Multiple sequence alignment - TraesCS1B01G285000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G285000 chr1B 100.000 2841 0 0 1 2841 495417369 495414529 0.000000e+00 5247
1 TraesCS1B01G285000 chr1D 91.914 2795 135 48 116 2841 371342820 371340048 0.000000e+00 3825
2 TraesCS1B01G285000 chr1A 92.664 2072 74 28 596 2595 470687163 470685098 0.000000e+00 2913
3 TraesCS1B01G285000 chr1A 94.712 416 17 3 118 533 470687586 470687176 2.390000e-180 641
4 TraesCS1B01G285000 chr1A 85.926 270 22 9 2580 2841 470685077 470684816 1.000000e-69 274
5 TraesCS1B01G285000 chr3A 90.476 189 15 2 1653 1841 624829963 624830148 2.190000e-61 246
6 TraesCS1B01G285000 chr3D 89.947 189 16 2 1653 1841 481702741 481702926 1.020000e-59 241
7 TraesCS1B01G285000 chr3B 89.947 189 16 2 1653 1841 643257326 643257511 1.020000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G285000 chr1B 495414529 495417369 2840 True 5247 5247 100.000000 1 2841 1 chr1B.!!$R1 2840
1 TraesCS1B01G285000 chr1D 371340048 371342820 2772 True 3825 3825 91.914000 116 2841 1 chr1D.!!$R1 2725
2 TraesCS1B01G285000 chr1A 470684816 470687586 2770 True 1276 2913 91.100667 118 2841 3 chr1A.!!$R1 2723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 476 0.106708 GAGCTGTGACACCAGTCCAA 59.893 55.000 2.45 0.0 44.33 3.53 F
691 729 1.125021 CAACTAGTTGCGCTTCAGACG 59.875 52.381 22.03 0.0 33.45 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1573 0.809385 CTAGGACCTCGAAGAACGCA 59.191 55.0 0.0 0.0 42.26 5.24 R
2651 2808 0.033920 GGCCTGCACCCAAGAAAAAG 59.966 55.0 0.0 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.508642 TTTTCCTTCCAAACAAATTAAACAAGT 57.491 25.926 0.00 0.00 0.00 3.16
38 39 9.508642 TTTCCTTCCAAACAAATTAAACAAGTT 57.491 25.926 0.00 0.00 0.00 2.66
39 40 9.508642 TTCCTTCCAAACAAATTAAACAAGTTT 57.491 25.926 3.47 3.47 36.63 2.66
40 41 9.157104 TCCTTCCAAACAAATTAAACAAGTTTC 57.843 29.630 0.81 0.00 34.23 2.78
41 42 9.161629 CCTTCCAAACAAATTAAACAAGTTTCT 57.838 29.630 0.81 0.00 34.23 2.52
42 43 9.971744 CTTCCAAACAAATTAAACAAGTTTCTG 57.028 29.630 0.81 0.00 34.23 3.02
43 44 9.712305 TTCCAAACAAATTAAACAAGTTTCTGA 57.288 25.926 0.81 0.00 34.23 3.27
44 45 9.712305 TCCAAACAAATTAAACAAGTTTCTGAA 57.288 25.926 0.81 0.00 34.23 3.02
76 77 9.527157 TCTAAATTTACCAACAAATCTGATGGA 57.473 29.630 1.77 0.00 46.03 3.41
79 80 9.492973 AAATTTACCAACAAATCTGATGGAAAG 57.507 29.630 1.77 0.00 46.03 2.62
80 81 7.595819 TTTACCAACAAATCTGATGGAAAGT 57.404 32.000 1.77 0.00 46.03 2.66
81 82 8.698973 TTTACCAACAAATCTGATGGAAAGTA 57.301 30.769 1.77 0.00 46.03 2.24
82 83 6.824305 ACCAACAAATCTGATGGAAAGTAG 57.176 37.500 1.77 0.00 46.03 2.57
83 84 6.306987 ACCAACAAATCTGATGGAAAGTAGT 58.693 36.000 1.77 0.00 46.03 2.73
84 85 6.431234 ACCAACAAATCTGATGGAAAGTAGTC 59.569 38.462 1.77 0.00 46.03 2.59
85 86 6.430925 CCAACAAATCTGATGGAAAGTAGTCA 59.569 38.462 0.00 0.00 46.03 3.41
86 87 7.040478 CCAACAAATCTGATGGAAAGTAGTCAA 60.040 37.037 0.00 0.00 46.03 3.18
87 88 8.517878 CAACAAATCTGATGGAAAGTAGTCAAT 58.482 33.333 0.00 0.00 0.00 2.57
88 89 9.739276 AACAAATCTGATGGAAAGTAGTCAATA 57.261 29.630 0.00 0.00 0.00 1.90
89 90 9.911788 ACAAATCTGATGGAAAGTAGTCAATAT 57.088 29.630 0.00 0.00 0.00 1.28
214 215 9.725019 ACATAGACAAGTCATAAGAAACATCAA 57.275 29.630 2.72 0.00 0.00 2.57
227 228 5.316987 AGAAACATCAACCTCAAACCCTAG 58.683 41.667 0.00 0.00 0.00 3.02
230 231 5.319043 ACATCAACCTCAAACCCTAGAAA 57.681 39.130 0.00 0.00 0.00 2.52
397 398 5.583854 TGAGTGAAGAGAGCTTTATGCATTC 59.416 40.000 3.54 0.00 45.94 2.67
473 474 0.322975 ATGAGCTGTGACACCAGTCC 59.677 55.000 2.45 0.00 44.33 3.85
474 475 1.048160 TGAGCTGTGACACCAGTCCA 61.048 55.000 2.45 1.49 44.33 4.02
475 476 0.106708 GAGCTGTGACACCAGTCCAA 59.893 55.000 2.45 0.00 44.33 3.53
552 553 5.112129 ACCAAAAGGAGTTACTGTGAACT 57.888 39.130 0.00 0.00 42.42 3.01
571 572 3.950397 ACTCCAAGTGAACACAAACTCA 58.050 40.909 7.68 0.00 0.00 3.41
640 677 4.122046 ACGTTCAACTTAGTTACGGCTTT 58.878 39.130 19.96 1.73 33.52 3.51
641 678 5.288804 ACGTTCAACTTAGTTACGGCTTTA 58.711 37.500 19.96 0.00 33.52 1.85
667 704 8.534333 TTCTGATGCATCGGTTTATAAGATAC 57.466 34.615 30.03 0.00 34.76 2.24
668 705 7.896811 TCTGATGCATCGGTTTATAAGATACT 58.103 34.615 30.03 0.00 34.76 2.12
669 706 9.020731 TCTGATGCATCGGTTTATAAGATACTA 57.979 33.333 30.03 7.44 34.76 1.82
691 729 1.125021 CAACTAGTTGCGCTTCAGACG 59.875 52.381 22.03 0.00 33.45 4.18
726 765 6.767524 AAAACTTGTTACACTTGATCACCA 57.232 33.333 0.00 0.00 0.00 4.17
1509 1573 1.269012 TTCCCCTGTTATTCGTCGGT 58.731 50.000 0.00 0.00 0.00 4.69
1616 1681 4.297299 ACCATTTTTGCTATGCGATCTG 57.703 40.909 0.00 0.00 0.00 2.90
1617 1682 3.047796 CCATTTTTGCTATGCGATCTGC 58.952 45.455 3.07 3.07 46.70 4.26
1618 1683 3.243301 CCATTTTTGCTATGCGATCTGCT 60.243 43.478 10.16 0.88 46.63 4.24
1619 1684 4.023792 CCATTTTTGCTATGCGATCTGCTA 60.024 41.667 10.16 0.00 46.63 3.49
1641 1710 1.266989 CTGACCTTTTTCTCCGTTGGC 59.733 52.381 0.00 0.00 0.00 4.52
1647 1716 0.472471 TTTTCTCCGTTGGCTCTGGT 59.528 50.000 0.00 0.00 0.00 4.00
1648 1717 1.344065 TTTCTCCGTTGGCTCTGGTA 58.656 50.000 0.00 0.00 0.00 3.25
1649 1718 1.568504 TTCTCCGTTGGCTCTGGTAT 58.431 50.000 0.00 0.00 0.00 2.73
2008 2093 2.795470 GCGATTCGGAACCAGTAATCTC 59.205 50.000 8.34 0.00 0.00 2.75
2100 2189 4.329462 AGGAAGAAACAGAGTCAGTCAC 57.671 45.455 0.00 0.00 0.00 3.67
2186 2282 0.887247 TGGCATTTCACATCCCGTTG 59.113 50.000 0.00 0.00 0.00 4.10
2187 2283 0.173255 GGCATTTCACATCCCGTTGG 59.827 55.000 0.00 0.00 0.00 3.77
2189 2285 1.133025 GCATTTCACATCCCGTTGGAG 59.867 52.381 0.00 0.00 46.08 3.86
2190 2286 2.710377 CATTTCACATCCCGTTGGAGA 58.290 47.619 0.00 0.00 46.08 3.71
2191 2287 2.940994 TTTCACATCCCGTTGGAGAA 57.059 45.000 0.00 0.00 46.08 2.87
2193 2289 1.052617 TCACATCCCGTTGGAGAACA 58.947 50.000 0.00 0.00 46.08 3.18
2221 2320 3.340814 AATGTTCTTCGATGCTGGAGT 57.659 42.857 0.00 0.00 0.00 3.85
2261 2360 0.743345 ACAAGCGTCCTTTATCGGCC 60.743 55.000 0.00 0.00 0.00 6.13
2262 2361 0.462047 CAAGCGTCCTTTATCGGCCT 60.462 55.000 0.00 0.00 0.00 5.19
2301 2400 0.957395 GTCCTGTCGAGTCACCCGTA 60.957 60.000 0.00 0.00 0.00 4.02
2376 2475 3.333189 CGGCGGTGATGCAGATCG 61.333 66.667 0.00 0.00 36.28 3.69
2403 2506 4.227134 CCTGGGCTCGCGTGCTAT 62.227 66.667 29.41 0.00 0.00 2.97
2404 2507 2.728180 CTGGGCTCGCGTGCTATA 59.272 61.111 29.41 16.21 0.00 1.31
2405 2508 1.661821 CTGGGCTCGCGTGCTATAC 60.662 63.158 29.41 18.32 0.00 1.47
2452 2559 4.379793 GTGAATTACGAGCTGCAAAAACAG 59.620 41.667 1.02 0.00 40.80 3.16
2464 2571 8.786826 AGCTGCAAAAACAGTAGTAATATACA 57.213 30.769 1.02 0.00 39.96 2.29
2485 2604 1.153568 CACCATCGTCAGCGTCCAT 60.154 57.895 0.00 0.00 39.49 3.41
2579 2698 2.870435 GCTCTTTCTGGCAAGTTCCGTA 60.870 50.000 0.00 0.00 0.00 4.02
2651 2808 1.921243 ACGTGCTTTTGCCAAGTTTC 58.079 45.000 0.00 0.00 46.87 2.78
2652 2809 1.476488 ACGTGCTTTTGCCAAGTTTCT 59.524 42.857 0.00 0.00 46.87 2.52
2653 2810 2.094234 ACGTGCTTTTGCCAAGTTTCTT 60.094 40.909 0.00 0.00 46.87 2.52
2657 2814 5.323900 GTGCTTTTGCCAAGTTTCTTTTTC 58.676 37.500 0.00 0.00 46.87 2.29
2658 2815 5.122239 GTGCTTTTGCCAAGTTTCTTTTTCT 59.878 36.000 0.00 0.00 46.87 2.52
2669 2826 1.039856 TCTTTTTCTTGGGTGCAGGC 58.960 50.000 0.00 0.00 0.00 4.85
2678 2835 1.819753 TGGGTGCAGGCCTAGATTAT 58.180 50.000 3.98 0.00 0.00 1.28
2679 2836 2.984672 TGGGTGCAGGCCTAGATTATA 58.015 47.619 3.98 0.00 0.00 0.98
2680 2837 2.906389 TGGGTGCAGGCCTAGATTATAG 59.094 50.000 3.98 0.00 0.00 1.31
2681 2838 2.237392 GGGTGCAGGCCTAGATTATAGG 59.763 54.545 3.98 0.00 37.75 2.57
2682 2839 3.173965 GGTGCAGGCCTAGATTATAGGA 58.826 50.000 3.98 0.00 36.85 2.94
2683 2840 3.196685 GGTGCAGGCCTAGATTATAGGAG 59.803 52.174 3.98 0.00 36.85 3.69
2736 2899 2.988010 TACAGGAAGCGATGATTGCT 57.012 45.000 0.16 0.16 46.68 3.91
2749 2912 2.715046 TGATTGCTACTCCAAAGCCTG 58.285 47.619 0.00 0.00 39.30 4.85
2750 2913 1.403323 GATTGCTACTCCAAAGCCTGC 59.597 52.381 0.00 0.00 39.30 4.85
2753 2916 2.434185 TACTCCAAAGCCTGCGCG 60.434 61.111 0.00 0.00 41.18 6.86
2760 2923 0.664166 CAAAGCCTGCGCGAAATGTT 60.664 50.000 12.10 0.00 41.18 2.71
2764 2927 1.785321 CCTGCGCGAAATGTTACGT 59.215 52.632 12.10 0.00 0.00 3.57
2765 2928 0.165079 CCTGCGCGAAATGTTACGTT 59.835 50.000 12.10 0.00 0.00 3.99
2779 2942 8.539117 AAATGTTACGTTAGGTAGGTATAGGT 57.461 34.615 0.00 0.00 31.46 3.08
2806 2969 2.029244 GGATACATGTGAAACGAGCACG 59.971 50.000 9.11 0.76 42.39 5.34
2822 2985 2.281234 AGCACGATGTTTTGTTTTTGCG 59.719 40.909 0.00 0.00 0.00 4.85
2832 2995 7.227992 TGTTTTGTTTTTGCGAGGATAAAAG 57.772 32.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.508642 ACTTGTTTAATTTGTTTGGAAGGAAAA 57.491 25.926 0.00 0.00 0.00 2.29
12 13 9.508642 AACTTGTTTAATTTGTTTGGAAGGAAA 57.491 25.926 0.00 0.00 0.00 3.13
13 14 9.508642 AAACTTGTTTAATTTGTTTGGAAGGAA 57.491 25.926 0.00 0.00 30.88 3.36
14 15 9.157104 GAAACTTGTTTAATTTGTTTGGAAGGA 57.843 29.630 0.00 0.00 32.01 3.36
15 16 9.161629 AGAAACTTGTTTAATTTGTTTGGAAGG 57.838 29.630 0.00 0.00 32.01 3.46
16 17 9.971744 CAGAAACTTGTTTAATTTGTTTGGAAG 57.028 29.630 0.00 0.00 32.01 3.46
17 18 9.712305 TCAGAAACTTGTTTAATTTGTTTGGAA 57.288 25.926 0.00 0.00 32.01 3.53
18 19 9.712305 TTCAGAAACTTGTTTAATTTGTTTGGA 57.288 25.926 0.00 0.00 32.01 3.53
50 51 9.527157 TCCATCAGATTTGTTGGTAAATTTAGA 57.473 29.630 11.90 0.00 42.41 2.10
53 54 9.492973 CTTTCCATCAGATTTGTTGGTAAATTT 57.507 29.630 11.90 0.00 42.41 1.82
54 55 8.650490 ACTTTCCATCAGATTTGTTGGTAAATT 58.350 29.630 11.90 5.04 42.41 1.82
55 56 8.193953 ACTTTCCATCAGATTTGTTGGTAAAT 57.806 30.769 11.90 0.00 42.41 1.40
56 57 7.595819 ACTTTCCATCAGATTTGTTGGTAAA 57.404 32.000 11.90 10.16 42.41 2.01
57 58 7.942341 ACTACTTTCCATCAGATTTGTTGGTAA 59.058 33.333 11.90 8.60 42.41 2.85
58 59 7.458397 ACTACTTTCCATCAGATTTGTTGGTA 58.542 34.615 11.90 1.71 42.41 3.25
59 60 6.306987 ACTACTTTCCATCAGATTTGTTGGT 58.693 36.000 11.90 0.00 42.41 3.67
60 61 6.430925 TGACTACTTTCCATCAGATTTGTTGG 59.569 38.462 6.96 6.96 42.93 3.77
61 62 7.439157 TGACTACTTTCCATCAGATTTGTTG 57.561 36.000 0.00 0.00 0.00 3.33
62 63 8.641498 ATTGACTACTTTCCATCAGATTTGTT 57.359 30.769 0.00 0.00 0.00 2.83
63 64 9.911788 ATATTGACTACTTTCCATCAGATTTGT 57.088 29.630 0.00 0.00 0.00 2.83
108 109 9.434275 TGACTACTTTCCATCAGATTTCCTATA 57.566 33.333 0.00 0.00 0.00 1.31
109 110 8.324191 TGACTACTTTCCATCAGATTTCCTAT 57.676 34.615 0.00 0.00 0.00 2.57
110 111 7.733773 TGACTACTTTCCATCAGATTTCCTA 57.266 36.000 0.00 0.00 0.00 2.94
111 112 6.627087 TGACTACTTTCCATCAGATTTCCT 57.373 37.500 0.00 0.00 0.00 3.36
112 113 7.872113 ATTGACTACTTTCCATCAGATTTCC 57.128 36.000 0.00 0.00 0.00 3.13
191 192 8.375506 AGGTTGATGTTTCTTATGACTTGTCTA 58.624 33.333 2.35 0.00 0.00 2.59
214 215 5.138276 GTTCCTTTTTCTAGGGTTTGAGGT 58.862 41.667 0.00 0.00 35.90 3.85
299 300 7.913674 ACAACCTTAAAATTTTCAACAGCAA 57.086 28.000 6.72 0.00 0.00 3.91
448 449 2.093500 TGGTGTCACAGCTCATATGGTC 60.093 50.000 8.76 0.00 32.61 4.02
488 489 1.694696 GGGAAGAGACTGGAGTGTTGT 59.305 52.381 0.00 0.00 0.00 3.32
499 500 5.104735 AGTTCATATTGACCAGGGAAGAGAC 60.105 44.000 0.00 0.00 0.00 3.36
552 553 3.559655 CGATGAGTTTGTGTTCACTTGGA 59.440 43.478 4.59 0.00 0.00 3.53
571 572 9.388506 AGAAGAAACAATTCATGTATCTTCGAT 57.611 29.630 0.00 0.00 42.99 3.59
641 678 9.155975 GTATCTTATAAACCGATGCATCAGAAT 57.844 33.333 25.70 13.24 0.00 2.40
703 742 6.560711 GTGGTGATCAAGTGTAACAAGTTTT 58.439 36.000 0.00 0.00 41.43 2.43
749 788 1.737793 GGCACCGCATATTGCTATACC 59.262 52.381 0.00 0.00 42.25 2.73
929 970 1.920574 CGCGTTTTCTGATGATCTCGT 59.079 47.619 0.00 0.00 0.00 4.18
1509 1573 0.809385 CTAGGACCTCGAAGAACGCA 59.191 55.000 0.00 0.00 42.26 5.24
1583 1647 9.471742 CATAGCAAAAATGGTAAAAATTTACGC 57.528 29.630 9.30 6.05 42.97 4.42
1616 1681 2.003301 CGGAGAAAAAGGTCAGCTAGC 58.997 52.381 6.62 6.62 0.00 3.42
1617 1682 3.320673 ACGGAGAAAAAGGTCAGCTAG 57.679 47.619 0.00 0.00 0.00 3.42
1618 1683 3.399330 CAACGGAGAAAAAGGTCAGCTA 58.601 45.455 0.00 0.00 0.00 3.32
1619 1684 2.222027 CAACGGAGAAAAAGGTCAGCT 58.778 47.619 0.00 0.00 0.00 4.24
1863 1932 2.992089 CGGACCGGATTCTTGATGG 58.008 57.895 9.46 0.00 0.00 3.51
1921 1999 3.071206 GCCGAGGGAGAGCAGACA 61.071 66.667 0.00 0.00 0.00 3.41
2008 2093 6.615264 TCGACCATACAGCTAGTTTACTAG 57.385 41.667 11.68 11.68 46.63 2.57
2040 2129 1.179814 ACACGACAGAGGTGAGGACC 61.180 60.000 0.00 0.00 43.52 4.46
2100 2189 3.492829 GCTATAACCCTTTCCGGACTGAG 60.493 52.174 1.83 2.21 33.16 3.35
2190 2286 4.695455 ATCGAAGAACATTTGGTCGATGTT 59.305 37.500 6.10 1.10 46.52 2.71
2191 2287 3.659786 TCGAAGAACATTTGGTCGATGT 58.340 40.909 0.00 0.00 39.31 3.06
2207 2306 3.181482 ACAGATGTACTCCAGCATCGAAG 60.181 47.826 0.00 0.00 44.35 3.79
2261 2360 1.931172 ACGAACAACCTGACAAACGAG 59.069 47.619 0.00 0.00 0.00 4.18
2262 2361 1.661617 CACGAACAACCTGACAAACGA 59.338 47.619 0.00 0.00 0.00 3.85
2301 2400 0.891373 CACATCTCCTGAGACACCGT 59.109 55.000 0.00 0.00 40.75 4.83
2365 2464 1.450134 GGCACCACGATCTGCATCA 60.450 57.895 6.95 0.00 34.90 3.07
2400 2503 4.211374 GCCGTTCAAGCCTGTATTGTATAG 59.789 45.833 0.00 0.00 0.00 1.31
2401 2504 4.124238 GCCGTTCAAGCCTGTATTGTATA 58.876 43.478 0.00 0.00 0.00 1.47
2402 2505 2.943033 GCCGTTCAAGCCTGTATTGTAT 59.057 45.455 0.00 0.00 0.00 2.29
2403 2506 2.289756 TGCCGTTCAAGCCTGTATTGTA 60.290 45.455 0.00 0.00 0.00 2.41
2404 2507 1.165270 GCCGTTCAAGCCTGTATTGT 58.835 50.000 0.00 0.00 0.00 2.71
2405 2508 1.135689 GTGCCGTTCAAGCCTGTATTG 60.136 52.381 0.00 0.00 0.00 1.90
2452 2559 7.088272 TGACGATGGTGCATGTATATTACTAC 58.912 38.462 0.00 0.00 0.00 2.73
2464 2571 1.811266 GACGCTGACGATGGTGCAT 60.811 57.895 0.00 0.00 43.93 3.96
2485 2604 5.065090 CCAAATGCACTAGATGATTCGAACA 59.935 40.000 0.00 1.02 0.00 3.18
2579 2698 4.167892 TGATAGCCATACCTGGTTTCCATT 59.832 41.667 3.84 0.00 45.10 3.16
2651 2808 0.033920 GGCCTGCACCCAAGAAAAAG 59.966 55.000 0.00 0.00 0.00 2.27
2652 2809 0.398381 AGGCCTGCACCCAAGAAAAA 60.398 50.000 3.11 0.00 0.00 1.94
2653 2810 0.480690 TAGGCCTGCACCCAAGAAAA 59.519 50.000 17.99 0.00 0.00 2.29
2657 2814 0.257039 AATCTAGGCCTGCACCCAAG 59.743 55.000 17.99 2.12 0.00 3.61
2658 2815 1.590591 TAATCTAGGCCTGCACCCAA 58.409 50.000 17.99 0.00 0.00 4.12
2665 2822 8.499406 AGTATCTACTCCTATAATCTAGGCCTG 58.501 40.741 17.99 5.60 34.74 4.85
2681 2838 7.504800 ACGGATAAGACGCAGAGTATCTACTC 61.505 46.154 8.96 8.96 42.83 2.59
2682 2839 5.742546 ACGGATAAGACGCAGAGTATCTACT 60.743 44.000 0.00 0.00 38.31 2.57
2683 2840 4.451774 ACGGATAAGACGCAGAGTATCTAC 59.548 45.833 0.00 0.00 38.31 2.59
2695 2852 7.578852 TGTATACTAATGACACGGATAAGACG 58.421 38.462 4.17 0.00 37.36 4.18
2736 2899 2.434185 CGCGCAGGCTTTGGAGTA 60.434 61.111 8.75 0.00 36.88 2.59
2749 2912 1.391144 ACCTAACGTAACATTTCGCGC 59.609 47.619 0.00 0.00 0.00 6.86
2750 2913 3.241322 CCTACCTAACGTAACATTTCGCG 59.759 47.826 0.00 0.00 0.00 5.87
2753 2916 8.633561 ACCTATACCTACCTAACGTAACATTTC 58.366 37.037 0.00 0.00 0.00 2.17
2760 2923 9.959721 CCTTAATACCTATACCTACCTAACGTA 57.040 37.037 0.00 0.00 0.00 3.57
2779 2942 7.223971 GTGCTCGTTTCACATGTATCCTTAATA 59.776 37.037 0.00 0.00 34.73 0.98
2806 2969 7.401484 TTTATCCTCGCAAAAACAAAACATC 57.599 32.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.