Multiple sequence alignment - TraesCS1B01G296100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G296100 chr1B 100.000 3083 0 0 1 3083 514606584 514603502 0.000000e+00 5694.0
1 TraesCS1B01G296100 chr1B 83.912 1094 148 23 958 2038 514738141 514737063 0.000000e+00 1020.0
2 TraesCS1B01G296100 chr1B 90.566 53 2 1 2763 2812 675893267 675893215 1.980000e-07 67.6
3 TraesCS1B01G296100 chr1D 93.902 1558 60 11 628 2180 383723667 383722140 0.000000e+00 2318.0
4 TraesCS1B01G296100 chr1D 95.487 554 12 6 2175 2720 383722101 383721553 0.000000e+00 872.0
5 TraesCS1B01G296100 chr1D 83.798 932 124 18 967 1874 383755977 383755049 0.000000e+00 859.0
6 TraesCS1B01G296100 chr1D 96.296 135 5 0 2896 3030 383721551 383721417 4.000000e-54 222.0
7 TraesCS1B01G296100 chr1D 87.162 148 13 5 395 537 256106963 256107109 2.460000e-36 163.0
8 TraesCS1B01G296100 chr1D 93.151 73 4 1 431 502 384834182 384834110 4.200000e-19 106.0
9 TraesCS1B01G296100 chr1A 94.037 1459 52 8 726 2180 483649132 483647705 0.000000e+00 2180.0
10 TraesCS1B01G296100 chr1A 83.833 1101 150 19 958 2038 483659929 483658837 0.000000e+00 1022.0
11 TraesCS1B01G296100 chr1A 94.578 498 13 5 2251 2744 483646963 483646476 0.000000e+00 758.0
12 TraesCS1B01G296100 chr1A 93.033 244 15 1 2 245 483649375 483649134 3.780000e-94 355.0
13 TraesCS1B01G296100 chr1A 98.551 69 1 0 2174 2242 483647671 483647603 4.170000e-24 122.0
14 TraesCS1B01G296100 chr5A 80.059 341 63 5 1001 1340 473982508 473982844 6.600000e-62 248.0
15 TraesCS1B01G296100 chr5A 78.448 348 68 4 1001 1346 474144724 474144382 1.440000e-53 220.0
16 TraesCS1B01G296100 chr5A 78.655 342 66 4 1001 1340 474256376 474256712 1.440000e-53 220.0
17 TraesCS1B01G296100 chr5B 78.100 379 67 9 1057 1432 441407319 441407684 3.090000e-55 226.0
18 TraesCS1B01G296100 chr5B 84.868 152 17 5 393 538 699419485 699419636 6.890000e-32 148.0
19 TraesCS1B01G296100 chr5B 87.395 119 11 3 1812 1928 441408108 441408224 1.930000e-27 134.0
20 TraesCS1B01G296100 chr2B 78.929 280 44 7 1726 2005 228911785 228911521 3.160000e-40 176.0
21 TraesCS1B01G296100 chr6B 83.333 138 18 4 395 527 655880019 655880156 4.170000e-24 122.0
22 TraesCS1B01G296100 chr6B 87.143 70 4 2 395 459 114134779 114134848 1.190000e-09 75.0
23 TraesCS1B01G296100 chr3D 86.364 110 15 0 429 538 84540322 84540213 1.500000e-23 121.0
24 TraesCS1B01G296100 chr3D 86.364 110 15 0 429 538 84556431 84556540 1.500000e-23 121.0
25 TraesCS1B01G296100 chr3B 86.364 110 15 0 429 538 131999412 131999303 1.500000e-23 121.0
26 TraesCS1B01G296100 chr5D 74.016 254 39 18 1394 1632 371011115 371011356 9.170000e-11 78.7
27 TraesCS1B01G296100 chr5D 89.655 58 2 3 2766 2819 310189357 310189300 1.530000e-08 71.3
28 TraesCS1B01G296100 chr4A 96.875 32 1 0 2765 2796 608989722 608989691 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G296100 chr1B 514603502 514606584 3082 True 5694.000000 5694 100.000000 1 3083 1 chr1B.!!$R1 3082
1 TraesCS1B01G296100 chr1B 514737063 514738141 1078 True 1020.000000 1020 83.912000 958 2038 1 chr1B.!!$R2 1080
2 TraesCS1B01G296100 chr1D 383721417 383723667 2250 True 1137.333333 2318 95.228333 628 3030 3 chr1D.!!$R3 2402
3 TraesCS1B01G296100 chr1D 383755049 383755977 928 True 859.000000 859 83.798000 967 1874 1 chr1D.!!$R1 907
4 TraesCS1B01G296100 chr1A 483658837 483659929 1092 True 1022.000000 1022 83.833000 958 2038 1 chr1A.!!$R1 1080
5 TraesCS1B01G296100 chr1A 483646476 483649375 2899 True 853.750000 2180 95.049750 2 2744 4 chr1A.!!$R2 2742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 580 0.179148 GCGGGCGGACCTAAAATTTG 60.179 55.0 0.0 0.0 36.97 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2129 0.179275 CGATCAACTCGCACACGTTG 60.179 55.0 0.0 0.0 41.14 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.523258 CGGGCCTCAGCTCATTGAG 60.523 63.158 9.40 9.40 40.75 3.02
25 26 2.105477 GGGCCTCAGCTCATTGAGATAA 59.895 50.000 17.87 0.00 45.95 1.75
44 45 2.847327 ATGAGTCACCCAACACAGAG 57.153 50.000 0.00 0.00 0.00 3.35
48 49 1.134098 AGTCACCCAACACAGAGGTTG 60.134 52.381 0.00 0.00 45.97 3.77
85 86 3.129638 GCCCAAAACAAGTCACTACACAA 59.870 43.478 0.00 0.00 0.00 3.33
90 91 4.481368 AACAAGTCACTACACAACAGGA 57.519 40.909 0.00 0.00 0.00 3.86
91 92 4.481368 ACAAGTCACTACACAACAGGAA 57.519 40.909 0.00 0.00 0.00 3.36
183 184 5.654603 TGAATCTTGAAGCAGCAATCAAT 57.345 34.783 12.53 0.99 35.20 2.57
228 229 5.957842 TTTTCCAGCAACTTACATAGTGG 57.042 39.130 0.00 0.00 37.12 4.00
261 262 3.676093 CAAACTCTTTGGGGAGTACTCC 58.324 50.000 30.72 30.72 44.67 3.85
274 275 5.997384 GGAGTACTCCCTCAGTCTTTAAA 57.003 43.478 28.87 0.00 43.94 1.52
275 276 6.356186 GGAGTACTCCCTCAGTCTTTAAAA 57.644 41.667 28.87 0.00 43.94 1.52
276 277 6.399743 GGAGTACTCCCTCAGTCTTTAAAAG 58.600 44.000 28.87 0.00 43.94 2.27
277 278 6.210984 GGAGTACTCCCTCAGTCTTTAAAAGA 59.789 42.308 28.87 0.00 43.94 2.52
278 279 7.234661 AGTACTCCCTCAGTCTTTAAAAGAG 57.765 40.000 0.00 0.00 38.41 2.85
279 280 6.783482 AGTACTCCCTCAGTCTTTAAAAGAGT 59.217 38.462 0.00 0.00 41.81 3.24
290 291 8.421673 AGTCTTTAAAAGAGTGTACTGTCAAC 57.578 34.615 0.00 0.00 39.66 3.18
291 292 8.258708 AGTCTTTAAAAGAGTGTACTGTCAACT 58.741 33.333 0.00 0.00 39.66 3.16
292 293 8.880750 GTCTTTAAAAGAGTGTACTGTCAACTT 58.119 33.333 0.00 0.00 38.41 2.66
293 294 9.444600 TCTTTAAAAGAGTGTACTGTCAACTTT 57.555 29.630 0.00 0.00 32.71 2.66
294 295 9.490663 CTTTAAAAGAGTGTACTGTCAACTTTG 57.509 33.333 0.00 0.00 31.90 2.77
295 296 8.556213 TTAAAAGAGTGTACTGTCAACTTTGT 57.444 30.769 0.00 0.00 31.90 2.83
296 297 9.656040 TTAAAAGAGTGTACTGTCAACTTTGTA 57.344 29.630 0.00 0.00 31.90 2.41
297 298 8.556213 AAAAGAGTGTACTGTCAACTTTGTAA 57.444 30.769 0.00 0.00 31.90 2.41
298 299 8.556213 AAAGAGTGTACTGTCAACTTTGTAAA 57.444 30.769 0.00 0.00 31.10 2.01
299 300 8.556213 AAGAGTGTACTGTCAACTTTGTAAAA 57.444 30.769 0.00 0.00 0.00 1.52
300 301 8.197988 AGAGTGTACTGTCAACTTTGTAAAAG 57.802 34.615 0.00 0.00 0.00 2.27
301 302 7.280205 AGAGTGTACTGTCAACTTTGTAAAAGG 59.720 37.037 4.86 0.00 0.00 3.11
302 303 6.882678 AGTGTACTGTCAACTTTGTAAAAGGT 59.117 34.615 4.86 0.00 0.00 3.50
303 304 7.065443 AGTGTACTGTCAACTTTGTAAAAGGTC 59.935 37.037 4.86 0.00 0.00 3.85
304 305 5.479716 ACTGTCAACTTTGTAAAAGGTCG 57.520 39.130 4.86 0.00 0.00 4.79
305 306 5.180271 ACTGTCAACTTTGTAAAAGGTCGA 58.820 37.500 4.86 0.00 0.00 4.20
306 307 5.644636 ACTGTCAACTTTGTAAAAGGTCGAA 59.355 36.000 4.86 0.00 0.00 3.71
307 308 5.871539 TGTCAACTTTGTAAAAGGTCGAAC 58.128 37.500 0.00 0.00 0.00 3.95
308 309 5.644636 TGTCAACTTTGTAAAAGGTCGAACT 59.355 36.000 0.00 0.00 0.00 3.01
309 310 6.149807 TGTCAACTTTGTAAAAGGTCGAACTT 59.850 34.615 10.68 10.68 0.00 2.66
310 311 7.025365 GTCAACTTTGTAAAAGGTCGAACTTT 58.975 34.615 22.63 22.63 42.17 2.66
312 313 8.083462 TCAACTTTGTAAAAGGTCGAACTTTTT 58.917 29.630 37.90 24.50 45.61 1.94
358 359 7.636150 AATAATAGCCAACATCTATGCCATC 57.364 36.000 0.00 0.00 0.00 3.51
359 360 4.645863 ATAGCCAACATCTATGCCATCA 57.354 40.909 0.00 0.00 0.00 3.07
360 361 3.301794 AGCCAACATCTATGCCATCAA 57.698 42.857 0.00 0.00 0.00 2.57
361 362 3.634504 AGCCAACATCTATGCCATCAAA 58.365 40.909 0.00 0.00 0.00 2.69
362 363 4.220724 AGCCAACATCTATGCCATCAAAT 58.779 39.130 0.00 0.00 0.00 2.32
363 364 5.387788 AGCCAACATCTATGCCATCAAATA 58.612 37.500 0.00 0.00 0.00 1.40
364 365 5.475909 AGCCAACATCTATGCCATCAAATAG 59.524 40.000 0.00 0.00 0.00 1.73
365 366 5.242393 GCCAACATCTATGCCATCAAATAGT 59.758 40.000 0.00 0.00 0.00 2.12
366 367 6.430925 GCCAACATCTATGCCATCAAATAGTA 59.569 38.462 0.00 0.00 0.00 1.82
367 368 7.361542 GCCAACATCTATGCCATCAAATAGTAG 60.362 40.741 0.00 0.00 0.00 2.57
368 369 7.361542 CCAACATCTATGCCATCAAATAGTAGC 60.362 40.741 0.00 0.00 0.00 3.58
369 370 6.772605 ACATCTATGCCATCAAATAGTAGCA 58.227 36.000 0.00 0.00 34.28 3.49
370 371 7.400439 ACATCTATGCCATCAAATAGTAGCAT 58.600 34.615 0.00 0.00 43.04 3.79
371 372 7.886970 ACATCTATGCCATCAAATAGTAGCATT 59.113 33.333 0.13 0.00 41.03 3.56
372 373 7.912056 TCTATGCCATCAAATAGTAGCATTC 57.088 36.000 0.13 0.00 41.03 2.67
373 374 7.683578 TCTATGCCATCAAATAGTAGCATTCT 58.316 34.615 0.13 0.00 41.03 2.40
374 375 6.814506 ATGCCATCAAATAGTAGCATTCTC 57.185 37.500 0.00 0.00 37.68 2.87
375 376 5.933617 TGCCATCAAATAGTAGCATTCTCT 58.066 37.500 0.00 0.00 0.00 3.10
376 377 5.761726 TGCCATCAAATAGTAGCATTCTCTG 59.238 40.000 0.00 0.00 0.00 3.35
472 473 9.866798 TTATAAGCATTGACATATTTTTGCACA 57.133 25.926 0.00 0.00 32.66 4.57
473 474 8.774890 ATAAGCATTGACATATTTTTGCACAA 57.225 26.923 0.00 0.00 32.66 3.33
474 475 7.493743 AAGCATTGACATATTTTTGCACAAA 57.506 28.000 0.00 0.00 32.66 2.83
475 476 6.890558 AGCATTGACATATTTTTGCACAAAC 58.109 32.000 0.00 0.00 32.66 2.93
476 477 6.707161 AGCATTGACATATTTTTGCACAAACT 59.293 30.769 0.00 0.00 32.66 2.66
477 478 7.227116 AGCATTGACATATTTTTGCACAAACTT 59.773 29.630 0.00 0.00 32.66 2.66
478 479 7.321746 GCATTGACATATTTTTGCACAAACTTG 59.678 33.333 0.00 4.27 0.00 3.16
479 480 8.549548 CATTGACATATTTTTGCACAAACTTGA 58.450 29.630 13.40 0.00 0.00 3.02
480 481 8.659925 TTGACATATTTTTGCACAAACTTGAT 57.340 26.923 13.40 0.00 0.00 2.57
481 482 8.296799 TGACATATTTTTGCACAAACTTGATC 57.703 30.769 13.40 9.06 0.00 2.92
482 483 7.924947 TGACATATTTTTGCACAAACTTGATCA 59.075 29.630 13.40 0.00 0.00 2.92
483 484 8.659925 ACATATTTTTGCACAAACTTGATCAA 57.340 26.923 8.12 8.12 0.00 2.57
484 485 9.107177 ACATATTTTTGCACAAACTTGATCAAA 57.893 25.926 9.88 3.72 34.22 2.69
485 486 9.372541 CATATTTTTGCACAAACTTGATCAAAC 57.627 29.630 9.88 0.00 35.01 2.93
486 487 5.793026 TTTTGCACAAACTTGATCAAACC 57.207 34.783 9.88 0.00 35.01 3.27
487 488 4.734398 TTGCACAAACTTGATCAAACCT 57.266 36.364 9.88 0.00 0.00 3.50
488 489 4.734398 TGCACAAACTTGATCAAACCTT 57.266 36.364 9.88 0.34 0.00 3.50
489 490 5.843673 TGCACAAACTTGATCAAACCTTA 57.156 34.783 9.88 0.00 0.00 2.69
490 491 6.214191 TGCACAAACTTGATCAAACCTTAA 57.786 33.333 9.88 0.00 0.00 1.85
491 492 6.272318 TGCACAAACTTGATCAAACCTTAAG 58.728 36.000 9.88 0.00 0.00 1.85
492 493 6.096141 TGCACAAACTTGATCAAACCTTAAGA 59.904 34.615 9.88 0.00 0.00 2.10
493 494 7.147976 GCACAAACTTGATCAAACCTTAAGAT 58.852 34.615 9.88 0.00 0.00 2.40
494 495 8.296713 GCACAAACTTGATCAAACCTTAAGATA 58.703 33.333 9.88 0.00 0.00 1.98
495 496 9.831737 CACAAACTTGATCAAACCTTAAGATAG 57.168 33.333 9.88 0.00 0.00 2.08
496 497 9.574516 ACAAACTTGATCAAACCTTAAGATAGT 57.425 29.630 9.88 0.00 0.00 2.12
509 510 9.708092 AACCTTAAGATAGTTTGACTGTCTAAC 57.292 33.333 21.96 21.96 44.38 2.34
510 511 8.867097 ACCTTAAGATAGTTTGACTGTCTAACA 58.133 33.333 27.90 17.97 44.38 2.41
511 512 9.706691 CCTTAAGATAGTTTGACTGTCTAACAA 57.293 33.333 27.90 15.87 44.38 2.83
515 516 9.614792 AAGATAGTTTGACTGTCTAACAAAGTT 57.385 29.630 27.90 16.84 44.38 2.66
516 517 9.046296 AGATAGTTTGACTGTCTAACAAAGTTG 57.954 33.333 27.90 0.00 43.52 3.16
517 518 6.436843 AGTTTGACTGTCTAACAAAGTTGG 57.563 37.500 27.90 0.00 35.17 3.77
518 519 6.177610 AGTTTGACTGTCTAACAAAGTTGGA 58.822 36.000 27.90 0.00 35.17 3.53
519 520 6.657541 AGTTTGACTGTCTAACAAAGTTGGAA 59.342 34.615 27.90 1.96 35.17 3.53
520 521 7.175990 AGTTTGACTGTCTAACAAAGTTGGAAA 59.824 33.333 27.90 7.26 35.17 3.13
521 522 7.639113 TTGACTGTCTAACAAAGTTGGAAAT 57.361 32.000 9.51 0.00 0.00 2.17
522 523 8.740123 TTGACTGTCTAACAAAGTTGGAAATA 57.260 30.769 9.51 0.00 0.00 1.40
523 524 8.149973 TGACTGTCTAACAAAGTTGGAAATAC 57.850 34.615 9.51 0.00 0.00 1.89
524 525 7.771361 TGACTGTCTAACAAAGTTGGAAATACA 59.229 33.333 9.51 0.00 0.00 2.29
525 526 7.927048 ACTGTCTAACAAAGTTGGAAATACAC 58.073 34.615 0.00 0.00 0.00 2.90
526 527 7.773690 ACTGTCTAACAAAGTTGGAAATACACT 59.226 33.333 0.00 0.00 0.00 3.55
527 528 9.268268 CTGTCTAACAAAGTTGGAAATACACTA 57.732 33.333 0.00 0.00 0.00 2.74
528 529 9.787435 TGTCTAACAAAGTTGGAAATACACTAT 57.213 29.630 0.00 0.00 0.00 2.12
539 540 9.550811 GTTGGAAATACACTATTTTAAAGACCG 57.449 33.333 0.00 0.00 38.42 4.79
540 541 8.851541 TGGAAATACACTATTTTAAAGACCGT 57.148 30.769 0.00 0.00 38.42 4.83
541 542 8.723311 TGGAAATACACTATTTTAAAGACCGTG 58.277 33.333 7.17 7.17 38.42 4.94
542 543 7.695201 GGAAATACACTATTTTAAAGACCGTGC 59.305 37.037 8.14 0.00 38.42 5.34
543 544 4.657075 ACACTATTTTAAAGACCGTGCG 57.343 40.909 8.14 0.00 0.00 5.34
544 545 4.060205 ACACTATTTTAAAGACCGTGCGT 58.940 39.130 8.14 0.00 0.00 5.24
545 546 4.084223 ACACTATTTTAAAGACCGTGCGTG 60.084 41.667 8.14 0.00 0.00 5.34
546 547 4.060205 ACTATTTTAAAGACCGTGCGTGT 58.940 39.130 0.00 0.00 0.00 4.49
547 548 5.118971 CACTATTTTAAAGACCGTGCGTGTA 59.881 40.000 0.00 0.00 0.00 2.90
548 549 5.870978 ACTATTTTAAAGACCGTGCGTGTAT 59.129 36.000 0.00 0.00 0.00 2.29
549 550 7.009448 CACTATTTTAAAGACCGTGCGTGTATA 59.991 37.037 0.00 0.00 0.00 1.47
550 551 6.724694 ATTTTAAAGACCGTGCGTGTATAA 57.275 33.333 0.00 0.00 0.00 0.98
551 552 5.766702 TTTAAAGACCGTGCGTGTATAAG 57.233 39.130 0.00 0.00 0.00 1.73
552 553 1.636988 AAGACCGTGCGTGTATAAGC 58.363 50.000 0.00 0.00 0.00 3.09
553 554 0.815734 AGACCGTGCGTGTATAAGCT 59.184 50.000 0.00 0.00 32.19 3.74
554 555 1.203994 AGACCGTGCGTGTATAAGCTT 59.796 47.619 3.48 3.48 32.19 3.74
555 556 1.323534 GACCGTGCGTGTATAAGCTTG 59.676 52.381 9.86 0.00 32.19 4.01
556 557 1.337447 ACCGTGCGTGTATAAGCTTGT 60.337 47.619 9.86 4.77 32.19 3.16
557 558 1.060553 CCGTGCGTGTATAAGCTTGTG 59.939 52.381 9.86 0.00 32.19 3.33
558 559 1.526986 CGTGCGTGTATAAGCTTGTGC 60.527 52.381 9.86 6.80 40.05 4.57
574 575 4.770874 GCTGCGGGCGGACCTAAA 62.771 66.667 3.14 0.00 36.97 1.85
575 576 2.046700 CTGCGGGCGGACCTAAAA 60.047 61.111 0.00 0.00 36.97 1.52
576 577 1.451387 CTGCGGGCGGACCTAAAAT 60.451 57.895 0.00 0.00 36.97 1.82
577 578 1.001887 TGCGGGCGGACCTAAAATT 60.002 52.632 0.00 0.00 36.97 1.82
578 579 0.609681 TGCGGGCGGACCTAAAATTT 60.610 50.000 0.00 0.00 36.97 1.82
579 580 0.179148 GCGGGCGGACCTAAAATTTG 60.179 55.000 0.00 0.00 36.97 2.32
580 581 1.455248 CGGGCGGACCTAAAATTTGA 58.545 50.000 0.00 0.00 36.97 2.69
581 582 2.021457 CGGGCGGACCTAAAATTTGAT 58.979 47.619 0.00 0.00 36.97 2.57
582 583 2.032924 CGGGCGGACCTAAAATTTGATC 59.967 50.000 0.00 0.00 36.97 2.92
583 584 3.020984 GGGCGGACCTAAAATTTGATCA 58.979 45.455 0.00 0.00 35.85 2.92
584 585 3.181490 GGGCGGACCTAAAATTTGATCAC 60.181 47.826 0.00 0.00 35.85 3.06
585 586 3.181490 GGCGGACCTAAAATTTGATCACC 60.181 47.826 0.00 0.00 0.00 4.02
586 587 3.694566 GCGGACCTAAAATTTGATCACCT 59.305 43.478 0.00 0.00 0.00 4.00
587 588 4.879545 GCGGACCTAAAATTTGATCACCTA 59.120 41.667 0.00 0.00 0.00 3.08
588 589 5.355910 GCGGACCTAAAATTTGATCACCTAA 59.644 40.000 0.00 0.00 0.00 2.69
589 590 6.458342 GCGGACCTAAAATTTGATCACCTAAG 60.458 42.308 0.00 0.00 0.00 2.18
590 591 6.458342 CGGACCTAAAATTTGATCACCTAAGC 60.458 42.308 0.00 0.00 0.00 3.09
591 592 6.183360 GGACCTAAAATTTGATCACCTAAGCC 60.183 42.308 0.00 0.00 0.00 4.35
592 593 5.656859 ACCTAAAATTTGATCACCTAAGCCC 59.343 40.000 0.00 0.00 0.00 5.19
593 594 5.893824 CCTAAAATTTGATCACCTAAGCCCT 59.106 40.000 0.00 0.00 0.00 5.19
594 595 5.921962 AAAATTTGATCACCTAAGCCCTC 57.078 39.130 0.00 0.00 0.00 4.30
595 596 4.870021 AATTTGATCACCTAAGCCCTCT 57.130 40.909 0.00 0.00 0.00 3.69
596 597 3.914426 TTTGATCACCTAAGCCCTCTC 57.086 47.619 0.00 0.00 0.00 3.20
597 598 2.856760 TGATCACCTAAGCCCTCTCT 57.143 50.000 0.00 0.00 0.00 3.10
598 599 2.672098 TGATCACCTAAGCCCTCTCTC 58.328 52.381 0.00 0.00 0.00 3.20
599 600 2.246067 TGATCACCTAAGCCCTCTCTCT 59.754 50.000 0.00 0.00 0.00 3.10
600 601 3.463704 TGATCACCTAAGCCCTCTCTCTA 59.536 47.826 0.00 0.00 0.00 2.43
601 602 4.079154 TGATCACCTAAGCCCTCTCTCTAA 60.079 45.833 0.00 0.00 0.00 2.10
602 603 4.332683 TCACCTAAGCCCTCTCTCTAAA 57.667 45.455 0.00 0.00 0.00 1.85
603 604 4.684724 TCACCTAAGCCCTCTCTCTAAAA 58.315 43.478 0.00 0.00 0.00 1.52
604 605 5.091552 TCACCTAAGCCCTCTCTCTAAAAA 58.908 41.667 0.00 0.00 0.00 1.94
605 606 5.726793 TCACCTAAGCCCTCTCTCTAAAAAT 59.273 40.000 0.00 0.00 0.00 1.82
606 607 6.901300 TCACCTAAGCCCTCTCTCTAAAAATA 59.099 38.462 0.00 0.00 0.00 1.40
607 608 7.569111 TCACCTAAGCCCTCTCTCTAAAAATAT 59.431 37.037 0.00 0.00 0.00 1.28
608 609 8.214364 CACCTAAGCCCTCTCTCTAAAAATATT 58.786 37.037 0.00 0.00 0.00 1.28
609 610 9.448587 ACCTAAGCCCTCTCTCTAAAAATATTA 57.551 33.333 0.00 0.00 0.00 0.98
613 614 8.749696 AGCCCTCTCTCTAAAAATATTATCCT 57.250 34.615 0.00 0.00 0.00 3.24
614 615 9.845214 AGCCCTCTCTCTAAAAATATTATCCTA 57.155 33.333 0.00 0.00 0.00 2.94
615 616 9.878667 GCCCTCTCTCTAAAAATATTATCCTAC 57.121 37.037 0.00 0.00 0.00 3.18
632 633 3.945285 TCCTACAAATTTTCTCCGCCATC 59.055 43.478 0.00 0.00 0.00 3.51
648 649 2.937149 GCCATCGGAAAGTAGAGAAACC 59.063 50.000 0.00 0.00 0.00 3.27
652 653 4.903045 TCGGAAAGTAGAGAAACCCAAT 57.097 40.909 0.00 0.00 0.00 3.16
659 660 9.020731 GGAAAGTAGAGAAACCCAATGATTTTA 57.979 33.333 0.00 0.00 0.00 1.52
714 715 1.480219 CTAGGCACGAATTCCGACGC 61.480 60.000 0.00 4.40 41.76 5.19
760 761 8.029522 AGTCTATGCACGGTAGATATTTGTATG 58.970 37.037 0.00 0.00 31.41 2.39
765 766 4.621460 CACGGTAGATATTTGTATGAGCGG 59.379 45.833 0.00 0.00 0.00 5.52
812 813 6.093082 GCCTCGTGGTTTAGCTTAAGAATAAA 59.907 38.462 6.67 7.82 35.27 1.40
817 818 9.113876 CGTGGTTTAGCTTAAGAATAAACAAAG 57.886 33.333 27.45 20.99 39.86 2.77
854 856 0.539051 AGGGAGCAATCTTCCTCACG 59.461 55.000 0.00 0.00 45.54 4.35
876 878 2.302260 CCTCGATCTAGAAGCACTCCA 58.698 52.381 0.00 0.00 0.00 3.86
878 880 1.671328 TCGATCTAGAAGCACTCCACG 59.329 52.381 0.00 0.00 0.00 4.94
892 894 0.251209 TCCACGCTCCACAGTACTCT 60.251 55.000 0.00 0.00 0.00 3.24
1053 1058 2.265904 CGGGATCGCCGACAGGATA 61.266 63.158 15.18 0.00 41.02 2.59
2103 2129 5.235516 TGATCTTACTCCTCCAAACGAAAC 58.764 41.667 0.00 0.00 0.00 2.78
2132 2162 1.590238 CGAGTTGATCGCATTGAGGTC 59.410 52.381 0.00 0.00 45.98 3.85
2133 2163 1.590238 GAGTTGATCGCATTGAGGTCG 59.410 52.381 0.00 0.00 0.00 4.79
2134 2164 0.652592 GTTGATCGCATTGAGGTCGG 59.347 55.000 0.00 0.00 0.00 4.79
2135 2165 0.249120 TTGATCGCATTGAGGTCGGT 59.751 50.000 0.00 0.00 0.00 4.69
2242 2320 2.633488 TCAAATGTGTCACCGTGTTCA 58.367 42.857 0.00 0.00 0.00 3.18
2243 2321 2.611751 TCAAATGTGTCACCGTGTTCAG 59.388 45.455 0.00 0.00 0.00 3.02
2331 3044 1.086067 CGTGCAGCCTGATTGACGAT 61.086 55.000 0.00 0.00 0.00 3.73
2332 3045 0.654683 GTGCAGCCTGATTGACGATC 59.345 55.000 0.00 0.00 35.21 3.69
2728 3441 6.128634 GGTGTTTTCAATACGAGACTGGTTAG 60.129 42.308 0.00 0.00 0.00 2.34
2740 3453 3.018149 GACTGGTTAGGTCTCAGTCGAT 58.982 50.000 6.90 0.00 44.91 3.59
2744 3457 5.125739 ACTGGTTAGGTCTCAGTCGATTAAG 59.874 44.000 0.00 0.00 37.16 1.85
2745 3458 5.258841 TGGTTAGGTCTCAGTCGATTAAGA 58.741 41.667 0.00 0.00 0.00 2.10
2746 3459 5.125097 TGGTTAGGTCTCAGTCGATTAAGAC 59.875 44.000 2.63 2.63 41.23 3.01
2759 3472 7.167831 GTCGATTAAGACTTAGCCAAATCTC 57.832 40.000 0.00 0.00 38.09 2.75
2760 3473 6.757010 GTCGATTAAGACTTAGCCAAATCTCA 59.243 38.462 0.00 0.00 38.09 3.27
2761 3474 7.277981 GTCGATTAAGACTTAGCCAAATCTCAA 59.722 37.037 0.00 0.00 38.09 3.02
2762 3475 7.822334 TCGATTAAGACTTAGCCAAATCTCAAA 59.178 33.333 6.23 0.00 0.00 2.69
2763 3476 8.616076 CGATTAAGACTTAGCCAAATCTCAAAT 58.384 33.333 6.23 0.00 0.00 2.32
2764 3477 9.727627 GATTAAGACTTAGCCAAATCTCAAATG 57.272 33.333 0.00 0.00 0.00 2.32
2765 3478 8.862325 TTAAGACTTAGCCAAATCTCAAATGA 57.138 30.769 0.00 0.00 0.00 2.57
2766 3479 7.765695 AAGACTTAGCCAAATCTCAAATGAA 57.234 32.000 0.00 0.00 0.00 2.57
2767 3480 7.951347 AGACTTAGCCAAATCTCAAATGAAT 57.049 32.000 0.00 0.00 0.00 2.57
2768 3481 7.994194 AGACTTAGCCAAATCTCAAATGAATC 58.006 34.615 0.00 0.00 0.00 2.52
2769 3482 7.833183 AGACTTAGCCAAATCTCAAATGAATCT 59.167 33.333 0.00 0.00 0.00 2.40
2770 3483 7.994194 ACTTAGCCAAATCTCAAATGAATCTC 58.006 34.615 0.00 0.00 0.00 2.75
2771 3484 5.848833 AGCCAAATCTCAAATGAATCTCC 57.151 39.130 0.00 0.00 0.00 3.71
2772 3485 5.266788 AGCCAAATCTCAAATGAATCTCCA 58.733 37.500 0.00 0.00 0.00 3.86
2773 3486 5.897824 AGCCAAATCTCAAATGAATCTCCAT 59.102 36.000 0.00 0.00 0.00 3.41
2774 3487 5.983720 GCCAAATCTCAAATGAATCTCCATG 59.016 40.000 0.00 0.00 0.00 3.66
2775 3488 5.983720 CCAAATCTCAAATGAATCTCCATGC 59.016 40.000 0.00 0.00 0.00 4.06
2776 3489 6.406512 CCAAATCTCAAATGAATCTCCATGCA 60.407 38.462 0.00 0.00 0.00 3.96
2777 3490 6.785337 AATCTCAAATGAATCTCCATGCAA 57.215 33.333 0.00 0.00 0.00 4.08
2778 3491 6.785337 ATCTCAAATGAATCTCCATGCAAA 57.215 33.333 0.00 0.00 0.00 3.68
2779 3492 6.593268 TCTCAAATGAATCTCCATGCAAAA 57.407 33.333 0.00 0.00 0.00 2.44
2780 3493 7.177832 TCTCAAATGAATCTCCATGCAAAAT 57.822 32.000 0.00 0.00 0.00 1.82
2781 3494 7.262772 TCTCAAATGAATCTCCATGCAAAATC 58.737 34.615 0.00 0.00 0.00 2.17
2782 3495 6.937392 TCAAATGAATCTCCATGCAAAATCA 58.063 32.000 0.00 0.00 0.00 2.57
2783 3496 7.387643 TCAAATGAATCTCCATGCAAAATCAA 58.612 30.769 0.00 0.00 0.00 2.57
2784 3497 7.878644 TCAAATGAATCTCCATGCAAAATCAAA 59.121 29.630 0.00 0.00 0.00 2.69
2785 3498 8.508062 CAAATGAATCTCCATGCAAAATCAAAA 58.492 29.630 0.00 0.00 0.00 2.44
2786 3499 7.843490 ATGAATCTCCATGCAAAATCAAAAG 57.157 32.000 0.00 0.00 0.00 2.27
2787 3500 6.995364 TGAATCTCCATGCAAAATCAAAAGA 58.005 32.000 0.00 0.00 0.00 2.52
2788 3501 7.443477 TGAATCTCCATGCAAAATCAAAAGAA 58.557 30.769 0.00 0.00 0.00 2.52
2789 3502 8.098286 TGAATCTCCATGCAAAATCAAAAGAAT 58.902 29.630 0.00 0.00 0.00 2.40
2790 3503 9.590451 GAATCTCCATGCAAAATCAAAAGAATA 57.410 29.630 0.00 0.00 0.00 1.75
2815 3528 6.952935 AACATCTGAGACATAACGAAACTC 57.047 37.500 0.00 0.00 0.00 3.01
2816 3529 6.025749 ACATCTGAGACATAACGAAACTCA 57.974 37.500 0.00 0.00 36.42 3.41
2821 3534 7.499438 CTGAGACATAACGAAACTCAGTTAG 57.501 40.000 0.00 0.00 45.11 2.34
2822 3535 5.862323 TGAGACATAACGAAACTCAGTTAGC 59.138 40.000 0.00 0.00 36.44 3.09
2823 3536 5.779922 AGACATAACGAAACTCAGTTAGCA 58.220 37.500 0.00 0.00 36.44 3.49
2824 3537 6.220930 AGACATAACGAAACTCAGTTAGCAA 58.779 36.000 0.00 0.00 36.44 3.91
2825 3538 6.704493 AGACATAACGAAACTCAGTTAGCAAA 59.296 34.615 0.00 0.00 36.44 3.68
2826 3539 7.225931 AGACATAACGAAACTCAGTTAGCAAAA 59.774 33.333 0.00 0.00 36.44 2.44
2827 3540 7.871853 ACATAACGAAACTCAGTTAGCAAAAT 58.128 30.769 0.00 0.00 36.44 1.82
2828 3541 8.349983 ACATAACGAAACTCAGTTAGCAAAATT 58.650 29.630 0.00 0.00 36.44 1.82
2829 3542 8.629986 CATAACGAAACTCAGTTAGCAAAATTG 58.370 33.333 0.00 0.00 36.44 2.32
2830 3543 6.131544 ACGAAACTCAGTTAGCAAAATTGT 57.868 33.333 0.00 0.00 0.00 2.71
2831 3544 6.560711 ACGAAACTCAGTTAGCAAAATTGTT 58.439 32.000 0.00 0.00 0.00 2.83
2832 3545 6.691388 ACGAAACTCAGTTAGCAAAATTGTTC 59.309 34.615 0.00 0.00 0.00 3.18
2833 3546 6.142320 CGAAACTCAGTTAGCAAAATTGTTCC 59.858 38.462 0.00 0.00 0.00 3.62
2834 3547 6.463995 AACTCAGTTAGCAAAATTGTTCCA 57.536 33.333 0.00 0.00 0.00 3.53
2835 3548 6.463995 ACTCAGTTAGCAAAATTGTTCCAA 57.536 33.333 0.00 0.00 0.00 3.53
2836 3549 7.054491 ACTCAGTTAGCAAAATTGTTCCAAT 57.946 32.000 0.00 0.00 0.00 3.16
2837 3550 8.177119 ACTCAGTTAGCAAAATTGTTCCAATA 57.823 30.769 0.00 0.00 0.00 1.90
2838 3551 8.806146 ACTCAGTTAGCAAAATTGTTCCAATAT 58.194 29.630 0.00 0.00 0.00 1.28
2846 3559 9.985730 AGCAAAATTGTTCCAATATATACCATG 57.014 29.630 0.00 0.00 0.00 3.66
2847 3560 9.206870 GCAAAATTGTTCCAATATATACCATGG 57.793 33.333 11.19 11.19 0.00 3.66
2848 3561 9.709495 CAAAATTGTTCCAATATATACCATGGG 57.291 33.333 18.09 0.00 33.66 4.00
2849 3562 9.445973 AAAATTGTTCCAATATATACCATGGGT 57.554 29.630 18.09 6.93 40.16 4.51
2850 3563 8.421249 AATTGTTCCAATATATACCATGGGTG 57.579 34.615 18.09 2.17 36.19 4.61
2859 3572 4.380945 CCATGGGTGGGTGGGTGG 62.381 72.222 2.85 0.00 42.11 4.61
2860 3573 4.380945 CATGGGTGGGTGGGTGGG 62.381 72.222 0.00 0.00 0.00 4.61
2864 3577 4.060667 GGTGGGTGGGTGGGGATG 62.061 72.222 0.00 0.00 0.00 3.51
2865 3578 4.060667 GTGGGTGGGTGGGGATGG 62.061 72.222 0.00 0.00 0.00 3.51
2974 3687 6.485648 CCCCACTTACTAACCAGCAAATATAC 59.514 42.308 0.00 0.00 0.00 1.47
2980 3693 9.109393 CTTACTAACCAGCAAATATACATGTGT 57.891 33.333 9.11 4.04 0.00 3.72
3023 3736 4.568359 CACCACGACCTGATTCTCTAATTG 59.432 45.833 0.00 0.00 0.00 2.32
3026 3739 5.451937 CCACGACCTGATTCTCTAATTGCTA 60.452 44.000 0.00 0.00 0.00 3.49
3030 3743 6.461648 CGACCTGATTCTCTAATTGCTAGGAA 60.462 42.308 0.00 0.00 0.00 3.36
3031 3744 6.587273 ACCTGATTCTCTAATTGCTAGGAAC 58.413 40.000 0.00 0.00 0.00 3.62
3032 3745 6.385467 ACCTGATTCTCTAATTGCTAGGAACT 59.615 38.462 0.00 0.00 46.37 3.01
3033 3746 6.705381 CCTGATTCTCTAATTGCTAGGAACTG 59.295 42.308 0.00 0.00 41.52 3.16
3034 3747 6.051717 TGATTCTCTAATTGCTAGGAACTGC 58.948 40.000 0.00 0.00 41.52 4.40
3035 3748 5.683876 TTCTCTAATTGCTAGGAACTGCT 57.316 39.130 0.00 0.00 41.52 4.24
3036 3749 5.016051 TCTCTAATTGCTAGGAACTGCTG 57.984 43.478 0.00 0.00 41.52 4.41
3037 3750 4.125703 CTCTAATTGCTAGGAACTGCTGG 58.874 47.826 0.00 0.00 41.52 4.85
3038 3751 2.887151 AATTGCTAGGAACTGCTGGT 57.113 45.000 0.00 0.00 41.52 4.00
3039 3752 2.119801 ATTGCTAGGAACTGCTGGTG 57.880 50.000 0.00 0.00 41.52 4.17
3040 3753 0.036732 TTGCTAGGAACTGCTGGTGG 59.963 55.000 0.00 0.00 41.52 4.61
3041 3754 1.127567 TGCTAGGAACTGCTGGTGGT 61.128 55.000 0.00 0.00 41.52 4.16
3042 3755 0.902531 GCTAGGAACTGCTGGTGGTA 59.097 55.000 0.00 0.00 41.52 3.25
3043 3756 1.134670 GCTAGGAACTGCTGGTGGTAG 60.135 57.143 0.00 0.00 41.52 3.18
3044 3757 2.457598 CTAGGAACTGCTGGTGGTAGA 58.542 52.381 0.00 0.00 41.52 2.59
3045 3758 1.729586 AGGAACTGCTGGTGGTAGAA 58.270 50.000 0.00 0.00 37.18 2.10
3046 3759 1.625818 AGGAACTGCTGGTGGTAGAAG 59.374 52.381 0.00 0.00 37.18 2.85
3047 3760 1.623811 GGAACTGCTGGTGGTAGAAGA 59.376 52.381 0.00 0.00 0.00 2.87
3048 3761 2.613223 GGAACTGCTGGTGGTAGAAGAC 60.613 54.545 0.00 0.00 0.00 3.01
3049 3762 2.016905 ACTGCTGGTGGTAGAAGACT 57.983 50.000 0.00 0.00 0.00 3.24
3050 3763 2.330216 ACTGCTGGTGGTAGAAGACTT 58.670 47.619 0.00 0.00 0.00 3.01
3051 3764 2.706190 ACTGCTGGTGGTAGAAGACTTT 59.294 45.455 0.00 0.00 0.00 2.66
3052 3765 3.070018 CTGCTGGTGGTAGAAGACTTTG 58.930 50.000 0.00 0.00 0.00 2.77
3053 3766 2.703536 TGCTGGTGGTAGAAGACTTTGA 59.296 45.455 0.00 0.00 0.00 2.69
3054 3767 3.327757 TGCTGGTGGTAGAAGACTTTGAT 59.672 43.478 0.00 0.00 0.00 2.57
3055 3768 3.935828 GCTGGTGGTAGAAGACTTTGATC 59.064 47.826 0.00 0.00 0.00 2.92
3056 3769 4.508662 CTGGTGGTAGAAGACTTTGATCC 58.491 47.826 0.00 0.00 0.00 3.36
3057 3770 3.056107 TGGTGGTAGAAGACTTTGATCCG 60.056 47.826 0.00 0.00 0.00 4.18
3058 3771 3.522553 GTGGTAGAAGACTTTGATCCGG 58.477 50.000 0.00 0.00 0.00 5.14
3059 3772 2.093658 TGGTAGAAGACTTTGATCCGGC 60.094 50.000 0.00 0.00 0.00 6.13
3060 3773 2.093658 GGTAGAAGACTTTGATCCGGCA 60.094 50.000 0.00 0.00 0.00 5.69
3061 3774 2.859165 AGAAGACTTTGATCCGGCAA 57.141 45.000 0.00 0.00 0.00 4.52
3062 3775 3.140325 AGAAGACTTTGATCCGGCAAA 57.860 42.857 0.00 1.22 36.43 3.68
3063 3776 3.486383 AGAAGACTTTGATCCGGCAAAA 58.514 40.909 8.35 2.99 37.32 2.44
3064 3777 3.888930 AGAAGACTTTGATCCGGCAAAAA 59.111 39.130 8.35 2.68 37.32 1.94
3065 3778 3.643159 AGACTTTGATCCGGCAAAAAC 57.357 42.857 8.35 5.88 37.32 2.43
3066 3779 2.296190 AGACTTTGATCCGGCAAAAACC 59.704 45.455 8.35 2.11 37.32 3.27
3067 3780 2.035321 GACTTTGATCCGGCAAAAACCA 59.965 45.455 8.35 0.00 37.32 3.67
3068 3781 2.632512 ACTTTGATCCGGCAAAAACCAT 59.367 40.909 8.35 0.00 37.32 3.55
3069 3782 3.070878 ACTTTGATCCGGCAAAAACCATT 59.929 39.130 8.35 0.00 37.32 3.16
3070 3783 2.739885 TGATCCGGCAAAAACCATTG 57.260 45.000 0.00 0.00 0.00 2.82
3071 3784 2.242926 TGATCCGGCAAAAACCATTGA 58.757 42.857 0.00 0.00 31.84 2.57
3072 3785 2.630098 TGATCCGGCAAAAACCATTGAA 59.370 40.909 0.00 0.00 31.84 2.69
3073 3786 2.810439 TCCGGCAAAAACCATTGAAG 57.190 45.000 0.00 0.00 31.84 3.02
3074 3787 2.311463 TCCGGCAAAAACCATTGAAGA 58.689 42.857 0.00 0.00 31.84 2.87
3075 3788 2.896685 TCCGGCAAAAACCATTGAAGAT 59.103 40.909 0.00 0.00 31.84 2.40
3076 3789 3.323403 TCCGGCAAAAACCATTGAAGATT 59.677 39.130 0.00 0.00 31.84 2.40
3077 3790 4.524714 TCCGGCAAAAACCATTGAAGATTA 59.475 37.500 0.00 0.00 31.84 1.75
3078 3791 5.186797 TCCGGCAAAAACCATTGAAGATTAT 59.813 36.000 0.00 0.00 31.84 1.28
3079 3792 5.519927 CCGGCAAAAACCATTGAAGATTATC 59.480 40.000 0.00 0.00 31.84 1.75
3080 3793 5.229887 CGGCAAAAACCATTGAAGATTATCG 59.770 40.000 0.00 0.00 31.84 2.92
3081 3794 6.099341 GGCAAAAACCATTGAAGATTATCGT 58.901 36.000 0.00 0.00 31.84 3.73
3082 3795 6.589907 GGCAAAAACCATTGAAGATTATCGTT 59.410 34.615 0.00 0.00 31.84 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.832248 TCTGTGTTGGGTGACTCATTATC 58.168 43.478 0.00 0.00 0.00 1.75
25 26 1.349026 CCTCTGTGTTGGGTGACTCAT 59.651 52.381 0.00 0.00 0.00 2.90
44 45 4.020662 TGGGCTGAAAATTTATCACCAACC 60.021 41.667 0.00 0.00 0.00 3.77
48 49 5.994668 TGTTTTGGGCTGAAAATTTATCACC 59.005 36.000 0.00 3.24 0.00 4.02
53 54 6.536941 GTGACTTGTTTTGGGCTGAAAATTTA 59.463 34.615 0.00 0.00 0.00 1.40
203 204 7.362574 GCCACTATGTAAGTTGCTGGAAAATTA 60.363 37.037 1.81 0.00 42.28 1.40
211 212 3.599343 TCTGCCACTATGTAAGTTGCTG 58.401 45.455 3.34 3.09 45.07 4.41
212 213 3.261897 ACTCTGCCACTATGTAAGTTGCT 59.738 43.478 3.34 0.00 45.07 3.91
252 253 6.210984 TCTTTTAAAGACTGAGGGAGTACTCC 59.789 42.308 30.72 30.72 39.78 3.85
253 254 7.039574 ACTCTTTTAAAGACTGAGGGAGTACTC 60.040 40.741 14.87 14.87 33.83 2.59
254 255 6.783482 ACTCTTTTAAAGACTGAGGGAGTACT 59.217 38.462 2.94 0.00 33.83 2.73
255 256 6.869388 CACTCTTTTAAAGACTGAGGGAGTAC 59.131 42.308 2.94 0.00 33.83 2.73
256 257 6.553852 ACACTCTTTTAAAGACTGAGGGAGTA 59.446 38.462 17.04 0.00 33.83 2.59
257 258 5.367060 ACACTCTTTTAAAGACTGAGGGAGT 59.633 40.000 17.04 4.38 37.76 3.85
258 259 5.859495 ACACTCTTTTAAAGACTGAGGGAG 58.141 41.667 17.04 3.85 32.95 4.30
259 260 5.888982 ACACTCTTTTAAAGACTGAGGGA 57.111 39.130 17.04 0.00 32.95 4.20
260 261 6.647067 CAGTACACTCTTTTAAAGACTGAGGG 59.353 42.308 17.04 6.81 31.75 4.30
261 262 7.210873 ACAGTACACTCTTTTAAAGACTGAGG 58.789 38.462 21.95 9.07 33.38 3.86
262 263 7.921214 TGACAGTACACTCTTTTAAAGACTGAG 59.079 37.037 21.95 9.36 33.38 3.35
263 264 7.778083 TGACAGTACACTCTTTTAAAGACTGA 58.222 34.615 21.95 5.94 33.38 3.41
264 265 8.328864 GTTGACAGTACACTCTTTTAAAGACTG 58.671 37.037 16.68 16.68 34.56 3.51
265 266 8.258708 AGTTGACAGTACACTCTTTTAAAGACT 58.741 33.333 2.94 0.00 33.12 3.24
266 267 8.421673 AGTTGACAGTACACTCTTTTAAAGAC 57.578 34.615 2.94 0.00 33.12 3.01
267 268 9.444600 AAAGTTGACAGTACACTCTTTTAAAGA 57.555 29.630 7.22 7.22 35.87 2.52
268 269 9.490663 CAAAGTTGACAGTACACTCTTTTAAAG 57.509 33.333 0.00 0.00 0.00 1.85
269 270 9.005777 ACAAAGTTGACAGTACACTCTTTTAAA 57.994 29.630 0.00 0.00 0.00 1.52
270 271 8.556213 ACAAAGTTGACAGTACACTCTTTTAA 57.444 30.769 0.00 0.00 0.00 1.52
271 272 9.656040 TTACAAAGTTGACAGTACACTCTTTTA 57.344 29.630 0.00 0.00 0.00 1.52
272 273 8.556213 TTACAAAGTTGACAGTACACTCTTTT 57.444 30.769 0.00 0.00 0.00 2.27
273 274 8.556213 TTTACAAAGTTGACAGTACACTCTTT 57.444 30.769 0.00 0.00 0.00 2.52
274 275 8.556213 TTTTACAAAGTTGACAGTACACTCTT 57.444 30.769 0.00 0.00 0.00 2.85
275 276 7.280205 CCTTTTACAAAGTTGACAGTACACTCT 59.720 37.037 0.00 0.00 0.00 3.24
276 277 7.065443 ACCTTTTACAAAGTTGACAGTACACTC 59.935 37.037 0.00 0.00 0.00 3.51
277 278 6.882678 ACCTTTTACAAAGTTGACAGTACACT 59.117 34.615 0.00 0.00 0.00 3.55
278 279 7.080353 ACCTTTTACAAAGTTGACAGTACAC 57.920 36.000 0.00 0.00 0.00 2.90
279 280 6.036300 CGACCTTTTACAAAGTTGACAGTACA 59.964 38.462 0.00 0.00 0.00 2.90
280 281 6.256321 TCGACCTTTTACAAAGTTGACAGTAC 59.744 38.462 0.00 0.00 0.00 2.73
281 282 6.339730 TCGACCTTTTACAAAGTTGACAGTA 58.660 36.000 0.00 0.00 0.00 2.74
282 283 5.180271 TCGACCTTTTACAAAGTTGACAGT 58.820 37.500 0.00 0.00 0.00 3.55
283 284 5.728351 TCGACCTTTTACAAAGTTGACAG 57.272 39.130 0.00 0.00 0.00 3.51
284 285 5.644636 AGTTCGACCTTTTACAAAGTTGACA 59.355 36.000 0.00 0.00 0.00 3.58
285 286 6.115450 AGTTCGACCTTTTACAAAGTTGAC 57.885 37.500 0.00 0.00 0.00 3.18
286 287 6.746745 AAGTTCGACCTTTTACAAAGTTGA 57.253 33.333 0.00 0.00 0.00 3.18
287 288 7.806149 AAAAGTTCGACCTTTTACAAAGTTG 57.194 32.000 17.87 0.00 41.58 3.16
332 333 9.347240 GATGGCATAGATGTTGGCTATTATTAT 57.653 33.333 0.00 0.00 40.12 1.28
333 334 8.328014 TGATGGCATAGATGTTGGCTATTATTA 58.672 33.333 0.00 0.00 40.12 0.98
334 335 7.177184 TGATGGCATAGATGTTGGCTATTATT 58.823 34.615 0.00 0.00 40.12 1.40
335 336 6.724351 TGATGGCATAGATGTTGGCTATTAT 58.276 36.000 0.00 0.00 40.12 1.28
336 337 6.125589 TGATGGCATAGATGTTGGCTATTA 57.874 37.500 0.00 0.00 40.12 0.98
337 338 4.989277 TGATGGCATAGATGTTGGCTATT 58.011 39.130 0.00 0.00 40.12 1.73
338 339 4.645863 TGATGGCATAGATGTTGGCTAT 57.354 40.909 0.00 0.00 40.12 2.97
339 340 4.436113 TTGATGGCATAGATGTTGGCTA 57.564 40.909 0.00 0.00 40.12 3.93
340 341 3.301794 TTGATGGCATAGATGTTGGCT 57.698 42.857 0.00 0.00 40.12 4.75
341 342 4.595762 ATTTGATGGCATAGATGTTGGC 57.404 40.909 0.00 0.00 39.89 4.52
342 343 6.889301 ACTATTTGATGGCATAGATGTTGG 57.111 37.500 0.00 0.00 0.00 3.77
343 344 7.173735 TGCTACTATTTGATGGCATAGATGTTG 59.826 37.037 0.00 0.00 0.00 3.33
344 345 7.226441 TGCTACTATTTGATGGCATAGATGTT 58.774 34.615 0.00 0.00 0.00 2.71
345 346 6.772605 TGCTACTATTTGATGGCATAGATGT 58.227 36.000 0.00 0.00 0.00 3.06
346 347 7.860918 ATGCTACTATTTGATGGCATAGATG 57.139 36.000 0.00 0.00 38.41 2.90
347 348 8.327271 AGAATGCTACTATTTGATGGCATAGAT 58.673 33.333 0.00 0.00 39.10 1.98
348 349 7.683578 AGAATGCTACTATTTGATGGCATAGA 58.316 34.615 0.00 0.00 39.10 1.98
349 350 7.823310 AGAGAATGCTACTATTTGATGGCATAG 59.177 37.037 0.00 0.00 39.10 2.23
350 351 7.605309 CAGAGAATGCTACTATTTGATGGCATA 59.395 37.037 0.00 0.00 39.10 3.14
351 352 6.430308 CAGAGAATGCTACTATTTGATGGCAT 59.570 38.462 0.00 0.00 41.30 4.40
352 353 5.761726 CAGAGAATGCTACTATTTGATGGCA 59.238 40.000 0.00 0.00 0.00 4.92
353 354 6.238610 CAGAGAATGCTACTATTTGATGGC 57.761 41.667 0.00 0.00 0.00 4.40
446 447 9.866798 TGTGCAAAAATATGTCAATGCTTATAA 57.133 25.926 0.00 0.00 34.97 0.98
447 448 9.866798 TTGTGCAAAAATATGTCAATGCTTATA 57.133 25.926 0.00 0.00 34.97 0.98
448 449 8.774890 TTGTGCAAAAATATGTCAATGCTTAT 57.225 26.923 0.00 0.00 34.97 1.73
449 450 8.494347 GTTTGTGCAAAAATATGTCAATGCTTA 58.506 29.630 5.11 0.00 34.97 3.09
450 451 7.227116 AGTTTGTGCAAAAATATGTCAATGCTT 59.773 29.630 5.11 0.00 34.97 3.91
451 452 6.707161 AGTTTGTGCAAAAATATGTCAATGCT 59.293 30.769 5.11 0.00 34.97 3.79
452 453 6.890558 AGTTTGTGCAAAAATATGTCAATGC 58.109 32.000 5.11 0.00 31.33 3.56
453 454 8.549548 TCAAGTTTGTGCAAAAATATGTCAATG 58.450 29.630 5.11 0.00 31.33 2.82
454 455 8.659925 TCAAGTTTGTGCAAAAATATGTCAAT 57.340 26.923 5.11 0.00 31.33 2.57
455 456 8.659925 ATCAAGTTTGTGCAAAAATATGTCAA 57.340 26.923 5.11 0.00 31.33 3.18
456 457 7.924947 TGATCAAGTTTGTGCAAAAATATGTCA 59.075 29.630 5.11 10.45 31.33 3.58
457 458 8.296799 TGATCAAGTTTGTGCAAAAATATGTC 57.703 30.769 5.11 8.46 31.33 3.06
458 459 8.659925 TTGATCAAGTTTGTGCAAAAATATGT 57.340 26.923 5.11 0.02 31.33 2.29
459 460 9.372541 GTTTGATCAAGTTTGTGCAAAAATATG 57.627 29.630 5.11 8.01 35.69 1.78
460 461 8.558700 GGTTTGATCAAGTTTGTGCAAAAATAT 58.441 29.630 5.11 0.00 35.69 1.28
461 462 7.768120 AGGTTTGATCAAGTTTGTGCAAAAATA 59.232 29.630 5.11 0.00 35.69 1.40
462 463 6.598850 AGGTTTGATCAAGTTTGTGCAAAAAT 59.401 30.769 5.11 0.00 35.69 1.82
463 464 5.936956 AGGTTTGATCAAGTTTGTGCAAAAA 59.063 32.000 8.41 0.00 35.69 1.94
464 465 5.486526 AGGTTTGATCAAGTTTGTGCAAAA 58.513 33.333 8.41 0.00 35.69 2.44
465 466 5.083533 AGGTTTGATCAAGTTTGTGCAAA 57.916 34.783 8.41 9.22 33.51 3.68
466 467 4.734398 AGGTTTGATCAAGTTTGTGCAA 57.266 36.364 8.41 0.00 0.00 4.08
467 468 4.734398 AAGGTTTGATCAAGTTTGTGCA 57.266 36.364 8.41 0.00 0.00 4.57
468 469 6.503524 TCTTAAGGTTTGATCAAGTTTGTGC 58.496 36.000 8.41 0.00 0.00 4.57
469 470 9.831737 CTATCTTAAGGTTTGATCAAGTTTGTG 57.168 33.333 8.41 0.00 0.00 3.33
470 471 9.574516 ACTATCTTAAGGTTTGATCAAGTTTGT 57.425 29.630 8.41 0.00 0.00 2.83
481 482 8.608844 AGACAGTCAAACTATCTTAAGGTTTG 57.391 34.615 20.81 20.81 46.18 2.93
483 484 9.708092 GTTAGACAGTCAAACTATCTTAAGGTT 57.292 33.333 2.66 0.00 33.42 3.50
484 485 8.867097 TGTTAGACAGTCAAACTATCTTAAGGT 58.133 33.333 2.66 0.00 33.42 3.50
485 486 9.706691 TTGTTAGACAGTCAAACTATCTTAAGG 57.293 33.333 2.66 0.00 33.42 2.69
489 490 9.614792 AACTTTGTTAGACAGTCAAACTATCTT 57.385 29.630 2.66 0.00 33.42 2.40
490 491 9.046296 CAACTTTGTTAGACAGTCAAACTATCT 57.954 33.333 2.66 0.00 35.85 1.98
491 492 8.283291 CCAACTTTGTTAGACAGTCAAACTATC 58.717 37.037 2.66 0.00 0.00 2.08
492 493 7.990886 TCCAACTTTGTTAGACAGTCAAACTAT 59.009 33.333 2.66 0.00 0.00 2.12
493 494 7.332557 TCCAACTTTGTTAGACAGTCAAACTA 58.667 34.615 2.66 0.00 0.00 2.24
494 495 6.177610 TCCAACTTTGTTAGACAGTCAAACT 58.822 36.000 2.66 0.00 0.00 2.66
495 496 6.431198 TCCAACTTTGTTAGACAGTCAAAC 57.569 37.500 2.66 0.00 0.00 2.93
496 497 7.455641 TTTCCAACTTTGTTAGACAGTCAAA 57.544 32.000 2.66 0.00 0.00 2.69
497 498 7.639113 ATTTCCAACTTTGTTAGACAGTCAA 57.361 32.000 2.66 0.00 0.00 3.18
498 499 7.771361 TGTATTTCCAACTTTGTTAGACAGTCA 59.229 33.333 2.66 0.00 0.00 3.41
499 500 8.068380 GTGTATTTCCAACTTTGTTAGACAGTC 58.932 37.037 0.00 0.00 0.00 3.51
500 501 7.773690 AGTGTATTTCCAACTTTGTTAGACAGT 59.226 33.333 0.00 0.00 0.00 3.55
501 502 8.154649 AGTGTATTTCCAACTTTGTTAGACAG 57.845 34.615 0.00 0.00 0.00 3.51
502 503 9.787435 ATAGTGTATTTCCAACTTTGTTAGACA 57.213 29.630 0.00 0.00 0.00 3.41
513 514 9.550811 CGGTCTTTAAAATAGTGTATTTCCAAC 57.449 33.333 0.00 0.00 37.39 3.77
514 515 9.287373 ACGGTCTTTAAAATAGTGTATTTCCAA 57.713 29.630 0.00 0.00 37.39 3.53
515 516 8.723311 CACGGTCTTTAAAATAGTGTATTTCCA 58.277 33.333 0.00 0.00 37.39 3.53
516 517 7.695201 GCACGGTCTTTAAAATAGTGTATTTCC 59.305 37.037 11.66 0.00 37.39 3.13
517 518 7.424452 CGCACGGTCTTTAAAATAGTGTATTTC 59.576 37.037 11.66 0.00 37.39 2.17
518 519 7.095102 ACGCACGGTCTTTAAAATAGTGTATTT 60.095 33.333 11.66 0.00 39.92 1.40
519 520 6.369615 ACGCACGGTCTTTAAAATAGTGTATT 59.630 34.615 11.66 0.00 0.00 1.89
520 521 5.870978 ACGCACGGTCTTTAAAATAGTGTAT 59.129 36.000 11.66 2.33 0.00 2.29
521 522 5.118971 CACGCACGGTCTTTAAAATAGTGTA 59.881 40.000 11.66 0.00 0.00 2.90
522 523 4.060205 ACGCACGGTCTTTAAAATAGTGT 58.940 39.130 11.66 0.00 0.00 3.55
523 524 4.084223 ACACGCACGGTCTTTAAAATAGTG 60.084 41.667 0.00 7.82 0.00 2.74
524 525 4.060205 ACACGCACGGTCTTTAAAATAGT 58.940 39.130 0.00 0.00 0.00 2.12
525 526 4.657075 ACACGCACGGTCTTTAAAATAG 57.343 40.909 0.00 0.00 0.00 1.73
526 527 7.464444 GCTTATACACGCACGGTCTTTAAAATA 60.464 37.037 0.00 0.00 0.00 1.40
527 528 6.673796 GCTTATACACGCACGGTCTTTAAAAT 60.674 38.462 0.00 0.00 0.00 1.82
528 529 5.389725 GCTTATACACGCACGGTCTTTAAAA 60.390 40.000 0.00 0.00 0.00 1.52
529 530 4.091800 GCTTATACACGCACGGTCTTTAAA 59.908 41.667 0.00 0.00 0.00 1.52
530 531 3.613737 GCTTATACACGCACGGTCTTTAA 59.386 43.478 0.00 0.00 0.00 1.52
531 532 3.119388 AGCTTATACACGCACGGTCTTTA 60.119 43.478 0.00 0.00 0.00 1.85
532 533 1.997606 GCTTATACACGCACGGTCTTT 59.002 47.619 0.00 0.00 0.00 2.52
533 534 1.203994 AGCTTATACACGCACGGTCTT 59.796 47.619 0.00 0.00 0.00 3.01
534 535 0.815734 AGCTTATACACGCACGGTCT 59.184 50.000 0.00 0.00 0.00 3.85
535 536 1.323534 CAAGCTTATACACGCACGGTC 59.676 52.381 0.00 0.00 0.00 4.79
536 537 1.337447 ACAAGCTTATACACGCACGGT 60.337 47.619 0.00 0.00 0.00 4.83
537 538 1.060553 CACAAGCTTATACACGCACGG 59.939 52.381 0.00 0.00 0.00 4.94
538 539 1.526986 GCACAAGCTTATACACGCACG 60.527 52.381 0.00 0.00 37.91 5.34
539 540 2.159467 GCACAAGCTTATACACGCAC 57.841 50.000 0.00 0.00 37.91 5.34
557 558 4.770874 TTTAGGTCCGCCCGCAGC 62.771 66.667 0.00 0.00 38.74 5.25
558 559 1.029947 AATTTTAGGTCCGCCCGCAG 61.030 55.000 0.00 0.00 38.74 5.18
559 560 0.609681 AAATTTTAGGTCCGCCCGCA 60.610 50.000 0.00 0.00 38.74 5.69
560 561 0.179148 CAAATTTTAGGTCCGCCCGC 60.179 55.000 0.00 0.00 38.74 6.13
561 562 1.455248 TCAAATTTTAGGTCCGCCCG 58.545 50.000 0.00 0.00 38.74 6.13
562 563 3.020984 TGATCAAATTTTAGGTCCGCCC 58.979 45.455 0.00 0.00 34.57 6.13
563 564 3.181490 GGTGATCAAATTTTAGGTCCGCC 60.181 47.826 0.00 0.00 0.00 6.13
564 565 3.694566 AGGTGATCAAATTTTAGGTCCGC 59.305 43.478 0.00 0.00 0.00 5.54
565 566 6.458342 GCTTAGGTGATCAAATTTTAGGTCCG 60.458 42.308 0.00 0.00 0.00 4.79
566 567 6.183360 GGCTTAGGTGATCAAATTTTAGGTCC 60.183 42.308 0.00 0.00 0.00 4.46
567 568 6.183360 GGGCTTAGGTGATCAAATTTTAGGTC 60.183 42.308 0.00 0.00 0.00 3.85
568 569 5.656859 GGGCTTAGGTGATCAAATTTTAGGT 59.343 40.000 0.00 0.00 0.00 3.08
569 570 5.893824 AGGGCTTAGGTGATCAAATTTTAGG 59.106 40.000 0.00 0.00 0.00 2.69
570 571 6.830838 AGAGGGCTTAGGTGATCAAATTTTAG 59.169 38.462 0.00 0.00 0.00 1.85
571 572 6.731467 AGAGGGCTTAGGTGATCAAATTTTA 58.269 36.000 0.00 0.00 0.00 1.52
572 573 5.583932 AGAGGGCTTAGGTGATCAAATTTT 58.416 37.500 0.00 0.00 0.00 1.82
573 574 5.044550 AGAGAGGGCTTAGGTGATCAAATTT 60.045 40.000 0.00 0.00 0.00 1.82
574 575 4.476479 AGAGAGGGCTTAGGTGATCAAATT 59.524 41.667 0.00 0.00 0.00 1.82
575 576 4.043596 AGAGAGGGCTTAGGTGATCAAAT 58.956 43.478 0.00 0.00 0.00 2.32
576 577 3.452627 GAGAGAGGGCTTAGGTGATCAAA 59.547 47.826 0.00 0.00 0.00 2.69
577 578 3.034635 GAGAGAGGGCTTAGGTGATCAA 58.965 50.000 0.00 0.00 0.00 2.57
578 579 2.246067 AGAGAGAGGGCTTAGGTGATCA 59.754 50.000 0.00 0.00 0.00 2.92
579 580 2.957474 AGAGAGAGGGCTTAGGTGATC 58.043 52.381 0.00 0.00 0.00 2.92
580 581 4.544564 TTAGAGAGAGGGCTTAGGTGAT 57.455 45.455 0.00 0.00 0.00 3.06
581 582 4.332683 TTTAGAGAGAGGGCTTAGGTGA 57.667 45.455 0.00 0.00 0.00 4.02
582 583 5.422214 TTTTTAGAGAGAGGGCTTAGGTG 57.578 43.478 0.00 0.00 0.00 4.00
583 584 7.939376 ATATTTTTAGAGAGAGGGCTTAGGT 57.061 36.000 0.00 0.00 0.00 3.08
587 588 9.176751 AGGATAATATTTTTAGAGAGAGGGCTT 57.823 33.333 0.00 0.00 0.00 4.35
588 589 8.749696 AGGATAATATTTTTAGAGAGAGGGCT 57.250 34.615 0.00 0.00 0.00 5.19
589 590 9.878667 GTAGGATAATATTTTTAGAGAGAGGGC 57.121 37.037 0.00 0.00 0.00 5.19
603 604 8.793592 GGCGGAGAAAATTTGTAGGATAATATT 58.206 33.333 0.00 0.00 0.00 1.28
604 605 7.942341 TGGCGGAGAAAATTTGTAGGATAATAT 59.058 33.333 0.00 0.00 0.00 1.28
605 606 7.284074 TGGCGGAGAAAATTTGTAGGATAATA 58.716 34.615 0.00 0.00 0.00 0.98
606 607 6.126409 TGGCGGAGAAAATTTGTAGGATAAT 58.874 36.000 0.00 0.00 0.00 1.28
607 608 5.502079 TGGCGGAGAAAATTTGTAGGATAA 58.498 37.500 0.00 0.00 0.00 1.75
608 609 5.105567 TGGCGGAGAAAATTTGTAGGATA 57.894 39.130 0.00 0.00 0.00 2.59
609 610 3.963129 TGGCGGAGAAAATTTGTAGGAT 58.037 40.909 0.00 0.00 0.00 3.24
610 611 3.426787 TGGCGGAGAAAATTTGTAGGA 57.573 42.857 0.00 0.00 0.00 2.94
611 612 3.242739 CGATGGCGGAGAAAATTTGTAGG 60.243 47.826 0.00 0.00 0.00 3.18
612 613 3.940303 CGATGGCGGAGAAAATTTGTAG 58.060 45.455 0.00 0.00 0.00 2.74
614 615 2.919666 CGATGGCGGAGAAAATTTGT 57.080 45.000 0.00 0.00 0.00 2.83
626 627 2.579207 TTCTCTACTTTCCGATGGCG 57.421 50.000 0.00 0.00 37.24 5.69
632 633 4.575885 TCATTGGGTTTCTCTACTTTCCG 58.424 43.478 0.00 0.00 0.00 4.30
667 668 3.834489 TGCAAATCATTGGGTGTGTTT 57.166 38.095 0.00 0.00 37.02 2.83
668 669 3.071312 ACATGCAAATCATTGGGTGTGTT 59.929 39.130 0.00 0.00 37.02 3.32
677 678 5.419788 TGCCTAGAAAGACATGCAAATCATT 59.580 36.000 0.00 0.00 31.79 2.57
726 727 1.478510 CCGTGCATAGACTCACCTCTT 59.521 52.381 0.00 0.00 0.00 2.85
727 728 1.107114 CCGTGCATAGACTCACCTCT 58.893 55.000 0.00 0.00 0.00 3.69
728 729 0.818296 ACCGTGCATAGACTCACCTC 59.182 55.000 0.00 0.00 0.00 3.85
729 730 2.025155 CTACCGTGCATAGACTCACCT 58.975 52.381 0.00 0.00 0.00 4.00
731 732 3.992260 ATCTACCGTGCATAGACTCAC 57.008 47.619 0.00 0.00 31.54 3.51
732 733 6.040504 ACAAATATCTACCGTGCATAGACTCA 59.959 38.462 0.00 0.00 31.54 3.41
733 734 6.448006 ACAAATATCTACCGTGCATAGACTC 58.552 40.000 0.00 0.00 31.54 3.36
734 735 6.406692 ACAAATATCTACCGTGCATAGACT 57.593 37.500 0.00 0.00 31.54 3.24
735 736 8.027189 TCATACAAATATCTACCGTGCATAGAC 58.973 37.037 0.00 0.00 31.54 2.59
760 761 5.634020 ACGAGCTTTATTATATTGACCGCTC 59.366 40.000 0.00 0.00 38.31 5.03
765 766 5.106673 GGCCCACGAGCTTTATTATATTGAC 60.107 44.000 0.00 0.00 0.00 3.18
774 775 1.144057 CGAGGCCCACGAGCTTTAT 59.856 57.895 13.61 0.00 0.00 1.40
812 813 5.380043 TGATCCTCTTTCTCTTTGCTTTGT 58.620 37.500 0.00 0.00 0.00 2.83
817 818 3.054802 TCCCTGATCCTCTTTCTCTTTGC 60.055 47.826 0.00 0.00 0.00 3.68
854 856 2.292292 GGAGTGCTTCTAGATCGAGGTC 59.708 54.545 2.78 0.00 0.00 3.85
892 894 1.166129 GCTCGTGTGGAGTAGAGACA 58.834 55.000 0.00 0.00 45.03 3.41
895 897 2.724977 TTTGCTCGTGTGGAGTAGAG 57.275 50.000 0.00 0.00 45.03 2.43
896 898 2.364324 ACTTTTGCTCGTGTGGAGTAGA 59.636 45.455 0.00 0.00 45.03 2.59
1053 1058 1.296715 GAGGTCCACATGCTCGGTT 59.703 57.895 0.00 0.00 0.00 4.44
1149 1154 4.337304 TGCTGGGAGGGCAGGAGA 62.337 66.667 0.00 0.00 34.56 3.71
1186 1191 2.363147 GGCGAGGGACCAGAGACT 60.363 66.667 0.00 0.00 0.00 3.24
1710 1718 4.408821 TGGCATCCTCCGTGCACC 62.409 66.667 12.15 0.00 44.25 5.01
1922 1948 3.536498 GAGTTGGCGTTGGCGTTGG 62.536 63.158 0.00 0.00 41.24 3.77
1923 1949 2.051345 GAGTTGGCGTTGGCGTTG 60.051 61.111 0.00 0.00 41.24 4.10
1924 1950 3.284449 GGAGTTGGCGTTGGCGTT 61.284 61.111 0.00 0.00 41.24 4.84
2087 2113 1.937899 CGTTGTTTCGTTTGGAGGAGT 59.062 47.619 0.00 0.00 0.00 3.85
2103 2129 0.179275 CGATCAACTCGCACACGTTG 60.179 55.000 0.00 0.00 41.14 4.10
2132 2162 2.486203 TGCTTATTACTGCAACCAACCG 59.514 45.455 0.00 0.00 36.15 4.44
2133 2163 3.756434 TCTGCTTATTACTGCAACCAACC 59.244 43.478 0.00 0.00 38.81 3.77
2134 2164 4.672801 GCTCTGCTTATTACTGCAACCAAC 60.673 45.833 0.00 0.00 38.81 3.77
2135 2165 3.440173 GCTCTGCTTATTACTGCAACCAA 59.560 43.478 0.00 0.00 38.81 3.67
2242 2320 3.646637 AGGCTGGTACTGTACTTTGTTCT 59.353 43.478 16.79 5.82 0.00 3.01
2243 2321 4.004196 AGGCTGGTACTGTACTTTGTTC 57.996 45.455 16.79 0.93 0.00 3.18
2331 3044 3.170791 GATCAGGCGATCAGAACAAGA 57.829 47.619 12.36 0.00 46.33 3.02
2377 3090 6.384224 TCAAAACGTATGTAGTCTCGACAAT 58.616 36.000 0.00 0.00 0.00 2.71
2699 3412 5.924254 CAGTCTCGTATTGAAAACACCACTA 59.076 40.000 0.00 0.00 0.00 2.74
2700 3413 4.750098 CAGTCTCGTATTGAAAACACCACT 59.250 41.667 0.00 0.00 0.00 4.00
2728 3441 5.275494 GCTAAGTCTTAATCGACTGAGACC 58.725 45.833 14.28 0.00 42.73 3.85
2740 3453 8.862325 TCATTTGAGATTTGGCTAAGTCTTAA 57.138 30.769 9.19 8.61 33.56 1.85
2744 3457 7.994194 AGATTCATTTGAGATTTGGCTAAGTC 58.006 34.615 0.00 0.00 0.00 3.01
2745 3458 7.067981 GGAGATTCATTTGAGATTTGGCTAAGT 59.932 37.037 0.00 0.00 0.00 2.24
2746 3459 7.067859 TGGAGATTCATTTGAGATTTGGCTAAG 59.932 37.037 0.00 0.00 0.00 2.18
2747 3460 6.891361 TGGAGATTCATTTGAGATTTGGCTAA 59.109 34.615 0.00 0.00 0.00 3.09
2748 3461 6.425735 TGGAGATTCATTTGAGATTTGGCTA 58.574 36.000 0.00 0.00 0.00 3.93
2749 3462 5.266788 TGGAGATTCATTTGAGATTTGGCT 58.733 37.500 0.00 0.00 0.00 4.75
2750 3463 5.587388 TGGAGATTCATTTGAGATTTGGC 57.413 39.130 0.00 0.00 0.00 4.52
2751 3464 5.983720 GCATGGAGATTCATTTGAGATTTGG 59.016 40.000 0.00 0.00 0.00 3.28
2752 3465 6.569780 TGCATGGAGATTCATTTGAGATTTG 58.430 36.000 0.00 0.00 0.00 2.32
2753 3466 6.785337 TGCATGGAGATTCATTTGAGATTT 57.215 33.333 0.00 0.00 0.00 2.17
2754 3467 6.785337 TTGCATGGAGATTCATTTGAGATT 57.215 33.333 0.00 0.00 0.00 2.40
2755 3468 6.785337 TTTGCATGGAGATTCATTTGAGAT 57.215 33.333 0.00 0.00 0.00 2.75
2756 3469 6.593268 TTTTGCATGGAGATTCATTTGAGA 57.407 33.333 0.00 0.00 0.00 3.27
2757 3470 7.039270 TGATTTTGCATGGAGATTCATTTGAG 58.961 34.615 0.00 0.00 0.00 3.02
2758 3471 6.937392 TGATTTTGCATGGAGATTCATTTGA 58.063 32.000 0.00 0.00 0.00 2.69
2759 3472 7.603963 TTGATTTTGCATGGAGATTCATTTG 57.396 32.000 3.72 0.00 0.00 2.32
2760 3473 8.624367 TTTTGATTTTGCATGGAGATTCATTT 57.376 26.923 3.72 0.00 0.00 2.32
2761 3474 8.098286 TCTTTTGATTTTGCATGGAGATTCATT 58.902 29.630 3.72 0.00 0.00 2.57
2762 3475 7.617225 TCTTTTGATTTTGCATGGAGATTCAT 58.383 30.769 3.72 0.00 0.00 2.57
2763 3476 6.995364 TCTTTTGATTTTGCATGGAGATTCA 58.005 32.000 0.00 0.00 0.00 2.57
2764 3477 7.894376 TTCTTTTGATTTTGCATGGAGATTC 57.106 32.000 0.00 0.00 0.00 2.52
2789 3502 9.731819 GAGTTTCGTTATGTCTCAGATGTTATA 57.268 33.333 0.00 0.00 0.00 0.98
2790 3503 8.251026 TGAGTTTCGTTATGTCTCAGATGTTAT 58.749 33.333 0.00 0.00 32.49 1.89
2791 3504 7.599171 TGAGTTTCGTTATGTCTCAGATGTTA 58.401 34.615 0.00 0.00 32.49 2.41
2792 3505 6.455647 TGAGTTTCGTTATGTCTCAGATGTT 58.544 36.000 0.00 0.00 32.49 2.71
2793 3506 6.025749 TGAGTTTCGTTATGTCTCAGATGT 57.974 37.500 0.00 0.00 32.49 3.06
2798 3511 5.862323 GCTAACTGAGTTTCGTTATGTCTCA 59.138 40.000 1.97 0.00 34.62 3.27
2799 3512 5.862323 TGCTAACTGAGTTTCGTTATGTCTC 59.138 40.000 1.97 0.00 0.00 3.36
2800 3513 5.779922 TGCTAACTGAGTTTCGTTATGTCT 58.220 37.500 1.97 0.00 0.00 3.41
2801 3514 6.462073 TTGCTAACTGAGTTTCGTTATGTC 57.538 37.500 1.97 0.00 0.00 3.06
2802 3515 6.854496 TTTGCTAACTGAGTTTCGTTATGT 57.146 33.333 1.97 0.00 0.00 2.29
2803 3516 8.629986 CAATTTTGCTAACTGAGTTTCGTTATG 58.370 33.333 1.97 0.00 0.00 1.90
2804 3517 8.349983 ACAATTTTGCTAACTGAGTTTCGTTAT 58.650 29.630 1.97 0.00 0.00 1.89
2805 3518 7.699566 ACAATTTTGCTAACTGAGTTTCGTTA 58.300 30.769 1.97 0.00 0.00 3.18
2806 3519 6.560711 ACAATTTTGCTAACTGAGTTTCGTT 58.439 32.000 1.97 0.00 0.00 3.85
2807 3520 6.131544 ACAATTTTGCTAACTGAGTTTCGT 57.868 33.333 1.97 0.00 0.00 3.85
2808 3521 6.142320 GGAACAATTTTGCTAACTGAGTTTCG 59.858 38.462 1.97 0.00 0.00 3.46
2809 3522 6.978080 TGGAACAATTTTGCTAACTGAGTTTC 59.022 34.615 1.97 0.00 31.92 2.78
2810 3523 6.872920 TGGAACAATTTTGCTAACTGAGTTT 58.127 32.000 1.97 0.00 31.92 2.66
2811 3524 6.463995 TGGAACAATTTTGCTAACTGAGTT 57.536 33.333 2.37 2.37 31.92 3.01
2823 3536 9.445973 ACCCATGGTATATATTGGAACAATTTT 57.554 29.630 11.73 0.00 37.69 1.82
2824 3537 8.869109 CACCCATGGTATATATTGGAACAATTT 58.131 33.333 11.73 0.00 37.69 1.82
2825 3538 7.454380 CCACCCATGGTATATATTGGAACAATT 59.546 37.037 11.73 0.00 42.58 2.32
2826 3539 6.953520 CCACCCATGGTATATATTGGAACAAT 59.046 38.462 11.73 0.00 42.58 2.71
2827 3540 6.310941 CCACCCATGGTATATATTGGAACAA 58.689 40.000 11.73 0.00 42.58 2.83
2828 3541 5.222233 CCCACCCATGGTATATATTGGAACA 60.222 44.000 11.73 0.00 45.66 3.18
2829 3542 5.222254 ACCCACCCATGGTATATATTGGAAC 60.222 44.000 11.73 0.00 45.66 3.62
2830 3543 4.923236 ACCCACCCATGGTATATATTGGAA 59.077 41.667 11.73 0.00 45.66 3.53
2831 3544 4.290985 CACCCACCCATGGTATATATTGGA 59.709 45.833 11.73 0.00 45.66 3.53
2832 3545 4.569653 CCACCCACCCATGGTATATATTGG 60.570 50.000 11.73 4.45 45.66 3.16
2833 3546 4.569653 CCCACCCACCCATGGTATATATTG 60.570 50.000 11.73 0.00 45.66 1.90
2834 3547 3.596046 CCCACCCACCCATGGTATATATT 59.404 47.826 11.73 0.00 45.66 1.28
2835 3548 3.197983 CCCACCCACCCATGGTATATAT 58.802 50.000 11.73 0.00 45.66 0.86
2836 3549 2.089292 ACCCACCCACCCATGGTATATA 60.089 50.000 11.73 0.00 45.66 0.86
2837 3550 1.347096 ACCCACCCACCCATGGTATAT 60.347 52.381 11.73 0.00 45.66 0.86
2838 3551 0.046552 ACCCACCCACCCATGGTATA 59.953 55.000 11.73 0.00 45.66 1.47
2839 3552 1.230482 ACCCACCCACCCATGGTAT 60.230 57.895 11.73 0.00 45.66 2.73
2840 3553 2.211575 ACCCACCCACCCATGGTA 59.788 61.111 11.73 0.00 45.66 3.25
2841 3554 3.589542 CACCCACCCACCCATGGT 61.590 66.667 11.73 0.00 45.66 3.55
2842 3555 4.380945 CCACCCACCCACCCATGG 62.381 72.222 4.14 4.14 46.81 3.66
2843 3556 4.380945 CCCACCCACCCACCCATG 62.381 72.222 0.00 0.00 0.00 3.66
2847 3560 4.060667 CATCCCCACCCACCCACC 62.061 72.222 0.00 0.00 0.00 4.61
2848 3561 4.060667 CCATCCCCACCCACCCAC 62.061 72.222 0.00 0.00 0.00 4.61
2898 3611 1.908340 CTCAAGGACAGAGCCAGGGG 61.908 65.000 0.00 0.00 0.00 4.79
2899 3612 1.601171 CTCAAGGACAGAGCCAGGG 59.399 63.158 0.00 0.00 0.00 4.45
2974 3687 1.204062 GTTGTGCGGACGACACATG 59.796 57.895 21.32 0.00 46.72 3.21
2980 3693 2.028484 GGAGTGTTGTGCGGACGA 59.972 61.111 1.60 0.00 0.00 4.20
3023 3736 0.902531 TACCACCAGCAGTTCCTAGC 59.097 55.000 0.00 0.00 0.00 3.42
3026 3739 1.625818 CTTCTACCACCAGCAGTTCCT 59.374 52.381 0.00 0.00 0.00 3.36
3030 3743 2.016905 AGTCTTCTACCACCAGCAGT 57.983 50.000 0.00 0.00 0.00 4.40
3031 3744 3.070018 CAAAGTCTTCTACCACCAGCAG 58.930 50.000 0.00 0.00 0.00 4.24
3032 3745 2.703536 TCAAAGTCTTCTACCACCAGCA 59.296 45.455 0.00 0.00 0.00 4.41
3033 3746 3.402628 TCAAAGTCTTCTACCACCAGC 57.597 47.619 0.00 0.00 0.00 4.85
3034 3747 4.508662 GGATCAAAGTCTTCTACCACCAG 58.491 47.826 0.00 0.00 0.00 4.00
3035 3748 3.056107 CGGATCAAAGTCTTCTACCACCA 60.056 47.826 0.00 0.00 0.00 4.17
3036 3749 3.522553 CGGATCAAAGTCTTCTACCACC 58.477 50.000 0.00 0.00 0.00 4.61
3037 3750 3.522553 CCGGATCAAAGTCTTCTACCAC 58.477 50.000 0.00 0.00 0.00 4.16
3038 3751 2.093658 GCCGGATCAAAGTCTTCTACCA 60.094 50.000 5.05 0.00 0.00 3.25
3039 3752 2.093658 TGCCGGATCAAAGTCTTCTACC 60.094 50.000 5.05 0.00 0.00 3.18
3040 3753 3.247006 TGCCGGATCAAAGTCTTCTAC 57.753 47.619 5.05 0.00 0.00 2.59
3041 3754 3.973206 TTGCCGGATCAAAGTCTTCTA 57.027 42.857 5.05 0.00 0.00 2.10
3042 3755 2.859165 TTGCCGGATCAAAGTCTTCT 57.141 45.000 5.05 0.00 0.00 2.85
3043 3756 3.915437 TTTTGCCGGATCAAAGTCTTC 57.085 42.857 5.05 0.00 37.27 2.87
3044 3757 3.243737 GGTTTTTGCCGGATCAAAGTCTT 60.244 43.478 5.05 0.00 37.27 3.01
3045 3758 2.296190 GGTTTTTGCCGGATCAAAGTCT 59.704 45.455 5.05 0.00 37.27 3.24
3046 3759 2.035321 TGGTTTTTGCCGGATCAAAGTC 59.965 45.455 5.05 4.31 37.27 3.01
3047 3760 2.035632 TGGTTTTTGCCGGATCAAAGT 58.964 42.857 5.05 0.00 37.27 2.66
3048 3761 2.810439 TGGTTTTTGCCGGATCAAAG 57.190 45.000 5.05 0.00 37.27 2.77
3049 3762 3.070159 TCAATGGTTTTTGCCGGATCAAA 59.930 39.130 5.05 4.00 34.47 2.69
3050 3763 2.630098 TCAATGGTTTTTGCCGGATCAA 59.370 40.909 5.05 0.00 0.00 2.57
3051 3764 2.242926 TCAATGGTTTTTGCCGGATCA 58.757 42.857 5.05 0.00 0.00 2.92
3052 3765 3.056891 TCTTCAATGGTTTTTGCCGGATC 60.057 43.478 5.05 0.00 0.00 3.36
3053 3766 2.896685 TCTTCAATGGTTTTTGCCGGAT 59.103 40.909 5.05 0.00 0.00 4.18
3054 3767 2.311463 TCTTCAATGGTTTTTGCCGGA 58.689 42.857 5.05 0.00 0.00 5.14
3055 3768 2.810439 TCTTCAATGGTTTTTGCCGG 57.190 45.000 0.00 0.00 0.00 6.13
3056 3769 5.229887 CGATAATCTTCAATGGTTTTTGCCG 59.770 40.000 0.00 0.00 0.00 5.69
3057 3770 6.099341 ACGATAATCTTCAATGGTTTTTGCC 58.901 36.000 0.00 0.00 0.00 4.52
3058 3771 7.581011 AACGATAATCTTCAATGGTTTTTGC 57.419 32.000 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.