Multiple sequence alignment - TraesCS1B01G286500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G286500 chr1B 100.000 3025 0 0 1 3025 498630341 498633365 0.000000e+00 5587.0
1 TraesCS1B01G286500 chr1A 90.834 1931 124 29 40 1948 473009546 473011445 0.000000e+00 2536.0
2 TraesCS1B01G286500 chr1A 91.892 666 44 5 1945 2605 473011547 473012207 0.000000e+00 922.0
3 TraesCS1B01G286500 chr1A 78.453 181 25 11 2808 2982 527949353 527949181 4.120000e-19 106.0
4 TraesCS1B01G286500 chr1D 87.304 1276 94 33 40 1284 373366807 373368045 0.000000e+00 1397.0
5 TraesCS1B01G286500 chr1D 91.197 1011 67 14 1316 2324 373368045 373369035 0.000000e+00 1354.0
6 TraesCS1B01G286500 chr2B 77.068 266 49 11 2708 2970 404425207 404424951 3.140000e-30 143.0
7 TraesCS1B01G286500 chr2B 79.891 184 29 6 2808 2989 45729755 45729578 8.800000e-26 128.0
8 TraesCS1B01G286500 chr2B 88.350 103 9 3 2697 2797 647539344 647539445 1.470000e-23 121.0
9 TraesCS1B01G286500 chr2B 79.310 174 30 4 2810 2982 438743967 438744135 1.910000e-22 117.0
10 TraesCS1B01G286500 chr2B 79.070 172 30 5 2799 2969 690602882 690602716 2.460000e-21 113.0
11 TraesCS1B01G286500 chr2B 78.736 174 27 9 2799 2969 690678002 690677836 1.150000e-19 108.0
12 TraesCS1B01G286500 chr2A 81.977 172 23 6 2813 2982 69311167 69311002 4.070000e-29 139.0
13 TraesCS1B01G286500 chr2A 89.583 96 9 1 2709 2803 438726429 438726334 1.470000e-23 121.0
14 TraesCS1B01G286500 chr2A 80.303 132 20 4 2852 2982 758422548 758422422 8.930000e-16 95.3
15 TraesCS1B01G286500 chr5D 81.250 176 27 4 2808 2982 449691255 449691425 1.460000e-28 137.0
16 TraesCS1B01G286500 chr5D 92.308 91 7 0 2708 2798 253048862 253048772 2.450000e-26 130.0
17 TraesCS1B01G286500 chr7B 93.333 90 4 2 2706 2794 713437617 713437705 6.800000e-27 132.0
18 TraesCS1B01G286500 chr7B 90.722 97 9 0 2706 2802 65814966 65815062 2.450000e-26 130.0
19 TraesCS1B01G286500 chr7B 90.722 97 9 0 2706 2802 648997991 648998087 2.450000e-26 130.0
20 TraesCS1B01G286500 chr3B 90.722 97 9 0 2706 2802 644366954 644366858 2.450000e-26 130.0
21 TraesCS1B01G286500 chr4D 90.625 96 9 0 2702 2797 71301592 71301687 8.800000e-26 128.0
22 TraesCS1B01G286500 chr2D 78.488 172 31 5 2799 2969 574436894 574436728 1.150000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G286500 chr1B 498630341 498633365 3024 False 5587.0 5587 100.0000 1 3025 1 chr1B.!!$F1 3024
1 TraesCS1B01G286500 chr1A 473009546 473012207 2661 False 1729.0 2536 91.3630 40 2605 2 chr1A.!!$F1 2565
2 TraesCS1B01G286500 chr1D 373366807 373369035 2228 False 1375.5 1397 89.2505 40 2324 2 chr1D.!!$F1 2284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 710 0.036306 ACGGGAGGGTCATGTTTGTC 59.964 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2663 2815 0.109342 GGGGTGAATCATCGAGCCAT 59.891 55.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.396540 GGAATAACTTGGATTGTTCATGAGT 57.603 36.000 0.00 0.00 32.86 3.41
25 26 7.830739 GGAATAACTTGGATTGTTCATGAGTT 58.169 34.615 0.00 0.00 32.86 3.01
26 27 8.306761 GGAATAACTTGGATTGTTCATGAGTTT 58.693 33.333 0.00 0.00 32.86 2.66
27 28 9.696917 GAATAACTTGGATTGTTCATGAGTTTT 57.303 29.630 0.00 0.00 31.87 2.43
60 61 4.853924 ACTGTTTATGGGCTGAGTTTTG 57.146 40.909 0.00 0.00 0.00 2.44
64 65 5.355596 TGTTTATGGGCTGAGTTTTGTTTG 58.644 37.500 0.00 0.00 0.00 2.93
65 66 5.127845 TGTTTATGGGCTGAGTTTTGTTTGA 59.872 36.000 0.00 0.00 0.00 2.69
68 69 3.360867 TGGGCTGAGTTTTGTTTGAGAA 58.639 40.909 0.00 0.00 0.00 2.87
70 71 4.112634 GGGCTGAGTTTTGTTTGAGAAAC 58.887 43.478 0.00 0.00 41.73 2.78
100 101 1.376037 GGCTGAGTGGGTACTGTGC 60.376 63.158 0.00 0.00 37.25 4.57
103 104 1.275291 GCTGAGTGGGTACTGTGCTTA 59.725 52.381 0.00 0.00 37.25 3.09
211 215 0.319125 GTCTCTGATTCGGCCCGATC 60.319 60.000 6.69 7.64 35.23 3.69
323 329 2.491022 GCGCATCTCGGAGGTAGGT 61.491 63.158 0.30 0.00 38.94 3.08
332 343 1.623542 CGGAGGTAGGTTTCCCCCAG 61.624 65.000 0.00 0.00 0.00 4.45
337 348 0.843343 GTAGGTTTCCCCCAGTCCCA 60.843 60.000 0.00 0.00 0.00 4.37
344 355 0.919289 TCCCCCAGTCCCATCCTTTC 60.919 60.000 0.00 0.00 0.00 2.62
360 371 1.536766 CTTTCCGCACTCAATTCTGCA 59.463 47.619 0.00 0.00 32.57 4.41
393 404 3.188786 GCTGCGGCGATCTCGTTT 61.189 61.111 12.98 0.00 42.22 3.60
410 421 3.249080 TCGTTTGAAATCCGTCTTGTTCC 59.751 43.478 0.00 0.00 0.00 3.62
413 424 1.153353 GAAATCCGTCTTGTTCCGCA 58.847 50.000 0.00 0.00 0.00 5.69
439 450 3.383185 GGGGAATTATTTGTTGGATGCGA 59.617 43.478 0.00 0.00 0.00 5.10
497 508 4.124238 TGTGCGGTATAGGTTGCTTAATC 58.876 43.478 0.00 0.00 0.00 1.75
506 520 1.127951 GGTTGCTTAATCGTCCGTGTG 59.872 52.381 0.00 0.00 0.00 3.82
633 647 6.425721 CGTGGATTCTTGTTTACCTAGTGAAA 59.574 38.462 0.00 0.00 0.00 2.69
634 648 7.360101 CGTGGATTCTTGTTTACCTAGTGAAAG 60.360 40.741 0.00 0.00 0.00 2.62
637 651 9.232473 GGATTCTTGTTTACCTAGTGAAAGAAT 57.768 33.333 7.30 7.30 42.53 2.40
689 708 1.586154 GCACGGGAGGGTCATGTTTG 61.586 60.000 0.00 0.00 34.03 2.93
691 710 0.036306 ACGGGAGGGTCATGTTTGTC 59.964 55.000 0.00 0.00 0.00 3.18
709 728 6.256104 TGTTTGTCATTGTTCTTTTCATGCAG 59.744 34.615 0.00 0.00 0.00 4.41
712 731 6.210796 TGTCATTGTTCTTTTCATGCAGAAG 58.789 36.000 0.00 0.00 37.57 2.85
715 734 5.581126 TTGTTCTTTTCATGCAGAAGTGT 57.419 34.783 0.00 0.00 37.57 3.55
751 770 8.623903 GCATAACTCCATTCATTCACTCAAATA 58.376 33.333 0.00 0.00 0.00 1.40
769 788 6.507900 TCAAATACTCCGATGTTCATCTCTC 58.492 40.000 10.44 0.00 0.00 3.20
770 789 6.322456 TCAAATACTCCGATGTTCATCTCTCT 59.678 38.462 10.44 0.00 0.00 3.10
771 790 7.502561 TCAAATACTCCGATGTTCATCTCTCTA 59.497 37.037 10.44 0.00 0.00 2.43
772 791 7.825331 AATACTCCGATGTTCATCTCTCTAA 57.175 36.000 10.44 0.00 0.00 2.10
809 835 8.356657 TGGGAAATAATTGCTATGGTATTTTCG 58.643 33.333 0.00 0.00 0.00 3.46
822 848 4.142204 TGGTATTTTCGTATCGTAGCCACA 60.142 41.667 0.00 0.00 0.00 4.17
842 868 1.321474 TGCTTTCTGTTGGCCTTGAG 58.679 50.000 3.32 0.00 0.00 3.02
859 885 4.202253 CCTTGAGCCCTATTAATTTTGGCC 60.202 45.833 15.17 0.00 43.18 5.36
909 935 6.183360 TGTCTTGCTGTCGATCTATTTGGATA 60.183 38.462 0.00 0.00 0.00 2.59
968 1002 4.668289 CCATGCCGTTTAACTGTAATTCC 58.332 43.478 0.00 0.00 0.00 3.01
1102 1136 5.003804 TGGACTCAGGTAATTCTTCTTTGC 58.996 41.667 0.00 0.00 0.00 3.68
1104 1138 5.707764 GGACTCAGGTAATTCTTCTTTGCTT 59.292 40.000 0.00 0.00 0.00 3.91
1135 1169 9.522804 CAAGTTATACTGGTTCAGATACTCTTC 57.477 37.037 1.59 0.00 35.18 2.87
1140 1174 8.824756 ATACTGGTTCAGATACTCTTCACTTA 57.175 34.615 1.59 0.00 35.18 2.24
1143 1177 5.422331 TGGTTCAGATACTCTTCACTTAGGG 59.578 44.000 0.00 0.00 0.00 3.53
1145 1179 6.325286 GGTTCAGATACTCTTCACTTAGGGAT 59.675 42.308 0.00 0.00 0.00 3.85
1146 1180 7.147637 GGTTCAGATACTCTTCACTTAGGGATT 60.148 40.741 0.00 0.00 0.00 3.01
1147 1181 8.915036 GTTCAGATACTCTTCACTTAGGGATTA 58.085 37.037 0.00 0.00 0.00 1.75
1148 1182 8.698973 TCAGATACTCTTCACTTAGGGATTAG 57.301 38.462 0.00 0.00 0.00 1.73
1149 1183 7.726291 TCAGATACTCTTCACTTAGGGATTAGG 59.274 40.741 0.00 0.00 0.00 2.69
1150 1184 7.013834 AGATACTCTTCACTTAGGGATTAGGG 58.986 42.308 0.00 0.00 0.00 3.53
1151 1185 5.222278 ACTCTTCACTTAGGGATTAGGGA 57.778 43.478 0.00 0.00 0.00 4.20
1152 1186 5.793967 ACTCTTCACTTAGGGATTAGGGAT 58.206 41.667 0.00 0.00 0.00 3.85
1159 1193 1.450360 AGGGATTAGGGATTGCCTCC 58.550 55.000 0.00 0.00 44.11 4.30
1174 1208 2.308570 TGCCTCCAGCTTTTCTTATGGA 59.691 45.455 0.00 0.00 44.23 3.41
1179 1213 5.832060 CCTCCAGCTTTTCTTATGGATTGAT 59.168 40.000 0.00 0.00 40.91 2.57
1180 1214 6.238953 CCTCCAGCTTTTCTTATGGATTGATG 60.239 42.308 0.00 0.00 40.91 3.07
1220 1256 7.647907 AAAAGATAAAATTTGCTGCACTCTG 57.352 32.000 0.00 0.00 0.00 3.35
1234 1270 2.286654 GCACTCTGTTCTGTTGCTGAAC 60.287 50.000 10.56 10.56 40.85 3.18
1284 1320 5.041191 ACTTTCAGTCAGGTCATTGAGTT 57.959 39.130 0.00 0.00 0.00 3.01
1367 1403 6.536688 GCATATCAAAACTTGTCAATTTGGC 58.463 36.000 10.36 0.00 35.34 4.52
1369 1405 7.545265 GCATATCAAAACTTGTCAATTTGGCTA 59.455 33.333 10.36 0.00 35.34 3.93
1376 1412 6.259550 ACTTGTCAATTTGGCTACTTCATC 57.740 37.500 2.24 0.00 0.00 2.92
1390 1426 5.507817 GCTACTTCATCAGAGGATGTGAGAG 60.508 48.000 12.58 4.92 43.71 3.20
1392 1428 1.680207 TCATCAGAGGATGTGAGAGCG 59.320 52.381 4.76 0.00 43.71 5.03
1466 1502 6.480524 TTGTTCATATCGTTTGACTTGGAG 57.519 37.500 0.00 0.00 0.00 3.86
1488 1524 1.028905 TGCTTGTTACAGTTGGTGCC 58.971 50.000 0.00 0.00 0.00 5.01
1521 1557 5.297776 TGAAGAAAAGCTTGAGTTCCTTCTG 59.702 40.000 0.00 0.00 36.83 3.02
1863 1903 5.000012 TGTTAGTTTTGGCACGACAATTT 58.000 34.783 0.00 0.00 0.00 1.82
1864 1904 6.132791 TGTTAGTTTTGGCACGACAATTTA 57.867 33.333 0.00 0.00 0.00 1.40
2188 2333 2.833794 TGTGAGTGTGTTACTGCTTCC 58.166 47.619 0.00 0.00 40.53 3.46
2222 2367 7.394077 TGAGAAGTTGATTGATAATTTGCTGGA 59.606 33.333 0.00 0.00 0.00 3.86
2235 2384 8.814038 ATAATTTGCTGGAGTTATGTTTCTCT 57.186 30.769 0.00 0.00 0.00 3.10
2236 2385 6.749923 ATTTGCTGGAGTTATGTTTCTCTC 57.250 37.500 0.00 0.00 0.00 3.20
2240 2389 4.034975 GCTGGAGTTATGTTTCTCTCATGC 59.965 45.833 0.00 0.00 0.00 4.06
2245 2394 4.946157 AGTTATGTTTCTCTCATGCCTTGG 59.054 41.667 0.00 0.00 0.00 3.61
2252 2401 0.961019 TCTCATGCCTTGGTGTTTGC 59.039 50.000 0.00 0.00 0.00 3.68
2261 2411 0.816018 TTGGTGTTTGCGGTCGTGAT 60.816 50.000 0.00 0.00 0.00 3.06
2272 2422 1.290203 GGTCGTGATAGTGCACATGG 58.710 55.000 21.04 1.83 38.69 3.66
2273 2423 1.134818 GGTCGTGATAGTGCACATGGA 60.135 52.381 21.04 4.34 38.69 3.41
2324 2474 7.689299 TGGTGAAAGGATCTTGATTTTCTCTA 58.311 34.615 0.00 2.68 32.28 2.43
2350 2500 3.968265 TGAATGGGTTTTCTCTGGGATC 58.032 45.455 0.00 0.00 0.00 3.36
2357 2507 3.274288 GTTTTCTCTGGGATCGAATGCT 58.726 45.455 0.00 0.00 0.00 3.79
2363 2513 2.768527 TCTGGGATCGAATGCTCTTTCT 59.231 45.455 0.00 0.00 0.00 2.52
2375 2525 2.092968 TGCTCTTTCTTCACACTGGTGT 60.093 45.455 0.01 0.01 45.45 4.16
2443 2595 5.307976 TCTGAACAGAAAGGAGAATGGAGAA 59.692 40.000 1.79 0.00 33.91 2.87
2447 2599 3.688673 CAGAAAGGAGAATGGAGAAGCAC 59.311 47.826 0.00 0.00 0.00 4.40
2454 2606 4.383552 GGAGAATGGAGAAGCACACATAGT 60.384 45.833 0.00 0.00 0.00 2.12
2460 2612 4.515191 TGGAGAAGCACACATAGTTTTGAC 59.485 41.667 0.00 0.00 0.00 3.18
2471 2623 8.134895 CACACATAGTTTTGACTAAATTGGTGT 58.865 33.333 9.43 9.43 36.58 4.16
2527 2679 8.615211 CGTTCATCTTTCATTGGATCTTCATAA 58.385 33.333 0.00 0.00 0.00 1.90
2552 2704 2.107378 TGGGGTATTGTGAGCTTTGACA 59.893 45.455 0.00 0.00 0.00 3.58
2560 2712 2.157738 GTGAGCTTTGACAAGAGGCAT 58.842 47.619 10.79 0.00 30.57 4.40
2579 2731 3.377485 GCATCAGAAACAGCAGACATCAT 59.623 43.478 0.00 0.00 0.00 2.45
2594 2746 3.986572 GACATCATCTGCGATACTTCAGG 59.013 47.826 0.00 0.00 0.00 3.86
2605 2757 4.116238 CGATACTTCAGGAAAGAGGAAGC 58.884 47.826 0.00 0.00 41.26 3.86
2606 2758 4.382040 CGATACTTCAGGAAAGAGGAAGCA 60.382 45.833 0.00 0.00 41.26 3.91
2607 2759 3.864789 ACTTCAGGAAAGAGGAAGCAA 57.135 42.857 0.00 0.00 41.26 3.91
2608 2760 4.379302 ACTTCAGGAAAGAGGAAGCAAT 57.621 40.909 0.00 0.00 41.26 3.56
2609 2761 4.734266 ACTTCAGGAAAGAGGAAGCAATT 58.266 39.130 0.00 0.00 41.26 2.32
2610 2762 5.880901 ACTTCAGGAAAGAGGAAGCAATTA 58.119 37.500 0.00 0.00 41.26 1.40
2611 2763 6.306987 ACTTCAGGAAAGAGGAAGCAATTAA 58.693 36.000 0.00 0.00 41.26 1.40
2612 2764 6.207614 ACTTCAGGAAAGAGGAAGCAATTAAC 59.792 38.462 0.00 0.00 41.26 2.01
2613 2765 5.630121 TCAGGAAAGAGGAAGCAATTAACA 58.370 37.500 0.00 0.00 0.00 2.41
2614 2766 5.707298 TCAGGAAAGAGGAAGCAATTAACAG 59.293 40.000 0.00 0.00 0.00 3.16
2615 2767 5.707298 CAGGAAAGAGGAAGCAATTAACAGA 59.293 40.000 0.00 0.00 0.00 3.41
2616 2768 5.942826 AGGAAAGAGGAAGCAATTAACAGAG 59.057 40.000 0.00 0.00 0.00 3.35
2617 2769 5.940470 GGAAAGAGGAAGCAATTAACAGAGA 59.060 40.000 0.00 0.00 0.00 3.10
2618 2770 6.431234 GGAAAGAGGAAGCAATTAACAGAGAA 59.569 38.462 0.00 0.00 0.00 2.87
2619 2771 6.809630 AAGAGGAAGCAATTAACAGAGAAC 57.190 37.500 0.00 0.00 0.00 3.01
2620 2772 4.932200 AGAGGAAGCAATTAACAGAGAACG 59.068 41.667 0.00 0.00 0.00 3.95
2621 2773 3.437049 AGGAAGCAATTAACAGAGAACGC 59.563 43.478 0.00 0.00 0.00 4.84
2622 2774 3.437049 GGAAGCAATTAACAGAGAACGCT 59.563 43.478 0.00 0.00 0.00 5.07
2623 2775 4.630069 GGAAGCAATTAACAGAGAACGCTA 59.370 41.667 0.00 0.00 0.00 4.26
2624 2776 5.220491 GGAAGCAATTAACAGAGAACGCTAG 60.220 44.000 0.00 0.00 0.00 3.42
2625 2777 3.619038 AGCAATTAACAGAGAACGCTAGC 59.381 43.478 4.06 4.06 0.00 3.42
2626 2778 3.242446 GCAATTAACAGAGAACGCTAGCC 60.242 47.826 9.66 0.00 0.00 3.93
2627 2779 3.887621 ATTAACAGAGAACGCTAGCCA 57.112 42.857 9.66 0.00 0.00 4.75
2628 2780 2.941453 TAACAGAGAACGCTAGCCAG 57.059 50.000 9.66 0.00 0.00 4.85
2629 2781 0.969894 AACAGAGAACGCTAGCCAGT 59.030 50.000 9.66 0.00 0.00 4.00
2630 2782 0.528470 ACAGAGAACGCTAGCCAGTC 59.472 55.000 9.66 3.96 0.00 3.51
2631 2783 0.179124 CAGAGAACGCTAGCCAGTCC 60.179 60.000 9.66 0.00 0.00 3.85
2632 2784 1.226717 GAGAACGCTAGCCAGTCCG 60.227 63.158 9.66 0.00 0.00 4.79
2633 2785 1.935327 GAGAACGCTAGCCAGTCCGT 61.935 60.000 9.66 0.00 35.14 4.69
2634 2786 1.080025 GAACGCTAGCCAGTCCGTT 60.080 57.895 9.66 6.12 45.31 4.44
2635 2787 1.352156 GAACGCTAGCCAGTCCGTTG 61.352 60.000 9.66 0.00 43.05 4.10
2636 2788 2.509336 CGCTAGCCAGTCCGTTGG 60.509 66.667 9.66 0.00 41.35 3.77
2637 2789 2.663196 GCTAGCCAGTCCGTTGGT 59.337 61.111 2.29 0.00 40.49 3.67
2638 2790 1.741770 GCTAGCCAGTCCGTTGGTG 60.742 63.158 2.29 0.00 40.49 4.17
2639 2791 1.972198 CTAGCCAGTCCGTTGGTGA 59.028 57.895 0.65 0.00 40.49 4.02
2640 2792 0.389948 CTAGCCAGTCCGTTGGTGAC 60.390 60.000 0.65 0.00 40.49 3.67
2651 2803 2.037053 TTGGTGACGGCAACAATGG 58.963 52.632 20.19 0.00 46.26 3.16
2652 2804 0.753479 TTGGTGACGGCAACAATGGT 60.753 50.000 20.19 0.00 46.26 3.55
2653 2805 1.285641 GGTGACGGCAACAATGGTG 59.714 57.895 0.00 0.00 0.00 4.17
2654 2806 1.285641 GTGACGGCAACAATGGTGG 59.714 57.895 0.00 0.00 0.00 4.61
2655 2807 1.149401 TGACGGCAACAATGGTGGA 59.851 52.632 0.00 0.00 0.00 4.02
2656 2808 0.251121 TGACGGCAACAATGGTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
2657 2809 0.451783 GACGGCAACAATGGTGGATC 59.548 55.000 0.00 0.00 0.00 3.36
2658 2810 0.251121 ACGGCAACAATGGTGGATCA 60.251 50.000 0.00 0.00 0.00 2.92
2659 2811 0.452987 CGGCAACAATGGTGGATCAG 59.547 55.000 0.00 0.00 0.00 2.90
2660 2812 0.819582 GGCAACAATGGTGGATCAGG 59.180 55.000 0.00 0.00 0.00 3.86
2661 2813 0.174162 GCAACAATGGTGGATCAGGC 59.826 55.000 0.00 0.00 0.00 4.85
2662 2814 0.452987 CAACAATGGTGGATCAGGCG 59.547 55.000 0.00 0.00 0.00 5.52
2663 2815 0.327924 AACAATGGTGGATCAGGCGA 59.672 50.000 0.00 0.00 0.00 5.54
2664 2816 0.548031 ACAATGGTGGATCAGGCGAT 59.452 50.000 0.00 0.00 33.31 4.58
2665 2817 0.949397 CAATGGTGGATCAGGCGATG 59.051 55.000 0.00 0.00 29.66 3.84
2666 2818 0.179009 AATGGTGGATCAGGCGATGG 60.179 55.000 0.00 0.00 29.66 3.51
2667 2819 2.592861 GGTGGATCAGGCGATGGC 60.593 66.667 0.00 0.00 38.90 4.40
2668 2820 2.507944 GTGGATCAGGCGATGGCT 59.492 61.111 0.00 0.00 39.66 4.75
2669 2821 1.596477 GTGGATCAGGCGATGGCTC 60.596 63.158 0.00 0.00 35.88 4.70
2681 2833 1.517242 GATGGCTCGATGATTCACCC 58.483 55.000 0.00 0.00 0.00 4.61
2682 2834 0.109342 ATGGCTCGATGATTCACCCC 59.891 55.000 0.00 0.00 0.00 4.95
2683 2835 0.982852 TGGCTCGATGATTCACCCCT 60.983 55.000 0.00 0.00 0.00 4.79
2684 2836 1.048601 GGCTCGATGATTCACCCCTA 58.951 55.000 0.00 0.00 0.00 3.53
2685 2837 1.001406 GGCTCGATGATTCACCCCTAG 59.999 57.143 0.00 0.00 0.00 3.02
2686 2838 1.689273 GCTCGATGATTCACCCCTAGT 59.311 52.381 0.00 0.00 0.00 2.57
2687 2839 2.891580 GCTCGATGATTCACCCCTAGTA 59.108 50.000 0.00 0.00 0.00 1.82
2688 2840 3.511934 GCTCGATGATTCACCCCTAGTAT 59.488 47.826 0.00 0.00 0.00 2.12
2689 2841 4.021016 GCTCGATGATTCACCCCTAGTATT 60.021 45.833 0.00 0.00 0.00 1.89
2690 2842 5.715070 CTCGATGATTCACCCCTAGTATTC 58.285 45.833 0.00 0.00 0.00 1.75
2691 2843 4.527038 TCGATGATTCACCCCTAGTATTCC 59.473 45.833 0.00 0.00 0.00 3.01
2692 2844 4.322801 CGATGATTCACCCCTAGTATTCCC 60.323 50.000 0.00 0.00 0.00 3.97
2693 2845 4.295905 TGATTCACCCCTAGTATTCCCT 57.704 45.455 0.00 0.00 0.00 4.20
2694 2846 4.641868 TGATTCACCCCTAGTATTCCCTT 58.358 43.478 0.00 0.00 0.00 3.95
2695 2847 4.412199 TGATTCACCCCTAGTATTCCCTTG 59.588 45.833 0.00 0.00 0.00 3.61
2696 2848 2.771688 TCACCCCTAGTATTCCCTTGG 58.228 52.381 0.00 0.00 0.00 3.61
2697 2849 2.046729 TCACCCCTAGTATTCCCTTGGT 59.953 50.000 0.00 0.00 0.00 3.67
2698 2850 2.850568 CACCCCTAGTATTCCCTTGGTT 59.149 50.000 0.00 0.00 0.00 3.67
2699 2851 3.268595 CACCCCTAGTATTCCCTTGGTTT 59.731 47.826 0.00 0.00 0.00 3.27
2700 2852 3.927322 ACCCCTAGTATTCCCTTGGTTTT 59.073 43.478 0.00 0.00 0.00 2.43
2701 2853 4.358918 ACCCCTAGTATTCCCTTGGTTTTT 59.641 41.667 0.00 0.00 0.00 1.94
2702 2854 5.556739 ACCCCTAGTATTCCCTTGGTTTTTA 59.443 40.000 0.00 0.00 0.00 1.52
2703 2855 6.127101 CCCCTAGTATTCCCTTGGTTTTTAG 58.873 44.000 0.00 0.00 0.00 1.85
2704 2856 6.297418 CCCCTAGTATTCCCTTGGTTTTTAGT 60.297 42.308 0.00 0.00 0.00 2.24
2705 2857 7.179966 CCCTAGTATTCCCTTGGTTTTTAGTT 58.820 38.462 0.00 0.00 0.00 2.24
2706 2858 7.672660 CCCTAGTATTCCCTTGGTTTTTAGTTT 59.327 37.037 0.00 0.00 0.00 2.66
2707 2859 9.085645 CCTAGTATTCCCTTGGTTTTTAGTTTT 57.914 33.333 0.00 0.00 0.00 2.43
2713 2865 7.350744 TCCCTTGGTTTTTAGTTTTTACTCC 57.649 36.000 0.00 0.00 0.00 3.85
2714 2866 6.324512 TCCCTTGGTTTTTAGTTTTTACTCCC 59.675 38.462 0.00 0.00 0.00 4.30
2715 2867 6.325545 CCCTTGGTTTTTAGTTTTTACTCCCT 59.674 38.462 0.00 0.00 0.00 4.20
2716 2868 7.431249 CCTTGGTTTTTAGTTTTTACTCCCTC 58.569 38.462 0.00 0.00 0.00 4.30
2717 2869 6.964807 TGGTTTTTAGTTTTTACTCCCTCC 57.035 37.500 0.00 0.00 0.00 4.30
2718 2870 5.532032 TGGTTTTTAGTTTTTACTCCCTCCG 59.468 40.000 0.00 0.00 0.00 4.63
2719 2871 5.532406 GGTTTTTAGTTTTTACTCCCTCCGT 59.468 40.000 0.00 0.00 0.00 4.69
2720 2872 6.039717 GGTTTTTAGTTTTTACTCCCTCCGTT 59.960 38.462 0.00 0.00 0.00 4.44
2721 2873 6.866010 TTTTAGTTTTTACTCCCTCCGTTC 57.134 37.500 0.00 0.00 0.00 3.95
2722 2874 3.413846 AGTTTTTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
2723 2875 2.707257 AGTTTTTACTCCCTCCGTTCCA 59.293 45.455 0.00 0.00 0.00 3.53
2724 2876 3.136992 AGTTTTTACTCCCTCCGTTCCAA 59.863 43.478 0.00 0.00 0.00 3.53
2725 2877 3.860968 TTTTACTCCCTCCGTTCCAAA 57.139 42.857 0.00 0.00 0.00 3.28
2726 2878 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
2727 2879 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
2728 2880 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
2729 2881 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2730 2882 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2731 2883 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2732 2884 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2733 2885 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2734 2886 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2735 2887 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2736 2888 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2737 2889 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2738 2890 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2739 2891 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2740 2892 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2741 2893 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2742 2894 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2743 2895 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2744 2896 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2745 2897 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2746 2898 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2747 2899 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2748 2900 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2749 2901 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2750 2902 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2751 2903 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2752 2904 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2753 2905 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2754 2906 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
2755 2907 8.983702 ATGACCCAACTTTGTACTAACTTTAA 57.016 30.769 0.00 0.00 0.00 1.52
2756 2908 8.983702 TGACCCAACTTTGTACTAACTTTAAT 57.016 30.769 0.00 0.00 0.00 1.40
2759 2911 9.850198 ACCCAACTTTGTACTAACTTTAATACA 57.150 29.630 0.00 0.00 0.00 2.29
2787 2939 8.904099 AATAGATAACCTATTTTGGAACGGAG 57.096 34.615 0.00 0.00 43.63 4.63
2788 2940 5.681639 AGATAACCTATTTTGGAACGGAGG 58.318 41.667 0.00 0.00 0.00 4.30
2789 2941 2.801077 ACCTATTTTGGAACGGAGGG 57.199 50.000 0.00 0.00 0.00 4.30
2790 2942 2.271777 ACCTATTTTGGAACGGAGGGA 58.728 47.619 0.00 0.00 0.00 4.20
2791 2943 2.238898 ACCTATTTTGGAACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2792 2944 2.238898 CCTATTTTGGAACGGAGGGAGT 59.761 50.000 0.00 0.00 0.00 3.85
2793 2945 3.453353 CCTATTTTGGAACGGAGGGAGTA 59.547 47.826 0.00 0.00 0.00 2.59
2794 2946 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2795 2947 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2796 2948 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
2797 2949 2.905415 TGGAACGGAGGGAGTACTTA 57.095 50.000 0.00 0.00 0.00 2.24
2798 2950 3.393426 TGGAACGGAGGGAGTACTTAT 57.607 47.619 0.00 0.00 0.00 1.73
2799 2951 3.716431 TGGAACGGAGGGAGTACTTATT 58.284 45.455 0.00 0.00 0.00 1.40
2800 2952 4.098894 TGGAACGGAGGGAGTACTTATTT 58.901 43.478 0.00 0.00 0.00 1.40
2801 2953 4.081309 TGGAACGGAGGGAGTACTTATTTG 60.081 45.833 0.00 0.00 0.00 2.32
2802 2954 3.538634 ACGGAGGGAGTACTTATTTGC 57.461 47.619 0.00 0.00 0.00 3.68
2803 2955 2.169978 ACGGAGGGAGTACTTATTTGCC 59.830 50.000 0.00 0.00 0.00 4.52
2804 2956 2.434702 CGGAGGGAGTACTTATTTGCCT 59.565 50.000 0.00 0.00 35.15 4.75
2805 2957 3.118371 CGGAGGGAGTACTTATTTGCCTT 60.118 47.826 0.00 0.00 32.34 4.35
2806 2958 4.200092 GGAGGGAGTACTTATTTGCCTTG 58.800 47.826 0.00 0.00 32.34 3.61
2807 2959 4.080526 GGAGGGAGTACTTATTTGCCTTGA 60.081 45.833 0.00 0.00 32.34 3.02
2808 2960 5.104259 AGGGAGTACTTATTTGCCTTGAG 57.896 43.478 0.00 0.00 26.86 3.02
2809 2961 4.536489 AGGGAGTACTTATTTGCCTTGAGT 59.464 41.667 0.00 0.00 26.86 3.41
2810 2962 4.876679 GGGAGTACTTATTTGCCTTGAGTC 59.123 45.833 0.00 0.00 0.00 3.36
2811 2963 5.488341 GGAGTACTTATTTGCCTTGAGTCA 58.512 41.667 0.00 0.00 0.00 3.41
2812 2964 5.938125 GGAGTACTTATTTGCCTTGAGTCAA 59.062 40.000 5.25 5.25 0.00 3.18
2813 2965 6.430000 GGAGTACTTATTTGCCTTGAGTCAAA 59.570 38.462 7.06 0.00 36.72 2.69
2814 2966 7.203255 AGTACTTATTTGCCTTGAGTCAAAC 57.797 36.000 7.06 2.94 35.34 2.93
2815 2967 6.998673 AGTACTTATTTGCCTTGAGTCAAACT 59.001 34.615 7.06 0.09 35.34 2.66
2816 2968 6.715347 ACTTATTTGCCTTGAGTCAAACTT 57.285 33.333 7.06 0.00 35.34 2.66
2817 2969 7.112452 ACTTATTTGCCTTGAGTCAAACTTT 57.888 32.000 7.06 0.00 35.34 2.66
2818 2970 7.203218 ACTTATTTGCCTTGAGTCAAACTTTC 58.797 34.615 7.06 0.00 35.34 2.62
2819 2971 5.859205 ATTTGCCTTGAGTCAAACTTTCT 57.141 34.783 7.06 0.00 35.34 2.52
2820 2972 6.959639 ATTTGCCTTGAGTCAAACTTTCTA 57.040 33.333 7.06 0.00 35.34 2.10
2821 2973 6.767524 TTTGCCTTGAGTCAAACTTTCTAA 57.232 33.333 7.06 0.00 0.00 2.10
2822 2974 6.767524 TTGCCTTGAGTCAAACTTTCTAAA 57.232 33.333 7.06 0.00 0.00 1.85
2823 2975 6.959639 TGCCTTGAGTCAAACTTTCTAAAT 57.040 33.333 7.06 0.00 0.00 1.40
2824 2976 8.458573 TTGCCTTGAGTCAAACTTTCTAAATA 57.541 30.769 7.06 0.00 0.00 1.40
2825 2977 8.635765 TGCCTTGAGTCAAACTTTCTAAATAT 57.364 30.769 7.06 0.00 0.00 1.28
2826 2978 9.077885 TGCCTTGAGTCAAACTTTCTAAATATT 57.922 29.630 7.06 0.00 0.00 1.28
2896 3048 9.661563 TCAATAATAACATTAGAACCGTTGTCT 57.338 29.630 0.00 0.00 0.00 3.41
2963 3115 9.679661 TTATATTGCTCTTGATAAACTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
2964 3116 6.899393 ATTGCTCTTGATAAACTTGGTCAA 57.101 33.333 0.00 0.00 0.00 3.18
2965 3117 6.707440 TTGCTCTTGATAAACTTGGTCAAA 57.293 33.333 0.00 0.00 32.08 2.69
2966 3118 6.707440 TGCTCTTGATAAACTTGGTCAAAA 57.293 33.333 0.00 0.00 32.08 2.44
2967 3119 6.503524 TGCTCTTGATAAACTTGGTCAAAAC 58.496 36.000 0.00 0.00 32.08 2.43
2968 3120 6.321181 TGCTCTTGATAAACTTGGTCAAAACT 59.679 34.615 0.00 0.00 32.08 2.66
2969 3121 7.147915 TGCTCTTGATAAACTTGGTCAAAACTT 60.148 33.333 0.00 0.00 32.08 2.66
2970 3122 7.379797 GCTCTTGATAAACTTGGTCAAAACTTC 59.620 37.037 0.00 0.00 32.08 3.01
2971 3123 8.519799 TCTTGATAAACTTGGTCAAAACTTCT 57.480 30.769 0.00 0.00 32.08 2.85
2972 3124 8.966868 TCTTGATAAACTTGGTCAAAACTTCTT 58.033 29.630 0.00 0.00 32.08 2.52
2981 3133 9.936759 ACTTGGTCAAAACTTCTTAAAATTTGA 57.063 25.926 0.00 0.00 37.59 2.69
3022 3174 8.512966 AAATAAAAATGGAGAGAGTCTAAGCC 57.487 34.615 0.00 0.00 0.00 4.35
3023 3175 5.770685 AAAAATGGAGAGAGTCTAAGCCT 57.229 39.130 0.00 0.00 0.00 4.58
3024 3176 5.770685 AAAATGGAGAGAGTCTAAGCCTT 57.229 39.130 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.396540 ACTCATGAACAATCCAAGTTATTCC 57.603 36.000 0.00 0.00 0.00 3.01
1 2 9.696917 AAAACTCATGAACAATCCAAGTTATTC 57.303 29.630 0.00 0.00 0.00 1.75
29 30 5.988561 CAGCCCATAAACAGTTTGCTAAAAA 59.011 36.000 8.93 0.00 0.00 1.94
30 31 5.303078 TCAGCCCATAAACAGTTTGCTAAAA 59.697 36.000 8.93 0.00 0.00 1.52
31 32 4.830046 TCAGCCCATAAACAGTTTGCTAAA 59.170 37.500 8.93 0.00 0.00 1.85
32 33 4.402829 TCAGCCCATAAACAGTTTGCTAA 58.597 39.130 8.93 0.00 0.00 3.09
33 34 4.009675 CTCAGCCCATAAACAGTTTGCTA 58.990 43.478 8.93 0.00 0.00 3.49
34 35 2.821969 CTCAGCCCATAAACAGTTTGCT 59.178 45.455 8.93 5.82 0.00 3.91
35 36 2.558359 ACTCAGCCCATAAACAGTTTGC 59.442 45.455 8.93 3.49 0.00 3.68
36 37 4.853924 AACTCAGCCCATAAACAGTTTG 57.146 40.909 8.93 0.00 0.00 2.93
37 38 5.128663 ACAAAACTCAGCCCATAAACAGTTT 59.871 36.000 3.49 3.49 35.98 2.66
38 39 4.649218 ACAAAACTCAGCCCATAAACAGTT 59.351 37.500 0.00 0.00 0.00 3.16
60 61 8.872845 CAGCCCATATTTAAATGTTTCTCAAAC 58.127 33.333 11.05 0.00 41.73 2.93
64 65 7.917505 CACTCAGCCCATATTTAAATGTTTCTC 59.082 37.037 11.05 0.00 0.00 2.87
65 66 7.147846 CCACTCAGCCCATATTTAAATGTTTCT 60.148 37.037 11.05 0.00 0.00 2.52
68 69 5.363580 CCCACTCAGCCCATATTTAAATGTT 59.636 40.000 11.05 0.00 0.00 2.71
70 71 4.895297 ACCCACTCAGCCCATATTTAAATG 59.105 41.667 11.05 0.00 0.00 2.32
71 72 5.142806 ACCCACTCAGCCCATATTTAAAT 57.857 39.130 5.89 5.89 0.00 1.40
72 73 4.601406 ACCCACTCAGCCCATATTTAAA 57.399 40.909 0.00 0.00 0.00 1.52
100 101 1.417890 ACAATCTCCGGGCTCCATAAG 59.582 52.381 0.00 0.00 0.00 1.73
103 104 1.528824 CACAATCTCCGGGCTCCAT 59.471 57.895 0.00 0.00 0.00 3.41
211 215 4.391358 CATTTCGCTTTTATATACGGGCG 58.609 43.478 13.02 13.02 43.22 6.13
239 243 4.762289 CTAGGGTTCTAGCCAAATGAGT 57.238 45.455 0.00 0.00 38.48 3.41
323 329 0.479589 AAGGATGGGACTGGGGGAAA 60.480 55.000 0.00 0.00 0.00 3.13
332 343 0.744771 GAGTGCGGAAAGGATGGGAC 60.745 60.000 0.00 0.00 0.00 4.46
337 348 3.012518 CAGAATTGAGTGCGGAAAGGAT 58.987 45.455 0.00 0.00 0.00 3.24
344 355 1.236616 TGGTGCAGAATTGAGTGCGG 61.237 55.000 0.00 0.00 42.96 5.69
381 392 1.004927 CGGATTTCAAACGAGATCGCC 60.005 52.381 1.39 0.00 44.43 5.54
393 404 1.153353 GCGGAACAAGACGGATTTCA 58.847 50.000 0.00 0.00 0.00 2.69
410 421 4.202010 CCAACAAATAATTCCCCTACTGCG 60.202 45.833 0.00 0.00 0.00 5.18
413 424 5.598417 GCATCCAACAAATAATTCCCCTACT 59.402 40.000 0.00 0.00 0.00 2.57
439 450 3.261981 ACAAACAGGAACACTCGTCTT 57.738 42.857 0.00 0.00 0.00 3.01
497 508 0.931702 TTAAGCAACACACACGGACG 59.068 50.000 0.00 0.00 0.00 4.79
506 520 2.979813 CGGAGCAACAATTAAGCAACAC 59.020 45.455 0.00 0.00 0.00 3.32
658 677 1.967066 CTCCCGTGCATCTTAGATCCT 59.033 52.381 0.00 0.00 0.00 3.24
660 679 1.001406 CCCTCCCGTGCATCTTAGATC 59.999 57.143 0.00 0.00 0.00 2.75
689 708 6.143438 CACTTCTGCATGAAAAGAACAATGAC 59.857 38.462 0.00 0.00 33.79 3.06
691 710 5.981315 ACACTTCTGCATGAAAAGAACAATG 59.019 36.000 0.00 2.27 33.79 2.82
709 728 8.673711 TGGAGTTATGCATGTAAATTACACTTC 58.326 33.333 10.16 0.00 42.23 3.01
712 731 9.450807 GAATGGAGTTATGCATGTAAATTACAC 57.549 33.333 10.16 0.00 42.23 2.90
751 770 5.441500 TCTTAGAGAGATGAACATCGGAGT 58.558 41.667 8.79 0.31 42.48 3.85
822 848 1.891150 CTCAAGGCCAACAGAAAGCAT 59.109 47.619 5.01 0.00 0.00 3.79
842 868 4.405680 ACAGAAGGCCAAAATTAATAGGGC 59.594 41.667 5.01 15.88 46.14 5.19
872 898 3.446873 ACAGCAAGACACATGGAAAACAA 59.553 39.130 0.00 0.00 0.00 2.83
873 899 3.023119 ACAGCAAGACACATGGAAAACA 58.977 40.909 0.00 0.00 0.00 2.83
874 900 3.632189 GACAGCAAGACACATGGAAAAC 58.368 45.455 0.00 0.00 0.00 2.43
909 935 3.133721 GCTGAAGATGGGAGTACTGTCAT 59.866 47.826 0.00 3.49 0.00 3.06
968 1002 2.459934 GGAAGCACCTGAAAACAAACG 58.540 47.619 0.00 0.00 35.41 3.60
1102 1136 4.759693 TGAACCAGTATAACTTGCACCAAG 59.240 41.667 3.57 3.57 45.85 3.61
1104 1138 4.041075 TCTGAACCAGTATAACTTGCACCA 59.959 41.667 0.00 0.00 32.61 4.17
1135 1169 3.395941 AGGCAATCCCTAATCCCTAAGTG 59.604 47.826 0.00 0.00 44.08 3.16
1140 1174 1.450360 GGAGGCAATCCCTAATCCCT 58.550 55.000 0.00 0.00 46.60 4.20
1150 1184 4.202090 CCATAAGAAAAGCTGGAGGCAATC 60.202 45.833 0.00 0.00 44.79 2.67
1151 1185 3.703052 CCATAAGAAAAGCTGGAGGCAAT 59.297 43.478 0.00 0.00 44.79 3.56
1152 1186 3.091545 CCATAAGAAAAGCTGGAGGCAA 58.908 45.455 0.00 0.00 44.79 4.52
1376 1412 2.662006 TTTCGCTCTCACATCCTCTG 57.338 50.000 0.00 0.00 0.00 3.35
1447 1483 5.294306 GCAATCTCCAAGTCAAACGATATGA 59.706 40.000 0.00 0.00 0.00 2.15
1454 1490 4.574599 ACAAGCAATCTCCAAGTCAAAC 57.425 40.909 0.00 0.00 0.00 2.93
1466 1502 3.308530 GCACCAACTGTAACAAGCAATC 58.691 45.455 0.00 0.00 0.00 2.67
1488 1524 2.354259 AGCTTTTCTTCATCAGCCTCG 58.646 47.619 0.00 0.00 32.25 4.63
1521 1557 0.600057 CCTTGCCTTTGAGTTCAGCC 59.400 55.000 0.00 0.00 0.00 4.85
1863 1903 6.245408 ACTAGGCAGTGAATTTGAAATGGTA 58.755 36.000 0.00 0.00 32.25 3.25
1864 1904 5.079643 ACTAGGCAGTGAATTTGAAATGGT 58.920 37.500 0.00 0.00 32.25 3.55
1949 2094 9.013229 TCAGCAAGTTCACAGTAAATCAAATAT 57.987 29.630 0.00 0.00 0.00 1.28
1953 2098 5.588246 TGTCAGCAAGTTCACAGTAAATCAA 59.412 36.000 0.00 0.00 0.00 2.57
1957 2102 5.822519 AGAATGTCAGCAAGTTCACAGTAAA 59.177 36.000 0.00 0.00 0.00 2.01
2164 2309 4.873746 AGCAGTAACACACTCACATACT 57.126 40.909 0.00 0.00 34.26 2.12
2188 2333 0.792640 ATCAACTTCTCAACGCTGCG 59.207 50.000 21.91 21.91 0.00 5.18
2194 2339 8.857216 CAGCAAATTATCAATCAACTTCTCAAC 58.143 33.333 0.00 0.00 0.00 3.18
2222 2367 4.946157 CCAAGGCATGAGAGAAACATAACT 59.054 41.667 0.00 0.00 0.00 2.24
2235 2384 1.659233 CGCAAACACCAAGGCATGA 59.341 52.632 0.00 0.00 0.00 3.07
2236 2385 1.373246 CCGCAAACACCAAGGCATG 60.373 57.895 0.00 0.00 0.00 4.06
2240 2389 2.184167 ACGACCGCAAACACCAAGG 61.184 57.895 0.00 0.00 0.00 3.61
2245 2394 1.126113 CACTATCACGACCGCAAACAC 59.874 52.381 0.00 0.00 0.00 3.32
2252 2401 0.923403 CATGTGCACTATCACGACCG 59.077 55.000 19.41 0.00 39.73 4.79
2261 2411 4.397420 ACATCAAAAGTCCATGTGCACTA 58.603 39.130 19.41 4.84 29.36 2.74
2324 2474 4.713321 CCCAGAGAAAACCCATTCAATCAT 59.287 41.667 0.00 0.00 0.00 2.45
2328 2478 3.893753 TCCCAGAGAAAACCCATTCAA 57.106 42.857 0.00 0.00 0.00 2.69
2350 2500 3.120408 CCAGTGTGAAGAAAGAGCATTCG 60.120 47.826 0.00 0.00 34.46 3.34
2375 2525 4.468713 TGTGAAAAATGGTCAGATGGTCA 58.531 39.130 0.00 0.00 0.00 4.02
2376 2526 4.520492 ACTGTGAAAAATGGTCAGATGGTC 59.480 41.667 0.00 0.00 0.00 4.02
2377 2527 4.279169 CACTGTGAAAAATGGTCAGATGGT 59.721 41.667 0.32 0.00 0.00 3.55
2378 2528 4.520111 TCACTGTGAAAAATGGTCAGATGG 59.480 41.667 8.27 0.00 0.00 3.51
2379 2529 5.471116 TCTCACTGTGAAAAATGGTCAGATG 59.529 40.000 12.16 0.00 0.00 2.90
2381 2531 5.034852 TCTCACTGTGAAAAATGGTCAGA 57.965 39.130 12.16 0.00 0.00 3.27
2382 2532 5.704515 AGATCTCACTGTGAAAAATGGTCAG 59.295 40.000 12.16 0.00 0.00 3.51
2414 2564 5.878406 TTCTCCTTTCTGTTCAGAGAAGT 57.122 39.130 15.85 0.00 38.36 3.01
2443 2595 7.014230 ACCAATTTAGTCAAAACTATGTGTGCT 59.986 33.333 0.00 0.00 37.81 4.40
2447 2599 9.607285 GTACACCAATTTAGTCAAAACTATGTG 57.393 33.333 0.00 0.00 37.81 3.21
2495 2647 6.304356 TCCAATGAAAGATGAACGATATGC 57.696 37.500 0.00 0.00 0.00 3.14
2508 2660 7.977853 CCCAGTTTTATGAAGATCCAATGAAAG 59.022 37.037 0.00 0.00 0.00 2.62
2509 2661 7.093377 CCCCAGTTTTATGAAGATCCAATGAAA 60.093 37.037 0.00 0.00 0.00 2.69
2527 2679 3.525800 AAGCTCACAATACCCCAGTTT 57.474 42.857 0.00 0.00 0.00 2.66
2552 2704 2.039480 TCTGCTGTTTCTGATGCCTCTT 59.961 45.455 0.00 0.00 0.00 2.85
2560 2712 4.548451 AGATGATGTCTGCTGTTTCTGA 57.452 40.909 0.00 0.00 35.31 3.27
2579 2731 3.131223 CCTCTTTCCTGAAGTATCGCAGA 59.869 47.826 0.00 0.00 37.55 4.26
2591 2743 5.707298 TCTGTTAATTGCTTCCTCTTTCCTG 59.293 40.000 0.00 0.00 0.00 3.86
2594 2746 7.301789 GTTCTCTGTTAATTGCTTCCTCTTTC 58.698 38.462 0.00 0.00 0.00 2.62
2605 2757 3.932710 TGGCTAGCGTTCTCTGTTAATTG 59.067 43.478 9.00 0.00 0.00 2.32
2606 2758 4.184629 CTGGCTAGCGTTCTCTGTTAATT 58.815 43.478 9.00 0.00 0.00 1.40
2607 2759 3.195825 ACTGGCTAGCGTTCTCTGTTAAT 59.804 43.478 9.00 0.00 0.00 1.40
2608 2760 2.561419 ACTGGCTAGCGTTCTCTGTTAA 59.439 45.455 9.00 0.00 0.00 2.01
2609 2761 2.163815 GACTGGCTAGCGTTCTCTGTTA 59.836 50.000 9.00 0.00 0.00 2.41
2610 2762 0.969894 ACTGGCTAGCGTTCTCTGTT 59.030 50.000 9.00 0.00 0.00 3.16
2611 2763 0.528470 GACTGGCTAGCGTTCTCTGT 59.472 55.000 9.00 4.43 0.00 3.41
2612 2764 0.179124 GGACTGGCTAGCGTTCTCTG 60.179 60.000 9.00 1.03 0.00 3.35
2613 2765 1.658686 CGGACTGGCTAGCGTTCTCT 61.659 60.000 9.00 0.00 0.00 3.10
2614 2766 1.226717 CGGACTGGCTAGCGTTCTC 60.227 63.158 9.00 0.28 0.00 2.87
2615 2767 1.533469 AACGGACTGGCTAGCGTTCT 61.533 55.000 9.00 0.00 30.29 3.01
2616 2768 1.080025 AACGGACTGGCTAGCGTTC 60.080 57.895 9.00 4.49 30.29 3.95
2617 2769 1.374252 CAACGGACTGGCTAGCGTT 60.374 57.895 9.00 9.14 34.43 4.84
2618 2770 2.261671 CAACGGACTGGCTAGCGT 59.738 61.111 9.00 1.11 0.00 5.07
2619 2771 2.509336 CCAACGGACTGGCTAGCG 60.509 66.667 9.00 0.00 0.00 4.26
2620 2772 1.741770 CACCAACGGACTGGCTAGC 60.742 63.158 6.04 6.04 40.45 3.42
2621 2773 0.389948 GTCACCAACGGACTGGCTAG 60.390 60.000 0.00 0.00 40.45 3.42
2622 2774 1.669440 GTCACCAACGGACTGGCTA 59.331 57.895 0.75 0.00 40.45 3.93
2623 2775 2.426023 GTCACCAACGGACTGGCT 59.574 61.111 0.75 0.00 40.45 4.75
2632 2784 0.318614 CCATTGTTGCCGTCACCAAC 60.319 55.000 0.00 0.00 42.13 3.77
2633 2785 0.753479 ACCATTGTTGCCGTCACCAA 60.753 50.000 0.00 0.00 0.00 3.67
2634 2786 1.152860 ACCATTGTTGCCGTCACCA 60.153 52.632 0.00 0.00 0.00 4.17
2635 2787 1.285641 CACCATTGTTGCCGTCACC 59.714 57.895 0.00 0.00 0.00 4.02
2636 2788 1.169661 TCCACCATTGTTGCCGTCAC 61.170 55.000 0.00 0.00 0.00 3.67
2637 2789 0.251121 ATCCACCATTGTTGCCGTCA 60.251 50.000 0.00 0.00 0.00 4.35
2638 2790 0.451783 GATCCACCATTGTTGCCGTC 59.548 55.000 0.00 0.00 0.00 4.79
2639 2791 0.251121 TGATCCACCATTGTTGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
2640 2792 0.452987 CTGATCCACCATTGTTGCCG 59.547 55.000 0.00 0.00 0.00 5.69
2641 2793 0.819582 CCTGATCCACCATTGTTGCC 59.180 55.000 0.00 0.00 0.00 4.52
2642 2794 0.174162 GCCTGATCCACCATTGTTGC 59.826 55.000 0.00 0.00 0.00 4.17
2643 2795 0.452987 CGCCTGATCCACCATTGTTG 59.547 55.000 0.00 0.00 0.00 3.33
2644 2796 0.327924 TCGCCTGATCCACCATTGTT 59.672 50.000 0.00 0.00 0.00 2.83
2645 2797 0.548031 ATCGCCTGATCCACCATTGT 59.452 50.000 0.00 0.00 0.00 2.71
2646 2798 0.949397 CATCGCCTGATCCACCATTG 59.051 55.000 0.00 0.00 30.49 2.82
2647 2799 0.179009 CCATCGCCTGATCCACCATT 60.179 55.000 0.00 0.00 30.49 3.16
2648 2800 1.453235 CCATCGCCTGATCCACCAT 59.547 57.895 0.00 0.00 30.49 3.55
2649 2801 2.910360 CCATCGCCTGATCCACCA 59.090 61.111 0.00 0.00 30.49 4.17
2650 2802 2.592861 GCCATCGCCTGATCCACC 60.593 66.667 0.00 0.00 30.49 4.61
2651 2803 1.596477 GAGCCATCGCCTGATCCAC 60.596 63.158 0.00 0.00 34.57 4.02
2652 2804 2.824546 GAGCCATCGCCTGATCCA 59.175 61.111 0.00 0.00 34.57 3.41
2653 2805 2.356793 CGAGCCATCGCCTGATCC 60.357 66.667 0.00 0.00 42.97 3.36
2662 2814 1.517242 GGGTGAATCATCGAGCCATC 58.483 55.000 0.00 0.00 0.00 3.51
2663 2815 0.109342 GGGGTGAATCATCGAGCCAT 59.891 55.000 0.00 0.00 0.00 4.40
2664 2816 0.982852 AGGGGTGAATCATCGAGCCA 60.983 55.000 0.00 0.00 0.00 4.75
2665 2817 1.001406 CTAGGGGTGAATCATCGAGCC 59.999 57.143 0.00 0.00 0.00 4.70
2666 2818 1.689273 ACTAGGGGTGAATCATCGAGC 59.311 52.381 0.00 0.00 0.00 5.03
2667 2819 5.336849 GGAATACTAGGGGTGAATCATCGAG 60.337 48.000 0.00 0.00 0.00 4.04
2668 2820 4.527038 GGAATACTAGGGGTGAATCATCGA 59.473 45.833 0.00 0.00 0.00 3.59
2669 2821 4.322801 GGGAATACTAGGGGTGAATCATCG 60.323 50.000 0.00 0.00 0.00 3.84
2670 2822 4.846940 AGGGAATACTAGGGGTGAATCATC 59.153 45.833 0.00 0.00 0.00 2.92
2671 2823 4.844348 AGGGAATACTAGGGGTGAATCAT 58.156 43.478 0.00 0.00 0.00 2.45
2672 2824 4.295905 AGGGAATACTAGGGGTGAATCA 57.704 45.455 0.00 0.00 0.00 2.57
2673 2825 4.202472 CCAAGGGAATACTAGGGGTGAATC 60.202 50.000 0.00 0.00 0.00 2.52
2674 2826 3.722101 CCAAGGGAATACTAGGGGTGAAT 59.278 47.826 0.00 0.00 0.00 2.57
2675 2827 3.120108 CCAAGGGAATACTAGGGGTGAA 58.880 50.000 0.00 0.00 0.00 3.18
2676 2828 2.046729 ACCAAGGGAATACTAGGGGTGA 59.953 50.000 0.00 0.00 0.00 4.02
2677 2829 2.488836 ACCAAGGGAATACTAGGGGTG 58.511 52.381 0.00 0.00 0.00 4.61
2678 2830 2.984989 ACCAAGGGAATACTAGGGGT 57.015 50.000 0.00 0.00 0.00 4.95
2679 2831 4.603094 AAAACCAAGGGAATACTAGGGG 57.397 45.455 0.00 0.00 0.00 4.79
2680 2832 6.728411 ACTAAAAACCAAGGGAATACTAGGG 58.272 40.000 0.00 0.00 0.00 3.53
2681 2833 8.645814 AAACTAAAAACCAAGGGAATACTAGG 57.354 34.615 0.00 0.00 0.00 3.02
2687 2839 8.426489 GGAGTAAAAACTAAAAACCAAGGGAAT 58.574 33.333 0.00 0.00 0.00 3.01
2688 2840 7.147689 GGGAGTAAAAACTAAAAACCAAGGGAA 60.148 37.037 0.00 0.00 0.00 3.97
2689 2841 6.324512 GGGAGTAAAAACTAAAAACCAAGGGA 59.675 38.462 0.00 0.00 0.00 4.20
2690 2842 6.325545 AGGGAGTAAAAACTAAAAACCAAGGG 59.674 38.462 0.00 0.00 0.00 3.95
2691 2843 7.356089 AGGGAGTAAAAACTAAAAACCAAGG 57.644 36.000 0.00 0.00 0.00 3.61
2692 2844 7.431249 GGAGGGAGTAAAAACTAAAAACCAAG 58.569 38.462 0.00 0.00 0.00 3.61
2693 2845 6.039605 CGGAGGGAGTAAAAACTAAAAACCAA 59.960 38.462 0.00 0.00 0.00 3.67
2694 2846 5.532032 CGGAGGGAGTAAAAACTAAAAACCA 59.468 40.000 0.00 0.00 0.00 3.67
2695 2847 5.532406 ACGGAGGGAGTAAAAACTAAAAACC 59.468 40.000 0.00 0.00 0.00 3.27
2696 2848 6.624352 ACGGAGGGAGTAAAAACTAAAAAC 57.376 37.500 0.00 0.00 0.00 2.43
2697 2849 6.262944 GGAACGGAGGGAGTAAAAACTAAAAA 59.737 38.462 0.00 0.00 0.00 1.94
2698 2850 5.764686 GGAACGGAGGGAGTAAAAACTAAAA 59.235 40.000 0.00 0.00 0.00 1.52
2699 2851 5.163216 TGGAACGGAGGGAGTAAAAACTAAA 60.163 40.000 0.00 0.00 0.00 1.85
2700 2852 4.347583 TGGAACGGAGGGAGTAAAAACTAA 59.652 41.667 0.00 0.00 0.00 2.24
2701 2853 3.903090 TGGAACGGAGGGAGTAAAAACTA 59.097 43.478 0.00 0.00 0.00 2.24
2702 2854 2.707257 TGGAACGGAGGGAGTAAAAACT 59.293 45.455 0.00 0.00 0.00 2.66
2703 2855 3.130280 TGGAACGGAGGGAGTAAAAAC 57.870 47.619 0.00 0.00 0.00 2.43
2704 2856 3.860968 TTGGAACGGAGGGAGTAAAAA 57.139 42.857 0.00 0.00 0.00 1.94
2705 2857 3.860968 TTTGGAACGGAGGGAGTAAAA 57.139 42.857 0.00 0.00 0.00 1.52
2706 2858 3.860968 TTTTGGAACGGAGGGAGTAAA 57.139 42.857 0.00 0.00 0.00 2.01
2707 2859 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
2708 2860 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2709 2861 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2710 2862 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2711 2863 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2712 2864 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2713 2865 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2714 2866 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2715 2867 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2716 2868 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2717 2869 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2718 2870 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2719 2871 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2720 2872 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2721 2873 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2722 2874 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2723 2875 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2724 2876 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2725 2877 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2726 2878 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2727 2879 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2728 2880 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2729 2881 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
2730 2882 8.983702 TTAAAGTTAGTACAAAGTTGGGTCAT 57.016 30.769 0.00 0.00 0.00 3.06
2731 2883 8.983702 ATTAAAGTTAGTACAAAGTTGGGTCA 57.016 30.769 0.00 0.00 0.00 4.02
2733 2885 9.850198 TGTATTAAAGTTAGTACAAAGTTGGGT 57.150 29.630 4.48 0.00 34.32 4.51
2763 2915 7.450903 CCTCCGTTCCAAAATAGGTTATCTAT 58.549 38.462 0.00 0.00 40.23 1.98
2764 2916 6.183361 CCCTCCGTTCCAAAATAGGTTATCTA 60.183 42.308 0.00 0.00 0.00 1.98
2765 2917 5.397559 CCCTCCGTTCCAAAATAGGTTATCT 60.398 44.000 0.00 0.00 0.00 1.98
2766 2918 4.820173 CCCTCCGTTCCAAAATAGGTTATC 59.180 45.833 0.00 0.00 0.00 1.75
2767 2919 4.475747 TCCCTCCGTTCCAAAATAGGTTAT 59.524 41.667 0.00 0.00 0.00 1.89
2768 2920 3.845398 TCCCTCCGTTCCAAAATAGGTTA 59.155 43.478 0.00 0.00 0.00 2.85
2769 2921 2.645797 TCCCTCCGTTCCAAAATAGGTT 59.354 45.455 0.00 0.00 0.00 3.50
2770 2922 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
2771 2923 2.238898 ACTCCCTCCGTTCCAAAATAGG 59.761 50.000 0.00 0.00 0.00 2.57
2772 2924 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2773 2925 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2774 2926 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2775 2927 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2776 2928 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2777 2929 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2778 2930 2.905415 TAAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2779 2931 4.439968 CAAATAAGTACTCCCTCCGTTCC 58.560 47.826 0.00 0.00 0.00 3.62
2780 2932 3.869832 GCAAATAAGTACTCCCTCCGTTC 59.130 47.826 0.00 0.00 0.00 3.95
2781 2933 3.370209 GGCAAATAAGTACTCCCTCCGTT 60.370 47.826 0.00 0.00 0.00 4.44
2782 2934 2.169978 GGCAAATAAGTACTCCCTCCGT 59.830 50.000 0.00 0.00 0.00 4.69
2783 2935 2.434702 AGGCAAATAAGTACTCCCTCCG 59.565 50.000 0.00 0.00 0.00 4.63
2784 2936 4.080526 TCAAGGCAAATAAGTACTCCCTCC 60.081 45.833 0.00 0.00 0.00 4.30
2785 2937 5.099042 TCAAGGCAAATAAGTACTCCCTC 57.901 43.478 0.00 0.00 0.00 4.30
2786 2938 4.536489 ACTCAAGGCAAATAAGTACTCCCT 59.464 41.667 0.00 0.00 0.00 4.20
2787 2939 4.844884 ACTCAAGGCAAATAAGTACTCCC 58.155 43.478 0.00 0.00 0.00 4.30
2788 2940 5.488341 TGACTCAAGGCAAATAAGTACTCC 58.512 41.667 0.00 0.00 0.00 3.85
2789 2941 7.173390 AGTTTGACTCAAGGCAAATAAGTACTC 59.827 37.037 13.83 0.00 36.51 2.59
2790 2942 6.998673 AGTTTGACTCAAGGCAAATAAGTACT 59.001 34.615 13.83 3.74 36.51 2.73
2791 2943 7.203255 AGTTTGACTCAAGGCAAATAAGTAC 57.797 36.000 13.83 1.49 36.51 2.73
2792 2944 7.817418 AAGTTTGACTCAAGGCAAATAAGTA 57.183 32.000 13.83 0.00 36.51 2.24
2793 2945 6.715347 AAGTTTGACTCAAGGCAAATAAGT 57.285 33.333 13.83 0.00 36.51 2.24
2794 2946 7.428826 AGAAAGTTTGACTCAAGGCAAATAAG 58.571 34.615 13.83 0.00 36.51 1.73
2795 2947 7.346751 AGAAAGTTTGACTCAAGGCAAATAA 57.653 32.000 13.83 0.00 36.51 1.40
2796 2948 6.959639 AGAAAGTTTGACTCAAGGCAAATA 57.040 33.333 13.83 0.00 36.51 1.40
2797 2949 5.859205 AGAAAGTTTGACTCAAGGCAAAT 57.141 34.783 13.83 0.00 36.51 2.32
2798 2950 6.767524 TTAGAAAGTTTGACTCAAGGCAAA 57.232 33.333 6.94 6.94 0.00 3.68
2799 2951 6.767524 TTTAGAAAGTTTGACTCAAGGCAA 57.232 33.333 0.00 0.00 0.00 4.52
2800 2952 6.959639 ATTTAGAAAGTTTGACTCAAGGCA 57.040 33.333 0.00 0.00 0.00 4.75
2870 3022 9.661563 AGACAACGGTTCTAATGTTATTATTGA 57.338 29.630 0.00 0.00 0.00 2.57
2937 3089 9.679661 TGACCAAGTTTATCAAGAGCAATATAA 57.320 29.630 0.00 0.00 0.00 0.98
2938 3090 9.679661 TTGACCAAGTTTATCAAGAGCAATATA 57.320 29.630 0.00 0.00 0.00 0.86
2939 3091 8.579850 TTGACCAAGTTTATCAAGAGCAATAT 57.420 30.769 0.00 0.00 0.00 1.28
2940 3092 7.994425 TTGACCAAGTTTATCAAGAGCAATA 57.006 32.000 0.00 0.00 0.00 1.90
2941 3093 6.899393 TTGACCAAGTTTATCAAGAGCAAT 57.101 33.333 0.00 0.00 0.00 3.56
2942 3094 6.707440 TTTGACCAAGTTTATCAAGAGCAA 57.293 33.333 0.00 0.00 34.04 3.91
2943 3095 6.321181 AGTTTTGACCAAGTTTATCAAGAGCA 59.679 34.615 0.00 0.00 34.04 4.26
2944 3096 6.739112 AGTTTTGACCAAGTTTATCAAGAGC 58.261 36.000 0.21 0.00 34.04 4.09
2945 3097 8.624776 AGAAGTTTTGACCAAGTTTATCAAGAG 58.375 33.333 0.21 0.00 34.04 2.85
2946 3098 8.519799 AGAAGTTTTGACCAAGTTTATCAAGA 57.480 30.769 0.21 0.00 34.04 3.02
2955 3107 9.936759 TCAAATTTTAAGAAGTTTTGACCAAGT 57.063 25.926 0.00 0.00 0.00 3.16
2996 3148 9.614792 GGCTTAGACTCTCTCCATTTTTATTTA 57.385 33.333 0.00 0.00 0.00 1.40
2997 3149 8.332487 AGGCTTAGACTCTCTCCATTTTTATTT 58.668 33.333 0.00 0.00 0.00 1.40
2998 3150 7.866870 AGGCTTAGACTCTCTCCATTTTTATT 58.133 34.615 0.00 0.00 0.00 1.40
2999 3151 7.444703 AGGCTTAGACTCTCTCCATTTTTAT 57.555 36.000 0.00 0.00 0.00 1.40
3000 3152 6.875972 AGGCTTAGACTCTCTCCATTTTTA 57.124 37.500 0.00 0.00 0.00 1.52
3001 3153 5.770685 AGGCTTAGACTCTCTCCATTTTT 57.229 39.130 0.00 0.00 0.00 1.94
3002 3154 5.770685 AAGGCTTAGACTCTCTCCATTTT 57.229 39.130 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.