Multiple sequence alignment - TraesCS1B01G296700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G296700 chr1B 100.000 2733 0 0 1 2733 515915064 515912332 0.000000e+00 5048.0
1 TraesCS1B01G296700 chr1B 94.776 134 7 0 2582 2715 101517089 101517222 3.140000e-50 209.0
2 TraesCS1B01G296700 chr1B 90.850 153 12 2 2583 2733 503622551 503622399 1.460000e-48 204.0
3 TraesCS1B01G296700 chr1B 100.000 82 0 0 3026 3107 515912039 515911958 5.370000e-33 152.0
4 TraesCS1B01G296700 chr1D 86.528 2702 136 72 6 2585 384476202 384473607 0.000000e+00 2763.0
5 TraesCS1B01G296700 chr1A 88.034 2131 114 62 507 2585 484302246 484300205 0.000000e+00 2392.0
6 TraesCS1B01G296700 chr1A 91.304 437 17 9 10 437 484326748 484326324 7.470000e-161 577.0
7 TraesCS1B01G296700 chr1A 96.341 82 3 0 3026 3107 432546193 432546274 5.400000e-28 135.0
8 TraesCS1B01G296700 chr6A 88.095 504 29 20 1076 1576 389756381 389756856 1.250000e-158 569.0
9 TraesCS1B01G296700 chr6A 96.341 82 3 0 3026 3107 579394395 579394476 5.400000e-28 135.0
10 TraesCS1B01G296700 chr6B 95.420 131 6 0 2585 2715 592446523 592446653 3.140000e-50 209.0
11 TraesCS1B01G296700 chr6B 89.404 151 14 2 2585 2733 498537585 498537435 4.090000e-44 189.0
12 TraesCS1B01G296700 chr3B 95.420 131 6 0 2585 2715 38042104 38042234 3.140000e-50 209.0
13 TraesCS1B01G296700 chr3B 94.118 136 8 0 2582 2717 754153278 754153143 1.130000e-49 207.0
14 TraesCS1B01G296700 chr3B 93.333 135 9 0 2585 2719 406552482 406552616 1.890000e-47 200.0
15 TraesCS1B01G296700 chr3B 91.429 140 11 1 2580 2719 96068281 96068419 1.140000e-44 191.0
16 TraesCS1B01G296700 chr7B 94.737 133 7 0 2583 2715 413999920 413999788 1.130000e-49 207.0
17 TraesCS1B01G296700 chr2B 94.737 133 7 0 2585 2717 180328264 180328396 1.130000e-49 207.0
18 TraesCS1B01G296700 chr2B 92.701 137 10 0 2583 2719 54008478 54008614 6.800000e-47 198.0
19 TraesCS1B01G296700 chr2A 89.610 154 14 2 2582 2733 533536239 533536086 8.790000e-46 195.0
20 TraesCS1B01G296700 chr2A 97.531 81 2 0 3027 3107 740358016 740357936 4.180000e-29 139.0
21 TraesCS1B01G296700 chr5B 88.961 154 15 2 2582 2733 437805816 437805663 4.090000e-44 189.0
22 TraesCS1B01G296700 chr5B 91.241 137 12 0 2583 2719 587441460 587441596 1.470000e-43 187.0
23 TraesCS1B01G296700 chr4B 89.404 151 14 2 2585 2733 464959292 464959142 4.090000e-44 189.0
24 TraesCS1B01G296700 chr4B 96.341 82 3 0 3026 3107 559291209 559291290 5.400000e-28 135.0
25 TraesCS1B01G296700 chr4B 96.341 82 3 0 3026 3107 566242221 566242140 5.400000e-28 135.0
26 TraesCS1B01G296700 chr7A 96.429 84 1 2 3026 3107 422826266 422826349 1.500000e-28 137.0
27 TraesCS1B01G296700 chr7A 96.341 82 3 0 3026 3107 490119330 490119411 5.400000e-28 135.0
28 TraesCS1B01G296700 chr5A 96.341 82 3 0 3026 3107 331381875 331381794 5.400000e-28 135.0
29 TraesCS1B01G296700 chr4A 96.341 82 3 0 3026 3107 702645152 702645233 5.400000e-28 135.0
30 TraesCS1B01G296700 chr3D 81.609 87 16 0 1148 1234 460414674 460414760 4.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G296700 chr1B 515911958 515915064 3106 True 2600 5048 100.000 1 3107 2 chr1B.!!$R2 3106
1 TraesCS1B01G296700 chr1D 384473607 384476202 2595 True 2763 2763 86.528 6 2585 1 chr1D.!!$R1 2579
2 TraesCS1B01G296700 chr1A 484300205 484302246 2041 True 2392 2392 88.034 507 2585 1 chr1A.!!$R1 2078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 893 0.103208 AAGACTCGGATCATGCGGAC 59.897 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2606 2755 0.030908 GACGAAGCCGGACAGGATAG 59.969 60.0 5.05 0.0 45.0 2.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.383737 AACAAATGCACGCACGTACG 60.384 50.000 15.01 15.01 39.50 3.67
33 34 0.435388 CAAATGCACGCACGTACGTA 59.565 50.000 22.34 4.43 46.34 3.57
34 35 0.435769 AAATGCACGCACGTACGTAC 59.564 50.000 22.34 15.19 46.34 3.67
35 36 1.346378 AATGCACGCACGTACGTACC 61.346 55.000 22.34 13.91 46.34 3.34
51 52 1.473497 TACCACTACCCGCAAGCACA 61.473 55.000 0.00 0.00 0.00 4.57
69 70 2.226437 CACACACGGCAGCTAGAAAATT 59.774 45.455 0.00 0.00 0.00 1.82
74 75 3.374988 CACGGCAGCTAGAAAATTGATCA 59.625 43.478 0.00 0.00 0.00 2.92
77 78 4.495349 CGGCAGCTAGAAAATTGATCACTG 60.495 45.833 0.00 0.00 0.00 3.66
78 79 4.397417 GGCAGCTAGAAAATTGATCACTGT 59.603 41.667 0.00 0.00 0.00 3.55
79 80 5.586243 GGCAGCTAGAAAATTGATCACTGTA 59.414 40.000 0.00 0.00 0.00 2.74
80 81 6.238320 GGCAGCTAGAAAATTGATCACTGTAG 60.238 42.308 0.00 0.00 0.00 2.74
81 82 6.314896 GCAGCTAGAAAATTGATCACTGTAGT 59.685 38.462 0.00 0.00 0.00 2.73
82 83 7.675870 GCAGCTAGAAAATTGATCACTGTAGTG 60.676 40.741 5.67 5.67 46.91 2.74
83 84 7.332926 CAGCTAGAAAATTGATCACTGTAGTGT 59.667 37.037 11.44 0.18 45.76 3.55
84 85 8.531982 AGCTAGAAAATTGATCACTGTAGTGTA 58.468 33.333 11.44 0.24 45.76 2.90
85 86 8.596380 GCTAGAAAATTGATCACTGTAGTGTAC 58.404 37.037 11.44 7.75 45.76 2.90
86 87 9.862371 CTAGAAAATTGATCACTGTAGTGTACT 57.138 33.333 11.44 0.00 45.76 2.73
88 89 9.640963 AGAAAATTGATCACTGTAGTGTACTAC 57.359 33.333 13.83 13.83 46.78 2.73
89 90 9.640963 GAAAATTGATCACTGTAGTGTACTACT 57.359 33.333 19.56 2.90 46.74 2.57
110 111 8.908903 ACTACTACTACTACTACTACATCGTGT 58.091 37.037 0.00 0.00 0.00 4.49
111 112 9.179552 CTACTACTACTACTACTACATCGTGTG 57.820 40.741 1.58 0.00 0.00 3.82
112 113 7.551585 ACTACTACTACTACTACATCGTGTGT 58.448 38.462 1.58 1.87 44.95 3.72
113 114 6.900568 ACTACTACTACTACATCGTGTGTC 57.099 41.667 0.00 0.00 42.29 3.67
114 115 4.854361 ACTACTACTACATCGTGTGTCG 57.146 45.455 0.00 0.00 42.29 4.35
115 116 4.248859 ACTACTACTACATCGTGTGTCGT 58.751 43.478 0.00 3.48 42.29 4.34
116 117 5.410924 ACTACTACTACATCGTGTGTCGTA 58.589 41.667 0.00 4.34 42.29 3.43
118 119 4.854361 CTACTACATCGTGTGTCGTAGT 57.146 45.455 18.22 0.00 45.23 2.73
235 236 6.460953 GCCAAGGATTTTGAGCGGATTTATAA 60.461 38.462 0.00 0.00 0.00 0.98
237 238 6.319141 AGGATTTTGAGCGGATTTATAAGC 57.681 37.500 0.00 0.00 0.00 3.09
247 248 5.049129 AGCGGATTTATAAGCTTGATTCAGC 60.049 40.000 9.86 12.14 36.41 4.26
253 254 3.880846 GCTTGATTCAGCCGCCCG 61.881 66.667 0.00 0.00 33.21 6.13
254 255 2.125147 CTTGATTCAGCCGCCCGA 60.125 61.111 0.00 0.00 0.00 5.14
255 256 2.125147 TTGATTCAGCCGCCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
256 257 3.680620 TTGATTCAGCCGCCCGAGG 62.681 63.158 0.00 0.00 0.00 4.63
257 258 3.849951 GATTCAGCCGCCCGAGGA 61.850 66.667 0.00 0.00 0.00 3.71
331 332 0.744414 GCTAAATCAGCCGCACTCCA 60.744 55.000 0.00 0.00 45.23 3.86
332 333 1.009829 CTAAATCAGCCGCACTCCAC 58.990 55.000 0.00 0.00 0.00 4.02
334 335 0.957395 AAATCAGCCGCACTCCACTG 60.957 55.000 0.00 0.00 0.00 3.66
335 336 2.809861 AATCAGCCGCACTCCACTGG 62.810 60.000 0.00 0.00 0.00 4.00
336 337 4.320456 CAGCCGCACTCCACTGGT 62.320 66.667 0.00 0.00 0.00 4.00
337 338 4.008933 AGCCGCACTCCACTGGTC 62.009 66.667 0.00 0.00 0.00 4.02
355 363 3.515502 TGGTCTGGTTGGAACTAGAGATG 59.484 47.826 5.88 0.00 45.40 2.90
356 364 3.515901 GGTCTGGTTGGAACTAGAGATGT 59.484 47.826 5.88 0.00 45.40 3.06
361 374 4.469586 TGGTTGGAACTAGAGATGTATGCA 59.530 41.667 0.00 0.00 0.00 3.96
397 414 1.737735 CGCAATGACTGACCTCGCA 60.738 57.895 0.00 0.00 0.00 5.10
402 419 1.730501 ATGACTGACCTCGCATTGTG 58.269 50.000 0.00 0.00 0.00 3.33
424 441 2.824041 GCACCAGTACCCATGCCG 60.824 66.667 2.22 0.00 31.71 5.69
426 443 1.901820 CACCAGTACCCATGCCGTA 59.098 57.895 0.00 0.00 0.00 4.02
427 444 0.250793 CACCAGTACCCATGCCGTAA 59.749 55.000 0.00 0.00 0.00 3.18
428 445 1.134220 CACCAGTACCCATGCCGTAAT 60.134 52.381 0.00 0.00 0.00 1.89
429 446 1.140252 ACCAGTACCCATGCCGTAATC 59.860 52.381 0.00 0.00 0.00 1.75
430 447 1.140052 CCAGTACCCATGCCGTAATCA 59.860 52.381 0.00 0.00 0.00 2.57
431 448 2.224523 CCAGTACCCATGCCGTAATCAT 60.225 50.000 0.00 0.00 0.00 2.45
432 449 3.067106 CAGTACCCATGCCGTAATCATC 58.933 50.000 0.00 0.00 0.00 2.92
433 450 2.703536 AGTACCCATGCCGTAATCATCA 59.296 45.455 0.00 0.00 0.00 3.07
434 451 2.957402 ACCCATGCCGTAATCATCAT 57.043 45.000 0.00 0.00 0.00 2.45
440 457 4.456566 CCATGCCGTAATCATCATCATCAA 59.543 41.667 0.00 0.00 0.00 2.57
446 463 5.754890 CCGTAATCATCATCATCAACACTCA 59.245 40.000 0.00 0.00 0.00 3.41
454 471 8.042515 TCATCATCATCAACACTCAGAATACAA 58.957 33.333 0.00 0.00 0.00 2.41
455 472 7.601073 TCATCATCAACACTCAGAATACAAC 57.399 36.000 0.00 0.00 0.00 3.32
456 473 7.160726 TCATCATCAACACTCAGAATACAACA 58.839 34.615 0.00 0.00 0.00 3.33
457 474 7.332678 TCATCATCAACACTCAGAATACAACAG 59.667 37.037 0.00 0.00 0.00 3.16
458 475 6.524734 TCATCAACACTCAGAATACAACAGT 58.475 36.000 0.00 0.00 0.00 3.55
459 476 7.666623 TCATCAACACTCAGAATACAACAGTA 58.333 34.615 0.00 0.00 0.00 2.74
460 477 8.314021 TCATCAACACTCAGAATACAACAGTAT 58.686 33.333 0.00 0.00 0.00 2.12
480 497 6.485648 CAGTATGTAGGGGCAGTATTTTTACC 59.514 42.308 0.00 0.00 0.00 2.85
495 514 3.750639 TTTACCGTCAAATCGAATGGC 57.249 42.857 0.00 0.00 0.00 4.40
496 515 2.388310 TACCGTCAAATCGAATGGCA 57.612 45.000 6.93 0.00 0.00 4.92
497 516 0.802494 ACCGTCAAATCGAATGGCAC 59.198 50.000 6.93 0.00 0.00 5.01
498 517 0.247655 CCGTCAAATCGAATGGCACG 60.248 55.000 6.93 7.58 0.00 5.34
499 518 0.718904 CGTCAAATCGAATGGCACGA 59.281 50.000 2.56 2.56 43.65 4.35
502 521 1.999735 TCAAATCGAATGGCACGAGAC 59.000 47.619 6.37 0.00 42.81 3.36
505 540 3.554692 CGAATGGCACGAGACGGC 61.555 66.667 0.00 0.00 0.00 5.68
588 635 3.706698 GAAAGCAAAAGAAAAGAGCGGT 58.293 40.909 0.00 0.00 0.00 5.68
667 714 1.731720 CCTCGAGGGAAAAGAGCAAG 58.268 55.000 24.62 0.00 37.23 4.01
669 716 0.324943 TCGAGGGAAAAGAGCAAGGG 59.675 55.000 0.00 0.00 0.00 3.95
672 719 2.814097 CGAGGGAAAAGAGCAAGGGAAA 60.814 50.000 0.00 0.00 0.00 3.13
673 720 3.230976 GAGGGAAAAGAGCAAGGGAAAA 58.769 45.455 0.00 0.00 0.00 2.29
674 721 3.234353 AGGGAAAAGAGCAAGGGAAAAG 58.766 45.455 0.00 0.00 0.00 2.27
675 722 3.117131 AGGGAAAAGAGCAAGGGAAAAGA 60.117 43.478 0.00 0.00 0.00 2.52
676 723 3.256879 GGGAAAAGAGCAAGGGAAAAGAG 59.743 47.826 0.00 0.00 0.00 2.85
677 724 3.305676 GGAAAAGAGCAAGGGAAAAGAGC 60.306 47.826 0.00 0.00 0.00 4.09
678 725 2.664402 AAGAGCAAGGGAAAAGAGCA 57.336 45.000 0.00 0.00 0.00 4.26
679 726 2.664402 AGAGCAAGGGAAAAGAGCAA 57.336 45.000 0.00 0.00 0.00 3.91
680 727 3.166560 AGAGCAAGGGAAAAGAGCAAT 57.833 42.857 0.00 0.00 0.00 3.56
681 728 2.824341 AGAGCAAGGGAAAAGAGCAATG 59.176 45.455 0.00 0.00 0.00 2.82
682 729 1.274447 AGCAAGGGAAAAGAGCAATGC 59.726 47.619 0.00 0.00 0.00 3.56
683 730 1.001181 GCAAGGGAAAAGAGCAATGCA 59.999 47.619 8.35 0.00 33.00 3.96
684 731 2.548493 GCAAGGGAAAAGAGCAATGCAA 60.548 45.455 8.35 0.00 33.00 4.08
685 732 3.867216 GCAAGGGAAAAGAGCAATGCAAT 60.867 43.478 8.35 0.00 33.00 3.56
732 786 0.246635 TAAAGCCAGAGACCGAGCAC 59.753 55.000 0.00 0.00 0.00 4.40
733 787 2.771763 AAAGCCAGAGACCGAGCACG 62.772 60.000 0.00 0.00 39.43 5.34
770 860 3.688159 GCACCAGGGGACGTACGT 61.688 66.667 23.04 23.04 0.00 3.57
791 881 2.888513 CAGGATGCAAACAAGACTCG 57.111 50.000 0.00 0.00 0.00 4.18
803 893 0.103208 AAGACTCGGATCATGCGGAC 59.897 55.000 0.00 0.00 0.00 4.79
804 894 1.658717 GACTCGGATCATGCGGACG 60.659 63.158 0.00 0.00 0.00 4.79
805 895 2.355126 CTCGGATCATGCGGACGG 60.355 66.667 0.00 0.00 0.00 4.79
806 896 2.831284 TCGGATCATGCGGACGGA 60.831 61.111 0.00 0.00 0.00 4.69
807 897 2.658593 CGGATCATGCGGACGGAC 60.659 66.667 0.00 0.00 0.00 4.79
816 906 3.499737 CGGACGGACCAGCAATGC 61.500 66.667 0.00 0.00 38.90 3.56
837 927 3.939592 GCTAGTTTAGTTTGCTGGGTAGG 59.060 47.826 0.00 0.00 0.00 3.18
838 928 4.565028 GCTAGTTTAGTTTGCTGGGTAGGT 60.565 45.833 0.00 0.00 0.00 3.08
839 929 5.337813 GCTAGTTTAGTTTGCTGGGTAGGTA 60.338 44.000 0.00 0.00 0.00 3.08
840 930 5.161943 AGTTTAGTTTGCTGGGTAGGTAG 57.838 43.478 0.00 0.00 0.00 3.18
842 932 0.618981 AGTTTGCTGGGTAGGTAGCC 59.381 55.000 0.00 0.00 43.95 3.93
845 935 3.169242 GCTGGGTAGGTAGCCCCC 61.169 72.222 9.77 9.77 45.49 5.40
846 936 2.371043 CTGGGTAGGTAGCCCCCA 59.629 66.667 16.70 16.70 46.17 4.96
848 938 2.041596 GGGTAGGTAGCCCCCACA 59.958 66.667 11.44 0.00 40.26 4.17
849 939 1.617233 GGGTAGGTAGCCCCCACAA 60.617 63.158 11.44 0.00 40.26 3.33
851 941 1.605992 GTAGGTAGCCCCCACAACC 59.394 63.158 0.00 0.00 0.00 3.77
852 942 1.161355 TAGGTAGCCCCCACAACCA 59.839 57.895 0.00 0.00 34.29 3.67
853 943 0.912487 TAGGTAGCCCCCACAACCAG 60.912 60.000 0.00 0.00 34.29 4.00
854 944 2.355115 GTAGCCCCCACAACCAGG 59.645 66.667 0.00 0.00 0.00 4.45
855 945 2.938798 TAGCCCCCACAACCAGGG 60.939 66.667 0.00 0.00 46.36 4.45
875 965 4.699522 GGCAAAGCTCGGGTCCGT 62.700 66.667 9.36 0.00 40.74 4.69
876 966 3.119096 GCAAAGCTCGGGTCCGTC 61.119 66.667 9.36 3.20 40.74 4.79
877 967 2.657237 CAAAGCTCGGGTCCGTCT 59.343 61.111 9.36 5.37 40.74 4.18
878 968 1.004918 CAAAGCTCGGGTCCGTCTT 60.005 57.895 9.36 10.64 40.74 3.01
879 969 1.014564 CAAAGCTCGGGTCCGTCTTC 61.015 60.000 9.36 0.00 40.74 2.87
880 970 2.488087 AAAGCTCGGGTCCGTCTTCG 62.488 60.000 9.36 0.00 40.74 3.79
897 987 2.504274 CGGTATAAGAGCGCCCCCA 61.504 63.158 2.29 0.00 43.00 4.96
934 1028 3.645268 ATTTCTGCCCGTCCCAGCC 62.645 63.158 0.00 0.00 0.00 4.85
968 1064 2.813042 GAGCGAGTGAGGCACAGC 60.813 66.667 9.07 9.07 39.32 4.40
969 1065 4.731612 AGCGAGTGAGGCACAGCG 62.732 66.667 10.64 9.34 42.05 5.18
974 1070 3.044305 GTGAGGCACAGCGACCAC 61.044 66.667 0.00 0.00 34.08 4.16
984 1080 0.737715 CAGCGACCACAGAGCTTACC 60.738 60.000 0.00 0.00 39.48 2.85
994 1100 3.741830 GAGCTTACCAGGCGAGGGC 62.742 68.421 4.11 0.00 38.90 5.19
1029 1135 1.154221 GCGAGGGGAGGAGGTCTAT 59.846 63.158 0.00 0.00 0.00 1.98
1057 1163 1.689575 GGCTGGAGGAGGAGTACATCA 60.690 57.143 0.00 0.00 0.00 3.07
1347 1459 2.978010 CCGGCCAACTCGTGCTTT 60.978 61.111 2.24 0.00 0.00 3.51
1587 1702 2.184167 CGACAAGCACGGTTTGGGT 61.184 57.895 5.71 0.00 0.00 4.51
1596 1711 0.481128 ACGGTTTGGGTGGAAAGGAT 59.519 50.000 0.00 0.00 0.00 3.24
1612 1733 2.447379 ATCTCTCCGGCCATGGCT 60.447 61.111 34.70 11.04 41.60 4.75
1614 1735 1.476007 ATCTCTCCGGCCATGGCTAC 61.476 60.000 34.70 19.13 41.60 3.58
1615 1736 3.506059 CTCTCCGGCCATGGCTACG 62.506 68.421 34.70 28.69 41.60 3.51
1780 1901 1.766864 TCCAACAAGACGTCCCCCA 60.767 57.895 13.01 0.00 0.00 4.96
1879 2006 4.813526 CGAGCGACTCCGACGGTG 62.814 72.222 14.79 14.46 41.38 4.94
1880 2007 4.477975 GAGCGACTCCGACGGTGG 62.478 72.222 19.33 13.23 41.38 4.61
2100 2227 0.675083 AGCTCATCGAGATCTGCAGG 59.325 55.000 15.13 0.00 0.00 4.85
2102 2229 1.039068 CTCATCGAGATCTGCAGGGT 58.961 55.000 15.13 2.64 0.00 4.34
2103 2230 0.749049 TCATCGAGATCTGCAGGGTG 59.251 55.000 15.13 3.70 0.00 4.61
2110 2237 0.461548 GATCTGCAGGGTGTGATCGA 59.538 55.000 15.13 0.00 0.00 3.59
2112 2239 1.448540 CTGCAGGGTGTGATCGACC 60.449 63.158 5.57 5.33 0.00 4.79
2113 2240 2.509336 GCAGGGTGTGATCGACCG 60.509 66.667 7.46 0.00 33.89 4.79
2114 2241 3.001902 GCAGGGTGTGATCGACCGA 62.002 63.158 7.46 0.00 33.89 4.69
2115 2242 1.816537 CAGGGTGTGATCGACCGAT 59.183 57.895 4.42 4.42 37.59 4.18
2129 2256 2.579787 CGATCCGTCGGTGCTGTC 60.580 66.667 11.88 2.70 44.00 3.51
2187 2314 4.686191 TGCATTCTGGAAATTTTGTGGT 57.314 36.364 0.00 0.00 0.00 4.16
2188 2315 5.798125 TGCATTCTGGAAATTTTGTGGTA 57.202 34.783 0.00 0.00 0.00 3.25
2191 2318 5.863935 GCATTCTGGAAATTTTGTGGTACTC 59.136 40.000 0.00 0.00 0.00 2.59
2269 2401 7.556844 ACTAAACCACATCTGATTAGTACAGG 58.443 38.462 0.00 0.00 35.62 4.00
2270 2402 4.408182 ACCACATCTGATTAGTACAGGC 57.592 45.455 0.00 0.00 36.22 4.85
2271 2403 3.774766 ACCACATCTGATTAGTACAGGCA 59.225 43.478 0.00 0.00 36.22 4.75
2272 2404 4.410228 ACCACATCTGATTAGTACAGGCAT 59.590 41.667 0.00 0.00 36.22 4.40
2273 2405 4.753610 CCACATCTGATTAGTACAGGCATG 59.246 45.833 0.00 0.00 36.22 4.06
2274 2406 5.453762 CCACATCTGATTAGTACAGGCATGA 60.454 44.000 4.84 0.00 36.22 3.07
2275 2407 5.695363 CACATCTGATTAGTACAGGCATGAG 59.305 44.000 4.84 0.00 36.22 2.90
2276 2408 5.365025 ACATCTGATTAGTACAGGCATGAGT 59.635 40.000 4.84 0.00 36.22 3.41
2277 2409 6.551227 ACATCTGATTAGTACAGGCATGAGTA 59.449 38.462 4.84 0.00 36.22 2.59
2278 2410 6.392625 TCTGATTAGTACAGGCATGAGTAC 57.607 41.667 4.84 12.77 40.60 2.73
2297 2429 7.972527 TGAGTACAGTACGAGTAGATTCTTTC 58.027 38.462 5.02 0.00 0.00 2.62
2310 2442 9.783256 GAGTAGATTCTTTCTCTGACTCTTAAC 57.217 37.037 0.00 0.00 35.79 2.01
2351 2491 8.818860 AGTATGGTAACCACTAAACAACATCTA 58.181 33.333 0.00 0.00 35.80 1.98
2352 2492 9.439500 GTATGGTAACCACTAAACAACATCTAA 57.561 33.333 0.00 0.00 35.80 2.10
2434 2574 4.172505 CCTGAGAAGAGATCACAAAGTCG 58.827 47.826 0.00 0.00 0.00 4.18
2438 2578 3.256879 AGAAGAGATCACAAAGTCGAGCA 59.743 43.478 0.00 0.00 0.00 4.26
2441 2581 2.408050 AGATCACAAAGTCGAGCACAC 58.592 47.619 0.00 0.00 0.00 3.82
2507 2651 1.954382 CGTATCAGTCGATCCTTCCCA 59.046 52.381 0.00 0.00 32.73 4.37
2538 2682 1.726791 CGAGTGTGAAAATGACCTCCG 59.273 52.381 0.00 0.00 0.00 4.63
2566 2715 0.388907 CCCACCGCTTGCATTTCTTG 60.389 55.000 0.00 0.00 0.00 3.02
2572 2721 2.159599 CCGCTTGCATTTCTTGAGAGAC 60.160 50.000 0.00 0.00 0.00 3.36
2586 2735 8.740123 TTCTTGAGAGACTATAGACTGTAAGG 57.260 38.462 9.53 0.00 39.30 2.69
2596 2745 1.809684 GACTGTAAGGCCAACTCCAC 58.190 55.000 5.01 0.00 33.95 4.02
2597 2746 0.400594 ACTGTAAGGCCAACTCCACC 59.599 55.000 5.01 0.00 39.30 4.61
2598 2747 0.673644 CTGTAAGGCCAACTCCACCG 60.674 60.000 5.01 0.00 0.00 4.94
2599 2748 2.038837 GTAAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 0.00 5.68
2600 2749 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
2610 2759 4.944372 CCACCGCGCGACCCTATC 62.944 72.222 34.63 0.00 0.00 2.08
2611 2760 4.944372 CACCGCGCGACCCTATCC 62.944 72.222 34.63 0.00 0.00 2.59
2613 2762 4.647615 CCGCGCGACCCTATCCTG 62.648 72.222 34.63 6.11 0.00 3.86
2614 2763 3.900892 CGCGCGACCCTATCCTGT 61.901 66.667 28.94 0.00 0.00 4.00
2615 2764 2.027751 GCGCGACCCTATCCTGTC 59.972 66.667 12.10 0.00 0.00 3.51
2616 2765 2.728817 CGCGACCCTATCCTGTCC 59.271 66.667 0.00 0.00 0.00 4.02
2617 2766 2.728817 GCGACCCTATCCTGTCCG 59.271 66.667 0.00 0.00 0.00 4.79
2618 2767 2.857744 GCGACCCTATCCTGTCCGG 61.858 68.421 0.00 0.00 0.00 5.14
2619 2768 2.857744 CGACCCTATCCTGTCCGGC 61.858 68.421 0.00 0.00 0.00 6.13
2620 2769 1.457831 GACCCTATCCTGTCCGGCT 60.458 63.158 0.00 0.00 0.00 5.52
2621 2770 1.003051 ACCCTATCCTGTCCGGCTT 59.997 57.895 0.00 0.00 0.00 4.35
2622 2771 1.049289 ACCCTATCCTGTCCGGCTTC 61.049 60.000 0.00 0.00 0.00 3.86
2623 2772 1.364171 CCTATCCTGTCCGGCTTCG 59.636 63.158 0.00 0.00 0.00 3.79
2624 2773 1.392710 CCTATCCTGTCCGGCTTCGT 61.393 60.000 0.00 0.00 0.00 3.85
2625 2774 0.030908 CTATCCTGTCCGGCTTCGTC 59.969 60.000 0.00 0.00 0.00 4.20
2626 2775 1.389609 TATCCTGTCCGGCTTCGTCC 61.390 60.000 0.00 0.00 0.00 4.79
2633 2782 3.419759 CGGCTTCGTCCGTTTGGG 61.420 66.667 5.59 0.00 44.18 4.12
2634 2783 3.053896 GGCTTCGTCCGTTTGGGG 61.054 66.667 0.00 0.00 36.01 4.96
2635 2784 2.281276 GCTTCGTCCGTTTGGGGT 60.281 61.111 0.00 0.00 36.01 4.95
2636 2785 1.004679 GCTTCGTCCGTTTGGGGTA 60.005 57.895 0.00 0.00 36.01 3.69
2637 2786 0.603439 GCTTCGTCCGTTTGGGGTAA 60.603 55.000 0.00 0.00 36.01 2.85
2638 2787 1.881591 CTTCGTCCGTTTGGGGTAAA 58.118 50.000 0.00 0.00 36.01 2.01
2639 2788 2.220313 CTTCGTCCGTTTGGGGTAAAA 58.780 47.619 0.00 0.00 36.01 1.52
2640 2789 1.881591 TCGTCCGTTTGGGGTAAAAG 58.118 50.000 0.00 0.00 36.01 2.27
2641 2790 0.876399 CGTCCGTTTGGGGTAAAAGG 59.124 55.000 0.00 0.00 45.73 3.11
2645 2794 2.308690 CCGTTTGGGGTAAAAGGAACA 58.691 47.619 0.00 0.00 46.84 3.18
2646 2795 2.694109 CCGTTTGGGGTAAAAGGAACAA 59.306 45.455 0.00 0.00 46.84 2.83
2647 2796 3.132467 CCGTTTGGGGTAAAAGGAACAAA 59.868 43.478 0.00 0.00 46.84 2.83
2648 2797 4.382793 CCGTTTGGGGTAAAAGGAACAAAA 60.383 41.667 0.00 0.00 46.84 2.44
2649 2798 4.806775 CGTTTGGGGTAAAAGGAACAAAAG 59.193 41.667 0.00 0.00 30.73 2.27
2650 2799 5.394333 CGTTTGGGGTAAAAGGAACAAAAGA 60.394 40.000 0.00 0.00 31.95 2.52
2651 2800 5.862678 TTGGGGTAAAAGGAACAAAAGAG 57.137 39.130 0.00 0.00 0.00 2.85
2652 2801 5.132043 TGGGGTAAAAGGAACAAAAGAGA 57.868 39.130 0.00 0.00 0.00 3.10
2653 2802 5.711698 TGGGGTAAAAGGAACAAAAGAGAT 58.288 37.500 0.00 0.00 0.00 2.75
2654 2803 5.538433 TGGGGTAAAAGGAACAAAAGAGATG 59.462 40.000 0.00 0.00 0.00 2.90
2655 2804 5.047306 GGGGTAAAAGGAACAAAAGAGATGG 60.047 44.000 0.00 0.00 0.00 3.51
2656 2805 5.538813 GGGTAAAAGGAACAAAAGAGATGGT 59.461 40.000 0.00 0.00 0.00 3.55
2657 2806 6.294564 GGGTAAAAGGAACAAAAGAGATGGTC 60.295 42.308 0.00 0.00 33.66 4.02
2661 2810 3.839051 GAACAAAAGAGATGGTCCAGC 57.161 47.619 0.00 0.00 0.00 4.85
2662 2811 1.813513 ACAAAAGAGATGGTCCAGCG 58.186 50.000 0.43 0.00 0.00 5.18
2663 2812 0.449388 CAAAAGAGATGGTCCAGCGC 59.551 55.000 2.17 2.17 0.00 5.92
2664 2813 0.036732 AAAAGAGATGGTCCAGCGCA 59.963 50.000 13.58 0.00 0.00 6.09
2665 2814 0.674895 AAAGAGATGGTCCAGCGCAC 60.675 55.000 13.58 0.00 0.00 5.34
2666 2815 2.842394 AAGAGATGGTCCAGCGCACG 62.842 60.000 13.58 0.00 0.00 5.34
2667 2816 4.457496 AGATGGTCCAGCGCACGG 62.457 66.667 11.47 10.32 0.00 4.94
2675 2824 4.389576 CAGCGCACGGCCTCAAAC 62.390 66.667 11.47 0.00 45.17 2.93
2679 2828 3.723348 GCACGGCCTCAAACGGAC 61.723 66.667 0.00 0.00 0.00 4.79
2680 2829 2.280524 CACGGCCTCAAACGGACA 60.281 61.111 0.00 0.00 30.13 4.02
2681 2830 1.890041 CACGGCCTCAAACGGACAA 60.890 57.895 0.00 0.00 30.13 3.18
2682 2831 1.072505 ACGGCCTCAAACGGACAAT 59.927 52.632 0.00 0.00 30.13 2.71
2683 2832 0.536460 ACGGCCTCAAACGGACAATT 60.536 50.000 0.00 0.00 30.13 2.32
2684 2833 0.109781 CGGCCTCAAACGGACAATTG 60.110 55.000 3.24 3.24 30.13 2.32
2685 2834 0.958822 GGCCTCAAACGGACAATTGT 59.041 50.000 11.78 11.78 30.13 2.71
2686 2835 1.068541 GGCCTCAAACGGACAATTGTC 60.069 52.381 27.16 27.16 44.04 3.18
2696 2845 1.734163 GACAATTGTCCGGATTCCGT 58.266 50.000 25.26 1.21 46.80 4.69
2697 2846 1.664151 GACAATTGTCCGGATTCCGTC 59.336 52.381 25.26 15.53 46.80 4.79
2698 2847 1.014352 CAATTGTCCGGATTCCGTCC 58.986 55.000 22.83 13.25 46.80 4.79
2716 2865 3.899395 GTTTTCGACCCATCCCCG 58.101 61.111 0.00 0.00 0.00 5.73
2717 2866 1.297364 GTTTTCGACCCATCCCCGA 59.703 57.895 0.00 0.00 0.00 5.14
2718 2867 1.022982 GTTTTCGACCCATCCCCGAC 61.023 60.000 0.00 0.00 31.60 4.79
2719 2868 2.510064 TTTTCGACCCATCCCCGACG 62.510 60.000 0.00 0.00 31.60 5.12
2722 2871 4.530857 GACCCATCCCCGACGCAG 62.531 72.222 0.00 0.00 0.00 5.18
2725 2874 4.096003 CCATCCCCGACGCAGGTT 62.096 66.667 2.53 0.00 0.00 3.50
2726 2875 2.819595 CATCCCCGACGCAGGTTG 60.820 66.667 2.53 1.46 0.00 3.77
2727 2876 4.096003 ATCCCCGACGCAGGTTGG 62.096 66.667 2.53 0.00 45.96 3.77
3045 3194 3.066190 CGCCTGTCGGGGACACTA 61.066 66.667 0.00 0.00 45.63 2.74
3046 3195 2.893398 GCCTGTCGGGGACACTAG 59.107 66.667 0.00 0.00 37.67 2.57
3047 3196 2.893398 CCTGTCGGGGACACTAGC 59.107 66.667 0.00 0.00 37.67 3.42
3048 3197 1.982395 CCTGTCGGGGACACTAGCA 60.982 63.158 0.00 0.00 37.67 3.49
3049 3198 1.513158 CTGTCGGGGACACTAGCAG 59.487 63.158 0.00 0.00 37.67 4.24
3050 3199 1.228769 TGTCGGGGACACTAGCAGT 60.229 57.895 0.00 0.00 37.67 4.40
3051 3200 1.248785 TGTCGGGGACACTAGCAGTC 61.249 60.000 7.26 7.26 37.67 3.51
3057 3206 1.810532 GACACTAGCAGTCCCTCCG 59.189 63.158 4.92 0.00 0.00 4.63
3058 3207 2.286127 GACACTAGCAGTCCCTCCGC 62.286 65.000 4.92 0.00 0.00 5.54
3059 3208 2.055042 CACTAGCAGTCCCTCCGCT 61.055 63.158 0.00 0.00 39.80 5.52
3060 3209 1.755008 ACTAGCAGTCCCTCCGCTC 60.755 63.158 0.00 0.00 37.20 5.03
3061 3210 2.442272 TAGCAGTCCCTCCGCTCC 60.442 66.667 0.00 0.00 37.20 4.70
3064 3213 3.003173 CAGTCCCTCCGCTCCCAA 61.003 66.667 0.00 0.00 0.00 4.12
3065 3214 3.003763 AGTCCCTCCGCTCCCAAC 61.004 66.667 0.00 0.00 0.00 3.77
3066 3215 4.452733 GTCCCTCCGCTCCCAACG 62.453 72.222 0.00 0.00 0.00 4.10
3068 3217 4.016706 CCCTCCGCTCCCAACGTT 62.017 66.667 0.00 0.00 0.00 3.99
3069 3218 2.032071 CCTCCGCTCCCAACGTTT 59.968 61.111 0.00 0.00 0.00 3.60
3070 3219 2.033194 CCTCCGCTCCCAACGTTTC 61.033 63.158 0.00 0.00 0.00 2.78
3071 3220 1.301401 CTCCGCTCCCAACGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
3072 3221 1.566018 CTCCGCTCCCAACGTTTCAC 61.566 60.000 0.00 0.00 0.00 3.18
3073 3222 2.613506 CCGCTCCCAACGTTTCACC 61.614 63.158 0.00 0.00 0.00 4.02
3074 3223 2.613506 CGCTCCCAACGTTTCACCC 61.614 63.158 0.00 0.00 0.00 4.61
3075 3224 1.228154 GCTCCCAACGTTTCACCCT 60.228 57.895 0.00 0.00 0.00 4.34
3076 3225 1.235281 GCTCCCAACGTTTCACCCTC 61.235 60.000 0.00 0.00 0.00 4.30
3077 3226 0.396811 CTCCCAACGTTTCACCCTCT 59.603 55.000 0.00 0.00 0.00 3.69
3078 3227 0.395312 TCCCAACGTTTCACCCTCTC 59.605 55.000 0.00 0.00 0.00 3.20
3079 3228 0.396811 CCCAACGTTTCACCCTCTCT 59.603 55.000 0.00 0.00 0.00 3.10
3080 3229 1.608283 CCCAACGTTTCACCCTCTCTC 60.608 57.143 0.00 0.00 0.00 3.20
3081 3230 1.608283 CCAACGTTTCACCCTCTCTCC 60.608 57.143 0.00 0.00 0.00 3.71
3082 3231 0.685660 AACGTTTCACCCTCTCTCCC 59.314 55.000 0.00 0.00 0.00 4.30
3083 3232 1.192803 ACGTTTCACCCTCTCTCCCC 61.193 60.000 0.00 0.00 0.00 4.81
3084 3233 1.597461 GTTTCACCCTCTCTCCCCG 59.403 63.158 0.00 0.00 0.00 5.73
3085 3234 2.291043 TTTCACCCTCTCTCCCCGC 61.291 63.158 0.00 0.00 0.00 6.13
3086 3235 4.779733 TCACCCTCTCTCCCCGCC 62.780 72.222 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.560819 CGTGCATTTGTTTATTTATGCCGT 59.439 37.500 0.00 0.00 41.98 5.68
1 2 4.547966 GCGTGCATTTGTTTATTTATGCCG 60.548 41.667 0.00 0.00 41.98 5.69
2 3 4.328440 TGCGTGCATTTGTTTATTTATGCC 59.672 37.500 0.00 0.00 41.98 4.40
3 4 5.247340 GTGCGTGCATTTGTTTATTTATGC 58.753 37.500 0.00 0.00 42.75 3.14
4 5 5.060323 ACGTGCGTGCATTTGTTTATTTATG 59.940 36.000 0.00 0.00 0.00 1.90
15 16 0.435769 GTACGTACGTGCGTGCATTT 59.564 50.000 36.35 15.07 45.33 2.32
31 32 1.017701 GTGCTTGCGGGTAGTGGTAC 61.018 60.000 0.00 0.00 0.00 3.34
32 33 1.294138 GTGCTTGCGGGTAGTGGTA 59.706 57.895 0.00 0.00 0.00 3.25
33 34 2.032071 GTGCTTGCGGGTAGTGGT 59.968 61.111 0.00 0.00 0.00 4.16
34 35 2.031919 TGTGCTTGCGGGTAGTGG 59.968 61.111 0.00 0.00 0.00 4.00
35 36 1.596752 TGTGTGCTTGCGGGTAGTG 60.597 57.895 0.00 0.00 0.00 2.74
51 52 2.778299 TCAATTTTCTAGCTGCCGTGT 58.222 42.857 0.00 0.00 0.00 4.49
84 85 8.908903 ACACGATGTAGTAGTAGTAGTAGTAGT 58.091 37.037 5.34 5.34 0.00 2.73
85 86 9.179552 CACACGATGTAGTAGTAGTAGTAGTAG 57.820 40.741 0.00 0.00 0.00 2.57
86 87 8.687242 ACACACGATGTAGTAGTAGTAGTAGTA 58.313 37.037 0.00 0.00 40.88 1.82
87 88 7.551585 ACACACGATGTAGTAGTAGTAGTAGT 58.448 38.462 0.00 0.00 40.88 2.73
88 89 7.096681 CGACACACGATGTAGTAGTAGTAGTAG 60.097 44.444 0.00 0.00 43.56 2.57
89 90 6.693113 CGACACACGATGTAGTAGTAGTAGTA 59.307 42.308 0.00 0.00 43.56 1.82
90 91 5.518128 CGACACACGATGTAGTAGTAGTAGT 59.482 44.000 0.00 0.00 43.56 2.73
91 92 5.518128 ACGACACACGATGTAGTAGTAGTAG 59.482 44.000 8.14 0.00 44.42 2.57
92 93 5.410924 ACGACACACGATGTAGTAGTAGTA 58.589 41.667 8.14 0.00 44.42 1.82
93 94 4.248859 ACGACACACGATGTAGTAGTAGT 58.751 43.478 8.14 0.00 44.42 2.73
101 102 2.336667 TCGACTACGACACACGATGTA 58.663 47.619 0.00 0.00 43.56 2.29
103 104 3.961570 TCGACTACGACACACGATG 57.038 52.632 0.00 0.00 43.81 3.84
113 114 2.473816 ACAATGCATGGATCGACTACG 58.526 47.619 8.45 0.00 41.26 3.51
114 115 4.882671 AAACAATGCATGGATCGACTAC 57.117 40.909 8.45 0.00 0.00 2.73
115 116 5.182950 ACAAAAACAATGCATGGATCGACTA 59.817 36.000 8.45 0.00 0.00 2.59
116 117 4.022068 ACAAAAACAATGCATGGATCGACT 60.022 37.500 8.45 0.00 0.00 4.18
117 118 4.236935 ACAAAAACAATGCATGGATCGAC 58.763 39.130 8.45 0.00 0.00 4.20
118 119 4.517952 ACAAAAACAATGCATGGATCGA 57.482 36.364 8.45 0.00 0.00 3.59
161 162 2.118404 CGAGGAGAGAAGCTCGGCT 61.118 63.158 0.00 0.00 44.91 5.52
162 163 1.658686 TTCGAGGAGAGAAGCTCGGC 61.659 60.000 0.00 0.00 44.91 5.54
163 164 1.028905 ATTCGAGGAGAGAAGCTCGG 58.971 55.000 0.00 0.00 44.91 4.63
164 165 2.726633 GAATTCGAGGAGAGAAGCTCG 58.273 52.381 0.00 0.00 44.91 5.03
235 236 2.439156 GGGCGGCTGAATCAAGCT 60.439 61.111 9.56 0.00 43.06 3.74
237 238 2.125147 TCGGGCGGCTGAATCAAG 60.125 61.111 19.50 0.00 0.00 3.02
253 254 1.034838 TTCTGCTCGCTCCTCTCCTC 61.035 60.000 0.00 0.00 0.00 3.71
254 255 1.000270 TTCTGCTCGCTCCTCTCCT 60.000 57.895 0.00 0.00 0.00 3.69
255 256 1.140804 GTTCTGCTCGCTCCTCTCC 59.859 63.158 0.00 0.00 0.00 3.71
256 257 0.179140 CTGTTCTGCTCGCTCCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
257 258 0.610509 TCTGTTCTGCTCGCTCCTCT 60.611 55.000 0.00 0.00 0.00 3.69
291 292 2.434843 TATCTGCACTGGCCCGGAG 61.435 63.158 0.73 0.00 40.13 4.63
325 326 0.250467 CCAACCAGACCAGTGGAGTG 60.250 60.000 18.40 12.19 40.44 3.51
328 329 0.472471 GTTCCAACCAGACCAGTGGA 59.528 55.000 18.40 0.00 40.44 4.02
329 330 0.474184 AGTTCCAACCAGACCAGTGG 59.526 55.000 7.91 7.91 44.01 4.00
331 332 2.900546 CTCTAGTTCCAACCAGACCAGT 59.099 50.000 0.00 0.00 0.00 4.00
332 333 3.165875 TCTCTAGTTCCAACCAGACCAG 58.834 50.000 0.00 0.00 0.00 4.00
334 335 3.515901 ACATCTCTAGTTCCAACCAGACC 59.484 47.826 0.00 0.00 0.00 3.85
335 336 4.810191 ACATCTCTAGTTCCAACCAGAC 57.190 45.455 0.00 0.00 0.00 3.51
336 337 5.163405 GCATACATCTCTAGTTCCAACCAGA 60.163 44.000 0.00 0.00 0.00 3.86
337 338 5.053145 GCATACATCTCTAGTTCCAACCAG 58.947 45.833 0.00 0.00 0.00 4.00
355 363 2.666619 GCAATTAGGAGCGCATGCATAC 60.667 50.000 19.57 6.23 46.23 2.39
356 364 1.536766 GCAATTAGGAGCGCATGCATA 59.463 47.619 19.57 0.00 46.23 3.14
361 374 0.882042 CGAGGCAATTAGGAGCGCAT 60.882 55.000 11.47 0.00 0.00 4.73
402 419 1.134946 GCATGGGTACTGGTGCAAATC 59.865 52.381 10.54 0.00 37.52 2.17
412 429 2.703536 TGATGATTACGGCATGGGTACT 59.296 45.455 0.00 0.00 0.00 2.73
424 441 8.429493 TTCTGAGTGTTGATGATGATGATTAC 57.571 34.615 0.00 0.00 0.00 1.89
426 443 9.053840 GTATTCTGAGTGTTGATGATGATGATT 57.946 33.333 0.00 0.00 0.00 2.57
427 444 8.208903 TGTATTCTGAGTGTTGATGATGATGAT 58.791 33.333 0.00 0.00 0.00 2.45
428 445 7.558604 TGTATTCTGAGTGTTGATGATGATGA 58.441 34.615 0.00 0.00 0.00 2.92
429 446 7.781548 TGTATTCTGAGTGTTGATGATGATG 57.218 36.000 0.00 0.00 0.00 3.07
430 447 7.825761 TGTTGTATTCTGAGTGTTGATGATGAT 59.174 33.333 0.00 0.00 0.00 2.45
431 448 7.160726 TGTTGTATTCTGAGTGTTGATGATGA 58.839 34.615 0.00 0.00 0.00 2.92
432 449 7.118825 ACTGTTGTATTCTGAGTGTTGATGATG 59.881 37.037 0.00 0.00 0.00 3.07
433 450 7.164122 ACTGTTGTATTCTGAGTGTTGATGAT 58.836 34.615 0.00 0.00 0.00 2.45
434 451 6.524734 ACTGTTGTATTCTGAGTGTTGATGA 58.475 36.000 0.00 0.00 0.00 2.92
440 457 7.363880 CCCTACATACTGTTGTATTCTGAGTGT 60.364 40.741 0.00 0.00 37.28 3.55
446 463 4.719773 TGCCCCTACATACTGTTGTATTCT 59.280 41.667 0.00 0.00 37.28 2.40
454 471 5.710409 AAAATACTGCCCCTACATACTGT 57.290 39.130 0.00 0.00 0.00 3.55
455 472 6.485648 GGTAAAAATACTGCCCCTACATACTG 59.514 42.308 0.00 0.00 0.00 2.74
456 473 6.598503 GGTAAAAATACTGCCCCTACATACT 58.401 40.000 0.00 0.00 0.00 2.12
457 474 5.467735 CGGTAAAAATACTGCCCCTACATAC 59.532 44.000 0.00 0.00 0.00 2.39
458 475 5.130809 ACGGTAAAAATACTGCCCCTACATA 59.869 40.000 0.00 0.00 0.00 2.29
459 476 4.080186 ACGGTAAAAATACTGCCCCTACAT 60.080 41.667 0.00 0.00 0.00 2.29
460 477 3.263937 ACGGTAAAAATACTGCCCCTACA 59.736 43.478 0.00 0.00 0.00 2.74
466 483 5.025826 CGATTTGACGGTAAAAATACTGCC 58.974 41.667 0.00 0.00 0.00 4.85
480 497 0.718904 TCGTGCCATTCGATTTGACG 59.281 50.000 0.00 0.00 32.30 4.35
495 514 3.757623 GCTATCTAGCCGTCTCGTG 57.242 57.895 0.00 0.00 43.39 4.35
505 540 2.223923 GCATGGCTATCGGGCTATCTAG 60.224 54.545 0.00 0.00 41.48 2.43
585 632 4.275196 TGACTGATTACTCGATTAGGACCG 59.725 45.833 0.00 0.00 0.00 4.79
586 633 5.299782 AGTGACTGATTACTCGATTAGGACC 59.700 44.000 0.00 0.00 0.00 4.46
588 635 7.226918 CACTAGTGACTGATTACTCGATTAGGA 59.773 40.741 18.45 0.00 0.00 2.94
667 714 2.004733 GCATTGCATTGCTCTTTTCCC 58.995 47.619 22.94 0.00 39.57 3.97
669 716 2.091588 CACGCATTGCATTGCTCTTTTC 59.908 45.455 26.02 1.93 40.54 2.29
672 719 0.108992 CCACGCATTGCATTGCTCTT 60.109 50.000 26.02 11.38 40.54 2.85
673 720 0.961857 TCCACGCATTGCATTGCTCT 60.962 50.000 26.02 11.99 40.54 4.09
674 721 0.524816 CTCCACGCATTGCATTGCTC 60.525 55.000 26.02 4.47 40.54 4.26
675 722 1.509463 CTCCACGCATTGCATTGCT 59.491 52.632 26.02 13.66 40.54 3.91
676 723 1.517694 CCTCCACGCATTGCATTGC 60.518 57.895 20.91 20.91 39.29 3.56
677 724 1.140161 CCCTCCACGCATTGCATTG 59.860 57.895 9.69 4.20 0.00 2.82
678 725 2.053865 CCCCTCCACGCATTGCATT 61.054 57.895 9.69 0.00 0.00 3.56
679 726 2.440796 CCCCTCCACGCATTGCAT 60.441 61.111 9.69 0.00 0.00 3.96
680 727 4.738998 CCCCCTCCACGCATTGCA 62.739 66.667 9.69 0.00 0.00 4.08
732 786 0.657312 TTGTTTGCTCACTGTCTGCG 59.343 50.000 0.00 0.00 0.00 5.18
733 787 2.724349 CTTTGTTTGCTCACTGTCTGC 58.276 47.619 0.00 0.00 0.00 4.26
791 881 2.280186 GGTCCGTCCGCATGATCC 60.280 66.667 0.00 0.00 0.00 3.36
807 897 4.168760 GCAAACTAAACTAGCATTGCTGG 58.831 43.478 21.31 20.23 43.18 4.85
816 906 5.161943 ACCTACCCAGCAAACTAAACTAG 57.838 43.478 0.00 0.00 0.00 2.57
837 927 2.355115 CCTGGTTGTGGGGGCTAC 59.645 66.667 0.00 0.00 0.00 3.58
838 928 2.938798 CCCTGGTTGTGGGGGCTA 60.939 66.667 0.00 0.00 40.97 3.93
846 936 4.531426 TTTGCCCGCCCTGGTTGT 62.531 61.111 0.00 0.00 35.15 3.32
859 949 3.119096 GACGGACCCGAGCTTTGC 61.119 66.667 16.07 0.00 42.83 3.68
873 963 1.396644 GCGCTCTTATACCGAAGACG 58.603 55.000 0.00 0.00 35.22 4.18
874 964 1.602416 GGGCGCTCTTATACCGAAGAC 60.602 57.143 7.64 0.00 32.05 3.01
875 965 0.672342 GGGCGCTCTTATACCGAAGA 59.328 55.000 7.64 0.00 34.30 2.87
876 966 0.319641 GGGGCGCTCTTATACCGAAG 60.320 60.000 7.48 0.00 0.00 3.79
877 967 1.744014 GGGGCGCTCTTATACCGAA 59.256 57.895 7.48 0.00 0.00 4.30
878 968 2.205152 GGGGGCGCTCTTATACCGA 61.205 63.158 7.48 0.00 0.00 4.69
879 969 2.342648 GGGGGCGCTCTTATACCG 59.657 66.667 7.48 0.00 0.00 4.02
880 970 1.070957 GTGGGGGCGCTCTTATACC 59.929 63.158 7.48 0.00 0.00 2.73
881 971 1.070957 GGTGGGGGCGCTCTTATAC 59.929 63.158 7.48 0.88 0.00 1.47
882 972 2.144738 GGGTGGGGGCGCTCTTATA 61.145 63.158 7.48 0.00 0.00 0.98
897 987 2.043652 GCAGTGGCATCCATGGGT 60.044 61.111 13.02 0.00 40.72 4.51
934 1028 2.505777 CCGCTGCTCTCGACACTG 60.506 66.667 0.00 0.00 0.00 3.66
937 1031 4.121669 GCTCCGCTGCTCTCGACA 62.122 66.667 0.00 0.00 0.00 4.35
965 1061 0.737715 GGTAAGCTCTGTGGTCGCTG 60.738 60.000 0.00 0.00 33.64 5.18
968 1064 0.108615 CCTGGTAAGCTCTGTGGTCG 60.109 60.000 0.00 0.00 0.00 4.79
969 1065 0.391793 GCCTGGTAAGCTCTGTGGTC 60.392 60.000 0.00 0.00 0.00 4.02
974 1070 1.142748 CCTCGCCTGGTAAGCTCTG 59.857 63.158 0.00 0.00 0.00 3.35
984 1080 3.842923 ATCGTCAGCCCTCGCCTG 61.843 66.667 0.00 0.00 34.57 4.85
994 1100 2.584418 CCTGCTCGCCATCGTCAG 60.584 66.667 0.00 0.00 37.24 3.51
1057 1163 2.971598 CGGGGCTCAGGTCCATGTT 61.972 63.158 0.00 0.00 39.39 2.71
1587 1702 1.338136 GGCCGGAGAGATCCTTTCCA 61.338 60.000 5.05 0.00 34.83 3.53
1596 1711 2.134287 GTAGCCATGGCCGGAGAGA 61.134 63.158 33.14 7.11 43.17 3.10
1612 1733 2.666207 GTGGTGGCCATGTCCGTA 59.334 61.111 9.72 0.00 35.28 4.02
1615 1736 4.759205 GGGGTGGTGGCCATGTCC 62.759 72.222 9.72 11.65 35.28 4.02
1791 1912 2.102357 CACGACGAGGATGACGGG 59.898 66.667 0.00 0.00 34.93 5.28
1797 1921 2.473760 CGAGGAGCACGACGAGGAT 61.474 63.158 0.00 0.00 0.00 3.24
1900 2027 3.768922 GCTGCTCCTCCTCAGCGT 61.769 66.667 0.00 0.00 44.94 5.07
2113 2240 1.141881 ATGACAGCACCGACGGATC 59.858 57.895 23.38 11.42 0.00 3.36
2114 2241 1.153568 CATGACAGCACCGACGGAT 60.154 57.895 23.38 2.71 0.00 4.18
2115 2242 1.811645 TTCATGACAGCACCGACGGA 61.812 55.000 23.38 0.00 0.00 4.69
2117 2244 1.781555 GTTCATGACAGCACCGACG 59.218 57.895 0.00 0.00 0.00 5.12
2126 2253 2.749776 ACACATTCGACGTTCATGACA 58.250 42.857 0.00 0.00 0.00 3.58
2129 2256 4.639189 TTGTACACATTCGACGTTCATG 57.361 40.909 0.00 0.00 0.00 3.07
2187 2314 4.393680 GTGACACCAACACAAGTTTGAGTA 59.606 41.667 0.00 0.00 35.28 2.59
2188 2315 3.190535 GTGACACCAACACAAGTTTGAGT 59.809 43.478 0.00 0.00 35.28 3.41
2191 2318 2.160615 TCGTGACACCAACACAAGTTTG 59.839 45.455 0.00 0.00 38.04 2.93
2262 2394 3.377485 CGTACTGTACTCATGCCTGTACT 59.623 47.826 15.35 7.33 39.57 2.73
2263 2395 3.376234 TCGTACTGTACTCATGCCTGTAC 59.624 47.826 15.35 13.07 39.37 2.90
2264 2396 3.613030 TCGTACTGTACTCATGCCTGTA 58.387 45.455 15.35 0.00 0.00 2.74
2265 2397 2.423892 CTCGTACTGTACTCATGCCTGT 59.576 50.000 15.35 0.00 0.00 4.00
2266 2398 2.423892 ACTCGTACTGTACTCATGCCTG 59.576 50.000 15.35 0.00 0.00 4.85
2267 2399 2.724454 ACTCGTACTGTACTCATGCCT 58.276 47.619 15.35 0.00 0.00 4.75
2268 2400 3.875727 TCTACTCGTACTGTACTCATGCC 59.124 47.826 15.35 0.00 0.00 4.40
2269 2401 5.676532 ATCTACTCGTACTGTACTCATGC 57.323 43.478 15.35 0.00 0.00 4.06
2270 2402 7.485418 AGAATCTACTCGTACTGTACTCATG 57.515 40.000 15.35 5.82 0.00 3.07
2271 2403 8.508883 AAAGAATCTACTCGTACTGTACTCAT 57.491 34.615 15.35 3.71 0.00 2.90
2272 2404 7.823310 AGAAAGAATCTACTCGTACTGTACTCA 59.177 37.037 15.35 1.96 36.32 3.41
2273 2405 8.200364 AGAAAGAATCTACTCGTACTGTACTC 57.800 38.462 15.35 4.32 36.32 2.59
2274 2406 8.042515 AGAGAAAGAATCTACTCGTACTGTACT 58.957 37.037 15.35 0.39 38.96 2.73
2275 2407 8.117988 CAGAGAAAGAATCTACTCGTACTGTAC 58.882 40.741 7.90 7.90 38.96 2.90
2276 2408 8.039538 TCAGAGAAAGAATCTACTCGTACTGTA 58.960 37.037 10.18 0.00 38.96 2.74
2277 2409 6.879993 TCAGAGAAAGAATCTACTCGTACTGT 59.120 38.462 10.18 0.00 38.96 3.55
2278 2410 7.065324 AGTCAGAGAAAGAATCTACTCGTACTG 59.935 40.741 17.24 13.14 38.96 2.74
2310 2442 7.968405 GGTTACCATACTGCAAGACAAATTTAG 59.032 37.037 0.00 0.00 37.43 1.85
2312 2444 6.266558 TGGTTACCATACTGCAAGACAAATTT 59.733 34.615 0.00 0.00 37.43 1.82
2313 2445 5.772672 TGGTTACCATACTGCAAGACAAATT 59.227 36.000 0.00 0.00 37.43 1.82
2314 2446 5.183140 GTGGTTACCATACTGCAAGACAAAT 59.817 40.000 7.58 0.00 35.28 2.32
2319 2452 5.748670 TTAGTGGTTACCATACTGCAAGA 57.251 39.130 7.58 0.00 35.28 3.02
2397 2537 6.015918 TCTTCTCAGGTCTCATTCTCTCTTT 58.984 40.000 0.00 0.00 0.00 2.52
2399 2539 5.044919 TCTCTTCTCAGGTCTCATTCTCTCT 60.045 44.000 0.00 0.00 0.00 3.10
2400 2540 5.192927 TCTCTTCTCAGGTCTCATTCTCTC 58.807 45.833 0.00 0.00 0.00 3.20
2415 2555 3.857093 GCTCGACTTTGTGATCTCTTCTC 59.143 47.826 0.00 0.00 0.00 2.87
2434 2574 3.928992 TCTCTCGATGAAATTGTGTGCTC 59.071 43.478 0.00 0.00 0.00 4.26
2438 2578 8.146412 TGATATGATCTCTCGATGAAATTGTGT 58.854 33.333 0.00 0.00 0.00 3.72
2507 2651 6.984474 TCATTTTCACACTCGTAAGACTTCTT 59.016 34.615 0.00 0.00 45.01 2.52
2538 2682 1.607148 GCAAGCGGTGGGGAATAATAC 59.393 52.381 0.00 0.00 0.00 1.89
2566 2715 5.378332 TGGCCTTACAGTCTATAGTCTCTC 58.622 45.833 3.32 0.00 0.00 3.20
2572 2721 4.649674 TGGAGTTGGCCTTACAGTCTATAG 59.350 45.833 3.32 0.00 0.00 1.31
2593 2742 4.944372 GATAGGGTCGCGCGGTGG 62.944 72.222 31.69 0.71 0.00 4.61
2594 2743 4.944372 GGATAGGGTCGCGCGGTG 62.944 72.222 31.69 1.17 0.00 4.94
2596 2745 4.647615 CAGGATAGGGTCGCGCGG 62.648 72.222 31.69 11.75 0.00 6.46
2597 2746 3.825833 GACAGGATAGGGTCGCGCG 62.826 68.421 26.76 26.76 0.00 6.86
2598 2747 2.027751 GACAGGATAGGGTCGCGC 59.972 66.667 0.00 0.00 0.00 6.86
2599 2748 2.728817 GGACAGGATAGGGTCGCG 59.271 66.667 0.00 0.00 34.87 5.87
2600 2749 2.728817 CGGACAGGATAGGGTCGC 59.271 66.667 0.00 0.00 34.87 5.19
2601 2750 2.857744 GCCGGACAGGATAGGGTCG 61.858 68.421 5.05 0.00 45.00 4.79
2602 2751 1.049289 AAGCCGGACAGGATAGGGTC 61.049 60.000 5.05 0.00 45.00 4.46
2603 2752 1.003051 AAGCCGGACAGGATAGGGT 59.997 57.895 5.05 0.00 45.00 4.34
2604 2753 1.749033 GAAGCCGGACAGGATAGGG 59.251 63.158 5.05 0.00 45.00 3.53
2605 2754 1.364171 CGAAGCCGGACAGGATAGG 59.636 63.158 5.05 0.00 45.00 2.57
2606 2755 0.030908 GACGAAGCCGGACAGGATAG 59.969 60.000 5.05 0.00 45.00 2.08
2607 2756 1.389609 GGACGAAGCCGGACAGGATA 61.390 60.000 5.05 0.00 45.00 2.59
2608 2757 2.722201 GGACGAAGCCGGACAGGAT 61.722 63.158 5.05 0.00 45.00 3.24
2609 2758 3.379445 GGACGAAGCCGGACAGGA 61.379 66.667 5.05 0.00 45.00 3.86
2617 2766 2.453379 TACCCCAAACGGACGAAGCC 62.453 60.000 0.00 0.00 0.00 4.35
2618 2767 0.603439 TTACCCCAAACGGACGAAGC 60.603 55.000 0.00 0.00 0.00 3.86
2619 2768 1.881591 TTTACCCCAAACGGACGAAG 58.118 50.000 0.00 0.00 0.00 3.79
2620 2769 2.220313 CTTTTACCCCAAACGGACGAA 58.780 47.619 0.00 0.00 0.00 3.85
2621 2770 1.542987 CCTTTTACCCCAAACGGACGA 60.543 52.381 0.00 0.00 37.67 4.20
2622 2771 0.876399 CCTTTTACCCCAAACGGACG 59.124 55.000 0.00 0.00 37.67 4.79
2623 2772 2.275134 TCCTTTTACCCCAAACGGAC 57.725 50.000 0.00 0.00 39.09 4.79
2624 2773 2.091994 TGTTCCTTTTACCCCAAACGGA 60.092 45.455 0.00 0.00 41.48 4.69
2625 2774 2.308690 TGTTCCTTTTACCCCAAACGG 58.691 47.619 0.00 0.00 36.98 4.44
2626 2775 4.388378 TTTGTTCCTTTTACCCCAAACG 57.612 40.909 0.00 0.00 0.00 3.60
2627 2776 5.979993 TCTTTTGTTCCTTTTACCCCAAAC 58.020 37.500 0.00 0.00 0.00 2.93
2628 2777 5.958987 TCTCTTTTGTTCCTTTTACCCCAAA 59.041 36.000 0.00 0.00 0.00 3.28
2629 2778 5.520751 TCTCTTTTGTTCCTTTTACCCCAA 58.479 37.500 0.00 0.00 0.00 4.12
2630 2779 5.132043 TCTCTTTTGTTCCTTTTACCCCA 57.868 39.130 0.00 0.00 0.00 4.96
2631 2780 5.047306 CCATCTCTTTTGTTCCTTTTACCCC 60.047 44.000 0.00 0.00 0.00 4.95
2632 2781 5.538813 ACCATCTCTTTTGTTCCTTTTACCC 59.461 40.000 0.00 0.00 0.00 3.69
2633 2782 6.294564 GGACCATCTCTTTTGTTCCTTTTACC 60.295 42.308 0.00 0.00 0.00 2.85
2634 2783 6.264518 TGGACCATCTCTTTTGTTCCTTTTAC 59.735 38.462 0.00 0.00 0.00 2.01
2635 2784 6.369629 TGGACCATCTCTTTTGTTCCTTTTA 58.630 36.000 0.00 0.00 0.00 1.52
2636 2785 5.208121 TGGACCATCTCTTTTGTTCCTTTT 58.792 37.500 0.00 0.00 0.00 2.27
2637 2786 4.803452 TGGACCATCTCTTTTGTTCCTTT 58.197 39.130 0.00 0.00 0.00 3.11
2638 2787 4.401925 CTGGACCATCTCTTTTGTTCCTT 58.598 43.478 0.00 0.00 0.00 3.36
2639 2788 3.812167 GCTGGACCATCTCTTTTGTTCCT 60.812 47.826 0.00 0.00 0.00 3.36
2640 2789 2.489722 GCTGGACCATCTCTTTTGTTCC 59.510 50.000 0.00 0.00 0.00 3.62
2641 2790 2.160417 CGCTGGACCATCTCTTTTGTTC 59.840 50.000 0.00 0.00 0.00 3.18
2642 2791 2.154462 CGCTGGACCATCTCTTTTGTT 58.846 47.619 0.00 0.00 0.00 2.83
2643 2792 1.813513 CGCTGGACCATCTCTTTTGT 58.186 50.000 0.00 0.00 0.00 2.83
2644 2793 0.449388 GCGCTGGACCATCTCTTTTG 59.551 55.000 0.00 0.00 0.00 2.44
2645 2794 0.036732 TGCGCTGGACCATCTCTTTT 59.963 50.000 9.73 0.00 0.00 2.27
2646 2795 0.674895 GTGCGCTGGACCATCTCTTT 60.675 55.000 9.73 0.00 0.00 2.52
2647 2796 1.078848 GTGCGCTGGACCATCTCTT 60.079 57.895 9.73 0.00 0.00 2.85
2648 2797 2.581354 GTGCGCTGGACCATCTCT 59.419 61.111 9.73 0.00 0.00 3.10
2649 2798 2.887568 CGTGCGCTGGACCATCTC 60.888 66.667 9.73 0.00 0.00 2.75
2650 2799 4.457496 CCGTGCGCTGGACCATCT 62.457 66.667 9.73 0.00 0.00 2.90
2658 2807 4.389576 GTTTGAGGCCGTGCGCTG 62.390 66.667 9.73 0.08 37.74 5.18
2662 2811 3.723348 GTCCGTTTGAGGCCGTGC 61.723 66.667 0.00 0.00 0.00 5.34
2663 2812 1.234615 ATTGTCCGTTTGAGGCCGTG 61.235 55.000 0.00 0.00 0.00 4.94
2664 2813 0.536460 AATTGTCCGTTTGAGGCCGT 60.536 50.000 0.00 0.00 0.00 5.68
2665 2814 0.109781 CAATTGTCCGTTTGAGGCCG 60.110 55.000 0.00 0.00 0.00 6.13
2666 2815 0.958822 ACAATTGTCCGTTTGAGGCC 59.041 50.000 4.92 0.00 0.00 5.19
2667 2816 2.331809 GACAATTGTCCGTTTGAGGC 57.668 50.000 25.26 0.00 39.07 4.70
2688 2837 0.717784 GTCGAAAACGGACGGAATCC 59.282 55.000 0.00 0.00 45.20 3.01
2689 2838 0.717784 GGTCGAAAACGGACGGAATC 59.282 55.000 0.00 0.00 35.24 2.52
2690 2839 0.671472 GGGTCGAAAACGGACGGAAT 60.671 55.000 0.00 0.00 35.24 3.01
2691 2840 1.300853 GGGTCGAAAACGGACGGAA 60.301 57.895 0.00 0.00 35.24 4.30
2692 2841 1.818959 ATGGGTCGAAAACGGACGGA 61.819 55.000 0.00 0.00 35.24 4.69
2693 2842 1.356527 GATGGGTCGAAAACGGACGG 61.357 60.000 0.00 0.00 35.24 4.79
2694 2843 1.356527 GGATGGGTCGAAAACGGACG 61.357 60.000 0.00 0.00 35.24 4.79
2695 2844 1.022982 GGGATGGGTCGAAAACGGAC 61.023 60.000 0.00 0.00 0.00 4.79
2696 2845 1.297364 GGGATGGGTCGAAAACGGA 59.703 57.895 0.00 0.00 0.00 4.69
2697 2846 1.747745 GGGGATGGGTCGAAAACGG 60.748 63.158 0.00 0.00 0.00 4.44
2698 2847 2.104253 CGGGGATGGGTCGAAAACG 61.104 63.158 0.00 0.00 0.00 3.60
2699 2848 1.022982 GTCGGGGATGGGTCGAAAAC 61.023 60.000 0.00 0.00 34.62 2.43
2700 2849 1.297364 GTCGGGGATGGGTCGAAAA 59.703 57.895 0.00 0.00 34.62 2.29
2701 2850 2.983791 GTCGGGGATGGGTCGAAA 59.016 61.111 0.00 0.00 34.62 3.46
2702 2851 3.454573 CGTCGGGGATGGGTCGAA 61.455 66.667 0.00 0.00 34.62 3.71
2705 2854 4.530857 CTGCGTCGGGGATGGGTC 62.531 72.222 0.00 0.00 0.00 4.46
2708 2857 4.096003 AACCTGCGTCGGGGATGG 62.096 66.667 9.14 0.00 33.40 3.51
2709 2858 2.819595 CAACCTGCGTCGGGGATG 60.820 66.667 9.14 4.64 33.40 3.51
2710 2859 4.096003 CCAACCTGCGTCGGGGAT 62.096 66.667 9.14 0.00 33.40 3.85
3028 3177 3.064987 CTAGTGTCCCCGACAGGCG 62.065 68.421 0.00 0.00 43.57 5.52
3029 3178 2.893398 CTAGTGTCCCCGACAGGC 59.107 66.667 0.00 0.00 43.57 4.85
3030 3179 1.949847 CTGCTAGTGTCCCCGACAGG 61.950 65.000 0.00 0.00 43.57 4.00
3031 3180 1.251527 ACTGCTAGTGTCCCCGACAG 61.252 60.000 0.00 0.00 43.57 3.51
3032 3181 1.228769 ACTGCTAGTGTCCCCGACA 60.229 57.895 0.00 0.00 40.50 4.35
3033 3182 1.511768 GACTGCTAGTGTCCCCGAC 59.488 63.158 6.72 0.00 0.00 4.79
3034 3183 1.681327 GGACTGCTAGTGTCCCCGA 60.681 63.158 19.74 0.00 46.01 5.14
3035 3184 2.893398 GGACTGCTAGTGTCCCCG 59.107 66.667 19.74 0.00 46.01 5.73
3047 3196 3.003173 TTGGGAGCGGAGGGACTG 61.003 66.667 0.00 0.00 41.55 3.51
3049 3198 4.452733 CGTTGGGAGCGGAGGGAC 62.453 72.222 0.00 0.00 0.00 4.46
3051 3200 3.546714 AAACGTTGGGAGCGGAGGG 62.547 63.158 0.00 0.00 0.00 4.30
3052 3201 2.032071 AAACGTTGGGAGCGGAGG 59.968 61.111 0.00 0.00 0.00 4.30
3053 3202 1.301401 TGAAACGTTGGGAGCGGAG 60.301 57.895 0.00 0.00 0.00 4.63
3054 3203 1.595929 GTGAAACGTTGGGAGCGGA 60.596 57.895 0.00 0.00 0.00 5.54
3055 3204 2.613506 GGTGAAACGTTGGGAGCGG 61.614 63.158 0.00 0.00 38.12 5.52
3056 3205 2.613506 GGGTGAAACGTTGGGAGCG 61.614 63.158 0.00 0.00 38.12 5.03
3057 3206 1.228154 AGGGTGAAACGTTGGGAGC 60.228 57.895 0.00 0.00 38.12 4.70
3058 3207 0.396811 AGAGGGTGAAACGTTGGGAG 59.603 55.000 0.00 0.00 38.12 4.30
3059 3208 0.395312 GAGAGGGTGAAACGTTGGGA 59.605 55.000 0.00 0.00 38.12 4.37
3060 3209 0.396811 AGAGAGGGTGAAACGTTGGG 59.603 55.000 0.00 0.00 38.12 4.12
3061 3210 1.608283 GGAGAGAGGGTGAAACGTTGG 60.608 57.143 0.00 0.00 38.12 3.77
3062 3211 1.608283 GGGAGAGAGGGTGAAACGTTG 60.608 57.143 0.00 0.00 38.12 4.10
3063 3212 0.685660 GGGAGAGAGGGTGAAACGTT 59.314 55.000 0.00 0.00 38.12 3.99
3064 3213 1.192803 GGGGAGAGAGGGTGAAACGT 61.193 60.000 0.00 0.00 38.12 3.99
3065 3214 1.597461 GGGGAGAGAGGGTGAAACG 59.403 63.158 0.00 0.00 38.12 3.60
3066 3215 1.597461 CGGGGAGAGAGGGTGAAAC 59.403 63.158 0.00 0.00 0.00 2.78
3067 3216 2.291043 GCGGGGAGAGAGGGTGAAA 61.291 63.158 0.00 0.00 0.00 2.69
3068 3217 2.683933 GCGGGGAGAGAGGGTGAA 60.684 66.667 0.00 0.00 0.00 3.18
3069 3218 4.779733 GGCGGGGAGAGAGGGTGA 62.780 72.222 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.