>input_sequence_67399
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ATGGCTTTCTACCGCGGCAGCGGCATGG------------------GCATGGGCATGGGTGGCGGGTCTTCGTCGTCGTG
GGCGCCGGCGGCGATGCCGCCTCCGCCGCCGCCGCCCAGCAGGCCGTGGACCAAGGCGGAGGACAAGGTGTTCGAGAGCG
CGCTGGTGGCGATCCCGGAGCACGTGCCGAACCGGTGGGTGTTCGTGGCGGCGCAGCTGCCGGGGCGCACGCCGCAGGAG
GCGTGGGAGCACTACCAGGCGCTGGTGGCCGACATCGACCTCATCGAGCGCGGCCTGGTGGAGGCGCCCGAGTCGTGGGA
CGACGACGACGACGGCGCCGCCG---CCGGCGGCACCGTCGCGGCGGGGCGCGGCCGCCCCCGCGGCTCAGGCTGCGAGG
AGCGCCGCAAGGGCATACCCTGGACCGAGGAGGAGCACAGGTATACACACCC--CCGCCGTCAAAATCTCTAACTGCCTT
CCTTCCCTGGACCCTGTTCGTTTTCTTGTCCCTTTCCCCTGTTATTCGTCGGTGCGTTCTTCGAGGTCCTAGATACTTCC
CCGGATCTTTCCACGTCGGATGATTCCGCTGGCCCCACCATGCCACGCGTAAATTTTTACCATT-TTTGCTATGCGATCT
GCTA----GCTGACCTTTTTCTCCGTTGGCTCTGGTATATAGGATGTTCCTGGAGGGGCTGGAGAAGTACGGGCGCGGGG
ACTGGAGGAACATCTCGCGGTGGTCGGTGAAGACGCGGACGCCGACGCAGGTGGCCAGCCATGCGCAGAAGTACTTCATC
CGCCAGGCCAACGCCGCCACCCGCGGCGACAGCAAGCGCAAGAGCATCCACGACATCACCAACCCGTGA-----------
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>chr1B_1_TraesCS1B01G285000
ACATAATAAAATTTTCCTTCCAAACAAATTAAACAAGTTTCTGAATTGTTTCTAAATTTACCAACAAATCTGATGGAAAG
TAGTCAATATATAGGAAAATAGTCAATATATAGGAAATCTGATGGAAAGTAGTCAATATATAGGAAAATAACATTGTTTC
TAAATTTACCAACAAATTAAACAAGTTTACATAGACAAGTCATAAGAAACATCAACCTCAAACCCTAGAAAAAGGAACAT
CATCCTCAAAATATTTTACAAAAGTAGAGAGGCCCTAGATCAACAAGATATTTATTTTTTTGCTGTTGAAAATTTTAAGG
TTGTTGCTCAATCTTGACAAGTAGTATAATTGTTATGGAAGGGAGAACTCTCTTGAGTGAAGAGAGCTTTATGCATTCAT
ACCCAATCAATTGGCAATTAAGTGCTTCCATGTAATAGGGAAATCAATGACCATATGAGCTGTGACACCAGTCCAAAAAA
AAAAATCAACAACACTCCAGTCTCTTCCCTGGTCAATATGAACTATTTTTACCAAAAGGAGTTACTGTGAACTCCAAGTG
AACACAAACTCATC------------------------------------GAAGATACATGAATTGTTTCTTCTTTGAAC
TATGTGATCAATAAACGTTCAACTTAGTTACGGCTTTATTCTGATGCATCGGTTTATAAGATACTAGCAACTAGTTGCGC
TT-CAGACG-GAGTGTAAAAAAAAACTTGTTACACTTGATCACCACGTTGGCGGCACGGTACGCGCGGGTATAGCAATAT
GCGGTGCCACATTCGGCTCAAA--AAAAAAAAGGAAAGAAACGCAATGCGGTGCCACGCGACGGTGGCCACGCCCAAAAC
GTGTGCGCGGGCGGGGCACACAGAGAATCAAGCGCGCCCCCCGGGCCACCCTCGCTCCAAATCTTTATAAGGCGCCCGTG
GTTGCCTCGACGAGATCATCAGAAAACGCGAGCCAAAAGCCATCGCAAACCCAGGAAGAAACGGTAAGCTGTTGCGCGGC
ATGGCTTTCTACCGCGGCAGCGGCATGG------------------GCATGGGCATGGGTGGCGGGTCTTCGTCGTCGTG
GGCGCCGGCGGCGATGCCGCCTCCGCCGCCGCCGCCCAGCAGGCCGTGGACCAAGGCGGAGGACAAGGTGTTCGAGAGCG
CGCTGGTGGCGATCCCGGAGCACGTGCCGAACCGGTGGGTGTTCGTGGCGGCGCAGCTGCCGGGGCGCACGCCGCAGGAG
GCGTGGGAGCACTACCAGGCGCTGGTGGCCGACATCGACCTCATCGAGCGCGGCCTGGTGGAGGCGCCCGAGTCGTGGGA
CGACGACGACGACGGCGCCGCCG---CCGGCGGCACCGTCGCGGCGGGGCGCGGCCGCCCCCGCGGCTCAGGCTGCGAGG
AGCGCCGCAAGGGCATACCCTGGACCGAGGAGGAGCACAGGTATACACACCC--CCGCCGTCAAAATCTCTAACTGCCTT
CCTTCCCTGGACCCTGTTCGTTTTCTTGTCCCTTTCCCCTGTTATTCGTCGGTGCGTTCTTCGAGGTCCTAGATACTTCC
CCGGATCTTTCCACGTCGGATGATTCCGCTGGCCCCACCATGCCACGCGTAAATTTTTACCATT-TTTGCTATGCGATCT
GCTA----GCTGACCTTTTTCTCCGTTGGCTCTGGTATATAGGATGTTCCTGGAGGGGCTGGAGAAGTACGGGCGCGGGG
ACTGGAGGAACATCTCGCGGTGGTCGGTGAAGACGCGGACGCCGACGCAGGTGGCCAGCCATGCGCAGAAGTACTTCATC
CGCCAGGCCAACGCCGCCACCCGCGGCGACAGCAAGCGCAAGAGCATCCACGACATCACCAACCCGTGATGCGTCATCCG
TCGTGGACAAGCCATCAAGAATCCGGTCCGGCCCGAGCCTAGCCGATACCCGCCGCCCGTCGTCG---------CCGCTG
---TCTGCTCTCCCTCGGCCGTCCGCCCGTGCAAATG----TAGGGGAAAGGCGTGGCTCGGTTGGAACCTGCGATTCGG
AACCAGTAATCTCTAGTAAACTAGCTGTATGGTCGAATAAATCG----GGTCCTCACCTCTGTCGTGTGTGTGTGGGTGA
CATGTCAAGGAAGAAACAGAGTCAGTCACTCAGT----CCGGAAAGGGTTATAGCAATCCACCGCATGGTTTTT---ACC
GCTTTCCTGTTTTACACCCGCATGGCATTTCACATCCCGTTGGAGAACA---TCGACCAAATGTTCTTCGATGCTGGAGT
ACATCTGTCCCGGTGACCTGACAAGCGTCCTTTATCGGCCTCGTTTGTCAGGTTGTTCGTGTCCTGTCGAGTCACCCGTA
CGGTGTCTCAGGAGATGTGTACGCCGCGCAGCCCAGCATGTGTTGAAAGCGGCCTGACGGCGGTGATGCAGATCGTGGTG
C----CTGCCTGGGCTCGCGTGCTATAC----AATACAGGCTTGAACGGCACGTGGTGAATTACGAGCTGCAAAAACAGT
AGTAATATACATGCACC------------ATCGTCAGCGTCCATGTTCGAATCATCTAGTGCATTTGGGGCTGTCACTTG
TCACCTAATTAGGCAACTGTGCAGGCTTACGTAATTGCTCTTTCTGGCAAGTTCCGTAATGGAAACCAGG----------
----------------------------TATGGCTATCAACAACTACGAGTCTCGTCTACTTCACTGTACGTGCTTTTGC
CAAGTTTCTTTTTCTTGGGTGCAGGCCTAGATTATAGGAGTAGATACTCTGCGTCTTATCCGTGTCATTAG------TAT
ACAGGAAGCGATGATTGCTACTCCAAAGCCTGCGCGAAATGTTACGTTAGGTAGGTATAGGTATTAAGGATACATGTGAA
ACGAGCACGATGTTTTGTTTTTGCGAGGATAAAAGAGTTTTAT
>chr1D_116
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-----------------------------------AATCTTACGGAAAGTAGTCAATATATAGGAAAATAACATTGTTTC
TAAATTTGCCAACAAATTAAACAAGTTTACAGAGGCAAGCCATAAGAAACATCATCCTCAAACCCTAAAAGAAGGAACAT
CATCCACAAAATAATTTACAAAAGTAGAGAGGCCCTAGATCAACAAGATATTTATTTTTATTTTGTTGAAAATTTTAAGG
TTGTTGCTCAATCTTGACAAGTAGTATAATTGTTATGGAAGGGATAACTCTCTTGAGTGAAGAGAGCTTTATGCATTTAT
ACCCAATCAATTGGCAATTAAGTGATTCCATGTAATAGGGAAATCAATAACCATATGAGATGTGACAGCAGT----AAAA
ATAAATCATCAACACTCCACTCTCTTCCCTGGTCAATATGAACTATTTTTACCAAAATGAGTTATTGTGAACCCCAAGTG
AACACAAACTCTTCTAGATTCCTTACCCATCTCTTTGATACCATTATGATGAAGATACATGAATTGTTTCTTCTTTGAAC
TATGTGATCCATAAACGTTCAACT-------------------ATGCAGCGGTTTAG-----A---GCAACTAGTTGCAC
TT-CACACTTGAGTGTAAAAA-AAACTTGTTACACTTTTTCACCGCGTTGGCGGCACGGTACGCGCGTGTATAGCAATAT
GCGGTGCCACATTCGGCTCAAAGAAAAAAAAAGGAAAGAAACGCAATGCGGTGCCACGCGACGGCCGTCACGCCCAAAAC
GTGTGCGCGGGCGGGGCACACAGAGAATCAAGCGCGCCCCCCGGGCCACCCTCGCTCCAAATCTTTATAAGGCGCCCGTG
GTTGCCTCGGCGAGATCATCAGAAAACGCGAGCCAAAAGCCATCGCAAACCCAGGAAGAAACGGTAAGCTGTTGCGCGGC
ATGGCTTTCTACCGCGGCAGCGGCATGGGCATG------GGTATGGGCATGGGCATGGGTGGCGGGTCTTCGTCGTCGTG
GGCGCCGGCGGCGATGCCACCTCCGCCGCCGCCGCCCAGCAGGCCGTGGACCAAGGCGGAGGACAAGGTGTTCGAGAGCG
CGCTGGTGGCGATCCCGGAGCACGTGCCGAATCGGTGGGTGTTCGTGGCGGCGCAGCTGCCGGGGCGCACGCCGCAGGAG
GCGTGGGAGCACTACCAGGCGCTGGTGGCCGACATCGACCTCATCGAGCGCGGCCTGGTCGAGCCCCCCGAGTCGTGGGA
CGACGACGACGACGGCGCCGCCGGCGCCGGCGGCACCGTCGCGGCGGGGCGCGGCCGCCCCCGCGGCTCGGGCGGCGAGG
AGCGCCGCAAGGGCATACCCTGGACCGAGGAGGAGCACAGGTATACACACACCACCGCCGTCAAAATCTCTAACTGCCTT
CCTTCCCTGGACCCTGTTCGTTTTCTTGTCCCTTTCCCCTGTTATTCGTCGGCGCGTTCTTGTCGGTCCTAGATACTTCT
CCGGATCTTTCCACGTCGGATGATTCCGCTGGCCCCACCATGCCACACGTAAATTTTTACCATTCTTTGCTATGCGATCT
ATACAGGCGCTGACCTTTTTCTCCGTTGGGTCTGGGCAATAGGATGTTCCTGGAGGGGCTGGAGAAGTACGGGCGCGGCG
ACTGGAGGAACATCTCGCGGTGGTCGGTGAAGACGCGGACGCCGACGCAGGTGGCCAGCCATGCGCAGAAGTACTTCATC
CGCCAGGCCAACGCCGCCACCCGCGGCGACAGCAAGCGCAAGAGCATCCACGACATCACCAACCCGTGATGCGTCATCCG
TCGTGGACAAGGCACCAAGAATCCGGTCCGCCCCGAGCCTAGCCGATACCCGCCGCCGGTCGTCGTCGTCGTCGCCGCCG
---TCTGCTCTCCCTCGGCCGTCCGCCCGTGCAAATGTATGTAGGGGAAAGGCGTGGCTCGGTTGGAACCTGCGATTCGG
AACCAGTAATCTTTAGTAAACTAGCTGTATGGTCGAATAAATCG----TGTCATCACCTCTGTCGTGTGTGTGT--GTGA
CATGTCAAGGAAGAAACAGAGTCAGTCAGTCAGTCAGTCCGGAAAGGGTTATAGCAATCCACCGCTTGGTTTTT---ACC
GCTTTCCTGTTTTACACCCGCATGGCATTTCACATCCCGTTCTCATCCTATACCGACCAAATGTTGTTCGATGCTGGAGC
ACATCTGTCCCGGTGACCTGACAAGCGCCCTTTATCGGCTCCGTTTGTCAGGTTGCTCGTGTCGTGTCGAGTCACCCGTG
CGGTGTCTCAGGAGATGTGTACGCCGCGCAGCCCAGCATGAGTTGAAAGCGGCCTGACGGCGGCGATGCAGATCATGGTG
CCTGCCTGCCTGGGCTCGCGTGGCTATACTATAATACAGGCTTGAACGGCACGTGGTGAATTACGAGCTGCAAAAACAAT
AGTAATATACCTGCACC------------ATCGTCAGCGTCCAGGTTCGAATCATCTAGTGCATTTGGGGCTGTCACTTG
TCACCTAATTAGGCAACTGTGCAGGCTTACGTAATTGCTCTTTCTGGCAAGTTCCGTGATGGAAACCAGG----------
----------------------------TATGGCTATCAACAACTACGAGTCTCGTCTACTTCACTGTACGTCCTTTTGC
CAAGTTTG--TTTTCTGGGTGTAGGTCTAGATCA------TAGATACTCTGTGCCTTATCCGTGTCATTAG------TAT
ACAGGAAGCGATGATTGCCACTCCAAAGCCTCAGCCATATGTCACGGCAGGTAGGTATAGGAATTAAGGATACATGTGAA
ACGAGCACAATGTTTTGTTTTTGCAAGGATAACAAAGTTTTAT
>chr1A_118
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-------------------------------------TCTGATGGAAAGTAGTCAATATATAGGAAAATAACATTGTTTC
TAAATTTACCAACAAATTAAACAAGTTTATAGAGACAAGTCATAAGAAACATCATCCTCAAACCCTAAAAGAAGGAACAT
CATCCTCAATATATTTTACAAAAGTAGAGAGGCCCTAGATCAACAAGATATTTATTTCTGTGC-GTTGAAAATTTTAAGG
TTCTTGCTCAATCTTGACAAGTAGTATAATT-TTATGGAAGGGAGAACTCTCTTGAGTGAAGAGAGCTTTATACATTTAT
ACCCAATCAATTGGCAATTAAGTGCTTCCATGTAATAGGGAAATTACTAACCATATGAGCTGTGACACCAGTC---AAAA
AAAAATCATCAACACTCCACTCTCTTCCCTGGTCAATATGAACTATTTATACCGAGGGAGAACTC---------------
-----------------------------------------------------------------------TCTTTGAAC
TATGTGATCAATAAACGTTCAACTTAGTTACGGCTTCGTTCTGATGCATCGGTTCATAAGATA---GCAACTAGTTGCAC
TTTCACACT-GTGTGTAAAAA-AAACTTGTTACACTTGATCACTGCGTTGGCGGCACGGTACGGGCGTGTATAGCAATAT
GCGGTGCCACATTCGGCTCAAAAAAAAAGA---GAAAGAAACGCAATGCGGTGCCACGCGACGGCCGTCACGCCCAAAAC
GTGTGCGCGGGCGGGGCACACAGAGAATCAAGCGCGCCCCCCGGGCCATCCTCGCTCCAAATCTTTATAAGGCGCCCGGG
GCTGCCTCGGCGAGATCATCAGAAAACGCGAGCCAAAAGCCATCGCAAACCCAGGAAGAAACGGTAAGCTGTTGCGCGGC
ATGGCTTTCTACCGCGGCAGCGGCATGGGCATGGGTATGGGTATGGGCATGGGCATGGGTGGCGGGTCTTCGTCGTCGTG
GGCGCCGGCGGCGATGCCGCCGCCGCCGCCGCCGCCCAGCAGGCCGTGGACCAAGGCGGAGGACAAGGTGTTCGAGGGCG
CGCTGGTGGCGATCCCGGAGCACGTGCCGAACCGGTGGGCGTTCGTGGCGGCGCAGCTGCCGGGGCGCACGCCGCAGGAG
GCCTGGGAGCACTACCAGGCGCTGGTGGCCGACATCGACCTCATCGAGCGCGGCCTGGTCGAGCCCCCCGAGTCGTGGGA
CGACGACGACGACGGCGCCGCCGGCGGCGGCGGCACCGTCGCGGCGGGGCGCGGCCGCCCCCGCGGCTCCGGCGGCGAGG
AGCGCCGCAAGGGCATACCCTGGACCGAGGAGGAGCACAGGTATACACACCCCTCCGCCGTCAAAATCTCCAACTGCCTT
CCTTCCCTGGACCCTGTTCGTTTTCTTGTCCCTTTCCCCTGTTATTAGTCGGCGCGTTCTTCGAGGTCCTAGATACTTCC
CCGGATCTTGCCACGTCGGATGATTCCGCTGGCCCCACCATGCCACACGTAAATTTTTACCATT-TTTGCTATGCGATCT
ATACTGGCGCTGACCTTTTTCTCCGTTGGGTCTCGGCAATAGGATGTTCCTGGAGGGGCTGGAGAAGTACGGGCGCGGGG
ATTGGAGGAACATCTCGCGGTGGTCGGTGAAGACGCGGACGCCGACGCAGGTGGCCAGCCATGCGCAGAAGTACTTCATC
CGCCAGGCCAACGCCGCCACCCGCGGCGACAGCAAGCGCAAGAGCATCCACGACATCACCAACCCGTGATGCGTCATCCG
TCGTGGACAAGGCACCAAGAATCCGGTCCGGCCCGAGCCTAGCCGATACCCGCCGCCCGTCGTCGTCGTCGCCGCCGCCG
CCGTCTGCTCTCCCTCGGCCGTCCGCCCGTGCAAATGTATGTAGGGGAAAGGCGTGGCTCGGCTGGAACCTGCGATTCGG
AACCAGTAATCTGTAGTAAACTAGCTGTGTGGTCGAATAAATCCTGTCTGTCCTCACCTCTGTCGTGTGTGTGTGGGTGA
CATGTCAAGGAAGAAACAGAGTCAGTCAGTCAGTCAGTTCGGAAAGGGTTATAGCAATCCACCGCATGGTTTTTTTTACC
GCTTTCCTGTTTTACACCCGCATGGCATTTCACATCCCGTTCTCATCCTGTGTCGACCAAATGTTGTTCAATGCTGGAGC
ACATCTGTCCCGGTGACCTGACAAGCGTCCTTTATCGGCTCCGTTTGTCAGGTTGTTCGTGTCCTGTCGAGTCACCCGTG
CGGTGTCTCAGGAGATGTGTACGCCGCGCAGACCAGCATGTGTTGAAAGCGGCCTGACGGCGGCGATGCAGATCATGGTG
C----CTGCCTGGGCTCGCCTGGCTATACTATA---CAGGCTTAAACGGCACGTGGTGAATTGCGAGCTGCAAAAACAAT
TACTCACCTCTTAGGTAGTCGGGTGCACTATCGTCAGTGTCCAGGTTCGAATCATCTAGTGCATTTGGGGCTGTCACTTG
TCACCTAATTAGGCAACTGTGCAGGCTTACGTAATTGCTCTTTCTGGCAAGTTCCGTGATGGAAACCAGGTATTTTTTTA
TTTATTTTTGCGAAATGGAAACCAGGTATATGGCCATCAACAACTAAGAGTCTCGTCTACTTCACTGTACGTGCTTTTGC
CAAGTTTG--TTTTCTGGGTGTAGATCTAGATTA------TAGATACTATGTGTCTTATCCGTGTCACTAGTACTCCTAT
ACAGGAAGCGATGATTGCCACTCCAAAGCCTCAGCCAAATGTCACGGCAGGTAGGTATAGGAATTAAGGATACATGTGAA
ACGAGCGCAATGTATTGTTTTTGCAAGGATAAAAAAGTTTTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
-------------------------------S----------------------S------------S--S---------
-----------------------------------------------------------S--------------------
-----------------------------------------------------------------------------S--
------------------------------------------------S------------------------SSS----
--------S----------S----------------------------------------------------S-------
-----------S--------------------------------------------------------------------
------------------------------------SS-------------------------SSS------------S-
-----S--S------------S----------------------S----------------------S------------
----------------------------------------------------------------SS-S------------
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---------S----------------------------------------------------------------------
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-----------------------------------------------------------S---S-S--------------
---------------------------------------------------------------------S---S------
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----------------------------------------------------S---------------------------
----------------------------------------------S---------------------------------
SSSS-------------------------S-----SSS------------------------------------------
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-----------S--S---------------------------------------------------------------S-
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------------S-----------------------------------S-------------------------------
----------------------------S---------------------------------------------------
-----------------------------------------SSSSSS-S----------------S-------------S
---------------------------------------SS--------------------------------------S
---------------------------------------------------------------S----------S-----
----------------------SSSSSS--------------------------------------------------S-
----------S--------------------------------S------------------------------------
---------------------------------------------------------S----------------------
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-------SSS---SS------S---S--------SSSSSS-----------S----------------------------
------------------S------------SS--S------S---SS-------------S------------------
--------S---------------S---------S--------
>forward_476
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--------------------------------------------------------GAGCTGTGACACCAGTCCAA----
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>reverse_1573
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----------------------------------------------------TGCGTTCTTCGAGGTCCTAG--------
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>forward_729
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--------------------------------------------------------------------CAACTAGTTGCG
CTTCAGACG-----------------------------------------------------------------------
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>reverse_2808
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-------CTTTTTCTTGGGTGCAGGCC-----------------------------------------------------
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