Multiple sequence alignment - TraesCS1B01G290500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G290500 chr1B 100.000 3607 0 0 1 3607 507806295 507809901 0.000000e+00 6661
1 TraesCS1B01G290500 chr1A 92.774 1716 83 17 1683 3374 479818675 479820373 0.000000e+00 2444
2 TraesCS1B01G290500 chr1A 84.907 1769 102 62 1 1686 479816953 479818639 0.000000e+00 1635
3 TraesCS1B01G290500 chr1A 92.177 294 21 2 3090 3383 479820568 479820859 7.210000e-112 414
4 TraesCS1B01G290500 chr1D 93.478 1656 69 15 1842 3491 379131861 379133483 0.000000e+00 2423
5 TraesCS1B01G290500 chr1D 93.372 513 25 5 1180 1686 379131153 379131662 0.000000e+00 750
6 TraesCS1B01G290500 chr1D 92.141 509 23 7 647 1143 379130643 379131146 0.000000e+00 702
7 TraesCS1B01G290500 chr1D 87.705 366 24 14 290 641 379129199 379129557 1.210000e-109 407
8 TraesCS1B01G290500 chr1D 85.870 276 18 9 1 262 379128940 379129208 1.280000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G290500 chr1B 507806295 507809901 3606 False 6661.000000 6661 100.000000 1 3607 1 chr1B.!!$F1 3606
1 TraesCS1B01G290500 chr1A 479816953 479820859 3906 False 1497.666667 2444 89.952667 1 3383 3 chr1A.!!$F1 3382
2 TraesCS1B01G290500 chr1D 379128940 379133483 4543 False 911.200000 2423 90.513200 1 3491 5 chr1D.!!$F1 3490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 553 0.032678 CTCGACAGTCCACACAGCTT 59.967 55.0 0.0 0.0 0.00 3.74 F
604 654 0.580104 GCACAGCAAAGCAAAGCAAG 59.420 50.0 0.0 0.0 0.00 4.01 F
1272 2461 0.676466 TTTGCAGCGTCATACTGGGG 60.676 55.0 0.0 0.0 35.62 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 3158 0.957888 GCTTCTCTCGGCAAGCCTTT 60.958 55.0 9.73 0.0 39.36 3.11 R
2288 3562 1.156736 GCATACATACGGCCACATCC 58.843 55.0 2.24 0.0 0.00 3.51 R
3228 4988 0.249868 TGACTCCAACTTCAGTGCGG 60.250 55.0 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 101 1.007849 GGGCAACGCGAACACAAAT 60.008 52.632 15.93 0.00 37.60 2.32
154 162 4.981806 AATCGTGGAGAAGAGAAGAGAG 57.018 45.455 0.00 0.00 0.00 3.20
155 163 2.717390 TCGTGGAGAAGAGAAGAGAGG 58.283 52.381 0.00 0.00 0.00 3.69
215 241 2.524569 CCAAATCTTTTGGGCGTTGT 57.475 45.000 10.53 0.00 35.96 3.32
261 287 2.945066 GACGTCGCTCGCTGTAGC 60.945 66.667 0.00 0.00 44.19 3.58
262 288 3.662623 GACGTCGCTCGCTGTAGCA 62.663 63.158 0.00 0.00 42.91 3.49
296 328 2.101209 AAAACGGAAGCGTCGCTGTG 62.101 55.000 22.50 15.61 39.62 3.66
380 416 5.104527 ACGAGATGAAAGATGGGGTGATAAA 60.105 40.000 0.00 0.00 0.00 1.40
420 456 1.702491 GCGTTCATGGCCGTACTTCC 61.702 60.000 0.00 0.00 0.00 3.46
435 475 3.846405 TTCCCTCTCGGTGGCCTGT 62.846 63.158 3.32 0.00 0.00 4.00
456 496 0.248661 CTGCAGCTGATACGCTACGT 60.249 55.000 20.43 0.00 44.35 3.57
457 497 1.002792 CTGCAGCTGATACGCTACGTA 60.003 52.381 20.43 1.95 46.28 3.57
458 498 1.268386 TGCAGCTGATACGCTACGTAC 60.268 52.381 20.43 0.00 45.07 3.67
459 499 1.002684 GCAGCTGATACGCTACGTACT 60.003 52.381 20.43 0.00 45.07 2.73
460 500 2.222678 GCAGCTGATACGCTACGTACTA 59.777 50.000 20.43 0.00 45.07 1.82
461 501 3.664798 GCAGCTGATACGCTACGTACTAG 60.665 52.174 20.43 5.28 45.07 2.57
462 502 3.493877 CAGCTGATACGCTACGTACTAGT 59.506 47.826 8.42 0.00 45.07 2.57
463 503 4.683320 CAGCTGATACGCTACGTACTAGTA 59.317 45.833 8.42 0.00 45.07 1.82
505 553 0.032678 CTCGACAGTCCACACAGCTT 59.967 55.000 0.00 0.00 0.00 3.74
525 573 4.290622 CCCAAGTGCTGGCCCAGT 62.291 66.667 13.35 0.00 44.90 4.00
530 578 4.052518 GTGCTGGCCCAGTCCCAT 62.053 66.667 13.35 0.00 33.43 4.00
551 601 5.064707 CCATCGACTGTATACCAAACCAAAG 59.935 44.000 0.00 0.00 0.00 2.77
598 648 0.810823 GCCAAAGCACAGCAAAGCAA 60.811 50.000 0.00 0.00 39.53 3.91
604 654 0.580104 GCACAGCAAAGCAAAGCAAG 59.420 50.000 0.00 0.00 0.00 4.01
608 658 1.666700 CAGCAAAGCAAAGCAAGCAAA 59.333 42.857 0.00 0.00 0.00 3.68
679 1847 5.491982 GAGCAACAGAGGGAGAATAAAAGA 58.508 41.667 0.00 0.00 0.00 2.52
772 1943 1.621992 GTCGCATCTATCCTCCTCCA 58.378 55.000 0.00 0.00 0.00 3.86
773 1944 1.964223 GTCGCATCTATCCTCCTCCAA 59.036 52.381 0.00 0.00 0.00 3.53
776 1947 1.964223 GCATCTATCCTCCTCCAACGA 59.036 52.381 0.00 0.00 0.00 3.85
777 1948 2.564947 GCATCTATCCTCCTCCAACGAT 59.435 50.000 0.00 0.00 0.00 3.73
778 1949 3.764434 GCATCTATCCTCCTCCAACGATA 59.236 47.826 0.00 0.00 0.00 2.92
780 1951 5.594725 GCATCTATCCTCCTCCAACGATATA 59.405 44.000 0.00 0.00 0.00 0.86
811 1997 4.736631 GCTTCGGTCGCGCCAAAC 62.737 66.667 17.57 3.89 36.97 2.93
838 2024 2.866156 CGCCCAATATACATATGCGGAG 59.134 50.000 1.58 0.00 37.12 4.63
849 2035 3.133901 ACATATGCGGAGTATTGGTCACA 59.866 43.478 1.58 0.00 32.95 3.58
850 2036 2.315925 ATGCGGAGTATTGGTCACAG 57.684 50.000 0.00 0.00 0.00 3.66
854 2043 2.799917 GCGGAGTATTGGTCACAGCTAG 60.800 54.545 0.00 0.00 0.00 3.42
887 2076 1.515954 GGCGTCCCGATCTCTTTCA 59.484 57.895 0.00 0.00 0.00 2.69
907 2096 4.159108 CGCCTACCTCCCCTCCCT 62.159 72.222 0.00 0.00 0.00 4.20
1133 2322 2.180276 GTCAGTCAGCTTCCTTCCCTA 58.820 52.381 0.00 0.00 0.00 3.53
1137 2326 3.454082 CAGTCAGCTTCCTTCCCTATTCT 59.546 47.826 0.00 0.00 0.00 2.40
1147 2336 7.575499 TTCCTTCCCTATTCTCTTCTCTTTT 57.425 36.000 0.00 0.00 0.00 2.27
1150 2339 6.351456 CCTTCCCTATTCTCTTCTCTTTTCGT 60.351 42.308 0.00 0.00 0.00 3.85
1155 2344 6.975772 CCTATTCTCTTCTCTTTTCGTCGATT 59.024 38.462 0.00 0.00 0.00 3.34
1161 2350 2.993899 TCTCTTTTCGTCGATTTGGAGC 59.006 45.455 0.00 0.00 0.00 4.70
1163 2352 3.399330 TCTTTTCGTCGATTTGGAGCTT 58.601 40.909 0.00 0.00 0.00 3.74
1164 2353 3.186409 TCTTTTCGTCGATTTGGAGCTTG 59.814 43.478 0.00 0.00 0.00 4.01
1165 2354 2.163818 TTCGTCGATTTGGAGCTTGT 57.836 45.000 0.00 0.00 0.00 3.16
1166 2355 2.163818 TCGTCGATTTGGAGCTTGTT 57.836 45.000 0.00 0.00 0.00 2.83
1167 2356 2.066262 TCGTCGATTTGGAGCTTGTTC 58.934 47.619 0.00 0.00 0.00 3.18
1168 2357 1.201812 CGTCGATTTGGAGCTTGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
1169 2358 1.128692 GTCGATTTGGAGCTTGTTCGG 59.871 52.381 0.00 0.00 0.00 4.30
1170 2359 1.001520 TCGATTTGGAGCTTGTTCGGA 59.998 47.619 0.00 0.00 0.00 4.55
1171 2360 1.394917 CGATTTGGAGCTTGTTCGGAG 59.605 52.381 0.00 0.00 0.00 4.63
1172 2361 2.699954 GATTTGGAGCTTGTTCGGAGA 58.300 47.619 0.00 0.00 0.00 3.71
1173 2362 2.631160 TTTGGAGCTTGTTCGGAGAA 57.369 45.000 0.00 0.00 45.90 2.87
1174 2363 2.631160 TTGGAGCTTGTTCGGAGAAA 57.369 45.000 0.00 0.00 45.90 2.52
1175 2364 2.169832 TGGAGCTTGTTCGGAGAAAG 57.830 50.000 0.00 0.00 45.90 2.62
1253 2442 2.489329 CGGCTGGATGATGAACTTTTGT 59.511 45.455 0.00 0.00 0.00 2.83
1272 2461 0.676466 TTTGCAGCGTCATACTGGGG 60.676 55.000 0.00 0.00 35.62 4.96
1343 2532 0.822164 GGCGCCAAGAAGAGGTACTA 59.178 55.000 24.80 0.00 41.55 1.82
1344 2533 1.471153 GGCGCCAAGAAGAGGTACTAC 60.471 57.143 24.80 0.00 41.55 2.73
1345 2534 1.477295 GCGCCAAGAAGAGGTACTACT 59.523 52.381 0.00 0.00 41.55 2.57
1346 2535 2.686915 GCGCCAAGAAGAGGTACTACTA 59.313 50.000 0.00 0.00 41.55 1.82
1446 2635 3.287867 TCATTTGGGCCTCTCTGATTC 57.712 47.619 4.53 0.00 0.00 2.52
1468 2657 9.591404 GATTCGATTGATTGATGAGAAACATAC 57.409 33.333 0.00 0.00 39.56 2.39
1483 2672 4.451629 AACATACGAGTGGTAGTTGAGG 57.548 45.455 0.00 0.00 33.84 3.86
1513 2703 2.269241 GTCTTTCCGGCCCCTCTG 59.731 66.667 0.00 0.00 0.00 3.35
1514 2704 2.203938 TCTTTCCGGCCCCTCTGT 60.204 61.111 0.00 0.00 0.00 3.41
1536 2731 0.755327 AGTGGCCACCAAACTTGACC 60.755 55.000 32.29 2.46 34.18 4.02
1540 2735 1.826054 CCACCAAACTTGACCCGCA 60.826 57.895 0.00 0.00 0.00 5.69
1612 2811 8.900781 CAGACAATTTTGAGTCCAATAGATCAT 58.099 33.333 0.00 0.00 35.38 2.45
1641 2840 6.540189 ACAGCTAGATAAATTACACAAGGCTG 59.460 38.462 0.00 0.00 44.93 4.85
1719 2961 1.338105 TGTCTTCACAGCCTGGATTCG 60.338 52.381 0.00 0.00 0.00 3.34
1727 2969 1.527370 GCCTGGATTCGGCCTAACT 59.473 57.895 0.00 0.00 41.73 2.24
1770 3012 5.407387 TCACGGTTACTGAAAACATCTTAGC 59.593 40.000 0.00 0.00 0.00 3.09
1784 3026 4.572389 ACATCTTAGCCAATGATGACGAAC 59.428 41.667 15.42 0.00 39.72 3.95
1825 3068 8.116753 GTCATACAGATCACAATTTTAAGACCG 58.883 37.037 0.00 0.00 0.00 4.79
1826 3069 5.880054 ACAGATCACAATTTTAAGACCGG 57.120 39.130 0.00 0.00 0.00 5.28
1838 3081 2.320745 AAGACCGGAGTTTGACGTTT 57.679 45.000 9.46 0.00 0.00 3.60
2182 3455 1.681666 CCAGAAGCTCAAGGCCTCA 59.318 57.895 5.23 0.00 43.05 3.86
2258 3531 2.426024 GCACTCTGCACCATTCATTCAT 59.574 45.455 0.00 0.00 44.26 2.57
2288 3562 3.278668 AAGCTCAGGATCTCATGGTTG 57.721 47.619 0.00 0.00 0.00 3.77
2297 3571 0.034186 TCTCATGGTTGGATGTGGCC 60.034 55.000 0.00 0.00 0.00 5.36
2653 3927 1.848932 CGGCGATCGTCGGAGGATAA 61.849 60.000 32.92 0.00 40.84 1.75
2692 3966 1.464608 TCGTACCGTAGAAGTTGACCG 59.535 52.381 0.00 0.00 0.00 4.79
2743 4018 3.194861 GCTGATGATTGTGTAGCGGTTA 58.805 45.455 0.00 0.00 0.00 2.85
2838 4113 5.757886 GAGCAGTCTATGTAACAGCTCTAG 58.242 45.833 11.83 0.00 46.66 2.43
2924 4209 2.655090 TTGTGTCCTGCTTTGGATGA 57.345 45.000 0.00 0.00 38.52 2.92
2986 4273 8.679288 AGAAAACAAAATGATAATCGAGCTTG 57.321 30.769 0.00 0.00 0.00 4.01
2989 4276 6.741992 ACAAAATGATAATCGAGCTTGACA 57.258 33.333 5.59 0.00 0.00 3.58
3135 4894 4.900684 TCGACCATTTGTATGTTCCTCAA 58.099 39.130 0.00 0.00 0.00 3.02
3149 4908 9.383519 GTATGTTCCTCAATGTTTCTTCTATCA 57.616 33.333 0.00 0.00 0.00 2.15
3220 4980 1.749258 GTGGTCGGGGATTCCTTGC 60.749 63.158 2.01 0.00 0.00 4.01
3228 4988 1.546548 GGGGATTCCTTGCTGGCTATC 60.547 57.143 2.01 0.00 35.26 2.08
3256 5016 0.753262 AGTTGGAGTCACTTGCTCGT 59.247 50.000 0.00 0.00 34.00 4.18
3270 5030 1.344438 TGCTCGTGGAGAAGTGACAAT 59.656 47.619 0.00 0.00 0.00 2.71
3310 5070 1.339631 CCTTGGCGGTGTTTCTATCCA 60.340 52.381 0.00 0.00 0.00 3.41
3315 5075 1.942586 GCGGTGTTTCTATCCACGGTT 60.943 52.381 0.00 0.00 35.19 4.44
3336 5096 1.003118 GCATGTGTGGGTCTTGTAGGA 59.997 52.381 0.00 0.00 0.00 2.94
3377 5137 1.289109 CCTTTGTGGGCGTGTCGTAG 61.289 60.000 0.00 0.00 0.00 3.51
3421 5181 8.204836 TCTGTAATTAGCCAGGTAATTCTCTTC 58.795 37.037 15.91 6.39 34.93 2.87
3433 5193 4.647564 AATTCTCTTCTGAGCCCTTTGA 57.352 40.909 0.00 0.00 40.03 2.69
3442 5202 2.551459 CTGAGCCCTTTGAACTTCTGTG 59.449 50.000 0.00 0.00 0.00 3.66
3491 5251 7.288672 GTTCAAGTTCAAGTAACAATCGGTAG 58.711 38.462 0.00 0.00 40.83 3.18
3492 5252 6.751157 TCAAGTTCAAGTAACAATCGGTAGA 58.249 36.000 0.00 0.00 40.83 2.59
3493 5253 7.383687 TCAAGTTCAAGTAACAATCGGTAGAT 58.616 34.615 0.00 0.00 40.83 1.98
3494 5254 8.525316 TCAAGTTCAAGTAACAATCGGTAGATA 58.475 33.333 0.00 0.00 40.83 1.98
3495 5255 8.808529 CAAGTTCAAGTAACAATCGGTAGATAG 58.191 37.037 0.00 0.00 40.83 2.08
3496 5256 8.064336 AGTTCAAGTAACAATCGGTAGATAGT 57.936 34.615 0.00 0.00 40.83 2.12
3497 5257 8.529476 AGTTCAAGTAACAATCGGTAGATAGTT 58.471 33.333 0.00 0.00 40.83 2.24
3498 5258 9.793252 GTTCAAGTAACAATCGGTAGATAGTTA 57.207 33.333 0.00 0.00 38.05 2.24
3499 5259 9.793252 TTCAAGTAACAATCGGTAGATAGTTAC 57.207 33.333 0.00 0.00 40.73 2.50
3500 5260 8.959548 TCAAGTAACAATCGGTAGATAGTTACA 58.040 33.333 13.59 0.00 42.07 2.41
3501 5261 9.234384 CAAGTAACAATCGGTAGATAGTTACAG 57.766 37.037 13.59 4.49 42.07 2.74
3502 5262 7.938715 AGTAACAATCGGTAGATAGTTACAGG 58.061 38.462 13.59 0.00 42.07 4.00
3503 5263 6.786967 AACAATCGGTAGATAGTTACAGGT 57.213 37.500 0.00 0.00 35.74 4.00
3504 5264 6.786967 ACAATCGGTAGATAGTTACAGGTT 57.213 37.500 0.00 0.00 35.74 3.50
3505 5265 6.803642 ACAATCGGTAGATAGTTACAGGTTC 58.196 40.000 0.00 0.00 35.74 3.62
3506 5266 6.379133 ACAATCGGTAGATAGTTACAGGTTCA 59.621 38.462 0.00 0.00 35.74 3.18
3507 5267 7.069578 ACAATCGGTAGATAGTTACAGGTTCAT 59.930 37.037 0.00 0.00 35.74 2.57
3508 5268 6.387041 TCGGTAGATAGTTACAGGTTCATG 57.613 41.667 0.00 0.00 0.00 3.07
3509 5269 5.301045 TCGGTAGATAGTTACAGGTTCATGG 59.699 44.000 0.00 0.00 0.00 3.66
3510 5270 5.068723 CGGTAGATAGTTACAGGTTCATGGT 59.931 44.000 0.00 0.00 0.00 3.55
3511 5271 6.406624 CGGTAGATAGTTACAGGTTCATGGTT 60.407 42.308 0.00 0.00 0.00 3.67
3512 5272 7.336396 GGTAGATAGTTACAGGTTCATGGTTT 58.664 38.462 0.00 0.00 0.00 3.27
3513 5273 7.494952 GGTAGATAGTTACAGGTTCATGGTTTC 59.505 40.741 0.00 0.00 0.00 2.78
3514 5274 7.016153 AGATAGTTACAGGTTCATGGTTTCA 57.984 36.000 0.00 0.00 0.00 2.69
3515 5275 6.879458 AGATAGTTACAGGTTCATGGTTTCAC 59.121 38.462 0.00 0.00 0.00 3.18
3516 5276 4.142038 AGTTACAGGTTCATGGTTTCACC 58.858 43.478 0.00 0.00 39.22 4.02
3531 5291 7.759489 TGGTTTCACCATATAAAGATATGCC 57.241 36.000 0.00 0.00 44.79 4.40
3532 5292 7.293828 TGGTTTCACCATATAAAGATATGCCA 58.706 34.615 0.00 0.00 44.79 4.92
3533 5293 7.782168 TGGTTTCACCATATAAAGATATGCCAA 59.218 33.333 0.00 0.00 44.79 4.52
3534 5294 8.637986 GGTTTCACCATATAAAGATATGCCAAA 58.362 33.333 0.27 0.00 42.52 3.28
3537 5297 9.639563 TTCACCATATAAAGATATGCCAAAAGA 57.360 29.630 0.27 0.00 42.52 2.52
3538 5298 9.288576 TCACCATATAAAGATATGCCAAAAGAG 57.711 33.333 0.27 0.00 42.52 2.85
3539 5299 9.288576 CACCATATAAAGATATGCCAAAAGAGA 57.711 33.333 0.27 0.00 42.52 3.10
3540 5300 9.289782 ACCATATAAAGATATGCCAAAAGAGAC 57.710 33.333 0.27 0.00 42.52 3.36
3541 5301 9.512588 CCATATAAAGATATGCCAAAAGAGACT 57.487 33.333 0.27 0.00 42.52 3.24
3543 5303 5.573337 AAAGATATGCCAAAAGAGACTGC 57.427 39.130 0.00 0.00 0.00 4.40
3544 5304 3.549794 AGATATGCCAAAAGAGACTGCC 58.450 45.455 0.00 0.00 0.00 4.85
3545 5305 1.737838 TATGCCAAAAGAGACTGCCG 58.262 50.000 0.00 0.00 0.00 5.69
3546 5306 1.589716 ATGCCAAAAGAGACTGCCGC 61.590 55.000 0.00 0.00 0.00 6.53
3547 5307 1.968540 GCCAAAAGAGACTGCCGCT 60.969 57.895 0.00 0.00 0.00 5.52
3548 5308 1.916697 GCCAAAAGAGACTGCCGCTC 61.917 60.000 0.00 0.00 0.00 5.03
3549 5309 0.603707 CCAAAAGAGACTGCCGCTCA 60.604 55.000 0.00 0.00 34.85 4.26
3550 5310 1.229428 CAAAAGAGACTGCCGCTCAA 58.771 50.000 0.00 0.00 34.85 3.02
3551 5311 1.603802 CAAAAGAGACTGCCGCTCAAA 59.396 47.619 0.00 0.00 34.85 2.69
3552 5312 1.517242 AAAGAGACTGCCGCTCAAAG 58.483 50.000 0.00 0.00 34.85 2.77
3553 5313 0.394565 AAGAGACTGCCGCTCAAAGT 59.605 50.000 0.00 0.00 34.85 2.66
3554 5314 0.037790 AGAGACTGCCGCTCAAAGTC 60.038 55.000 1.25 1.25 40.53 3.01
3555 5315 2.053618 AGACTGCCGCTCAAAGTCT 58.946 52.632 5.49 5.49 44.51 3.24
3556 5316 1.257743 AGACTGCCGCTCAAAGTCTA 58.742 50.000 8.87 0.00 46.77 2.59
3557 5317 1.067495 AGACTGCCGCTCAAAGTCTAC 60.067 52.381 8.87 0.00 46.77 2.59
3558 5318 0.969894 ACTGCCGCTCAAAGTCTACT 59.030 50.000 0.00 0.00 0.00 2.57
3559 5319 1.067495 ACTGCCGCTCAAAGTCTACTC 60.067 52.381 0.00 0.00 0.00 2.59
3560 5320 0.246635 TGCCGCTCAAAGTCTACTCC 59.753 55.000 0.00 0.00 0.00 3.85
3561 5321 0.802607 GCCGCTCAAAGTCTACTCCG 60.803 60.000 0.00 0.00 0.00 4.63
3562 5322 0.802607 CCGCTCAAAGTCTACTCCGC 60.803 60.000 0.00 0.00 0.00 5.54
3563 5323 1.134530 CGCTCAAAGTCTACTCCGCG 61.135 60.000 0.00 0.00 0.00 6.46
3564 5324 1.414527 GCTCAAAGTCTACTCCGCGC 61.415 60.000 0.00 0.00 0.00 6.86
3565 5325 0.802607 CTCAAAGTCTACTCCGCGCC 60.803 60.000 0.00 0.00 0.00 6.53
3566 5326 1.080093 CAAAGTCTACTCCGCGCCA 60.080 57.895 0.00 0.00 0.00 5.69
3567 5327 1.080025 AAAGTCTACTCCGCGCCAC 60.080 57.895 0.00 0.00 0.00 5.01
3568 5328 2.502692 AAAGTCTACTCCGCGCCACC 62.503 60.000 0.00 0.00 0.00 4.61
3569 5329 4.849329 GTCTACTCCGCGCCACCG 62.849 72.222 0.00 0.00 37.57 4.94
3586 5346 4.079961 GCCTTGGCCCCCTTCCAT 62.080 66.667 0.00 0.00 32.92 3.41
3587 5347 2.779981 CCTTGGCCCCCTTCCATT 59.220 61.111 0.00 0.00 32.92 3.16
3588 5348 1.381735 CCTTGGCCCCCTTCCATTC 60.382 63.158 0.00 0.00 32.92 2.67
3589 5349 1.699752 CTTGGCCCCCTTCCATTCT 59.300 57.895 0.00 0.00 32.92 2.40
3590 5350 0.396278 CTTGGCCCCCTTCCATTCTC 60.396 60.000 0.00 0.00 32.92 2.87
3591 5351 1.874299 TTGGCCCCCTTCCATTCTCC 61.874 60.000 0.00 0.00 32.92 3.71
3592 5352 2.603580 GCCCCCTTCCATTCTCCC 59.396 66.667 0.00 0.00 0.00 4.30
3593 5353 2.316586 GCCCCCTTCCATTCTCCCA 61.317 63.158 0.00 0.00 0.00 4.37
3594 5354 1.659035 GCCCCCTTCCATTCTCCCAT 61.659 60.000 0.00 0.00 0.00 4.00
3595 5355 0.480252 CCCCCTTCCATTCTCCCATC 59.520 60.000 0.00 0.00 0.00 3.51
3596 5356 1.527457 CCCCTTCCATTCTCCCATCT 58.473 55.000 0.00 0.00 0.00 2.90
3597 5357 1.423161 CCCCTTCCATTCTCCCATCTC 59.577 57.143 0.00 0.00 0.00 2.75
3598 5358 1.071385 CCCTTCCATTCTCCCATCTCG 59.929 57.143 0.00 0.00 0.00 4.04
3599 5359 1.542108 CCTTCCATTCTCCCATCTCGC 60.542 57.143 0.00 0.00 0.00 5.03
3600 5360 0.104855 TTCCATTCTCCCATCTCGCG 59.895 55.000 0.00 0.00 0.00 5.87
3601 5361 1.301244 CCATTCTCCCATCTCGCGG 60.301 63.158 6.13 0.00 0.00 6.46
3602 5362 1.958205 CATTCTCCCATCTCGCGGC 60.958 63.158 6.13 0.00 0.00 6.53
3603 5363 3.170490 ATTCTCCCATCTCGCGGCC 62.170 63.158 6.13 0.00 0.00 6.13
3604 5364 4.841617 TCTCCCATCTCGCGGCCT 62.842 66.667 6.13 0.00 0.00 5.19
3605 5365 3.854669 CTCCCATCTCGCGGCCTT 61.855 66.667 6.13 0.00 0.00 4.35
3606 5366 4.161295 TCCCATCTCGCGGCCTTG 62.161 66.667 6.13 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 96 3.037549 TCCCTTTTCCAGTTGCATTTGT 58.962 40.909 0.00 0.00 0.00 2.83
93 101 2.978156 ATCTCCCTTTTCCAGTTGCA 57.022 45.000 0.00 0.00 0.00 4.08
215 241 1.305201 AAACGAAAAGCAGCGGAGAA 58.695 45.000 0.00 0.00 0.00 2.87
247 273 0.721718 AAAATGCTACAGCGAGCGAC 59.278 50.000 0.00 0.00 45.99 5.19
248 274 1.438651 AAAAATGCTACAGCGAGCGA 58.561 45.000 0.00 0.00 45.99 4.93
249 275 3.975992 AAAAATGCTACAGCGAGCG 57.024 47.368 0.00 0.00 45.99 5.03
296 328 1.692519 ACATATACCCTTGGTCGAGCC 59.307 52.381 12.85 4.60 37.09 4.70
361 397 5.532406 CACGATTTATCACCCCATCTTTCAT 59.468 40.000 0.00 0.00 0.00 2.57
362 398 4.881273 CACGATTTATCACCCCATCTTTCA 59.119 41.667 0.00 0.00 0.00 2.69
380 416 4.796231 GCGGCCACGTCTCACGAT 62.796 66.667 2.24 0.00 46.05 3.73
525 573 3.133362 GGTTTGGTATACAGTCGATGGGA 59.867 47.826 5.01 0.00 0.00 4.37
530 578 3.998341 GCTTTGGTTTGGTATACAGTCGA 59.002 43.478 5.01 0.00 0.00 4.20
551 601 2.559440 TGATTTGTTTTTGCTGGGTGC 58.441 42.857 0.00 0.00 43.25 5.01
588 638 1.292061 TTGCTTGCTTTGCTTTGCTG 58.708 45.000 0.00 0.00 0.00 4.41
590 640 1.397692 TGTTTGCTTGCTTTGCTTTGC 59.602 42.857 0.00 0.00 0.00 3.68
598 648 6.128200 CCTTTTCTTTCTTTGTTTGCTTGCTT 60.128 34.615 0.00 0.00 0.00 3.91
604 654 5.233050 GCTCTCCTTTTCTTTCTTTGTTTGC 59.767 40.000 0.00 0.00 0.00 3.68
608 658 3.565902 CCGCTCTCCTTTTCTTTCTTTGT 59.434 43.478 0.00 0.00 0.00 2.83
772 1943 1.931172 GCACGCAACTGGTATATCGTT 59.069 47.619 0.00 0.00 0.00 3.85
773 1944 1.136305 AGCACGCAACTGGTATATCGT 59.864 47.619 0.00 0.00 0.00 3.73
776 1947 1.134401 AGCAGCACGCAACTGGTATAT 60.134 47.619 0.00 0.00 43.67 0.86
777 1948 0.249120 AGCAGCACGCAACTGGTATA 59.751 50.000 0.00 0.00 43.67 1.47
778 1949 0.606401 AAGCAGCACGCAACTGGTAT 60.606 50.000 5.24 0.00 44.67 2.73
811 1997 0.955428 ATGTATATTGGGCGCTGGCG 60.955 55.000 7.64 10.80 41.24 5.69
838 2024 4.159879 ACCAGTACTAGCTGTGACCAATAC 59.840 45.833 0.00 0.00 34.84 1.89
849 2035 1.553704 CGGGGAAAACCAGTACTAGCT 59.446 52.381 0.00 0.00 42.91 3.32
850 2036 1.406477 CCGGGGAAAACCAGTACTAGC 60.406 57.143 0.00 0.00 42.91 3.42
854 2043 2.036571 CGCCGGGGAAAACCAGTAC 61.037 63.158 14.46 0.00 42.91 2.73
887 2076 4.477119 GAGGGGAGGTAGGCGGGT 62.477 72.222 0.00 0.00 0.00 5.28
935 2124 0.735471 GGCAGATCTTTCCGGCTTTC 59.265 55.000 0.00 0.00 0.00 2.62
937 2126 1.077429 GGGCAGATCTTTCCGGCTT 60.077 57.895 0.00 0.00 0.00 4.35
939 2128 2.517166 GGGGCAGATCTTTCCGGC 60.517 66.667 0.00 0.00 0.00 6.13
992 2181 3.126879 CGCAGCTCATGGCCGAAA 61.127 61.111 0.00 0.00 43.05 3.46
1110 2299 1.349357 GGAAGGAAGCTGACTGACCTT 59.651 52.381 0.00 0.00 42.44 3.50
1133 2322 6.091441 CCAAATCGACGAAAAGAGAAGAGAAT 59.909 38.462 0.00 0.00 0.00 2.40
1137 2326 4.878439 TCCAAATCGACGAAAAGAGAAGA 58.122 39.130 0.00 0.00 0.00 2.87
1147 2336 2.066262 GAACAAGCTCCAAATCGACGA 58.934 47.619 0.00 0.00 0.00 4.20
1150 2339 1.001520 TCCGAACAAGCTCCAAATCGA 59.998 47.619 8.37 0.00 32.38 3.59
1155 2344 2.494059 CTTTCTCCGAACAAGCTCCAA 58.506 47.619 0.00 0.00 0.00 3.53
1161 2350 1.470098 CCCATGCTTTCTCCGAACAAG 59.530 52.381 0.00 0.00 0.00 3.16
1163 2352 0.690192 TCCCATGCTTTCTCCGAACA 59.310 50.000 0.00 0.00 0.00 3.18
1164 2353 2.044123 ATCCCATGCTTTCTCCGAAC 57.956 50.000 0.00 0.00 0.00 3.95
1165 2354 2.239654 AGAATCCCATGCTTTCTCCGAA 59.760 45.455 0.00 0.00 0.00 4.30
1166 2355 1.839994 AGAATCCCATGCTTTCTCCGA 59.160 47.619 0.00 0.00 0.00 4.55
1167 2356 2.338577 AGAATCCCATGCTTTCTCCG 57.661 50.000 0.00 0.00 0.00 4.63
1168 2357 3.624777 TCAAGAATCCCATGCTTTCTCC 58.375 45.455 4.21 0.00 0.00 3.71
1169 2358 4.037684 CCATCAAGAATCCCATGCTTTCTC 59.962 45.833 4.21 0.00 0.00 2.87
1170 2359 3.958798 CCATCAAGAATCCCATGCTTTCT 59.041 43.478 0.00 0.00 0.00 2.52
1171 2360 3.703052 ACCATCAAGAATCCCATGCTTTC 59.297 43.478 0.00 0.00 0.00 2.62
1172 2361 3.449737 CACCATCAAGAATCCCATGCTTT 59.550 43.478 0.00 0.00 0.00 3.51
1173 2362 3.028850 CACCATCAAGAATCCCATGCTT 58.971 45.455 0.00 0.00 0.00 3.91
1174 2363 2.662866 CACCATCAAGAATCCCATGCT 58.337 47.619 0.00 0.00 0.00 3.79
1175 2364 1.684983 CCACCATCAAGAATCCCATGC 59.315 52.381 0.00 0.00 0.00 4.06
1176 2365 2.313317 CCCACCATCAAGAATCCCATG 58.687 52.381 0.00 0.00 0.00 3.66
1177 2366 1.412074 GCCCACCATCAAGAATCCCAT 60.412 52.381 0.00 0.00 0.00 4.00
1178 2367 0.033208 GCCCACCATCAAGAATCCCA 60.033 55.000 0.00 0.00 0.00 4.37
1253 2442 0.676466 CCCCAGTATGACGCTGCAAA 60.676 55.000 0.00 0.00 39.69 3.68
1272 2461 1.144936 CCTCCTGGGAGCATCGAAC 59.855 63.158 10.92 0.00 40.69 3.95
1343 2532 8.017418 AGAGCAGAAGAACATTATTAGCTAGT 57.983 34.615 0.00 0.00 0.00 2.57
1344 2533 9.405587 GTAGAGCAGAAGAACATTATTAGCTAG 57.594 37.037 0.00 0.00 0.00 3.42
1345 2534 8.361139 GGTAGAGCAGAAGAACATTATTAGCTA 58.639 37.037 0.00 0.00 0.00 3.32
1346 2535 7.213678 GGTAGAGCAGAAGAACATTATTAGCT 58.786 38.462 0.00 0.00 0.00 3.32
1446 2635 7.043125 ACTCGTATGTTTCTCATCAATCAATCG 60.043 37.037 0.00 0.00 37.91 3.34
1468 2657 1.402456 CGTTCCCTCAACTACCACTCG 60.402 57.143 0.00 0.00 32.09 4.18
1483 2672 1.149148 GAAAGACAGACTGGCGTTCC 58.851 55.000 22.28 7.88 37.82 3.62
1513 2703 3.439129 GTCAAGTTTGGTGGCCACTATAC 59.561 47.826 33.91 30.50 30.78 1.47
1514 2704 3.560453 GGTCAAGTTTGGTGGCCACTATA 60.560 47.826 33.91 21.60 40.67 1.31
1536 2731 1.308998 ACTTTTGGAGTGTTCTGCGG 58.691 50.000 0.00 0.00 37.17 5.69
1540 2735 2.224450 CCGGGTACTTTTGGAGTGTTCT 60.224 50.000 0.00 0.00 39.48 3.01
1612 2811 7.981789 CCTTGTGTAATTTATCTAGCTGTGAGA 59.018 37.037 0.00 0.00 0.00 3.27
1719 2961 1.271379 TGGCAGACTTTCAGTTAGGCC 60.271 52.381 0.00 0.00 38.56 5.19
1722 2964 7.550551 TGATAATTCTGGCAGACTTTCAGTTAG 59.449 37.037 22.79 0.00 0.00 2.34
1727 2969 4.631377 CGTGATAATTCTGGCAGACTTTCA 59.369 41.667 22.79 20.42 0.00 2.69
1737 2979 6.978343 TTTCAGTAACCGTGATAATTCTGG 57.022 37.500 0.00 0.00 0.00 3.86
1746 2988 5.407387 GCTAAGATGTTTTCAGTAACCGTGA 59.593 40.000 0.00 0.00 0.00 4.35
1770 3012 2.698803 TCAGTGGTTCGTCATCATTGG 58.301 47.619 0.00 0.00 0.00 3.16
1784 3026 6.051074 TCTGTATGACATTTAGCATCAGTGG 58.949 40.000 0.00 0.00 0.00 4.00
1825 3068 8.287503 ACATACAGAATAAAAACGTCAAACTCC 58.712 33.333 0.00 0.00 0.00 3.85
1838 3081 8.097038 GGGATCTGCAGATACATACAGAATAAA 58.903 37.037 34.51 1.74 42.08 1.40
1893 3158 0.957888 GCTTCTCTCGGCAAGCCTTT 60.958 55.000 9.73 0.00 39.36 3.11
1899 3164 2.573869 CGGAGCTTCTCTCGGCAA 59.426 61.111 0.00 0.00 42.82 4.52
1905 3170 2.044848 TCTCGCCGGAGCTTCTCT 60.045 61.111 5.05 0.00 40.26 3.10
2004 3277 1.467035 GGCTACTAGTGAACACGTCGG 60.467 57.143 5.39 0.00 36.20 4.79
2182 3455 1.614413 GAGTCCTGGAGTGACTCGTTT 59.386 52.381 9.20 0.00 46.49 3.60
2258 3531 3.764434 AGATCCTGAGCTTTTCTGTACGA 59.236 43.478 0.00 0.00 0.00 3.43
2288 3562 1.156736 GCATACATACGGCCACATCC 58.843 55.000 2.24 0.00 0.00 3.51
2297 3571 3.243101 ACTTCTCGGACTGCATACATACG 60.243 47.826 0.00 0.00 0.00 3.06
2343 3617 2.664081 CCCTCTCGGCCTTCAGCTT 61.664 63.158 0.00 0.00 43.05 3.74
2534 3808 3.853104 CGGTATCCACTGCCAGAAA 57.147 52.632 0.00 0.00 0.00 2.52
2653 3927 1.097547 AGCAAGCTTCAACACACGCT 61.098 50.000 0.00 0.00 0.00 5.07
2743 4018 8.377799 TCATTATATCCACAGCACAATCATAGT 58.622 33.333 0.00 0.00 0.00 2.12
2791 4066 3.657398 TGAGCAATGATCACCAGGAAT 57.343 42.857 0.00 0.00 0.00 3.01
2824 4099 5.506483 CGCTATCACACTAGAGCTGTTACAT 60.506 44.000 0.00 0.00 31.47 2.29
2838 4113 5.696270 TGAACCATATTCATCGCTATCACAC 59.304 40.000 0.00 0.00 0.00 3.82
2924 4209 9.337396 TGATTCTTCCTATATTTGCGTTAATGT 57.663 29.630 0.00 0.00 0.00 2.71
2952 4237 4.489810 TCATTTTGTTTTCTTGCACGTGT 58.510 34.783 18.38 0.00 0.00 4.49
3135 4894 8.058667 TGCAAATGTCATGATAGAAGAAACAT 57.941 30.769 0.00 0.00 0.00 2.71
3149 4908 3.489738 GCCGATAAGCTTGCAAATGTCAT 60.490 43.478 9.86 0.00 0.00 3.06
3228 4988 0.249868 TGACTCCAACTTCAGTGCGG 60.250 55.000 0.00 0.00 0.00 5.69
3256 5016 4.040829 ACTGTCATCATTGTCACTTCTCCA 59.959 41.667 0.00 0.00 0.00 3.86
3270 5030 1.877637 CCGTCCACAAACTGTCATCA 58.122 50.000 0.00 0.00 0.00 3.07
3310 5070 1.896660 GACCCACACATGCAACCGT 60.897 57.895 0.00 0.00 0.00 4.83
3315 5075 1.271325 CCTACAAGACCCACACATGCA 60.271 52.381 0.00 0.00 0.00 3.96
3388 5148 4.881850 ACCTGGCTAATTACAGAAAATCGG 59.118 41.667 4.98 0.00 36.86 4.18
3389 5149 7.548196 TTACCTGGCTAATTACAGAAAATCG 57.452 36.000 4.98 0.00 36.86 3.34
3391 5151 9.700831 AGAATTACCTGGCTAATTACAGAAAAT 57.299 29.630 11.62 2.55 36.86 1.82
3397 5157 7.987458 CAGAAGAGAATTACCTGGCTAATTACA 59.013 37.037 11.62 0.00 0.00 2.41
3421 5181 2.551459 CACAGAAGTTCAAAGGGCTCAG 59.449 50.000 5.50 0.00 0.00 3.35
3451 5211 0.249155 TGAACGTCTTGTCCGTCACC 60.249 55.000 0.00 0.00 37.61 4.02
3459 5219 5.640357 TGTTACTTGAACTTGAACGTCTTGT 59.360 36.000 0.00 0.00 38.98 3.16
3491 5251 7.073342 GTGAAACCATGAACCTGTAACTATC 57.927 40.000 0.00 0.00 0.00 2.08
3511 5271 9.639563 TCTTTTGGCATATCTTTATATGGTGAA 57.360 29.630 7.33 0.00 43.54 3.18
3512 5272 9.288576 CTCTTTTGGCATATCTTTATATGGTGA 57.711 33.333 7.33 0.00 43.54 4.02
3513 5273 9.288576 TCTCTTTTGGCATATCTTTATATGGTG 57.711 33.333 7.33 0.00 43.54 4.17
3514 5274 9.289782 GTCTCTTTTGGCATATCTTTATATGGT 57.710 33.333 7.33 0.00 43.54 3.55
3515 5275 9.512588 AGTCTCTTTTGGCATATCTTTATATGG 57.487 33.333 7.33 0.00 43.54 2.74
3517 5277 9.007901 GCAGTCTCTTTTGGCATATCTTTATAT 57.992 33.333 0.00 0.00 0.00 0.86
3518 5278 7.445402 GGCAGTCTCTTTTGGCATATCTTTATA 59.555 37.037 0.00 0.00 39.44 0.98
3519 5279 6.264067 GGCAGTCTCTTTTGGCATATCTTTAT 59.736 38.462 0.00 0.00 39.44 1.40
3520 5280 5.590259 GGCAGTCTCTTTTGGCATATCTTTA 59.410 40.000 0.00 0.00 39.44 1.85
3521 5281 4.400567 GGCAGTCTCTTTTGGCATATCTTT 59.599 41.667 0.00 0.00 39.44 2.52
3522 5282 3.950395 GGCAGTCTCTTTTGGCATATCTT 59.050 43.478 0.00 0.00 39.44 2.40
3523 5283 3.549794 GGCAGTCTCTTTTGGCATATCT 58.450 45.455 0.00 0.00 39.44 1.98
3524 5284 2.289002 CGGCAGTCTCTTTTGGCATATC 59.711 50.000 0.00 0.00 39.61 1.63
3525 5285 2.292267 CGGCAGTCTCTTTTGGCATAT 58.708 47.619 0.00 0.00 39.61 1.78
3526 5286 1.737838 CGGCAGTCTCTTTTGGCATA 58.262 50.000 0.00 0.00 39.61 3.14
3527 5287 1.589716 GCGGCAGTCTCTTTTGGCAT 61.590 55.000 0.00 0.00 39.61 4.40
3528 5288 2.260869 GCGGCAGTCTCTTTTGGCA 61.261 57.895 0.00 0.00 39.61 4.92
3529 5289 1.916697 GAGCGGCAGTCTCTTTTGGC 61.917 60.000 1.45 0.00 36.60 4.52
3530 5290 0.603707 TGAGCGGCAGTCTCTTTTGG 60.604 55.000 1.45 0.00 0.00 3.28
3531 5291 1.229428 TTGAGCGGCAGTCTCTTTTG 58.771 50.000 1.45 0.00 0.00 2.44
3532 5292 1.876156 CTTTGAGCGGCAGTCTCTTTT 59.124 47.619 1.45 0.00 0.00 2.27
3533 5293 1.202698 ACTTTGAGCGGCAGTCTCTTT 60.203 47.619 1.45 0.00 0.00 2.52
3534 5294 0.394565 ACTTTGAGCGGCAGTCTCTT 59.605 50.000 1.45 0.00 0.00 2.85
3535 5295 0.037790 GACTTTGAGCGGCAGTCTCT 60.038 55.000 1.45 0.00 35.10 3.10
3536 5296 0.037790 AGACTTTGAGCGGCAGTCTC 60.038 55.000 13.21 0.00 43.10 3.36
3537 5297 2.053618 AGACTTTGAGCGGCAGTCT 58.946 52.632 13.21 13.21 42.05 3.24
3538 5298 1.067495 AGTAGACTTTGAGCGGCAGTC 60.067 52.381 9.47 9.47 37.76 3.51
3539 5299 0.969894 AGTAGACTTTGAGCGGCAGT 59.030 50.000 1.45 0.00 0.00 4.40
3540 5300 1.634702 GAGTAGACTTTGAGCGGCAG 58.365 55.000 1.45 0.00 0.00 4.85
3541 5301 0.246635 GGAGTAGACTTTGAGCGGCA 59.753 55.000 1.45 0.00 0.00 5.69
3542 5302 0.802607 CGGAGTAGACTTTGAGCGGC 60.803 60.000 0.00 0.00 0.00 6.53
3543 5303 0.802607 GCGGAGTAGACTTTGAGCGG 60.803 60.000 0.00 0.00 0.00 5.52
3544 5304 1.134530 CGCGGAGTAGACTTTGAGCG 61.135 60.000 0.00 7.31 40.37 5.03
3545 5305 1.414527 GCGCGGAGTAGACTTTGAGC 61.415 60.000 8.83 0.00 0.00 4.26
3546 5306 0.802607 GGCGCGGAGTAGACTTTGAG 60.803 60.000 8.83 0.00 0.00 3.02
3547 5307 1.214589 GGCGCGGAGTAGACTTTGA 59.785 57.895 8.83 0.00 0.00 2.69
3548 5308 1.080093 TGGCGCGGAGTAGACTTTG 60.080 57.895 8.83 0.00 0.00 2.77
3549 5309 1.080025 GTGGCGCGGAGTAGACTTT 60.080 57.895 8.83 0.00 0.00 2.66
3550 5310 2.572284 GTGGCGCGGAGTAGACTT 59.428 61.111 8.83 0.00 0.00 3.01
3551 5311 3.450115 GGTGGCGCGGAGTAGACT 61.450 66.667 8.83 0.00 0.00 3.24
3552 5312 4.849329 CGGTGGCGCGGAGTAGAC 62.849 72.222 8.83 0.00 0.00 2.59
3569 5329 3.623934 AATGGAAGGGGGCCAAGGC 62.624 63.158 4.39 1.52 39.21 4.35
3570 5330 1.381735 GAATGGAAGGGGGCCAAGG 60.382 63.158 4.39 0.00 39.21 3.61
3571 5331 0.396278 GAGAATGGAAGGGGGCCAAG 60.396 60.000 4.39 0.00 39.21 3.61
3572 5332 1.697297 GAGAATGGAAGGGGGCCAA 59.303 57.895 4.39 0.00 39.21 4.52
3573 5333 2.316586 GGAGAATGGAAGGGGGCCA 61.317 63.158 4.39 0.00 40.24 5.36
3574 5334 2.603580 GGAGAATGGAAGGGGGCC 59.396 66.667 0.00 0.00 0.00 5.80
3575 5335 1.659035 ATGGGAGAATGGAAGGGGGC 61.659 60.000 0.00 0.00 0.00 5.80
3576 5336 0.480252 GATGGGAGAATGGAAGGGGG 59.520 60.000 0.00 0.00 0.00 5.40
3577 5337 1.423161 GAGATGGGAGAATGGAAGGGG 59.577 57.143 0.00 0.00 0.00 4.79
3578 5338 1.071385 CGAGATGGGAGAATGGAAGGG 59.929 57.143 0.00 0.00 0.00 3.95
3579 5339 1.542108 GCGAGATGGGAGAATGGAAGG 60.542 57.143 0.00 0.00 0.00 3.46
3580 5340 1.871408 CGCGAGATGGGAGAATGGAAG 60.871 57.143 0.00 0.00 0.00 3.46
3581 5341 0.104855 CGCGAGATGGGAGAATGGAA 59.895 55.000 0.00 0.00 0.00 3.53
3582 5342 1.742146 CGCGAGATGGGAGAATGGA 59.258 57.895 0.00 0.00 0.00 3.41
3583 5343 1.301244 CCGCGAGATGGGAGAATGG 60.301 63.158 8.23 0.00 0.00 3.16
3584 5344 1.958205 GCCGCGAGATGGGAGAATG 60.958 63.158 8.23 0.00 0.00 2.67
3585 5345 2.423446 GCCGCGAGATGGGAGAAT 59.577 61.111 8.23 0.00 0.00 2.40
3586 5346 3.849951 GGCCGCGAGATGGGAGAA 61.850 66.667 8.23 0.00 0.00 2.87
3587 5347 4.841617 AGGCCGCGAGATGGGAGA 62.842 66.667 8.23 0.00 0.00 3.71
3588 5348 3.854669 AAGGCCGCGAGATGGGAG 61.855 66.667 8.23 0.00 0.00 4.30
3589 5349 4.161295 CAAGGCCGCGAGATGGGA 62.161 66.667 8.23 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.