>input_sequence_60475
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-----------------------------------------------------------------ATGGCGAGCAGGCGA
GGGGAGGAGGTCTATGGGGACGGGCTGGAGGAGGAGTACATCAACATGGACCTGAGCCCC---GCGGCGGGGAGGGAGTT
CGAGTTCCACTTCCACATGTCCGCGCCGCTGGACAGGTCGGGCCAGCCGCCGCTCGCGTCCCCGGCCGACGAGCTCTTCT
ACAAGGGCAAGCTGCTGCCGCTGCACATGCCGCCGCGCGTCCAGATGGTCGAGGAGCTCCTCCTCGACGGCG---TCCGG
GCCAGGGCCGGGCCGCGTCTCGGCGGCCTCGCCGTCAGCACCGCCCCCGCCACGCCGTGCGAGCGCTCCCGCGGCGTCTC
GCCGGCCAACTCGTGCTTTGTCAGCGGGGAGCTCAACGTGGAGGAGTTCTTCCGGGAGTACGCGGCCGGCATGGCTCTCG
C---CGACGACGACGACGCCGCGTCGGCGGCCGGCGGCGAGAAGAAGCCCTGGTCCAGGAGGCTCCGGTTCGTCAGGCAG
CTCAACCTCGGCCGCCAGCTCAAGGCCTCCAAGGCTTACCTCAAGACCATGTTCGCCGGGAAGCAAGCCGGAACCGGCGG
CGACGACAAGCACGGTTTGGGTGGAAAGGATCTCTCCGGC------CATGGCTACGGACATGGCCACCACCCCCGGGCGT
GGAGGAAGAACCCGTTCGGACACATCAGAAGCAACAGGTGCATCACCGAGCAGAGCGGCGGCGGCGGCCGCCGCGCCGGG
CACCGGAGGTCCTTCTCCAGCGTCGTCGTCCGGTACTCGGCGTCCAACAAGACGTCCCCCACGCCGGCGCCCCC---GTC
ATCCTCGTCGTGCTCCTCGACGTCCTCCTCGTCCAAGTCCTCCACCTCGTCGTCGGTCCGGTGCTCGAGCGACTCCGA--
-CGGTGGCGCGGGGGCGGGGGCGCCGACGCTGAGGAGGAGCAGCAGCGCGAGCTCGGAGGCGGAGAACCCCATCCAGGGG
CTCATCGCCTACTGCAAGAAGTCCCAGCAGCTGGCCTCGGTGCGGAAGAGCGCCAGCGACGCCGGGTTCCGGTTCCTGTC
GTCGTCGGCGGCGTCCAAGGTCGCCGCGGAGTCCGAGGGCCTCGACGAGCTCATCGAGATCTGCAGGGTGTGA-------
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>chr1B_1_TraesCS1B01G296700
ACGGCATAAATAAACAAATGCACGCACGTACGTACCACTACCCGCAAGCACACACGGCAGCTAGAAAATTGATCACTGTA
GTGTACTACTACTACTACTACTACATCGTGTGTCGTAGTCGATCCATGCATTGTTTTTGTATTGATCTGGGGGCGTGAGC
TAGCCGAGCTTCTCTCCTCGAATTCGAATTCGAAAGTTTTGGCCGGAGCGGCCAAGGATTTTGAGCGGATTTATAAGCTT
GATTCAGCCGCCCGAGGAGAGGAGCGAGCAGAACAGAGCAGCCCGGTCGGTCTCCGGGCCAGTGCAGATACTGCTAAATC
AGCCGCACTCCACTGGTC-------TGGTTGGAACTAGAGATGT-----ATGCATGCGCTCCTAATTGCCTCGCAATGAC
TGAC----CTCGCATTGTGATTTGCACCAGTACCCATGCCGTAATCATCATCATCAACACTCAGAATACAACAGTATGTA
GGGGCAGTATTTTTACC--GTCAAATCGAATGGCACGAGAC----------------GGCTAGATAGCCCGATAGCCATG
CATGTAAAGAAGAGAAGCGTGGAGGAGCGGAGAGAGGGGG------------CGAAAGCAAAAGAAAAGAGCGGTCCTAA
TCGAGTAATCAGTCACTAGTGGCGGTACTTGTCCGACCGCCAAAGCCGATTTTCCCTCGAGGGAAAAGAGCAAGGGAAAA
GAGCAATGCAATGCGTGGA-------GGGGGGCAGCACGACACGGATAAAGCCAGAGACCGAGCACG-------------
-------CAGACAGTGAGCAAACAAAGCACCAG----------------GGGACGTACGTGCAGGATGCAAACAAGACTC
GGATCATGCGGACGGACCAGCAATGCTAGTTTAGTTTGCTGGGTAGGTAGCCCCCACAACCAGGGCGGGCAAAGCTCGGG
TCCGTCTTCGGTATAAGAGCGCCCCCACCCATGGATGCCACTGCCATTTCTGC----CCGTCCCAGCCAGTGTCGAGA-G
CAGCGGAGCG-AGTGAGGCACAGCGACCACAGAGCTTACCA----------GGCGAGGGCTGACGATGGCGAGCAGGCGA
GGGGAGGAGGTCTATGGGGACGGGCTGGAGGAGGAGTACATCAACATGGACCTGAGCCCC---GCGGCGGGGAGGGAGTT
CGAGTTCCACTTCCACATGTCCGCGCCGCTGGACAGGTCGGGCCAGCCGCCGCTCGCGTCCCCGGCCGACGAGCTCTTCT
ACAAGGGCAAGCTGCTGCCGCTGCACATGCCGCCGCGCGTCCAGATGGTCGAGGAGCTCCTCCTCGACGGCG---TCCGG
GCCAGGGCCGGGCCGCGTCTCGGCGGCCTCGCCGTCAGCACCGCCCCCGCCACGCCGTGCGAGCGCTCCCGCGGCGTCTC
GCCGGCCAACTCGTGCTTTGTCAGCGGGGAGCTCAACGTGGAGGAGTTCTTCCGGGAGTACGCGGCCGGCATGGCTCTCG
C---CGACGACGACGACGCCGCGTCGGCGGCCGGCGGCGAGAAGAAGCCCTGGTCCAGGAGGCTCCGGTTCGTCAGGCAG
CTCAACCTCGGCCGCCAGCTCAAGGCCTCCAAGGCTTACCTCAAGACCATGTTCGCCGGGAAGCAAGCCGGAACCGGCGG
CGACGACAAGCACGGTTTGGGTGGAAAGGATCTCTCCGGC------CATGGCTACGGACATGGCCACCACCCCCGGGCGT
GGAGGAAGAACCCGTTCGGACACATCAGAAGCAACAGGTGCATCACCGAGCAGAGCGGCGGCGGCGGCCGCCGCGCCGGG
CACCGGAGGTCCTTCTCCAGCGTCGTCGTCCGGTACTCGGCGTCCAACAAGACGTCCCCCACGCCGGCGCCCCC---GTC
ATCCTCGTCGTGCTCCTCGACGTCCTCCTCGTCCAAGTCCTCCACCTCGTCGTCGGTCCGGTGCTCGAGCGACTCCGA--
-CGGTGGCGCGGGGGCGGGGGCGCCGACGCTGAGGAGGAGCAGCAGCGCGAGCTCGGAGGCGGAGAACCCCATCCAGGGG
CTCATCGCCTACTGCAAGAAGTCCCAGCAGCTGGCCTCGGTGCGGAAGAGCGCCAGCGACGCCGGGTTCCGGTTCCTGTC
GTCGTCGGCGGCGTCCAAGGTCGCCGCGGAGTCCGAGGGCCTCGACGAGCTCATCGAGATCTGCAGGGTGTGATCGACCG
ATCCGTCGGTGCTGTCATGAACGTCGAATGTGTACAATGGTGTATGAAATGATGCATTCTGGAAATTTTGTGGTACTCAA
ACTTGTGTTGGTGTCACGATGGTGTTGCTCAAATCAACTGACTCTGAATTACTA-----AACCACATCTGATTAGTACAG
GCATGAGTACAGTACGAGTAGATTCTTTCTCTGACTCTTAACTAAATTTG-TCTTGCAGTATGGTAA-------CCACTA
AACAACATCTAATTAGTGCAAGTGCAAGACAAGAAGCATATGCTGCAGCTTAAAAAAAAGAGAGAATGAGACCTGAGAAG
AGATCACAAAGTCGAGCACACAATTTCATCGAGAGATCATATCATAGTATATATTTGCAGTCGGCACGTATCAGTCGATC
CTT----CCCAAGAAGTCTTACGAGTGTGAAAATGACCTCCGTAT-----TATTCCCCACCGCTTGCATTTCTTGAGAGA
CTATAGACTGTAAGGCCAACTCCACCGCGCGACCCTATCCTGTCCGGCTTCGTCCGTTTGGGGTAAAAGGAACAAAAGAG
ATGGTCCAGCGCACGGCCTCAAACGGACAATTGTCCGGATTCCGTCCGTTTTCGACCCATCCCCGACGCAGGTTGGCTCG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCGCCTGTCGGGGACACTAGCAGTC
CCTCCGCTCCCAACGTTTCACCCTCTCTCCCCGCCCCGCCCCGCCGTCGGTGCCG
>chr1D_6
-----ATAAATAAACTAATGCACGCACGTACT----ACTACCCGCAAGCACCCACGGCAGCTAGAAAATCGATCGCTCAC
TGTAGTAGTAGTATCGTGTGC------------------CGATCCATGCATTGTTTTTGTATTGATCTGGGGGCGTGAGC
T----GAGCTTCTCTCCTCGAATTCGAATTCGAAAGTTTTGGCCGGAGCGGCCAAGGATTTTGAGCGGATTTATAGGTTT
GATTCAGTCGCCC-----GAGGAGCGAGCAGAACAGAGCAGCCCGGTCGGTATCCGGGCCAGCGCAGATACTGCTAAATC
AGCCGTACCACTGTCCATAATCCAGTGGTTGGAACTAGAGATCGCTCAGATGCGTGCGCTCCTAATTGCCTCGCAATGAC
TGACTGACCTCGCCTTGTAATTTGCACCGGTACCCATGCCATGCCGTAAC-CATCATCACTCTGAATACA-------GTA
GGAGCAGTATTTTTACACTGTCAAATCGAATGGTGTACGAGACGGCTAGATGGAGTAGGATAGATAGCCTGATAGCCATG
CATGTAAAGAAGAAAAGCGTGGAGGAGCGGAGAGAGGGGGGCGGAGGGAAGGCGAAAGCAAAAGAAAAGAGGAGCCCTAA
TCGAGTAATCAGTCACTGGTGGCGGTACTTGTCCGACCGCCAAAGCCGATTTTCCCTCGAGGGAAAAGAGCAACGCAAC-
------------GCGTGGA-------GGGGGGCAGCACGACACGGATAAAGCCAGAGACCGAGCAGTGCGTGCTCGGC--
--CGAGACAGACAGTGAGCAAACAAAGCACCAGAGCATCGCTGCTTGCCGGGACGTACGCACAGGATGCAAACAAGACTC
AGATCATGCGGA-----CAGCAATGGTAGTTTAGTTTGCTGGGCA---CCCACCTCCCCCG-----GGACAAAGCTCGGG
T-----------ATAAGAGCGCCCCCGCCCATGGTTGCCACTGCCATTTCTGCCCATCCGTCCCAGCGAGCGCCGAGAAG
CAGCGGAGTGAAGTGAGGCGAGGTCACCAGACCACCACCAAGCTTATACAGGGCGAGGGTTGACGATGGCGAGCAGGCGA
GGGGAGGAGGCCCACGGGGACGGGCTGGAGGAGGAGTACATCGACATGGACCTGAGCC---CGGCGGTGGGGAGGGAGTT
CGAGTTCCACTTCCACATGTCGGCGCCGCTGGACAGGTCGGGGCAGCCGCCGCTGGCGTCGCCGGCCGACGAGCTCTTCT
ACAAGGGCAAGCTGCTGCCGCTGCACATGCCGCCGCGCGTCCAGATGGTCGAGGAGCTCCTCCTCGACGGCGCCGTCCGG
GGCCGGGCCGGGCCGCGGCTCGGCGGCCTCGCCGTGAGCACCGCCCCCGCCACGCCCTGCGAGCGCTCCCGCGGCGTGTC
GCCGGCCAACTCGTGCTTCGTGAGCGGGGAGCTCAACGTGGAGGAGTTCTTCCGGGAGTACGCGGCCGGCATGGCTCTCG
C---CGACGACGACGACGCCGCGTCGGCGGCCGGCGGCGAGAGGAAGCCCTGGTCCAGGAGGCTCCGGTTCGTCAGGCAG
CTCAACCTCGGCCGCCAGCTCAAGGCCTCCAAGGCTTACCTCAAGACCATGTTCGCCGGGAAGCAGGCGGGAGCCGGCGG
CGACGACAAGAACGGTCTGGGCGGAAAGGACCTCTCCGGTCACGGACATGGCCATAGCCATGGCCACCACCCCCGGGTGT
GGAGGAAGAACCCGTTCGGCCACATCAGAAGCAACAGGTGCATCACCGAGCAGAGCGGCGGCGGCGGCGGCCGCGCCGGG
CACCGGAGGTCCTTCTCCAGCGTCGTCGTCCGGTACTCCGCGTCGAGCAAGACGTCCCCCGCGCCGGCGCCTCC---GTC
GTCGTCGTCGTGCTCATCGACGTCCTCCTCGTCCAAGTCCTCCACCTCGTCGTCGGTCCGGTGCTCGAGCGACTCCGA--
-CGG---CGCGGGGACGGGGGCGCCGGCGCTGAGGAGGAGCAGCAGCGCGAGCTCGGAGGCGGAGAACCCCATCCAGGGG
CTCATCGCCTACTGCAAGAAGTCCCAGCAGCTGGCCTCGGTGCGGAAGAGCGCCAGCGACGCCGGGTTCCGGTTCCTGTC
GTCGTCGGCGGCGTCCAAGGTCGCCGCGGAGTCCGAGGGCCACGACGAGCTCATCGAGATCTGCAGCGGATGATCGTCGC
CACTGTCGGTGCCGTGATGAACGTTGAATGTGTACAATGGTGTATGAAATGATGCATTCTGGAAATTTTGTGGCGTTGAG
ACTTGTGCTGGTGTCACGATGGTGTTGCTCAAATCAACTGACCCTGAAT-----CACTAAACCACATCTGATT-------
----------AGTACGAGTAGATTCTTTTTCTGACTCTTAATT---TTTCTCCTTGCAGTATGGTAATTGTTAACCACGA
AACAACATCTGTTTAGTGCAAGTGCAAGACAAGAAGCATATGCTGCAGCTTAAAAATA--AGAGAATGAGACCTAAGAAG
AGATCACAAAGTCAAGCGCATAATTTCATCGAGAGATCATATCA---TATATATTTGCAGTCGGCACGTATCAGTCGATC
TTAGCGCCCCCAGAAGTCTTACGAGTGTGAAAATGACCTCCATATATTATTATTCCCCACTGCTTGCATTTCTTCGGAGA
TTATAGACTGTAA-------------------------------------------------------------------
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>chr1A_507
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------------------------------------------------------------TAGATAGCCCGATAGCCATG
CATGTAAAGAAGAGAAGCGTGGAGGAGCGGAGAGAGGGGCGGGC--GGAAGGCGAAAGCAAAAGAAAAGAGGAGCCCTAA
TCGAGTAATCAGTCGCTAGTGGCGGTACTTGTCCGACCGCCAAAGCCGATTTTCCCTCGAGGGAAAAGAGCAACGCAAC-
------------GCATGGACGTGGAGGGGGGGCAGCACGACACGAATAAAGCCAGAGTCCGAGCAGTGCGTGCTCGCTAG
AGCGAGACAGACAGTGAGCAAACAAAGCACCAG---------------CGGGACGTACGCGCAGGATGCAAACAAGACTC
AGATCATGCGGA-----CAGCAATGGTAGTTTAGCTTGCTGGGTAGCCCCCACCTCCCCCG-----GGACAAAGCTCGGG
T-----------ATAAGAGCGCCCCCGCCCATGGTTGCCACTGCCATTTCTGCCCGTCCGTCCCAGCGAGCGTCGAGAAG
CAGCGCAGCGAAGCGAGGCAAAGACACCAGTGAGGTTACTACA-------------------ACGATGGCGAGCAGGCGA
GGGGAGGAGGTCTACGGGGATGGGATGGAGGAGGAGTACATCGACATGGACCTGAGCCCCCCGGCGGCGGGGAGGGAGTT
CGAGTTCCACTTCCACATGTCCGCGCCGCTGGACAGGTCGGGGCAGCCGCCGCTGGCGTCCCCGGCCGACGAGCTCTTCT
ACAAGGGCAAGCTGCTCCCGCTGCACATGCCGCCGCGTGTCCAGATGGTCGAGGAGCTCCTCCTCGACGGCGCCGTCCGG
GGCAGGGCCGGCCCGCGGCTCGGCGGCCTCGCCGTCAGCACCGCCCCCGCCACGCCCTGCGAGCGCTCCCGCGGCGTGTC
GCCGGCCAACTCGTGCTTCGTCAGCGGGGAGCTCAACGTGGAGGAGTTCTTCCGGGAGTACGCGGCCGGCATGGCTCTCG
CCGACGACGACGACGACGCCGCATCGGCGGCCGGCGGCGAGAAGAAGCCCTGGTCCCGGAGGCTCCGGTTCGTCCGGCAG
CTCAACCTCGGCCGCCAGCTCAAGGCCTCCAAGGCCTACCTCAAGACCATGTTCGCCGGGAAGCAAGCGGGAGCCGGCGG
CGACGACAAGCACGGGTTGGGCGGAAAGGACCTCTCCG------------------GCCATGGCCACCACCCCCGGGCGT
GGAGGAAGAACCCGTTCGGACACATGAGAAGCAACAGGTGCATCACCGAGCAGAGCAGCGGCGGCGGCGGCCGCGCCGGG
CACCGGAGGTCCTTCTCCAGCGTCGTCGTCCGGTACTCGGCGTCCAACAAGACGTCCCCCGCGCCGGCGCCTCCAGCGTC
GTCCTCGTCCTGCTCCTCGACATCCTCCTCGTCCAAGTCCTCCACCTCGTCGTCGGTCCGGTGCTCGAGCGACTCCGACG
GCGG---CGCGGGGGCGGGGGCGCCGGCGCTGAGGAGGAGCAGCAGCGCGAGCTCGGAGGCCGAGAACCCCATCCAGGGG
CTCATCGCCTACTGCAAGAAGTCCCAGCAGCTGGCGTCGGTGCGGAAGAGCGCCAGCGACGCCGGGTTCCGGTTCCTGTC
GTCGTCGGCGGCCTCCAAGGTCGCCGCCGAGTCCGAGGGCCTGGACGAGCTCATCGAGATCTGCAGCGGATGATCGTCGC
CCCTGTCGGTGCCGTGATGAACGTCGAATGTGTACAATGGTGTCTGAAATGATGCATTCCGGAAATTTTGTGGCGCTGAA
ACTTGTGTTGGTGTCACGATGCTGTTGCTCAAATCAACTGACTCTGAATTACTACACTAAACCACATCTGATT-------
----------AGTACGGGTAGATTCTTTTTCTGACTCTTAAAT---TTTG-CCTTGCAGTATGGTAA-------CCAGTA
GACAGTATTTGGTTAGTGCAAGTGCAAGACAAGAAGCATATGCTGCAGCTTAAAAATA--AGAGAATGAGACCTAAGAGG
AGATCACAAAGTCAAGCGCATAATTTCAT---------------------ATATTTGCAGTCGGCACGTAGCAGTCGTTC
CTT----CCCCGGAAGTCTTACGAGTGTGAAAATGACCTCCATAT-----CATTCCCCACCGCCTGCATTTCTTCAGAGA
TTACGGACTGTAA-------------------------------------------------------------------
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>SNPs
SSSSS----------S---------------SSSSS---------------S-----------------S----S--SSS
SSSSSSSSSSSSSS-SSS-S-SSSSSSSSSSSSSSSSSS-----------------------------------------
-SSSS----------------------------------------------------------------------S-S--
-------S-----SSSSS---------------------------------S----------S-----------------
-----S--SS-SS-SSSS------------------------SS---------S--------------------------
-------------S----S---------S-----------S-SSSSSSSSS-----S-----S-------SSSSSSS---
--S-------------S----------------SSSSS--S------------------S--------------------
-----------------------------------------------------------------------SS-S-----
-------------------------------------------------------------------------S-S--SS
SSSSSSSSSSSS-----------------------------------------------------SS-------------
-----------------------------------------------------------S--------------------
S-----------SSSSS--------S--------------------SSSS-S--SS-SS-SSSSSS--S-----------
-SSSSSSSSSSS--------------S-------S--------------------------------S--S---------
--------------------S--SS----S---------S-------------------S--------------------
--------------S---------------------------S-------------------------------------
------------------------------------------S-----------S-------------------------
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-S---------------S--------------------------------------S--------------------S--
------------------S-------------------------------------------------------------
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--------------------------------------------------------------------S---S-------
---------------------S--------S--------S------------S-SS-S----------------------
--------------------------------------------------------------------S-----------
------------------------------------------------------------S----------S--------
S-------------------------------------------------------------------------------
----SSS-------------------S-----------------------------------------------------
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------------------------------------------------------------------S-SS------S-SS
SS-S--------S--S---------------------------------------------------------SS--S--
-------------------------------------------------------------------------SSSSSSS
SSSSSSSSSS------------------S------------S-SSS-----S----------------------------
----------SS--------------------------------------------S-SS--------------S-----
-------------S---S--S-----------------------SSS---------------------------------
----------S------------------------------S--------------------------------S-----
S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_893
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-------------------------------------------------------------------------AAGACTC
GGATCATGCGGAC-------------------------------------------------------------------
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>reverse_2755
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----------------------------------CTATCCTGTCCGGCTTCGTC--------------------------
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