC 60.024 45.833 7.19 0.00 39.83 3.51
186 187 5.007724 GTGGTCACTAAAGTTGAGGTGAAAG 59.992 44.000 7.19 0.00 39.83 2.62
187 188 4.879545 GTGGTCACTAAAGTTGAGGTGAAA 59.120 41.667 7.19 0.00 39.83 2.69
188 189 4.080807 TGTGGTCACTAAAGTTGAGGTGAA 60.081 41.667 2.66 0.00 39.83 3.18
189 190 3.452990 TGTGGTCACTAAAGTTGAGGTGA 59.547 43.478 2.66 0.00 36.52 4.02
190 191 3.804036 TGTGGTCACTAAAGTTGAGGTG 58.196 45.455 2.66 0.00 0.00 4.00
191 192 4.080526 ACTTGTGGTCACTAAAGTTGAGGT 60.081 41.667 2.66 0.00 0.00 3.85
192 193 4.273480 CACTTGTGGTCACTAAAGTTGAGG 59.727 45.833 2.66 0.00 0.00 3.86
193 194 4.260784 GCACTTGTGGTCACTAAAGTTGAG 60.261 45.833 2.81 0.00 0.00 3.02
194 195 3.625764 GCACTTGTGGTCACTAAAGTTGA 59.374 43.478 2.81 0.00 0.00 3.18
195 196 3.376859 TGCACTTGTGGTCACTAAAGTTG 59.623 43.478 2.81 2.60 0.00 3.16
196 197 3.616219 TGCACTTGTGGTCACTAAAGTT 58.384 40.909 2.81 0.00 0.00 2.66
197 198 3.275617 TGCACTTGTGGTCACTAAAGT 57.724 42.857 2.81 2.45 0.00 2.66
198 199 4.836125 AATGCACTTGTGGTCACTAAAG 57.164 40.909 2.81 1.88 0.00 1.85
199 200 6.714810 AGATAAATGCACTTGTGGTCACTAAA 59.285 34.615 2.81 0.00 0.00 1.85
200 201 6.237901 AGATAAATGCACTTGTGGTCACTAA 58.762 36.000 2.81 0.00 0.00 2.24
201 202 5.804639 AGATAAATGCACTTGTGGTCACTA 58.195 37.500 2.81 0.00 0.00 2.74
202 203 4.655963 AGATAAATGCACTTGTGGTCACT 58.344 39.130 2.81 0.00 0.00 3.41
203 204 4.455533 TGAGATAAATGCACTTGTGGTCAC 59.544 41.667 2.81 0.00 0.00 3.67
204 205 4.650734 TGAGATAAATGCACTTGTGGTCA 58.349 39.130 2.81 0.00 0.00 4.02
205 206 5.824904 ATGAGATAAATGCACTTGTGGTC 57.175 39.130 2.81 0.00 0.00 4.02
206 207 6.209192 TCAAATGAGATAAATGCACTTGTGGT 59.791 34.615 2.81 0.00 0.00 4.16
207 208 6.623486 TCAAATGAGATAAATGCACTTGTGG 58.377 36.000 2.81 0.00 0.00 4.17
208 209 8.697846 ATTCAAATGAGATAAATGCACTTGTG 57.302 30.769 0.00 0.00 0.00 3.33
211 212 9.807649 GGTTATTCAAATGAGATAAATGCACTT 57.192 29.630 0.00 0.00 0.00 3.16
212 213 9.193806 AGGTTATTCAAATGAGATAAATGCACT 57.806 29.630 0.00 0.00 0.00 4.40
228 229 9.959749 GTGTGAAAGTGAAAATAGGTTATTCAA 57.040 29.630 0.00 0.00 35.07 2.69
229 230 8.573035 GGTGTGAAAGTGAAAATAGGTTATTCA 58.427 33.333 0.00 0.00 0.00 2.57
230 231 7.749126 CGGTGTGAAAGTGAAAATAGGTTATTC 59.251 37.037 0.00 0.00 0.00 1.75
231 232 7.446013 TCGGTGTGAAAGTGAAAATAGGTTATT 59.554 33.333 0.00 0.00 0.00 1.40
232 233 6.938030 TCGGTGTGAAAGTGAAAATAGGTTAT 59.062 34.615 0.00 0.00 0.00 1.89
233 234 6.289834 TCGGTGTGAAAGTGAAAATAGGTTA 58.710 36.000 0.00 0.00 0.00 2.85
234 235 5.127491 TCGGTGTGAAAGTGAAAATAGGTT 58.873 37.500 0.00 0.00 0.00 3.50
235 236 4.710324 TCGGTGTGAAAGTGAAAATAGGT 58.290 39.130 0.00 0.00 0.00 3.08
236 237 5.880054 ATCGGTGTGAAAGTGAAAATAGG 57.120 39.130 0.00 0.00 0.00 2.57
237 238 9.672086 TTTTTATCGGTGTGAAAGTGAAAATAG 57.328 29.630 0.00 0.00 0.00 1.73
271 272 1.072332 TACCGCACACTGCCATGTT 59.928 52.632 0.00 0.00 41.12 2.71
272 273 1.671054 GTACCGCACACTGCCATGT 60.671 57.895 0.00 0.00 41.12 3.21
273 274 0.955428 AAGTACCGCACACTGCCATG 60.955 55.000 0.00 0.00 41.12 3.66
274 275 0.250727 AAAGTACCGCACACTGCCAT 60.251 50.000 0.00 0.00 41.12 4.40
281 282 2.228582 TCTACGCTAAAAGTACCGCACA 59.771 45.455 0.00 0.00 0.00 4.57
285 286 4.206609 GCTTCATCTACGCTAAAAGTACCG 59.793 45.833 0.00 0.00 0.00 4.02
286 287 4.206609 CGCTTCATCTACGCTAAAAGTACC 59.793 45.833 0.00 0.00 0.00 3.34
310 311 4.324267 CGAGACCAATAGAAAACAACCCT 58.676 43.478 0.00 0.00 0.00 4.34
343 344 4.893424 CCTCGTTTCAAAGAGGTTTTGA 57.107 40.909 12.09 0.00 45.80 2.69
366 367 6.875948 AAATTGGATGGTTTTAAGGTTTGC 57.124 33.333 0.00 0.00 0.00 3.68
371 372 8.443953 TTCAACAAAATTGGATGGTTTTAAGG 57.556 30.769 0.00 0.00 0.00 2.69
376 377 7.507829 TCTGATTCAACAAAATTGGATGGTTT 58.492 30.769 0.00 0.00 0.00 3.27
382 383 4.588106 TGGCTCTGATTCAACAAAATTGGA 59.412 37.500 0.00 0.00 0.00 3.53
386 387 5.475719 CACATGGCTCTGATTCAACAAAAT 58.524 37.500 0.00 0.00 0.00 1.82
389 390 2.821378 CCACATGGCTCTGATTCAACAA 59.179 45.455 0.00 0.00 0.00 2.83
400 401 1.071385 CCATACTCTCCCACATGGCTC 59.929 57.143 0.00 0.00 32.12 4.70
433 434 9.902684 AGATTGAATCATCTGTGTAAGAAATCT 57.097 29.630 8.03 0.00 38.79 2.40
443 444 7.531280 ACGAAAGTAGATTGAATCATCTGTG 57.469 36.000 8.03 2.46 46.88 3.66
462 463 5.750352 AGGGACTAATAAACAGGACGAAA 57.250 39.130 0.00 0.00 36.02 3.46
464 465 5.750352 AAAGGGACTAATAAACAGGACGA 57.250 39.130 0.00 0.00 38.49 4.20
465 466 5.704053 ACAAAAGGGACTAATAAACAGGACG 59.296 40.000 0.00 0.00 38.49 4.79
466 467 8.803397 ATACAAAAGGGACTAATAAACAGGAC 57.197 34.615 0.00 0.00 38.49 3.85
467 468 9.816787 AAATACAAAAGGGACTAATAAACAGGA 57.183 29.630 0.00 0.00 38.49 3.86
471 472 9.647797 CCCAAAATACAAAAGGGACTAATAAAC 57.352 33.333 0.00 0.00 42.25 2.01
472 473 9.382307 ACCCAAAATACAAAAGGGACTAATAAA 57.618 29.630 2.29 0.00 42.25 1.40
473 474 8.959676 ACCCAAAATACAAAAGGGACTAATAA 57.040 30.769 2.29 0.00 42.25 1.40
485 486 8.541234 AGGTTAAAGTTTGACCCAAAATACAAA 58.459 29.630 22.32 0.00 35.03 2.83
489 490 8.759782 TCAAAGGTTAAAGTTTGACCCAAAATA 58.240 29.630 22.32 4.84 37.67 1.40
499 500 9.726232 GGTAGTTAAGTCAAAGGTTAAAGTTTG 57.274 33.333 0.00 4.95 35.38 2.93
524 525 8.343168 TGGTGGTATAGAACTTATGTTTTTGG 57.657 34.615 0.00 0.00 36.39 3.28
548 549 9.471084 AAAAAGGTTTTCGATGGTACTATTTTG 57.529 29.630 0.00 0.00 0.00 2.44
558 559 8.755696 TCATATTTGAAAAAGGTTTTCGATGG 57.244 30.769 8.49 4.22 0.00 3.51
565 566 9.844257 TGTTGGATTCATATTTGAAAAAGGTTT 57.156 25.926 2.59 0.00 44.70 3.27
566 567 9.844257 TTGTTGGATTCATATTTGAAAAAGGTT 57.156 25.926 2.59 0.00 44.70 3.50
567 568 9.844257 TTTGTTGGATTCATATTTGAAAAAGGT 57.156 25.926 2.59 0.00 44.70 3.50
612 613 7.872993 TCACAAATTTGACAACCAAGTAAAACA 59.127 29.630 24.64 0.00 35.94 2.83
613 614 8.245701 TCACAAATTTGACAACCAAGTAAAAC 57.754 30.769 24.64 0.00 35.94 2.43
619 620 7.536895 TTTGATCACAAATTTGACAACCAAG 57.463 32.000 24.64 4.27 40.47 3.61
622 623 9.224058 CAATTTTTGATCACAAATTTGACAACC 57.776 29.630 23.58 9.61 43.99 3.77
623 624 9.224058 CCAATTTTTGATCACAAATTTGACAAC 57.776 29.630 23.58 12.65 43.99 3.32
645 646 8.966868 CGGGGCATCTTTATATTTTATACCAAT 58.033 33.333 0.00 0.00 0.00 3.16
660 661 1.890489 GTTGGTTTACGGGGCATCTTT 59.110 47.619 0.00 0.00 0.00 2.52
663 664 0.524414 GTGTTGGTTTACGGGGCATC 59.476 55.000 0.00 0.00 0.00 3.91
664 665 1.238625 CGTGTTGGTTTACGGGGCAT 61.239 55.000 0.00 0.00 36.71 4.40
665 666 1.892862 CGTGTTGGTTTACGGGGCA 60.893 57.895 0.00 0.00 36.71 5.36
667 668 0.869730 CTTCGTGTTGGTTTACGGGG 59.130 55.000 0.00 0.00 40.48 5.73
670 671 3.383761 ACTACCTTCGTGTTGGTTTACG 58.616 45.455 0.00 0.00 41.38 3.18
677 678 6.005583 TCTTGTAGTACTACCTTCGTGTTG 57.994 41.667 26.41 8.91 35.26 3.33
678 679 6.639632 TTCTTGTAGTACTACCTTCGTGTT 57.360 37.500 26.41 0.00 35.26 3.32
680 681 7.066766 ACCTATTCTTGTAGTACTACCTTCGTG 59.933 40.741 26.41 12.98 35.26 4.35
711 738 7.038154 TCCACCAAGTGTCATTTCTTTTTAG 57.962 36.000 0.00 0.00 0.00 1.85
724 928 3.843027 AGAATCTGAGATCCACCAAGTGT 59.157 43.478 0.00 0.00 0.00 3.55
730 934 5.221009 GCATTTTGAGAATCTGAGATCCACC 60.221 44.000 0.00 0.00 34.92 4.61
876 1087 3.716204 GAAGGGCGGGGGTTGGATC 62.716 68.421 0.00 0.00 0.00 3.36
1123 1334 2.003301 GAACTTCTCGAACAGGATGGC 58.997 52.381 0.00 0.00 43.62 4.40
1870 2084 1.125093 TTCTTCTCCCGGTCCTGCAA 61.125 55.000 0.00 0.00 0.00 4.08
2337 2551 2.635229 CTTCCCGGAGCACCATCTCG 62.635 65.000 0.73 0.00 33.98 4.04
2370 2584 5.348451 GCTGCGGAAAATTACAAATGTTCAT 59.652 36.000 0.00 0.00 0.00 2.57
2431 2647 1.765314 AGATCAGATAAACAGGGCGCT 59.235 47.619 7.64 0.00 0.00 5.92
2536 2752 8.970859 AAGAGGAACAAATATGATCTTACAGG 57.029 34.615 0.00 0.00 0.00 4.00
2546 2764 6.038714 GCTACAAGGGAAGAGGAACAAATATG 59.961 42.308 0.00 0.00 0.00 1.78
2577 2795 0.516877 CTGCGTCTCATCGGCAAAAA 59.483 50.000 0.00 0.00 0.00 1.94
2659 2877 2.571212 TGCCTGAACTGTAACACTTGG 58.429 47.619 0.00 0.00 0.00 3.61
2662 2880 3.820557 ACATTGCCTGAACTGTAACACT 58.179 40.909 0.00 0.00 0.00 3.55
2670 2888 5.007921 GCAAATTTCAAACATTGCCTGAACT 59.992 36.000 10.16 0.00 41.67 3.01
2748 2969 4.870221 AGTTGAGTTAACGGACAAACAC 57.130 40.909 14.00 6.60 44.15 3.32
2757 2978 5.082059 GCATCACATCAAGTTGAGTTAACG 58.918 41.667 11.91 0.27 44.15 3.18
2764 2985 5.737860 AGATACAGCATCACATCAAGTTGA 58.262 37.500 8.27 8.27 35.96 3.18
2780 3004 7.741027 ATGAGTGGCAAATCATAAGATACAG 57.259 36.000 1.22 0.00 34.42 2.74
2781 3005 7.229306 GGAATGAGTGGCAAATCATAAGATACA 59.771 37.037 4.10 0.00 35.11 2.29
2782 3006 7.229306 TGGAATGAGTGGCAAATCATAAGATAC 59.771 37.037 4.10 0.00 35.11 2.24
2887 3113 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
2899 3125 6.598753 AAAACGATCTTGTATTATGGGACG 57.401 37.500 0.00 0.00 0.00 4.79
2906 3132 7.494625 CCTAGCCTGAAAAACGATCTTGTATTA 59.505 37.037 0.00 0.00 0.00 0.98
2911 3137 3.181506 GCCTAGCCTGAAAAACGATCTTG 60.182 47.826 0.00 0.00 0.00 3.02
2926 3152 4.691326 ACTTATTTCCTACTGCCTAGCC 57.309 45.455 0.00 0.00 0.00 3.93
2938 3164 7.571025 TCCCCAATCTTGTACTACTTATTTCC 58.429 38.462 0.00 0.00 0.00 3.13
2939 3165 9.457436 TTTCCCCAATCTTGTACTACTTATTTC 57.543 33.333 0.00 0.00 0.00 2.17
2940 3166 9.816787 TTTTCCCCAATCTTGTACTACTTATTT 57.183 29.630 0.00 0.00 0.00 1.40
2941 3167 9.816787 TTTTTCCCCAATCTTGTACTACTTATT 57.183 29.630 0.00 0.00 0.00 1.40
2964 3190 6.410540 TCAAGTTTGCCCAGTTAACATTTTT 58.589 32.000 8.61 0.00 0.00 1.94
2965 3191 5.983540 TCAAGTTTGCCCAGTTAACATTTT 58.016 33.333 8.61 0.00 0.00 1.82
2966 3192 5.453198 CCTCAAGTTTGCCCAGTTAACATTT 60.453 40.000 8.61 0.00 0.00 2.32
2967 3193 4.039124 CCTCAAGTTTGCCCAGTTAACATT 59.961 41.667 8.61 0.00 0.00 2.71
2969 3195 2.955660 CCTCAAGTTTGCCCAGTTAACA 59.044 45.455 8.61 0.00 0.00 2.41
2970 3196 2.296190 CCCTCAAGTTTGCCCAGTTAAC 59.704 50.000 0.00 0.00 0.00 2.01
2971 3197 2.593026 CCCTCAAGTTTGCCCAGTTAA 58.407 47.619 0.00 0.00 0.00 2.01
2972 3198 1.203001 CCCCTCAAGTTTGCCCAGTTA 60.203 52.381 0.00 0.00 0.00 2.24
2973 3199 0.469892 CCCCTCAAGTTTGCCCAGTT 60.470 55.000 0.00 0.00 0.00 3.16
2974 3200 1.153756 CCCCTCAAGTTTGCCCAGT 59.846 57.895 0.00 0.00 0.00 4.00
2975 3201 1.607467 CCCCCTCAAGTTTGCCCAG 60.607 63.158 0.00 0.00 0.00 4.45
2976 3202 2.525592 CCCCCTCAAGTTTGCCCA 59.474 61.111 0.00 0.00 0.00 5.36
2977 3203 2.997315 GCCCCCTCAAGTTTGCCC 60.997 66.667 0.00 0.00 0.00 5.36
2978 3204 1.820010 CTTGCCCCCTCAAGTTTGCC 61.820 60.000 0.00 0.00 38.81 4.52
2979 3205 1.667722 CTTGCCCCCTCAAGTTTGC 59.332 57.895 0.00 0.00 38.81 3.68
2981 3207 0.113190 CTCCTTGCCCCCTCAAGTTT 59.887 55.000 3.29 0.00 41.29 2.66
2983 3209 2.234296 CCTCCTTGCCCCCTCAAGT 61.234 63.158 3.29 0.00 41.29 3.16
2986 3212 1.821966 TAGACCTCCTTGCCCCCTCA 61.822 60.000 0.00 0.00 0.00 3.86
2987 3213 1.003051 TAGACCTCCTTGCCCCCTC 59.997 63.158 0.00 0.00 0.00 4.30
2988 3214 1.307084 GTAGACCTCCTTGCCCCCT 60.307 63.158 0.00 0.00 0.00 4.79
2989 3215 0.914902 AAGTAGACCTCCTTGCCCCC 60.915 60.000 0.00 0.00 0.00 5.40
2990 3216 0.253327 CAAGTAGACCTCCTTGCCCC 59.747 60.000 0.00 0.00 32.46 5.80
2994 3419 4.090090 TCCTCTTCAAGTAGACCTCCTTG 58.910 47.826 0.00 0.00 39.50 3.61
2997 3422 5.483811 CTTTTCCTCTTCAAGTAGACCTCC 58.516 45.833 0.00 0.00 0.00 4.30
3025 3450 1.339055 CCTTTCTTCATGGAGCCGTCA 60.339 52.381 0.00 0.00 0.00 4.35
3026 3451 1.339151 ACCTTTCTTCATGGAGCCGTC 60.339 52.381 0.00 0.00 0.00 4.79
3027 3452 0.693049 ACCTTTCTTCATGGAGCCGT 59.307 50.000 0.00 0.00 0.00 5.68
3028 3453 1.065854 AGACCTTTCTTCATGGAGCCG 60.066 52.381 0.00 0.00 0.00 5.52
3029 3454 2.290577 ACAGACCTTTCTTCATGGAGCC 60.291 50.000 0.00 0.00 0.00 4.70
3082 4123 4.261801 ACACCTAATCCGGAAGATGTTTG 58.738 43.478 9.01 2.63 34.56 2.93
3093 4134 9.976511 TCTGTAAATAGAATTACACCTAATCCG 57.023 33.333 0.00 0.00 40.03 4.18
3135 4176 1.015085 CAATGCCCAACCACAATGCG 61.015 55.000 0.00 0.00 0.00 4.73
3138 4179 2.437281 TCAAACAATGCCCAACCACAAT 59.563 40.909 0.00 0.00 0.00 2.71
3144 4185 2.827921 AGGATCTCAAACAATGCCCAAC 59.172 45.455 0.00 0.00 0.00 3.77
3188 4229 1.293498 CTGGAGCCAGTAACGTGCT 59.707 57.895 8.38 0.00 39.10 4.40
3201 4246 0.108615 CTAGACACGCCCAACTGGAG 60.109 60.000 0.00 0.00 40.30 3.86
3245 4290 1.460504 AGCTGGACAGTGATGCATTG 58.539 50.000 0.00 0.00 0.00 2.82
3288 4334 2.554370 TTAAGCCGTTAGGTGCTTGT 57.446 45.000 6.98 0.00 46.66 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.