>input_sequence_62832
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-------------------------------------------------------------------------ATGAAGC
TGATCGCTGCCTACCTCCTCGCCTATCTGGGTGGGAACTCTTCCCCAAGTGCCGCTGACGTCAAGAACATCCTGGACTCA
GGTAATTCTTCTTTGCTTGGTGCAAGTTATACTGGTTCAGATACTCTTCACTTAGGGATTAGGGATTGCCTCCAGCTTTT
CTTATGGATTGATGTATTTAGCATGATATAAAAGATAAAAT--TTGCTGCACTCTGTTCTGTTGCTGAACATAACATAAC
ATAAATCCAATCTTTGTACTTTCAGTCAGGTCATTGAGTTCTATTATATTTTGAGGTTTCAAATGTACAATAACTTATTG
CTAGTTATGATTATGGTCGCATATCAAAACTTGTCAATTTGGCTACTTCATCAGAGGATGTGAGAGCGAAAAAAATTCTT
ATTGTCTTTGTTATTCATGTGAGAATCTAGTTATGATATTGTTCATATCGTTTGACTTGGAGATTGCTTGTTACAGTTGG
TGCCGAGGCTGATGAAGAAAAGCTTGAGTTCCTTCTGGCTGAACTCAAAGGCAAGGACATCACAGAAGTGATTGCATCTG
GAAGGGAGAAGTTTGCCGCTGTGCCTTCAGGTGGGGGTGCCATTGCTGTGGGAGCTCCAGCTGCTGCATCTGGTGGTGCC
GCCGCACCTGCTGCTGAGTCA---AAGGAGGAGAAGGTTGAAGAGAAGGAAGAATCTGATGAAGTAAGTATTTTTCCACC
TTGCAATGGTTTCTCAGTTACTTTAGTTCTGTGG-CCATAAGTTATTCTAGCTGGACTTACATTATAGCAAGCAACCCAC
ATTCAACTTTGTTCAGCTGTTGTTGTTGCAAGTAGTGACTTGTTAGTTTTGGCACGACAATTTACCATTTCAAATTCACT
GCCTAGTTGCAAGTAGAAGCTAGAATTCCTTCCGCAGCATGCAAATTGTTAAACCTGATCACAT----------------
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---------ACTTATATTTGATTTACTGTGAACTTGCTGACATTCTCGTTTTCTTTATGCAGGACATGGGTTTCAGTCTG
TTCGACTAA-----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G286500
GGAATAACTTGGATTGTTCATGAGTTTTTTTTTTAGCAAACTGTTTATGGGCTGAGTTTTGTTTGAGAAACATTTAAATA
TGGGCTGAGTGGGTACTGTGCTTATG--GAGCCCGGAGATTGTGGCCTTTGGGCTTGCGTT-CGGAGCCCAGAGAAGTCT
CTCCACTGGTCCAGAACCTTCTGAGAGATCGAGTGGTCTCTGATTCGGCCCGATCGCCCGTATATAAAAGCGAAATGGTT
CGACTCATTTGGCTAGAACCCTAGCTCGCGCACGAACCCCC-TCCGCCGCCGACCTCGCGTCTTCTCCTGCGCATCTCGG
AGGT-AGGTTTCCCCC-----AGTCCCATCCTTTCCGCACTCAATTCTGCACCAGGCAAGGTCCCTGCTGCGGCGATCTC
GTTTGAAATCCGTCTTGTTCCGCAGTAGGGGAATTATTTGTTGGATGCGAAGACGAGTGTTCCTGTTTGTTCGTTTTCGT
AGATCTGTGCGGTATAGGTTGCTTAATCGTC-CGTG--TGTGTTGCTTAATTGTTGCTCCGCTAGATCTCTAGCTTGCGC
CTGCGCGCCAGGTTTCAGGAGATCTGATTTCCCCATTTAGAAACACGGCAGGTCATTCCTGCGTGGATTCTTGTTTACCT
AGTGAAAGAAT-----CCTCCGGGGCTTCGAAGGCTAGGATCTAAGATGCACGGGAGGGTCATGTTTGTCATTGTTCTTT
TCATGCAGAAGTGTAATTTACATGCATAACTCCATTCATTCACTCAAATACTCCGATGTTCATCTCTCTAAGATTTCCGA
GTGGGAAATAATTGCTATGGTATTT-------TCGTATCGTAGCCACATGCTTTCTGTTGGCCTTGAGCCCTATTAATTT
TGGCCTTCTGTATTTTTTTGTTTTCCATGTGTCTTGCTGTCGATCTATTTGGATATGACAGTACTCCCA--------TCT
TCAGCATATACTTAGCCTGCCATGCCGTTTAACTGTAATTCCGTTTGTTTTCAGGTGCTTCCTAGTTTCCACGATGAAGC
TGATCGCTGCCTACCTCCTCGCCTATCTGGGTGGGAACTCTTCCCCAAGTGCCGCTGACGTCAAGAACATCCTGGACTCA
GGTAATTCTTCTTTGCTTGGTGCAAGTTATACTGGTTCAGATACTCTTCACTTAGGGATTAGGGATTGCCTCCAGCTTTT
CTTATGGATTGATGTATTTAGCATGATATAAAAGATAAAAT--TTGCTGCACTCTGTTCTGTTGCTGAACATAACATAAC
ATAAATCCAATCTTTGTACTTTCAGTCAGGTCATTGAGTTCTATTATATTTTGAGGTTTCAAATGTACAATAACTTATTG
CTAGTTATGATTATGGTCGCATATCAAAACTTGTCAATTTGGCTACTTCATCAGAGGATGTGAGAGCGAAAAAAATTCTT
ATTGTCTTTGTTATTCATGTGAGAATCTAGTTATGATATTGTTCATATCGTTTGACTTGGAGATTGCTTGTTACAGTTGG
TGCCGAGGCTGATGAAGAAAAGCTTGAGTTCCTTCTGGCTGAACTCAAAGGCAAGGACATCACAGAAGTGATTGCATCTG
GAAGGGAGAAGTTTGCCGCTGTGCCTTCAGGTGGGGGTGCCATTGCTGTGGGAGCTCCAGCTGCTGCATCTGGTGGTGCC
GCCGCACCTGCTGCTGAGTCA---AAGGAGGAGAAGGTTGAAGAGAAGGAAGAATCTGATGAAGTAAGTATTTTTCCACC
TTGCAATGGTTTCTCAGTTACTTTAGTTCTGTGG-CCATAAGTTATTCTAGCTGGACTTACATTATAGCAAGCAACCCAC
ATTCAACTTTGTTCAGCTGTTGTTGTTGCAAGTAGTGACTTGTTAGTTTTGGCACGACAATTTACCATTTCAAATTCACT
GCCTAGTTGCAAGTAGAAGCTAGAATTCCTTCCGCAGCATGCAAATTGTTAAACCTGATCACAT----------------
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---------ACTTATATTTGATTTACTGTGAACTTGCTGACATTCTCGTTTTCTTTATGCAGGACATGGGTTTCAGTCTG
TTCGACTAAGCGCTTCAGTTCCTCCCCCCTACCCTCTGTTTACCCTAGTATCTGTCGTGTGTGGCCTGCCACAACAGCGC
CTGCATAATATCTAGAGACCTAAAGTTCGTGCTATTTTGCTTGGGACAATGTATATGTTTAGTACCTTAGTATGTGAGTG
TGTTACTGCTTCCGCAGCGTTGAGAAGTTGATTGATAATTTGCTGGAGTTATGTTTCTC----TCATGCCTTGGTGTTTG
CGGTCG-TGATAGTGCACATGGACTTTTGATGTTCTTAATGGTTTATCTGGTGAAAGGATCTTGATTTTCTCTATGATTG
AATGGGTTTTCTCTGGGATCGAATGCTCTTTCTTCACACTGGTGTGACCATCTGACCATTTTTCACAGTGAGATCTCACA
CTCACTTCTCTGAACAG--AAAGGAGAATGGAGAAGCACACATAGTTTTGACTAAATTGGTGTACATTTTTTGACTAATA
TTTCATGCATATCGTTCATCTTTCATTGGATCTTCATAAAACTGGGGTATTGTGAGCTTTGACAAGAGGCATCAGAAACA
GCAGACATCATCTGCGATACTTCAGGAAAGAGGAAGCAATTAACAGAGAACGCTAGCCAGTCCGTTGGTGACGGCAACAA
TGGTGGATCAGGCGATGGCTCGATGATTCACCCCTAGTATTCCCTTGGTTTTTAGTTTTTACTCCCTCCGTTCCAAAATA
GATGACCCAACTTTGTACTAACTTTAATACAAAAATAGATAACCTATTTTGGAACGGAGGGAGTACTTATTTGCCTTGAG
TCAAACTTTCTAAATATTAACGAAGTTTATATAAAAAAATAATAATATCCAAAATACCAATTCAATAATAACATTAGAAC
CGTTGTCTAATATATTTTCATACCATATATATTTGTTATAATGGAAGTTTATATTGCTCTTGATAAACTTGGTCAAAACT
TCTTAAAATTTGATATAGATGTGAAGTTAAATAAAAATGGAGAGAGTCTAAGCCTT
>chr1A_40
---------------------------------------ACTGTTTATGAGCTGATTTTTTTTT---AGAA--TTAAATA
CGGGCCAAGTGGGCACTGTGGTTCTGGATCCG--GGAGATTGTGGCCTTTGGGCTTGCGTTTCGGAGCCCGGAGAAGTCG
CTCCACTGATCCAGAACCTTCTGAGAGATCGAGTGGCCTCTGATTCGGCCCGATTGCCCGTATATAAAAGCGAAATGGTT
CGGCTCATTTGGCTAGAACCCTAGCTCACGCACGAAGCCCC-TCCGCCGCCGTCCTCGCGTCTTCTCCTGCGCATCTCGG
AGGT-AGGCTTCCCCC-----AATCCCGTCCTTTTCGCACTCAATTCTGCGCCAGGCAAGGGCCCTGCTGCAGCGATCCC
GTTGGAAATCCGTCTTGTTCTGCGGTAGGGGAATT-TTTGTTGGATGCGGAGATGAGTGTTCCTGTTTGTTCGTTTTCGT
AGATCTGTGCGGTATAGGTTGCTTAATTGTCGCGTG--TATCTTGCTTAGTTGTTGCGCCGCTAGATCTCTAGCTTGCGC
CTGCGCGCCGGGTTTCAGGAGATCTGATTTCCCCATATAGAAACACGGCAGGCCATTACTGTGT-GATTCTTGTTTACCC
AGTGAAGATGCAGAAACCCCCGGGTCTTCGAAGGCTCGAATCTAAGATGCACGGGGG----ATGTTTATTATTGTTCTTT
TCGTGCACAACTTCAATTTACGTGCATAACTCCATTCATTCATTCAGATCCTCCGATGTTCATCTCT----GATTTCCGA
GTGGAAAATAATTGCTATGGTATTTAGTGATTTCATATCGTAGCCACTTGCTTTCATTTGGCCTTGAACCCTAGTAATTT
TGGCATTCTGTGTTTTTGA-TTTTCCATGCGTCTTGCTGTCGATCTATTTGGATCTGACAGTACTCCCA--------TCT
TGAGCATATACTTAGCCTTCCATGCCGTTTAACTTTAATTCTGTTTGTTTTCAGGTGCTTCCTAGTTTCCACGATGAAGC
TGATCGCAGCCTACCTTCTCGCCTATCTGGGCGGGAACTCTTCCCCAAGTGCCGCTGACGTCAAGAACATCCTTGACTCA
GGTAATTCTTCTTTGTTGGTTTTAAGTTATACTGGCTCAGATACTCTCTACTTGGGTAA-------TGCCTCTAGCTTCC
CTTATGGTTTGACCTATTTAGCATGGTATAAAAGATAAAATATTTGCTGCACTACTTGCTGTTTGCTGAAT----ATAAC
ATAAATCCAATCTTTTCACTTCCAGTCAGGTCATTGAGTACTATTATATTCTGAGGTTTCAAATATGCAATAACTTATTG
CTTGTTATGATTATGGTCGCATATCAAAACTTGTCAATTTGGGTCCTTCATGAGAGGATGTGAGACCAAAAAAAATGCTT
ATTGTATTTGTTATTCATGTGAGAATCTAGTTATGATATTGTGCATATCATCTGACTTGGAAATTGCTTGTTACAGTTGG
TGCTGAGGCTGATGAAGAAAAGCTTGAGTTCCTTCTTGCTGAACTCAAAGGCAAGGACATCACAGAAGTGATTGCATCTG
GAAGGGAGAAGTTTGCCGCTGTGCCTTCAGGTGGGGGTGCCATTGCTGTGGGAGCTCCAGCTGCTGCATCTGGTGGTGCC
GCAGCACCTGCTGCTGAGTCAAAGAAGGAGGAGAAGGTTGAAGAGAAGGAAGAATCTGATGAAGTAAGTATTTTTCCACC
TTGCAATGGTTTCTCAGTCACTTTAGTTCTGTGG-CCTTAAGTTATTCTAGCTGGACTTACATTGTAGCAAGCAACCCAC
ATTCAACTTTGTTCAGCTGTTGTTGTTGCAAGTAGTGACTTTTTAGTTTTGGCATGACAAGTG-CCATTTCAAATTCACT
GCCTAGTTGCAAGTAGAAGCTAGAATTCCTCCCGCAGCATGCAAATTGTTAAACCTGATCACATACTCCCTCCGTTCGGA
ATTAGTTGTCTCGAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATCCATTTCTGCGACAAGTAATTCTGAAC
AGAGGGAGTACTTGTATGTGAATTATTGTGAACTTGCTGACATTCTCGTTTTCTTTATGCAGGACATGGGTTTCAGTCTG
TTCGACTAAGCGCTTCAGTTCCTCCCCCCTACCCTCTGTTTACCCTAGTATCTGTCGTGTGTGGCCTGCCACAACAGCGC
CTGCATAATATCTAGAGACCTGAAGTTCGTGCTATTTTGCTTGGGACAATGTATATGTTTAGTACCTTCGTATGTGAGTG
TGTTACTGCTTCTGCAGCCTTGAGCAGTTGATTGATAAATTGGTGTTATGTTTC-TCGC----ATATGTCTTGATGTTTG
TGGTCGATGAAAGTGCACATGATCTTTTGATGTTCTGAATGGTTTATCTGGTGAAAGGATCTTGATTTTCTCTGTGACTG
AATGGGTTTTCTCTGGGATGGAATGCCCTTTCCTCACACTGGTGACTATA--TGACCATTTTTCACAGTGAGATCTCACA
CTCGCTTCTCTGAACAGATAAAGGAGAATGGAGATGCAAACATAGATTTGAATAAATTGGTGGACACTTTTTGACAAATA
TTTCATTCATATCATTCATTATTCATTGGATCTTCATACAACTGGGGTATTGTGAGCTTTGACGAGAGGCACCAGAAACA
GCAGACATCACCTGCGATACTTGAGCAAAGAGGAAG--------------------------------------------
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>chr1D_40
---------------------------------------ACTGTTTATGACCTGAGTTTTTTTTTTGAGAA--TTAAATA
TGGGCTGAGTGGGTACTCTGGTTCTGGAGAGCCCGGAGATTGTGGCCTTTGGGCTTGCGTT-CGGAGGCCAGAGAAGTTT
CCCCACTGATCCAGAACCA-----------GAGTGGTCGCTGATTCGGCCCGACTGCCCGTATATAAAAGCGAAATGGTT
CGGCTCATTTGGCTAGAACCCTAG-TCGCGCACGAACCCCCCTCCGCCGCCGACCTCGCGTCTTCTCCTGTGCATCTCGG
AGGTAAGGCTTCCCCCAATCCAATCCCGTCCTTTTCGCACTCAATTCTGCGCCAGGCAAGGCCCCTGCTGCAGCGATCTC
GTTGGAAATCCGTGTTGTTCTGCGGTAGGGGAATTATTTGTTGGATGCCGAGACGAGTGTCCCTGATTGTT---TTTCGT
AGATCTGTGCGGTATAGGTTGCTTGGTTGTCGCGTATATATGTTGCTTAATTGTTGCTCCGCTAGATCTCTAGCTTGCAC
CTGCGCGCCAGGTTTCAGGAGATCTGATTTCCCCATTTAGAAACACGGCAGGTCATTCCTGCGTGGATTCTTGTTTACCT
AGTGAAGAAACC---ACCTCCGGGGCTTCAAAGGCCCGACTCTAAGATGCACGGGAGGGTCCTGTTTATTATTGTTCTTT
TCATCCATAACTG-AATTTACATGCATAACTCCATTCATTCACTCAAATCCTCCGATGTTCATCTCT----CATTTCCGA
GTGGGAAATAATTGCTATGGTATTTAGTGATTTCATGTCGTAGCTACGTGCTCTCTTTTGGCCTTGAACCCTAGTAATTT
TGGCACTCTGTATTTTTGA-TTTTCCATGTTTCTTGCTGTTGATCTTGTTGGATCTGACAGTACGCCCACTCCCATCTTT
TCACCATATAGTTAGCCCGCCATGGCATTTAACTGTAATTCTGTTTGTTTTCAGGTGCTTCTTGGTTTCCACGATGAAGC
TGATCGCTGCCTACCTCCTCGCCTATCTTGGTGGGAACTCTTCCCCAAGTGCCGCTGATGTCAAGAACATCCTGGACTCA
GGTAATTCTTCTTTGTTGGGTGCAAGTTATACTGGTTCAGATACACTTTACTAGGGCAA-------TGCCTCTAGCTTTT
CTTATGGTTGACG--ATTTAGCATGGTATAAAAGATAAAATATTTGCTGCACTCTTTTCTGTTGCTGAATATAACATAA-
----ATCAAATCTTTTCACTTTCAGTCAGGTTATTGAG--------------------------------TAACTTATTG
CTAGTTATGATTATGGTCGCATATTGAAACTTTTCAATTTGGGTCCTTCATGAGAGGATGTGAGACC-AAAAAAATGCTT
ATTGCCTTTGTTATTCATGTGAGAATCTAGTTATGATATTGTGCATATCATTTGACTTGGAAATTGCTTGTTACAGTTGG
TGCTGAGGCTGATGAAGAAAAGCTTGAGTTCCTTCTTGCTGAACTGAAAGGCAAGGACATCACAGAAGTGATTGCATCTG
GAAGGGAGAAGTTTGCCGCTGTGCCTTCAGGTGGGGGTGCCATTGCTGTGGGAGCTCCAGCTGCTGCATCTGGTGGTGGC
GCAGCACCTGCTGCTGAGTCA---AAGGAGGAGAAGGTTGAAGAGAAGGAAGAATCTGATGAAGTAAGTATTTTTCCACC
TTGCAATGGTTTCTCAGTTACTTTAGTTCTGCGCTCCATAAGTTATTCTAGCTGGACTTACATTATAGCAAGAATCCAAC
ATTCAACTTTGTTCAACTGTTGTTGTTGCAAGTAGCGACTTGTTAGTTTTGGCACAACAATTG-CCATTTTGAATTCACT
GCCTAGTCGCAAGTAGAAGCTGGCATTCCTTCCGTAGCATGCAAATTGTTAAGACCTGATAACTT---------------
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-----------TTGTGTGTGAATTACTGTGACCTTGCTGACATTCTCGTTTTCTTTATGCAGGACATGGGTTTCAGTCTG
TTCGACTAAGCACTTCAGTCACTCCCCCCTACCCTCTCTTTACCCTAGTATCTGTCGCCTGTGGCCTGCTACAACGGCGC
CTGCATA--ATCTAGAGACCTAAAGTTCATGCTATTTTGCTTGGGACAATGTATATGTCTAGTACCTTCGTATGCGAGTG
TGTGACTGCTTCTGCAGCCTTGAGAAGTTGATTGATAATTCGCTGGTGTTATGTTTCTTGCATATATCTCGTGATGTTTG
-------------------TGATCTTTTGATTTTCTTAATGGTTGATGTGGTGAAAGGATCTTGATTTTCTCT-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------S---SS--S-SSS-------
--------------------S--S--------------------------------------------------------
--------S---------------------------------------------S-------------------------
--S-----------------------------------------------------------------------------
--------S-------------S----S------S---------------S----------S---------S--------
---S----------------S--S-------------------------S------------------------------
---------------------------S-----------S----------------------------------------
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------SS--S-------------------------S-S----------------------------S-S----------
-------S--S--S-----------------------------------S-----------------SSSS---------
----------------------------------S------------S--------S----------S-----S------
----S------------SSS----------------------------------S-------------------------
-----------------------------------------S--------------------------------------
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---------------S-S------------------------------S----S--S-SSSSSSSS------S-------
-------S----SS-----------S-----------------------------S-------------S----------
---------------SS----------------------S----------S-------------S-S-------------
------------------------------------------S-S------S-------------S-S--------S---
------------------------------------------S------S-----------S------------------
---S--------------------------------S-------------------------------------------
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--S-----------------------------------------------------------------------------
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--------------------------------------------------------------SS----------------
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-------------S---S---S----------------------------------------------------------
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--------------------------------------------------------------------S-----------
------------S-----S---------------------------S----------------SS---S----S------
S---------S----------SS--------------------------------------------------S---S--
-------------------S------S-----S-----------SSSSS-SS----------------------------
---S------------------------------S---S------S-----S----------S---S--------S----
------S------S-----SS-----------------S------------------------S-------S--------
----------S-----------S--S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_710
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--------------------------------------------------ACGGGAGGGTCATGTTTGTC----------
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>reverse_2815
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--------------ATGGCTCGATGATTCACCCC----------------------------------------------
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