>input_sequence_53273
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----------ATGGCCGACGCCGGCGCTCGCCTCCCGCTGCTGCTGCTCCTCGCCGCCGCGGGGGCCCTCCTCCTCGCCT
CCCCCGCCGCGGCGGAGATCCGGGCGGAGTCCTTCCGGGAGGACCCGCGCCACGCCATCCTGTTCGAGAAGTTCGGCTTC
TCCAAGACCGGGGCCGTCCGCATCATCCTCTCCGGCGCCGCCGTCTCCTCCTCCTTCGCGCGGGCGGACCCCAAGCAGAT
CGGCTTCTTCCTCCTCGCCGACGAGTCCCTCCTGCAGGCCGCCTCCGAGTCGCGGCCGCCGGCGGAGAAGCGCGCGGAGC
CGGACGACCCGACCGGCGCCGACGAGCCCGACCTGTCCGGGTGCGTCCTCTCCAGCCCCTACGTCAAGAAGCTCTTCACC
TTCCACGACATGGAGG---GCGGGCACTACAACAAGTCCTTCCCGGTCACCCACCCCGACGAGTACAGCCTCTACTTCGC
CAACTGCGCGCCGGAGTCGCTCGTCTCCATGAACGTCCGCACCGAGATGTACAACGCCAACCCGGACGGCTCCAAGGACT
ACCTCCCCGTCGGCCAGGCGCCCGTCCCGGCCATCTACGGCTTCTTCGCCTTCGGCTACGCCGCGTTCCTCGCCGGCTGG
GCCTACCTCACGCTCTCCCGCGACCGCGTGGCGGCCAACCAAATCCACCACCTCATGTCCGCGCTCCTCGTGGCGCGCCT
GCTCTACTGCCTCTCGGCCGCCGAGGACCAGCACTACATCCGCGTCACCGGCACGCCGCACGGCTGGGACGTGGCCTTCT
ACCTCTTCCAGCTCATCAAGGGCGTCATCCTCTTCGCGGTCATCGTGCTGGTCGGCACGGGGTGGTCCTTCCTGAGGCCC
TTCTTGCAGGACCGGGAGAAGAAGGTGCTCATGGTGGTGATCCCGCTGCAGGTCATGGCCAACATCGCCGACGCGGTCAT
CGGGGAGACCGGGCCGTTCATGCAGAGCTGGGTGACATGGAACCAGATCTTGCTGTTCGTCGACGTCGCCTGCTGCTGCG
CCGTGCTCTTCCCGGTCGTCTGGTCCATGCGGTCGCTCCGGGAGACGTCCAAGACCGACGGCAAGGCGGCGCGGAATCTG
TCCAAGCTCACTCTGTTCCGGCAGTTCTACACCGTGGTGATTGGGTACTTGTACTTCACCAGGATCGTGGTGTTTGCGCT
GAGGACCATTGCCAGTTACCAGTACCGGTGGGTGAGCGTCTTGGCCGAGGAAGTGGCATCAATGGCGTTCTACATGTACA
TGTTCTACACATTCAGGCCGGCCGAGAGGAGCAAGTACTTCTCTCTCGACGACGACGATGAGGAGGCCGCCGAGATGGTG
CTCCGGGAAGAGGAATTCGAGCTATGA-----------------------------------------------------
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---------------------
>chr1B_1_TraesCS1B01G296900
ATACTCACTGACACATGGGACCCATCGAGTAGGGACACACAGTGCGGTCCTAAGTGGCAAGTAAAATTTGACCGGTCAAC
CATATAAAATACAATGCTATACGGTGATCCAGTGACCGTATAATCATCGCAACTCGTATTTAATGACCGTATTGAGCGTA
TTCTAAAGTCCAGTGACTGTACTATGCTTTCACCTCAACTTTAGTGACCACAAGTGCATTTATCTCATTTGAATAACCTA
TTTTCACTTTCACACCGATAAAAAAGGAAGCAACATGGCAGTGTGCGGTACTTTTAGCGTAGATGAAGCGAGGGTTGTTT
TCTATTGGTCTCGCCGACTTACTTCAAAACCTCTTTGAAACGAGGTGCAAACCTTAAAACCATCCAATTTTGTTGAATCA
GAGCCATGTGGGAGAGTATGGGCAGGCGAGAGAAGATTTCTTACACAGATGATTCAATCTACTTTCGTCCTGTTTATTAG
TCCCTTTTGTATTTTGGGTCAAACTTTAACCTTTGACTTAACTACCAAAAACATAAGTTCTATACCACCAAAATAGTACC
ATCGAAAACCTTTTTCAAATATGAATCCAACAAAATAACTTTTGTGACATACTGTTTTACTTGGTTGTCAAATTTGTGAT
CAAAAATTGGTATAAAATATAAAGATGCCCCGTAAACCAAC--------------------------ACGAAGGTAGTAC
TACAAGAATAGGTGGATCTAAAAAGAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGACACTTGGTGGATCTCAGATTCTCAAAATGCTA
CACAAGCCGTTCAGTCCTCCTCAGTGTGACCCCGAAGTGTACAAAAAACTTTCCCATCGCACCGTCGGCTACGAC-----
--TGCCCAAGTCAACCTCCTACCGAACTCTCACCAATCGCGAGGCAGATCCAACCCCCGCCCTTCCGCCACATAAGATGG
CCGTGCTCCGCTGCCCCGCTCCACCCACCGCCCACGCGCACACCGACACACTCCCACGCATTCCGCCCCCCACAGGCCAC
AGATCTCGCCATGGCCGACGCCGGCGCTCGCCTCCCGCTGCTGCTGCTCCTCGCCGCCGCGGGGGCCCTCCTCCTCGCCT
CCCCCGCCGCGGCGGAGATCCGGGCGGAGTCCTTCCGGGAGGACCCGCGCCACGCCATCCTGTTCGAGAAGTTCGGCTTC
TCCAAGACCGGGGCCGTCCGCATCATCCTCTCCGGCGCCGCCGTCTCCTCCTCCTTCGCGCGGGCGGACCCCAAGCAGAT
CGGCTTCTTCCTCCTCGCCGACGAGTCCCTCCTGCAGGCCGCCTCCGAGTCGCGGCCGCCGGCGGAGAAGCGCGCGGAGC
CGGACGACCCGACCGGCGCCGACGAGCCCGACCTGTCCGGGTGCGTCCTCTCCAGCCCCTACGTCAAGAAGCTCTTCACC
TTCCACGACATGGAGG---GCGGGCACTACAACAAGTCCTTCCCGGTCACCCACCCCGACGAGTACAGCCTCTACTTCGC
CAACTGCGCGCCGGAGTCGCTCGTCTCCATGAACGTCCGCACCGAGATGTACAACGCCAACCCGGACGGCTCCAAGGACT
ACCTCCCCGTCGGCCAGGCGCCCGTCCCGGCCATCTACGGCTTCTTCGCCTTCGGCTACGCCGCGTTCCTCGCCGGCTGG
GCCTACCTCACGCTCTCCCGCGACCGCGTGGCGGCCAACCAAATCCACCACCTCATGTCCGCGCTCCTCGTGGCGCGCCT
GCTCTACTGCCTCTCGGCCGCCGAGGACCAGCACTACATCCGCGTCACCGGCACGCCGCACGGCTGGGACGTGGCCTTCT
ACCTCTTCCAGCTCATCAAGGGCGTCATCCTCTTCGCGGTCATCGTGCTGGTCGGCACGGGGTGGTCCTTCCTGAGGCCC
TTCTTGCAGGACCGGGAGAAGAAGGTGCTCATGGTGGTGATCCCGCTGCAGGTCATGGCCAACATCGCCGACGCGGTCAT
CGGGGAGACCGGGCCGTTCATGCAGAGCTGGGTGACATGGAACCAGATCTTGCTGTTCGTCGACGTCGCCTGCTGCTGCG
CCGTGCTCTTCCCGGTCGTCTGGTCCATGCGGTCGCTCCGGGAGACGTCCAAGACCGACGGCAAGGCGGCGCGGAATCTG
TCCAAGCTCACTCTGTTCCGGCAGTTCTACACCGTGGTGATTGGGTACTTGTACTTCACCAGGATCGTGGTGTTTGCGCT
GAGGACCATTGCCAGTTACCAGTACCGGTGGGTGAGCGTCTTGGCCGAGGAAGTGGCATCAATGGCGTTCTACATGTACA
TGTTCTACACATTCAGGCCGGCCGAGAGGAGCAAGTACTTCTCTCTCGACGACGACGATGAGGAGGCCGCCGAGATGGTG
CTCCGGGAAGAGGAATTCGAGCTATGAACATTTGTAATTTTCCGCAGCAATGCCGTGAGCGGCAATTGCCA--TGATTGC
TCTCTTAGCGCCCTGTTTATCTGATCTGATCTCCCCTCTTGAGACTTTAGCACACTATTTATACAGATACCAGGTAGCAG
GTATAGCTCATCGTCTTGTATGTACCGCAGGCCTG--TAAGATCATATTTGTTCCTCTTCCCTTGTAGCTTCAATTTTTG
CCGATGAGACGCAGGATACTAAACTGGATACGTGCAAAGAGGTTCTTGCTTGAAAAGTGCATAGGGAATTAATTGACCAA
GTGTTACAGTTCAGGCAATGTTTGAAATTTGCTGCAA-TTTTGTGTGGTAATCAGTCATTTCATTCTTTGACCAT--TGC
TGATCCTTGTGTTTGTCCGTTAACTCAACTTGATGTGAT---GCTGTATCTTATGATTTGCCACTCATTCCAACGGAGAT
ACCATTATTCA-TTTATGGG-TTATCCTCCTTTTCAAAGAAAAAGATCATTTTATTTTATTTTCTAATTGCAAACTACTC
CCTCCGTCCCATAATACAAGATCGTTTTTCAGGCTAGGCAGTAGGAAATAAGTAGTACAAGATTGGGGAAAAAATGTTAA
CTGGGCAAACTTGAGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GGGCAAGGAGGTCTACTTGAAGAGG
AAAAGCCAGTGACG-------GCTCCATGAAGAAAGGTCTGTTGAAGGAGAA----------------------------
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--------------------CAGTCATTTTTT-CAGTGCCCTCAAACATCTTCCGGATTAGGTGTAATTCTATTTACAGA
TTTGCATTTCTGAAACGCATTGTGGTTGGGCATTGTTTGAGATCCTCGTGGAAACTAAAATGAAGCAAAG----CACGTT
ACTGGCTCCAGTTGGGCGTGTCTAGCGCATGGTACACAACTTTGTTTGGCAATGCATCACTGTCCAGCTTTTCCCG-TTT
CTGTTCCAATGATACAAGCACCTAACGGCTTAAAACAAAGCATGAACATAAATAAAAGTTT-GAGGGGACAGTGCAGTGC
ATGGA-AGGGAGGAGGATACC
>chr1D_259
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------------------TAAAAAAGGAAGCGGAGTGGCAGCGTGTAGTACTTTTAGCGTAGATGAAGCGGGGGTTGTTT
TTCGTTGATCTCGCCGACTTACTCCAAAACCTCTGTGAAACGGGGTACAAAACTTAGAACCACCCAGTTGTGTTGAATCA
AAGCCATGTGGGAGAGTATGGGCAGGCGAGAAAGGATTTCTTAAAGTGATGATTCATACTACCTC---------TATTAG
TCCCTCTTGCATTTTGGGTTAAACTTTAACCTTTGACTTAACTATCAAAAAATTAAGTTCTATACCACAAAAATAGTAGC
ATCGAC------TTCCAAATATGAATCCAACAAAATAACTTTTGGGACATACGATTTTATTTCATTGTCAAATTTGTGGT
CAAAATTTGGCATAAAATATGAAAGGGGCCAGTAAACTCATACGAAGGCCCAGTCAAAAAAAACCATACGAAGGTAGTAC
TACAAGAATAGGTGGATGTAAAAAGAAACAGTTTTGCTAGAACTCATCTAGATGAGATATAGTTTGGTCTCGTTCATCTT
TTATAGCCATTGGATGTGATGCTATAAGATGCGTGTGCTGACGTGGGTTGTATCTGTTTTTGTTTTCAAGATGAATGAGA
CCAAATTATATCTCATCTAAATGAGTTCTGGGCACTCAAAAAAAATGGCACTTAGTGGATCTCAAATTCTCATAATGCTA
CACAAGCCGTTCAGTCGTCCTCAGTGTGACCCCGAAGTGTA-AAAAAACTTTCCCATCGCACCGTCGGCTACGAC-----
--TGCCCAAGTCAACCTCCTACCGAACTCTCACCAATCGCGAGGCACATCCAACCCCCGCGCTTCCGCCACATAAGACGG
CCGTGCTCCGCTGCCCCGCTCCACCCACCGCCCACGCGCACACCGACACACTCCCACGCATTCCGCCCCCCACAGGCCAC
AGATCTCGCCATGGCCGACGCCGGAGCTCGCCACCTCCTGCTGCTGCTCCTCGCCGCCGCGGGGGTCCTCCTCCTCGCCT
CCCCCGCCGCGGCGGAGATCCGGGCGGAGTCCTTCCGGGAGGACCCGCGCCACACCATCCTGTTCGAGAAGTTCGGCTTC
TCCAAGACCGGGGCCGTCCGCATCATCCTCTCCGGCGCCGCCGTCTCCTCCTCCTTCGCGCGGGCGGACCCCAAGCAGAT
CGGCTTCTTCCTCCTCGCCGACGAGTCCCTCCTGCAGGCCGCCTCCGAGTCGCGGCCGCCGGCGGAGAAGCGCGCGGAGC
CGGACGACCCAACCGGCGCCGACGAGCCCGACCTGTCCGGCTGCGTCCTCTCCAGCCCCTACGTCAAGAAGCTCTTCACC
TTCCACGACATGGAGG---GCGGGCACTACAACAAGTCCTTCCCGGTCACCCACCCCGACGAGTACAGCCTCTACTTCGC
GAACTGCGCGCCGGAGTCGCTCGTCTCCATGAACGTCCGCACCGAGATGTACAACGCCAACCCGGACGGCTCCAAGGACT
ACCTCCCCGTCGGCCAGGCGCCCGTCCCGGCCATCTACGGCTTCTTCGCCTTCGGCTACGCCGCGTTCCTCGCCGGCTGG
GCCTACCTCACGCTCTCCCGCGACCGCGTGGCGGCCAACCAAATCCACCACCTCATGTCCGCGCTCCTCGTGGCGCGCCT
GCTCTACTGCCTCTCGGCCGCCGAGGACCAGCACTACATCCGCGTCACCGGCACGCCGCACGGCTGGGACGTGGCCTTCT
ACCTCTTCCAGCTCATCAAGGGCGTCATCCTCTTCGCGGTCATCGTGCTGGTCGGCACGGGCTGGTCCTTCCTGAGGCCC
TTCCTGCAGGACCGGGAGAAGAAGGTGCTCATGGTGGTGATCCCGCTGCAGGTCATGGCCAACATCGCCGACGCGGTCAT
CGGGGAGACCGGGCCGTTCATGCAGAGCTGGGTGACATGGAACCAGATCTTGCTGTTCGTCGACGTCGCCTGCTGCTGCG
CCGTGCTCTTCCCGGTCGTCTGGTCCATGCGGTCGCTCCGGGAGACGTCCAAGACCGACGGCAAGGCGGCGCGGAATCTG
TCCAAGCTCACTCTGTTCCGGCAGTTCTACACCGTGGTGATTGGGTACCTGTACTTCACCAGGATCGTGGTGTTTGCGCT
CAGGACTATTGCCAGTTACCAGTACCGGTGGGTGAGCATCCTGGCCGAGGAAGTGGCATCAATGGCGTTCTACATGTACA
TGTTCTACACATTCAGGCCGGCCGAGAGGAGCAAGTACTTCTCTCTGGACGACGACGATGAGGAGGCCGCGGAGATGGTG
CTCCGGGAAGAGGAATTCGAGCTCTGAACATTTGTAATTTTCCGCAACAATGCCGTGAGCTGCAATTGCGCCTTGATTGC
TCTCTTGGTAACCTGTTTATCTGATCTGATCTCCCCTCTTGAGACTTTAGCACACTATTTATACAGATACCAGGTAGCAG
GTATAGCTCATCGTCTTGTATGTACCGCAGGGCTG--TAAGATTATATTTGTTCCTCTTCCCTTGTAGCTTCAAATTTTG
CCGATGAGACGCAGGATACTAAACTGGATACGTGCAAAGAGGTTCTTGCTTGAAAAGTGCATAGGGAATTAACTGAGCAG
GTGTTACTGTTCAGGCAATGTTTGAAATTTGCTGCATTTTTTGTGTGGTAATCAGTCATTTCATTCTTTGACCAT--TGC
TGATCCTTATGTTTGTCTGTTAACACAACTTGATGTGAT---G---TATCTTATGATTTGCCACTCATTCCAACGGAGAT
ACCATTATTCATTTTATGGG-TTGTCCTCCTTTCCGTAGAAAAATATCATTTTATTTTATTTTCTAATTGCATACTACTC
CCTCTGTCCCACAATATAAGATCGTTTTTCATGCTAGGGAGTACTCCCTCCGTCCTTAAAAGAGTGTACTTCCAACAAGG
TCAAACTATCTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AAAGTTCTGATCAAGTTTGTGCAAAAATATGTCAATGCTTGTGAAACC
AAATAGGTATATAACGAAAATATATTTTATGATGAATCTAATGTTTGATGGCATAAATGTTGGTCTATTATTGTATAAAT
ACGGTCAAACATAAAAAAATTGACCTTACAACAAATTTGGAAGTATCACTCTTTCAAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAGTCCCTTTTT-CAGTGCCCTGAAACATCTTCTGGA-TAGGTGTAATGCTATTTACAGA
TTTGCATTTCTGAAATGCCTTGTGATTGGGCATTGTTTGAGACCCTCGTGGAAACTAAAATGAAGCAAGGCACACACATT
ACTGGTTCCAGTTGGGCATGTCTAGCGCATGGTACACAACTTTGTTTGGTAATGCATCACTGTCCAGCTTTTCCCGTTTT
CTGTTCCAATGATCCAAGCACCTAACGGCTTAAAAC-AAGCATGAACATAAATAAAAGTTTTGAGGGGACAGTGCAGTGC
ATGGAAAGGGAGGAGGATACC
>chr1A_762
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----AGCCGTTCAGTCCTCATCGGTGTGACCCCGAAGTGTACAAAAAACTTTCCCATCGCACCGTCGGCTACGACCTACG
ACTGCCCAAGTCAACCTCCTACCGAACTCTCACCAATCGCGAGGCACATCCAACCCCCGCCCTTCCGCCACATAAGACGG
CCGTGCTCCGCTGCCCCGCTCCACCCACCGCCCACGCGCACACCGACACACTCCCACGCATTCCGCCCCCCACAGGCCAC
AGATCTCGCCATGGCCGACGCCGGAGCTCGCCTCCCGCTGCTGCTCCTCCTCGCCGCCGCGGGGGCCCTCCTCCTCGCCT
CCCCCGCCGCGGCGGAGATCCGGGCGGAGTCCTTCCGGGAGGACCCGCGCCACACCATCCTGTTCGAGAAGTTCGGCTTC
TCCAAGACCGGCGCGGTCCGCATCATCCTCTCCGGCGCCGCCGTCTCCTCCTCCTTCGCGCGGGCGGACCCCAAGCAGAT
CGGGTTCTTCCTCCTCGCCGACGAGTCCCTCCTGCAGGCCGCCTCCGAGTCGCGGCCGCCACCGGAGAAGCGCGCGGAGC
CGGACGACCCGACCGGCGCCGACGAGCCCGACCTGTCCGGGTGCGTCCTCTCCAGCCCCTACGTCAAGAAGCTCTTCACC
TTCTTTGACATGGAGG---GCGGGCACTACAACAAGTCCTTCCCGGTCACCCACCCCGACGAGTACAGCCTCTACTTCGC
CAACTGCGCGCCGGAGTCGCTCGTCTCCATGAACGTCCGCACCGAGATGTACAACGCCAACCCGGACGGCTCCAAGGACT
ACCTCCCCGTCGGCCAGGCGCCCGTCCCGGCCATCTACGGCTTCTTCGCCTTCGGCTACGCCGCGTTCCTCGCCGGGTGG
GCCTACCTCACGCTCTCCCGCGACCGCGTGGCGGCCAACCAAATCCACCACCTCATGTCCGCGCTCCTCGTGGCGCGCCT
GCTCTACTGCCTCTCCGCCGCCGAGGACCAGCACTACGTCCGCGTCACCGGCACGCCACACGGCTGGGACGTGGCCTTCT
ACCTCTTCCAGCTCATCAAGGGCGTCATCCTCTTCGCGGTCATCGTGCTGGTCGGCACGGGCTGGTCCTTCCTGAGGCCC
TTCCTGCAGGACCGGGAGAAGAAGGTGCTCATGGTGGTGATCCCGCTGCAGGTCATGGCCAACATCGCCGACGCGGTCAT
CGGGGAGACCGGGCCGTTCATGCAGAGCTGGGTGACATGGAACCAGATCCTGCTCTTCGTCGACGTCGCCTGCTGCTGCG
CCGTGCTCTTCCCGGTCGTCTGGTCCATGCGGTCGCTCCGGGAGACGTCCAAGACCGACGGCAAGGCGGCGCGGAACCTG
TCCAAGCTCACTCTGTTCCGGCAGTTCTACACCGTGGTGATTGGGTACCTGTACTTCACCAGGATCGTGGTGTTTGCGCT
GAGGACCATTGCCAGTTACCAGTACCGGTGGGTGAGCATCCTGGCCGAGGAAGTGGCATCAATGGCGTTCTACATGTACA
TGTTCTACACATTCAGGCCGGCCGAGAGGAGCAAGTACTTCTCTCTCGACGACGACGACGAGGAGGCCGCGGAGATGGTG
CTCCGGGAAGAGGAATTCGAGCTCTGAGCATTTGTAATTTTCCGCGACAATGCCGTGAGCTGCAATTTCCA--TGATTGC
TCTCTTGGCGCCCTGTTTATCTGATCTGATCTCCCCTCTTGAGACTTTAGCACACTATTTATACAGATACCAGGTAGCAG
GTATAGCTCATCGTCTTGTATGTACTGCAGGGCTGTATAAGATTATATTTGTTCCTCTTTCCTTGTAGCTTCAAATTTTG
CCGATGAGACGCAGGATACTAAACTGGATACGTGCAAAGAGGTGCTTGCTTGAAAAGTGCACACGGAATTAATTGAGCAG
GTGTTACTGTTCAGGCAATGTTTGAAATTTGCTGCAA-TTTTGTGTGGTGATCAGTCATTTCATTCTTTGACCATATTGT
TGATCCTTTTGTTTGTCTGTTAACACGACTCGATGTGTTGTCG---TATCTTATGATTTGCCACTCATTGCAACGGAAAT
CCCACTATTCATTTTATGGGATTATCCTTCTTTTCGAAGGAAAAAAC-----TATTTTATTTTCTAATTGGGGAAAATGA
AAAAAGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAAGGGAAAAGAGGTCTACTTGAAGAGG
AAAAGCCAGGTGTCTAAACTAGCTCCATGAAGAAAGGTCTGTTCAAGGAGAA----------------------------
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--------------------CAGTCCTTTTCCCCAGTGCCTTGAAACATCTTCTGGA-TAGGT-TAATGCTATTTACAGA
TTTGCATTTCTGAAATGCCTTCTGATTGGGCATTGTTTGAGATCCTCGTGGAAACTAAAATGAAGCAAGGCACACACATT
ACTGGTTCCAGTTGGGCGTGTCTA-------GTACACAACTTTGTTTGGTAATGCATCACTGTCCAGCTTTTCCCG-TTT
CTGTTCCAATGATCCAAGCACCTAACGGCTTAAAAC-AAGCATGAACATAAATAAAAGTTT-GAGGGGACAGTGCA----
-TGGA-AGGGAGGAGGATA--
>chr3D_1025
CCGCCT--------------------------------------------------------------------------
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---------------------------------------GCTCCTCCTCCTCGCGGTGGCCGGGGCCGTCCTCCGCCCG-
-----GCCGCGGCGGAGATCAAGCAGGAGTCCTTCAAGGACGACTCCCGCGGGACCATCCTCTTCGAGAAGTTCGGCTTC
TCGCACCGCGGGTCCGTCTCCATCGCGCTCACCGGCGCCAAGGCCGTCTCCAAGCTCGCCAAGCCGGACCCCGCGCAGCT
TGGCTTCTTCCTCCTCTCCGACGAGGCCCTCTTCGAGGCCATCTACGAGCAGCCGCCGCCCACGGATCTGAACCCCAACC
CCGACCCCAACACG------------------------GGCTGCGTCCTCGCCAGCCGCTACGTCATCCCGCTCTTCACC
TTCGCCGAACTCGACGCCAGCGGCAACTGCAACAAGACCTTCCCCGTCTCCCACCCCGACGAGTACAGCCTCTTCTTCGC
CAACTGCGCGCCCGAGACCGCCGTCACCATGGAGGTACGCACCGACATGTACAACACCAACCCGGACGGCTCCAAGGACT
ACCTCTCCGTCGGCCAGGCCCCCGTCCCGACGATCTACGCCTTCTTCGCGCTCGGCTACGTCGCCTTCCTGGCCGGCTGG
CTCTACCTCACCCTCTACCACAACCGCCTCTCGGCGCACCGCATCCACCACCTCATGTCCTGCCTGCTCCTCGCCCGTAT
GCTCTACTGCATCTCGGCCGCTGAGGACCAGCACTACATCCGCGTCGCCGGATCTTCGCATGGGTGGGACGTGATGTTCT
ATCTGTTCCAGCTTGTTAAGGGTGTGATCTTGTTCGCCGTGATCGCGCTGATTGGTACCGGCTGGTCGTTCCTCAAGCCC
TTCCTGCAGGACAAGGAGAAGAAGGTGCTCATGGTGGTGATCCCGTTGCAGGTTGCAGCTAACATTGCTGCAGCCGTCGT
TGGTGAGACCGGGCAGTACTTGCAAGCATGGTTGACATGGAACCAGATCTTCTTGTTTGTTGATGTGGCCTGCTGCTGCG
CGGTGCTCTTCCCAGTTGTGTGGTCGATGCGTTCGCTGCGCGAGTCATCCAAGACAGACGGCAAGGCTGCACGAACCCTT
GCCAAGCTCACGCTCTTCCGCCAGTTCTACGTCGTTGTGATTGGATACTTGTACTTCACAAGGATCATTGTCTACGCGCT
CAAGACAATCACCAACTACAAGTACAGATGGGTGAGTGTCGCGGCAGAGGAGGTGGCCACCATGGCATTCTACATGTTCA
TGTTCTACATGTTCAAGCCGGCTGAGAGGAACCAGTACTTTGCTCTGGATGACGATGAGGAGGAGGCTGCGGAGATGGCT
CTCCGTGAGGAGGAGTTCGAGCT---------------------------------------------------------
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---------------------
>chr3A_1029
--------------------------------------------------------------------------------
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--------------------------------------TGCTCCTGCTCCTCGCGGTGGCCGGGGCCGTCCTCCGCCCG-
-----GCCGCGGCGGAGATCAAGCAGGAGTCCTTCAAGGACGACTCCCGCGGGACCATCCTCTTCGAGAAGTTCGGCTTC
TCGCACCGCGGGTCCGTCTCCATCGCGCTCACCGGCGCCAAGGTCGTCTCCAAGCTCGCCAAGCCGGAGCCCGCGCAGCT
CGGCTTCTTCCTCCTCTCCGACGAGGCCCTCTTCGAGGCCATCTACGAGCAGCCGCCGCCCACGGATCTGAACCCCAACC
CCGACCCCAACACG------------------------GGCTGCGTCCTCAACAGCCGCTACGTCATCCCGCTCTTCACC
TTCGGCGACCTCGACGCCACCGGCAACTACAGCAAGACCTTCCCCGTCTCCCACCCCGACGAGTACAGCCTCTTCTTCGC
CAACTGCGCGCCCGAGACCGCAGTCACCATGGAGGTACGCACCGACATGTACAACACCAACCCCGACGGCACCAAGGACT
ACCTCTCCGTCGGCCAGGCCCCCGTCCCGACGATCTACGCCTTCTTCGCGCTCGGCTACGTCGCCTTCCTGGCCGCCTGG
CTCTACCTCACCCTCTACCACAACCGCCTCTCGGCGCACCGCATCCACCACCTCATGTCCTGCCTGCTCCTCGCCCGTAT
GCTCTACTGCATCTCGGCCGCCGAGGACCAGCACTACATCCGCGTCGCCGGATCTTCGCATGGCTGGGACGTCATGTTCT
ATCTGTTCCAGCTTGTTAAGGGTGTGATCTTGTTCGCCGTGATCGCGCTGATTGGTACCGGCTGGTCGTTCCTCAAGCCC
TTCCTGCAGGACAAGGAGAAGAAGGTGCTCATGGTGGTGATCCCTTTGCAGGTTGCAGCTAACATTGCTGCAGCTGTCGT
TGGTGAGACCGGGCAATACTTGCAAGCATGGGTGACATGGAACCAGATCTTCTTGTTTGTTGATGTAGCCTGCTGCTGCG
CGGTGCTCTTCCCGGTTGTGTGGTCGATGCGTTCCCTGCGCGAGTCATCCAAGACAGACGGCAAGGCTGCACGAACCCTC
GCCAAGCTCACGCTCTTCCGCCAGTTCTATGTCGTTGTGATTGGATACTTGTACTTCACAAGGATCATTGTCTATGCGCT
CAAGACAATCACCAACTACAAGTACAGATGGGTGAGTGTCGCGGCAGAGGAGGTGGCCACCATGGCATTCTACATGTTCA
TGTTCTACATGTTCAAGCCGGCTGAGAGGAACCAGTACTTTGCTCTGGATGACGATGAGGAGGAGGCTGCGGAGATGGCT
CTCCGTGAGGAGGAGTTCGAGCT---------------------------------------------------------
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---------------------
>chr3B_1069
--------------------------------------------------------------------------------
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----------------------------------------------------------------------CTCCGCCCG-
-----GCCGCGGCGGAGATCAAGCAGGAGTCCTTCAAGGATGACTCCCGCGGGACCATCCTCTTCGAGAAGTTCGGCTTC
TCGCACCGCGGGTCCGTCTCCATCGCGCTCACCGGCGCCAAGGCCGTCTCCAAGCTCGCCAAGCCGGACCCCGCGCAGCT
CGGCTTCTTCCTCCTCTCCGACGAGGCCCTCTTCGAGGCCATCTACGAGCAGCCGCCGCCCACGGATCTGAACCCCAACC
CCGACCCCAACACG------------------------GGCTGCGTCCTCGCCAGCCGCTACGTCATCCCGCTCTTCACC
TTCGCCGACCTCGACGCCAGCGGCAACTACAAGAAGACCTTCCCCGTCTCCCACCCCGACGAGTACAGCCTCTTCTTCGC
CAACTGCGCGCCCGAGACCGCCGTCACCATGGAGGTACGCACCGACATGTACAACACCAACCCGGACGGCTCCAAGGACT
ACCTCTCCGTCGGCCAGGCCCCCGTCCCGACGATCTACGCCTTTTTCGCGCTCGGCTACGTCGCCTTCCTGGCCGCCTGG
CTCTACCTCACCCTCTACCACAACCGCCTCTCGGCGCACCGCATCCACCACCTCATGTCCTGCCTGCTCCTCGCCCGTAT
GCTCTACTGCATCTCGGCCGCCGAGGACCAGCACTACATCCGCGTCGCTGGATCTTCCCATGGGTGGGACGTCATGTTCT
ATCTCTTCCAGCTTGTTAAGGGTGTGATCTTGTTCGCGGTGATCGCGCTGATTGGTACCGGGTGGTCGTTCCTCAAGCCC
TTCCTGCAGGACAAGGAGAAGAAGGTGCTCATGGTGGTGATCCCGTTGCAGGTTGCAGCTAACATTGCTGCAGCTGTCGT
TGGTGAGACCGGGCAATACTTGCAAGCATGGGTGACATGGAACCAGATCTTCTTGTTTGTTGATGTAGCCTGCTGCTGCG
CGGTGCTCTTCCCAGTTGTGTGGTCGATGCGATCGCTGCGAGAGTCATCCAAGACAGATGGCAAGGCTGCCCGAACCCTC
GCCAAGCTCACGCTCTTCCGCCAGTTCTACGTCGTCGTGATTGGATACTTGTACTTCACAAGGATCATTGTCTATGCGCT
CAAGACAATCACCAACTACAAGTACAGATGGGTGAGTGTTGCGGCAGAGGAGGTGGCCACCATGGCATTCTACATGTTCA
TGTTCTACATGTTCAAGCCGGCTGAGAGGAACCAGTACTTTGCTCTGGATGACGATGAGGAGGAGGCTGCGGAGATGGCT
CTCCGTGAGGAGGAGTTCGAGCT---------------------------------------------------------
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---------------------
>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------SSSS------S---SS-----------------------S---------
-SSS---S---------------S----------S-------S---S----S----S-----S---S--S----------
S------------------------------S-S---------S-SS---------SS----S-SSSSSSSSSS------
-----S---S---------S------------------------S------SS---------------S---------S-
-----SSSSSSS--S-----------------------------S-------SS-----S--SS--------------S-
-----S----S---------S--SSS-S--S------SS-S---------------------------------------
-----------------S--------------------------------------------------------------
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-----------------------------------------------S-----S----------S-------S-------
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----------------------------------------------S------------------------------S--
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------------------------S-------------------------------------------------------
-----------------------------------------------------S--------------------------
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---S----------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
----------------------------------------------------------------------S---------
-----------------------S----------------------S-------------S-------------------
------S-------------------------------------------------------------------------
-------------------------------S-----------S------------------------------S-----
----------------------------------------------------------------------------S--S
-------S------------------------------------------------------------------------
--------S--------S------S------------------SSS----------------------------------
-----------------------------------S--------S---------------------------S-------
----S------S----S--------------S------S----SSSSS-SS--SS-SS--SSSSS-SSSSSSS-SSSSSS
SSSSS-S-S--SSSSS----------------------------------------------------------------
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----------------------------------------------------------S--S------------------
---------SSSSS-----------------------------S------------------------------------
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-------------------------S----------------S----------S---S----------S-----------
---------------S--S-----S-------------------------------------------S--------S--
-----S-------------------------------------------S------------------------------
-------------S----------------------S-------------------------------------------
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>forward_53
---------------------------------GACACACAGTGCGGTCCTAA---------------------------
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>reverse_2084
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---TTGCAGGACCGGGAGAAGAA---------------------------------------------------------
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>forward_54
----------------------------------ACACACAGTGCGGTCCTAAG--------------------------
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>reverse_2551
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----------------------------------------------------------------------CGAGATGGTG
CTCCGGGAAG----------------------------------------------------------------------
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>forward_55
-----------------------------------CACACAGTGCGGTCCTAAGT-------------------------
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>reverse_2584
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-----------------------ATGAACATTTGTAATTTTCCGCAGC--------------------------------
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>forward_56
------------------------------------ACACAGTGCGGTCCTAAGTG------------------------
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>reverse_2647
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------AGCGCCCTGTTTATCTGATCT-----------------------------------------------------
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