Multiple sequence alignment - TraesCS1B01G281700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G281700 chr1B 100.000 1498 0 0 836 2333 489995075 489993578 0.000000e+00 2767
1 TraesCS1B01G281700 chr1B 100.000 431 0 0 1 431 489995910 489995480 0.000000e+00 797
2 TraesCS1B01G281700 chr1A 89.210 1557 67 38 836 2333 465283974 465282460 0.000000e+00 1851
3 TraesCS1B01G281700 chr1A 89.899 594 32 14 836 1421 465302128 465301555 0.000000e+00 739
4 TraesCS1B01G281700 chr1A 93.243 74 4 1 348 420 465284089 465284016 8.820000e-20 108
5 TraesCS1B01G281700 chr1D 89.363 1523 81 22 836 2333 366020546 366019080 0.000000e+00 1840
6 TraesCS1B01G281700 chr2A 92.199 282 22 0 1 282 550862071 550862352 1.300000e-107 399
7 TraesCS1B01G281700 chr5B 91.844 282 23 0 1 282 704751983 704751702 6.040000e-106 394
8 TraesCS1B01G281700 chr4A 91.844 282 23 0 1 282 610758076 610758357 6.040000e-106 394
9 TraesCS1B01G281700 chr3B 89.547 287 29 1 1 287 355778721 355779006 1.700000e-96 363
10 TraesCS1B01G281700 chr7B 89.007 282 31 0 1 282 414114510 414114791 1.330000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G281700 chr1B 489993578 489995910 2332 True 1782.0 2767 100.0000 1 2333 2 chr1B.!!$R1 2332
1 TraesCS1B01G281700 chr1A 465282460 465284089 1629 True 979.5 1851 91.2265 348 2333 2 chr1A.!!$R2 1985
2 TraesCS1B01G281700 chr1A 465301555 465302128 573 True 739.0 739 89.8990 836 1421 1 chr1A.!!$R1 585
3 TraesCS1B01G281700 chr1D 366019080 366020546 1466 True 1840.0 1840 89.3630 836 2333 1 chr1D.!!$R1 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.031721 AGAAAGCTCCGTCGACGTTT 59.968 50.0 33.49 26.3 37.74 3.6 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1883 1.525995 AAACGCGCAGGGATATGGG 60.526 57.895 5.73 0.0 46.37 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.059136 GAGAAAGCTCCGTCGACG 57.941 61.111 30.33 30.33 35.01 5.12
18 19 1.209640 GAGAAAGCTCCGTCGACGT 59.790 57.895 33.49 16.43 37.74 4.34
19 20 0.386985 GAGAAAGCTCCGTCGACGTT 60.387 55.000 33.49 21.95 37.74 3.99
20 21 0.031721 AGAAAGCTCCGTCGACGTTT 59.968 50.000 33.49 26.30 37.74 3.60
21 22 1.267806 AGAAAGCTCCGTCGACGTTTA 59.732 47.619 33.49 18.82 37.74 2.01
22 23 2.094854 AGAAAGCTCCGTCGACGTTTAT 60.095 45.455 33.49 21.79 37.74 1.40
23 24 1.905449 AAGCTCCGTCGACGTTTATC 58.095 50.000 33.49 18.24 37.74 1.75
24 25 1.093159 AGCTCCGTCGACGTTTATCT 58.907 50.000 33.49 19.96 37.74 1.98
25 26 1.471684 AGCTCCGTCGACGTTTATCTT 59.528 47.619 33.49 11.67 37.74 2.40
26 27 2.094854 AGCTCCGTCGACGTTTATCTTT 60.095 45.455 33.49 10.15 37.74 2.52
27 28 2.027688 GCTCCGTCGACGTTTATCTTTG 59.972 50.000 33.49 16.62 37.74 2.77
28 29 3.495193 CTCCGTCGACGTTTATCTTTGA 58.505 45.455 33.49 19.65 37.74 2.69
29 30 3.495193 TCCGTCGACGTTTATCTTTGAG 58.505 45.455 33.49 15.43 37.74 3.02
30 31 3.058016 TCCGTCGACGTTTATCTTTGAGT 60.058 43.478 33.49 0.00 37.74 3.41
31 32 4.154015 TCCGTCGACGTTTATCTTTGAGTA 59.846 41.667 33.49 4.33 37.74 2.59
32 33 4.853196 CCGTCGACGTTTATCTTTGAGTAA 59.147 41.667 33.49 0.00 37.74 2.24
33 34 5.219914 CCGTCGACGTTTATCTTTGAGTAAC 60.220 44.000 33.49 0.00 37.74 2.50
34 35 5.219914 CGTCGACGTTTATCTTTGAGTAACC 60.220 44.000 29.08 0.00 34.11 2.85
35 36 5.061435 GTCGACGTTTATCTTTGAGTAACCC 59.939 44.000 0.00 0.00 0.00 4.11
36 37 4.030977 CGACGTTTATCTTTGAGTAACCCG 59.969 45.833 0.00 0.00 0.00 5.28
37 38 4.248058 ACGTTTATCTTTGAGTAACCCGG 58.752 43.478 0.00 0.00 0.00 5.73
38 39 4.248058 CGTTTATCTTTGAGTAACCCGGT 58.752 43.478 0.00 0.00 0.00 5.28
39 40 4.692155 CGTTTATCTTTGAGTAACCCGGTT 59.308 41.667 8.17 8.17 0.00 4.44
40 41 5.390145 CGTTTATCTTTGAGTAACCCGGTTG 60.390 44.000 13.43 0.00 0.00 3.77
41 42 1.886886 TCTTTGAGTAACCCGGTTGC 58.113 50.000 13.43 11.78 0.00 4.17
42 43 0.515564 CTTTGAGTAACCCGGTTGCG 59.484 55.000 13.43 0.00 33.57 4.85
43 44 0.885596 TTTGAGTAACCCGGTTGCGG 60.886 55.000 13.43 0.00 33.57 5.69
44 45 3.122971 GAGTAACCCGGTTGCGGC 61.123 66.667 13.43 5.88 33.57 6.53
60 61 3.885521 GCGCCAGCCATCTCTTGC 61.886 66.667 0.00 0.00 37.42 4.01
61 62 2.124819 CGCCAGCCATCTCTTGCT 60.125 61.111 0.00 0.00 38.67 3.91
62 63 1.748122 CGCCAGCCATCTCTTGCTT 60.748 57.895 0.00 0.00 35.12 3.91
63 64 1.807886 GCCAGCCATCTCTTGCTTG 59.192 57.895 0.00 0.00 35.12 4.01
64 65 1.807886 CCAGCCATCTCTTGCTTGC 59.192 57.895 0.00 0.00 35.12 4.01
65 66 0.963856 CCAGCCATCTCTTGCTTGCA 60.964 55.000 0.00 0.00 35.12 4.08
66 67 1.103803 CAGCCATCTCTTGCTTGCAT 58.896 50.000 0.00 0.00 35.12 3.96
67 68 1.065701 CAGCCATCTCTTGCTTGCATC 59.934 52.381 0.00 0.00 35.12 3.91
68 69 1.100510 GCCATCTCTTGCTTGCATCA 58.899 50.000 0.00 0.00 0.00 3.07
69 70 1.065701 GCCATCTCTTGCTTGCATCAG 59.934 52.381 0.00 0.00 0.00 2.90
70 71 1.676529 CCATCTCTTGCTTGCATCAGG 59.323 52.381 0.00 0.00 0.00 3.86
71 72 2.366533 CATCTCTTGCTTGCATCAGGT 58.633 47.619 0.00 0.00 0.00 4.00
72 73 2.574006 TCTCTTGCTTGCATCAGGTT 57.426 45.000 0.00 0.00 0.00 3.50
73 74 2.867624 TCTCTTGCTTGCATCAGGTTT 58.132 42.857 0.00 0.00 0.00 3.27
74 75 4.019792 TCTCTTGCTTGCATCAGGTTTA 57.980 40.909 0.00 0.00 0.00 2.01
75 76 4.005650 TCTCTTGCTTGCATCAGGTTTAG 58.994 43.478 0.00 0.00 0.00 1.85
76 77 3.084039 TCTTGCTTGCATCAGGTTTAGG 58.916 45.455 0.00 0.00 0.00 2.69
77 78 1.176527 TGCTTGCATCAGGTTTAGGC 58.823 50.000 0.00 0.00 0.00 3.93
78 79 1.272092 TGCTTGCATCAGGTTTAGGCT 60.272 47.619 0.00 0.00 0.00 4.58
79 80 1.821136 GCTTGCATCAGGTTTAGGCTT 59.179 47.619 0.00 0.00 0.00 4.35
80 81 2.159324 GCTTGCATCAGGTTTAGGCTTC 60.159 50.000 0.00 0.00 0.00 3.86
81 82 2.877097 TGCATCAGGTTTAGGCTTCA 57.123 45.000 0.00 0.00 0.00 3.02
82 83 3.153369 TGCATCAGGTTTAGGCTTCAA 57.847 42.857 0.00 0.00 0.00 2.69
83 84 2.819608 TGCATCAGGTTTAGGCTTCAAC 59.180 45.455 0.00 0.00 0.00 3.18
84 85 2.819608 GCATCAGGTTTAGGCTTCAACA 59.180 45.455 10.43 0.00 0.00 3.33
85 86 3.445096 GCATCAGGTTTAGGCTTCAACAT 59.555 43.478 10.43 1.95 0.00 2.71
86 87 4.439289 GCATCAGGTTTAGGCTTCAACATC 60.439 45.833 10.43 0.00 0.00 3.06
87 88 4.365514 TCAGGTTTAGGCTTCAACATCA 57.634 40.909 10.43 0.00 0.00 3.07
88 89 4.724399 TCAGGTTTAGGCTTCAACATCAA 58.276 39.130 10.43 0.00 0.00 2.57
89 90 4.518970 TCAGGTTTAGGCTTCAACATCAAC 59.481 41.667 10.43 0.00 0.00 3.18
90 91 4.520492 CAGGTTTAGGCTTCAACATCAACT 59.480 41.667 10.43 0.00 0.00 3.16
91 92 5.010012 CAGGTTTAGGCTTCAACATCAACTT 59.990 40.000 10.43 0.00 0.00 2.66
92 93 5.010012 AGGTTTAGGCTTCAACATCAACTTG 59.990 40.000 10.43 0.00 0.00 3.16
93 94 5.221244 GGTTTAGGCTTCAACATCAACTTGT 60.221 40.000 10.43 0.00 0.00 3.16
94 95 3.996150 AGGCTTCAACATCAACTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
95 96 2.624838 AGGCTTCAACATCAACTTGTGG 59.375 45.455 0.00 0.00 0.00 4.17
96 97 2.397549 GCTTCAACATCAACTTGTGGC 58.602 47.619 0.00 0.00 0.00 5.01
97 98 2.035066 GCTTCAACATCAACTTGTGGCT 59.965 45.455 0.00 0.00 0.00 4.75
98 99 3.854784 GCTTCAACATCAACTTGTGGCTC 60.855 47.826 0.00 0.00 0.00 4.70
99 100 2.929641 TCAACATCAACTTGTGGCTCA 58.070 42.857 0.00 0.00 0.00 4.26
100 101 3.489355 TCAACATCAACTTGTGGCTCAT 58.511 40.909 0.00 0.00 0.00 2.90
101 102 3.253921 TCAACATCAACTTGTGGCTCATG 59.746 43.478 1.41 1.41 0.00 3.07
102 103 2.165167 ACATCAACTTGTGGCTCATGG 58.835 47.619 7.27 0.00 0.00 3.66
103 104 1.135199 CATCAACTTGTGGCTCATGGC 60.135 52.381 7.27 0.00 40.90 4.40
104 105 1.210931 CAACTTGTGGCTCATGGCG 59.789 57.895 7.27 0.00 42.94 5.69
105 106 1.228245 AACTTGTGGCTCATGGCGT 60.228 52.632 7.27 0.00 42.94 5.68
106 107 0.823356 AACTTGTGGCTCATGGCGTT 60.823 50.000 7.27 0.00 42.94 4.84
107 108 0.036164 ACTTGTGGCTCATGGCGTTA 59.964 50.000 7.27 0.00 42.94 3.18
108 109 1.340017 ACTTGTGGCTCATGGCGTTAT 60.340 47.619 7.27 0.00 42.94 1.89
109 110 1.331756 CTTGTGGCTCATGGCGTTATC 59.668 52.381 0.00 0.00 42.94 1.75
110 111 0.541392 TGTGGCTCATGGCGTTATCT 59.459 50.000 0.00 0.00 42.94 1.98
111 112 1.760029 TGTGGCTCATGGCGTTATCTA 59.240 47.619 0.00 0.00 42.94 1.98
112 113 2.224042 TGTGGCTCATGGCGTTATCTAG 60.224 50.000 0.00 0.00 42.94 2.43
113 114 1.270305 TGGCTCATGGCGTTATCTAGC 60.270 52.381 0.00 0.00 42.94 3.42
114 115 1.001406 GGCTCATGGCGTTATCTAGCT 59.999 52.381 0.00 0.00 42.94 3.32
115 116 2.064762 GCTCATGGCGTTATCTAGCTG 58.935 52.381 0.00 0.00 0.00 4.24
116 117 2.681706 CTCATGGCGTTATCTAGCTGG 58.318 52.381 0.00 0.00 0.00 4.85
117 118 2.036475 CTCATGGCGTTATCTAGCTGGT 59.964 50.000 0.00 0.00 0.00 4.00
118 119 2.434336 TCATGGCGTTATCTAGCTGGTT 59.566 45.455 0.00 0.00 0.00 3.67
119 120 2.596904 TGGCGTTATCTAGCTGGTTC 57.403 50.000 0.00 0.00 0.00 3.62
120 121 1.828595 TGGCGTTATCTAGCTGGTTCA 59.171 47.619 0.00 0.00 0.00 3.18
121 122 2.159099 TGGCGTTATCTAGCTGGTTCAG 60.159 50.000 0.00 0.00 34.12 3.02
135 136 5.070770 CTGGTTCAGCTCAGCTATATAGG 57.929 47.826 11.72 0.00 36.40 2.57
136 137 4.740902 TGGTTCAGCTCAGCTATATAGGA 58.259 43.478 11.72 0.74 36.40 2.94
137 138 5.147767 TGGTTCAGCTCAGCTATATAGGAA 58.852 41.667 11.72 0.00 36.40 3.36
138 139 5.782331 TGGTTCAGCTCAGCTATATAGGAAT 59.218 40.000 11.72 0.00 36.40 3.01
139 140 6.270927 TGGTTCAGCTCAGCTATATAGGAATT 59.729 38.462 11.72 0.00 36.40 2.17
140 141 6.593382 GGTTCAGCTCAGCTATATAGGAATTG 59.407 42.308 11.72 3.47 36.40 2.32
141 142 7.382110 GTTCAGCTCAGCTATATAGGAATTGA 58.618 38.462 11.72 5.37 36.40 2.57
142 143 6.929625 TCAGCTCAGCTATATAGGAATTGAC 58.070 40.000 11.72 0.00 36.40 3.18
143 144 6.494835 TCAGCTCAGCTATATAGGAATTGACA 59.505 38.462 11.72 0.00 36.40 3.58
144 145 7.015584 TCAGCTCAGCTATATAGGAATTGACAA 59.984 37.037 11.72 0.00 36.40 3.18
145 146 7.658982 CAGCTCAGCTATATAGGAATTGACAAA 59.341 37.037 11.72 0.00 36.40 2.83
146 147 8.213679 AGCTCAGCTATATAGGAATTGACAAAA 58.786 33.333 11.72 0.00 36.99 2.44
147 148 8.286097 GCTCAGCTATATAGGAATTGACAAAAC 58.714 37.037 11.72 0.00 0.00 2.43
148 149 8.677148 TCAGCTATATAGGAATTGACAAAACC 57.323 34.615 11.72 0.00 0.00 3.27
149 150 8.271458 TCAGCTATATAGGAATTGACAAAACCA 58.729 33.333 11.72 3.93 0.00 3.67
150 151 9.071276 CAGCTATATAGGAATTGACAAAACCAT 57.929 33.333 11.72 9.03 0.00 3.55
151 152 9.071276 AGCTATATAGGAATTGACAAAACCATG 57.929 33.333 11.72 0.00 0.00 3.66
152 153 8.299570 GCTATATAGGAATTGACAAAACCATGG 58.700 37.037 11.19 11.19 0.00 3.66
153 154 9.573166 CTATATAGGAATTGACAAAACCATGGA 57.427 33.333 21.47 0.00 0.00 3.41
157 158 7.116075 AGGAATTGACAAAACCATGGATATG 57.884 36.000 21.47 15.50 0.00 1.78
158 159 6.669154 AGGAATTGACAAAACCATGGATATGT 59.331 34.615 21.47 18.63 32.21 2.29
159 160 7.180766 AGGAATTGACAAAACCATGGATATGTT 59.819 33.333 21.47 0.00 32.21 2.71
160 161 7.492344 GGAATTGACAAAACCATGGATATGTTC 59.508 37.037 21.47 12.60 32.21 3.18
161 162 5.913137 TGACAAAACCATGGATATGTTCC 57.087 39.130 21.47 9.06 45.69 3.62
175 176 7.588497 GGATATGTTCCAGGCTTTAAAAGAT 57.412 36.000 0.00 0.00 44.74 2.40
176 177 7.428826 GGATATGTTCCAGGCTTTAAAAGATG 58.571 38.462 0.00 0.00 44.74 2.90
177 178 7.068716 GGATATGTTCCAGGCTTTAAAAGATGT 59.931 37.037 0.00 0.00 44.74 3.06
178 179 6.670695 ATGTTCCAGGCTTTAAAAGATGTT 57.329 33.333 0.00 0.00 0.00 2.71
179 180 6.084326 TGTTCCAGGCTTTAAAAGATGTTC 57.916 37.500 0.00 0.00 0.00 3.18
180 181 5.833131 TGTTCCAGGCTTTAAAAGATGTTCT 59.167 36.000 0.00 0.00 0.00 3.01
181 182 6.016276 TGTTCCAGGCTTTAAAAGATGTTCTC 60.016 38.462 0.00 0.00 0.00 2.87
182 183 5.630121 TCCAGGCTTTAAAAGATGTTCTCA 58.370 37.500 0.00 0.00 0.00 3.27
183 184 6.248433 TCCAGGCTTTAAAAGATGTTCTCAT 58.752 36.000 0.00 0.00 36.95 2.90
184 185 6.151648 TCCAGGCTTTAAAAGATGTTCTCATG 59.848 38.462 0.00 0.00 34.06 3.07
185 186 6.327934 CAGGCTTTAAAAGATGTTCTCATGG 58.672 40.000 0.00 0.00 34.06 3.66
186 187 6.151648 CAGGCTTTAAAAGATGTTCTCATGGA 59.848 38.462 0.00 0.00 34.06 3.41
187 188 6.894103 AGGCTTTAAAAGATGTTCTCATGGAT 59.106 34.615 0.00 0.00 34.06 3.41
188 189 6.976925 GGCTTTAAAAGATGTTCTCATGGATG 59.023 38.462 0.00 0.00 34.06 3.51
189 190 6.976925 GCTTTAAAAGATGTTCTCATGGATGG 59.023 38.462 0.00 0.00 34.06 3.51
190 191 7.363268 GCTTTAAAAGATGTTCTCATGGATGGT 60.363 37.037 0.00 0.00 34.06 3.55
191 192 7.630242 TTAAAAGATGTTCTCATGGATGGTC 57.370 36.000 0.00 0.00 34.06 4.02
192 193 5.447778 AAAGATGTTCTCATGGATGGTCT 57.552 39.130 0.00 0.00 34.06 3.85
193 194 5.447778 AAGATGTTCTCATGGATGGTCTT 57.552 39.130 0.00 0.00 34.06 3.01
194 195 5.033589 AGATGTTCTCATGGATGGTCTTC 57.966 43.478 0.00 0.00 34.06 2.87
195 196 3.634397 TGTTCTCATGGATGGTCTTCC 57.366 47.619 0.00 0.00 36.24 3.46
196 197 2.093500 TGTTCTCATGGATGGTCTTCCG 60.093 50.000 0.00 0.00 38.74 4.30
197 198 2.159179 TCTCATGGATGGTCTTCCGA 57.841 50.000 0.00 0.00 38.74 4.55
198 199 1.757118 TCTCATGGATGGTCTTCCGAC 59.243 52.381 0.00 0.00 38.74 4.79
199 200 0.459899 TCATGGATGGTCTTCCGACG 59.540 55.000 0.00 0.00 41.16 5.12
200 201 0.459899 CATGGATGGTCTTCCGACGA 59.540 55.000 0.00 0.00 41.16 4.20
201 202 0.747255 ATGGATGGTCTTCCGACGAG 59.253 55.000 0.00 0.00 41.16 4.18
202 203 1.227002 GGATGGTCTTCCGACGAGC 60.227 63.158 0.00 0.00 41.16 5.03
203 204 1.511305 GATGGTCTTCCGACGAGCA 59.489 57.895 8.98 8.98 42.30 4.26
204 205 0.526524 GATGGTCTTCCGACGAGCAG 60.527 60.000 11.79 0.00 41.52 4.24
205 206 0.965866 ATGGTCTTCCGACGAGCAGA 60.966 55.000 11.79 0.00 41.52 4.26
206 207 1.153997 GGTCTTCCGACGAGCAGAC 60.154 63.158 0.00 4.51 41.16 3.51
207 208 1.153997 GTCTTCCGACGAGCAGACC 60.154 63.158 0.00 0.00 31.16 3.85
208 209 1.602605 TCTTCCGACGAGCAGACCA 60.603 57.895 0.00 0.00 0.00 4.02
209 210 1.176619 TCTTCCGACGAGCAGACCAA 61.177 55.000 0.00 0.00 0.00 3.67
210 211 0.319555 CTTCCGACGAGCAGACCAAA 60.320 55.000 0.00 0.00 0.00 3.28
211 212 0.320374 TTCCGACGAGCAGACCAAAT 59.680 50.000 0.00 0.00 0.00 2.32
212 213 0.320374 TCCGACGAGCAGACCAAATT 59.680 50.000 0.00 0.00 0.00 1.82
213 214 0.443869 CCGACGAGCAGACCAAATTG 59.556 55.000 0.00 0.00 0.00 2.32
214 215 0.179215 CGACGAGCAGACCAAATTGC 60.179 55.000 0.00 0.00 40.57 3.56
215 216 0.169009 GACGAGCAGACCAAATTGCC 59.831 55.000 0.00 0.00 41.17 4.52
216 217 1.244019 ACGAGCAGACCAAATTGCCC 61.244 55.000 0.00 0.00 41.17 5.36
217 218 1.243342 CGAGCAGACCAAATTGCCCA 61.243 55.000 0.00 0.00 41.17 5.36
218 219 1.188863 GAGCAGACCAAATTGCCCAT 58.811 50.000 0.00 0.00 41.17 4.00
219 220 2.378038 GAGCAGACCAAATTGCCCATA 58.622 47.619 0.00 0.00 41.17 2.74
220 221 2.360165 GAGCAGACCAAATTGCCCATAG 59.640 50.000 0.00 0.00 41.17 2.23
221 222 2.102578 GCAGACCAAATTGCCCATAGT 58.897 47.619 0.00 0.00 34.28 2.12
222 223 2.159198 GCAGACCAAATTGCCCATAGTG 60.159 50.000 0.00 0.00 34.28 2.74
223 224 3.091545 CAGACCAAATTGCCCATAGTGT 58.908 45.455 0.00 0.00 0.00 3.55
224 225 3.091545 AGACCAAATTGCCCATAGTGTG 58.908 45.455 0.00 0.00 0.00 3.82
225 226 3.088532 GACCAAATTGCCCATAGTGTGA 58.911 45.455 0.00 0.00 0.00 3.58
226 227 3.701040 GACCAAATTGCCCATAGTGTGAT 59.299 43.478 0.00 0.00 0.00 3.06
227 228 3.448301 ACCAAATTGCCCATAGTGTGATG 59.552 43.478 0.00 0.00 0.00 3.07
228 229 3.700539 CCAAATTGCCCATAGTGTGATGA 59.299 43.478 0.00 0.00 0.00 2.92
229 230 4.342951 CCAAATTGCCCATAGTGTGATGAT 59.657 41.667 0.00 0.00 0.00 2.45
230 231 5.508489 CCAAATTGCCCATAGTGTGATGATC 60.508 44.000 0.00 0.00 0.00 2.92
231 232 3.929955 TTGCCCATAGTGTGATGATCA 57.070 42.857 0.00 0.00 0.00 2.92
232 233 4.442401 TTGCCCATAGTGTGATGATCAT 57.558 40.909 8.25 8.25 0.00 2.45
233 234 4.011966 TGCCCATAGTGTGATGATCATC 57.988 45.455 25.91 25.91 38.29 2.92
234 235 3.244665 TGCCCATAGTGTGATGATCATCC 60.245 47.826 28.61 20.71 37.02 3.51
235 236 3.008813 GCCCATAGTGTGATGATCATCCT 59.991 47.826 28.61 21.16 37.02 3.24
236 237 4.576879 CCCATAGTGTGATGATCATCCTG 58.423 47.826 28.61 16.66 37.02 3.86
237 238 4.565028 CCCATAGTGTGATGATCATCCTGG 60.565 50.000 28.61 22.39 37.02 4.45
238 239 4.041321 CCATAGTGTGATGATCATCCTGGT 59.959 45.833 28.61 15.54 37.02 4.00
239 240 3.555527 AGTGTGATGATCATCCTGGTG 57.444 47.619 28.61 0.00 37.02 4.17
240 241 3.109928 AGTGTGATGATCATCCTGGTGA 58.890 45.455 28.61 9.79 37.02 4.02
241 242 3.520721 AGTGTGATGATCATCCTGGTGAA 59.479 43.478 28.61 9.10 37.02 3.18
242 243 3.624861 GTGTGATGATCATCCTGGTGAAC 59.375 47.826 28.61 19.35 37.02 3.18
243 244 3.520721 TGTGATGATCATCCTGGTGAACT 59.479 43.478 28.61 0.00 37.02 3.01
244 245 4.125703 GTGATGATCATCCTGGTGAACTC 58.874 47.826 28.61 5.52 37.02 3.01
245 246 3.776417 TGATGATCATCCTGGTGAACTCA 59.224 43.478 28.61 8.03 37.02 3.41
246 247 4.225717 TGATGATCATCCTGGTGAACTCAA 59.774 41.667 28.61 6.36 37.02 3.02
247 248 4.639078 TGATCATCCTGGTGAACTCAAA 57.361 40.909 0.00 0.00 0.00 2.69
248 249 4.984295 TGATCATCCTGGTGAACTCAAAA 58.016 39.130 0.00 0.00 0.00 2.44
249 250 5.573219 TGATCATCCTGGTGAACTCAAAAT 58.427 37.500 0.00 0.00 0.00 1.82
250 251 5.416639 TGATCATCCTGGTGAACTCAAAATG 59.583 40.000 0.00 0.00 0.00 2.32
251 252 4.984295 TCATCCTGGTGAACTCAAAATGA 58.016 39.130 0.00 0.00 0.00 2.57
255 256 4.349636 TCCTGGTGAACTCAAAATGAGGTA 59.650 41.667 11.70 0.00 45.99 3.08
256 257 4.455877 CCTGGTGAACTCAAAATGAGGTAC 59.544 45.833 11.70 7.17 45.99 3.34
257 258 5.304686 TGGTGAACTCAAAATGAGGTACT 57.695 39.130 11.70 0.00 45.99 2.73
258 259 5.063204 TGGTGAACTCAAAATGAGGTACTG 58.937 41.667 11.70 0.00 45.99 2.74
259 260 5.063880 GGTGAACTCAAAATGAGGTACTGT 58.936 41.667 11.70 0.00 45.99 3.55
260 261 5.049405 GGTGAACTCAAAATGAGGTACTGTG 60.049 44.000 11.70 0.00 45.99 3.66
261 262 5.527582 GTGAACTCAAAATGAGGTACTGTGT 59.472 40.000 11.70 0.00 45.99 3.72
262 263 5.758296 TGAACTCAAAATGAGGTACTGTGTC 59.242 40.000 11.70 0.00 45.99 3.67
263 264 4.750098 AACTCAAAATGAGGTACTGTGTCG 59.250 41.667 11.70 0.00 43.79 4.35
264 265 4.307432 CTCAAAATGAGGTACTGTGTCGT 58.693 43.478 0.00 0.00 41.55 4.34
265 266 4.055360 TCAAAATGAGGTACTGTGTCGTG 58.945 43.478 0.00 0.00 41.55 4.35
266 267 2.080286 AATGAGGTACTGTGTCGTGC 57.920 50.000 0.00 0.00 41.55 5.34
267 268 0.966179 ATGAGGTACTGTGTCGTGCA 59.034 50.000 0.00 0.00 41.55 4.57
268 269 0.966179 TGAGGTACTGTGTCGTGCAT 59.034 50.000 0.00 0.00 41.55 3.96
269 270 1.336795 TGAGGTACTGTGTCGTGCATG 60.337 52.381 0.00 0.00 41.55 4.06
270 271 0.966179 AGGTACTGTGTCGTGCATGA 59.034 50.000 3.97 3.97 37.18 3.07
271 272 1.343142 AGGTACTGTGTCGTGCATGAA 59.657 47.619 10.93 0.00 37.18 2.57
272 273 1.726791 GGTACTGTGTCGTGCATGAAG 59.273 52.381 10.93 7.38 0.00 3.02
273 274 2.609491 GGTACTGTGTCGTGCATGAAGA 60.609 50.000 10.93 0.00 0.00 2.87
274 275 2.238942 ACTGTGTCGTGCATGAAGAA 57.761 45.000 10.93 0.00 0.00 2.52
275 276 2.771089 ACTGTGTCGTGCATGAAGAAT 58.229 42.857 10.93 0.00 0.00 2.40
276 277 3.925379 ACTGTGTCGTGCATGAAGAATA 58.075 40.909 10.93 0.00 0.00 1.75
277 278 3.928992 ACTGTGTCGTGCATGAAGAATAG 59.071 43.478 10.93 9.52 0.00 1.73
278 279 2.672874 TGTGTCGTGCATGAAGAATAGC 59.327 45.455 10.93 0.00 0.00 2.97
279 280 2.030946 GTGTCGTGCATGAAGAATAGCC 59.969 50.000 10.93 0.00 0.00 3.93
280 281 2.279741 GTCGTGCATGAAGAATAGCCA 58.720 47.619 10.93 0.00 0.00 4.75
281 282 2.286294 GTCGTGCATGAAGAATAGCCAG 59.714 50.000 10.93 0.00 0.00 4.85
282 283 1.600957 CGTGCATGAAGAATAGCCAGG 59.399 52.381 0.00 0.00 0.00 4.45
283 284 1.336125 GTGCATGAAGAATAGCCAGGC 59.664 52.381 1.84 1.84 38.00 4.85
284 285 1.213678 TGCATGAAGAATAGCCAGGCT 59.786 47.619 20.63 20.63 43.41 4.58
285 286 1.878734 GCATGAAGAATAGCCAGGCTC 59.121 52.381 20.38 3.68 40.44 4.70
286 287 2.486907 GCATGAAGAATAGCCAGGCTCT 60.487 50.000 20.38 5.01 40.44 4.09
287 288 2.996249 TGAAGAATAGCCAGGCTCTG 57.004 50.000 20.38 0.00 40.44 3.35
288 289 2.470990 TGAAGAATAGCCAGGCTCTGA 58.529 47.619 20.38 0.00 40.44 3.27
289 290 2.840038 TGAAGAATAGCCAGGCTCTGAA 59.160 45.455 20.38 0.00 40.44 3.02
290 291 3.264193 TGAAGAATAGCCAGGCTCTGAAA 59.736 43.478 20.38 0.00 40.44 2.69
291 292 3.557228 AGAATAGCCAGGCTCTGAAAG 57.443 47.619 20.38 0.00 40.44 2.62
292 293 3.110705 AGAATAGCCAGGCTCTGAAAGA 58.889 45.455 20.38 0.00 43.69 2.52
293 294 3.715834 AGAATAGCCAGGCTCTGAAAGAT 59.284 43.478 20.38 0.00 45.62 2.40
294 295 2.996249 TAGCCAGGCTCTGAAAGATG 57.004 50.000 20.38 0.00 45.62 2.90
295 296 0.990374 AGCCAGGCTCTGAAAGATGT 59.010 50.000 8.70 0.00 45.62 3.06
296 297 1.353694 AGCCAGGCTCTGAAAGATGTT 59.646 47.619 8.70 0.00 45.62 2.71
297 298 1.742268 GCCAGGCTCTGAAAGATGTTC 59.258 52.381 3.29 0.00 45.62 3.18
298 299 2.617532 GCCAGGCTCTGAAAGATGTTCT 60.618 50.000 3.29 0.00 45.62 3.01
299 300 3.269178 CCAGGCTCTGAAAGATGTTCTC 58.731 50.000 4.00 0.00 45.62 2.87
300 301 3.307269 CCAGGCTCTGAAAGATGTTCTCA 60.307 47.826 4.00 0.00 45.62 3.27
301 302 4.515361 CAGGCTCTGAAAGATGTTCTCAT 58.485 43.478 0.00 0.00 45.62 2.90
302 303 4.333095 CAGGCTCTGAAAGATGTTCTCATG 59.667 45.833 0.00 0.00 45.62 3.07
303 304 3.626670 GGCTCTGAAAGATGTTCTCATGG 59.373 47.826 0.00 0.00 45.62 3.66
304 305 4.511527 GCTCTGAAAGATGTTCTCATGGA 58.488 43.478 0.00 0.00 45.62 3.41
305 306 4.571580 GCTCTGAAAGATGTTCTCATGGAG 59.428 45.833 0.00 0.00 45.62 3.86
306 307 5.732633 CTCTGAAAGATGTTCTCATGGAGT 58.267 41.667 0.00 0.00 45.62 3.85
307 308 6.629068 GCTCTGAAAGATGTTCTCATGGAGTA 60.629 42.308 0.00 0.00 45.62 2.59
308 309 6.634805 TCTGAAAGATGTTCTCATGGAGTAC 58.365 40.000 0.00 0.00 38.67 2.73
309 310 6.438741 TCTGAAAGATGTTCTCATGGAGTACT 59.561 38.462 0.00 0.00 38.67 2.73
310 311 6.634805 TGAAAGATGTTCTCATGGAGTACTC 58.365 40.000 14.87 14.87 32.47 2.59
311 312 8.110172 CTGAAAGATGTTCTCATGGAGTACTCC 61.110 44.444 31.61 31.61 43.72 3.85
328 329 9.543783 GGAGTACTCCTTAATTAATGATTTCGT 57.456 33.333 31.12 0.00 46.16 3.85
333 334 9.892130 ACTCCTTAATTAATGATTTCGTCTCTT 57.108 29.630 0.00 0.00 0.00 2.85
336 337 9.638300 CCTTAATTAATGATTTCGTCTCTTTCG 57.362 33.333 0.00 0.00 0.00 3.46
338 339 9.967245 TTAATTAATGATTTCGTCTCTTTCGTG 57.033 29.630 0.00 0.00 0.00 4.35
339 340 7.827819 ATTAATGATTTCGTCTCTTTCGTGA 57.172 32.000 0.00 0.00 0.00 4.35
340 341 7.827819 TTAATGATTTCGTCTCTTTCGTGAT 57.172 32.000 0.00 0.00 0.00 3.06
341 342 5.709011 ATGATTTCGTCTCTTTCGTGATG 57.291 39.130 0.00 0.00 0.00 3.07
342 343 4.556233 TGATTTCGTCTCTTTCGTGATGT 58.444 39.130 0.00 0.00 0.00 3.06
343 344 4.988540 TGATTTCGTCTCTTTCGTGATGTT 59.011 37.500 0.00 0.00 0.00 2.71
344 345 6.153756 TGATTTCGTCTCTTTCGTGATGTTA 58.846 36.000 0.00 0.00 0.00 2.41
345 346 6.308041 TGATTTCGTCTCTTTCGTGATGTTAG 59.692 38.462 0.00 0.00 0.00 2.34
346 347 4.761235 TCGTCTCTTTCGTGATGTTAGT 57.239 40.909 0.00 0.00 0.00 2.24
386 388 2.685380 CTGAGAACCGGCCTCCCT 60.685 66.667 18.40 2.22 0.00 4.20
411 413 1.700042 GGGCATCTCAGGATTCCCGT 61.700 60.000 0.00 0.00 43.43 5.28
416 418 1.651737 TCTCAGGATTCCCGTCCAAA 58.348 50.000 0.00 0.00 40.90 3.28
420 422 3.111405 GGATTCCCGTCCAAATCCC 57.889 57.895 3.26 0.00 43.40 3.85
422 424 1.133482 GGATTCCCGTCCAAATCCCAT 60.133 52.381 3.26 0.00 43.40 4.00
423 425 2.107552 GGATTCCCGTCCAAATCCCATA 59.892 50.000 3.26 0.00 43.40 2.74
424 426 2.721425 TTCCCGTCCAAATCCCATAC 57.279 50.000 0.00 0.00 0.00 2.39
426 428 2.201830 TCCCGTCCAAATCCCATACTT 58.798 47.619 0.00 0.00 0.00 2.24
428 430 2.572290 CCGTCCAAATCCCATACTTCC 58.428 52.381 0.00 0.00 0.00 3.46
429 431 2.210116 CGTCCAAATCCCATACTTCCG 58.790 52.381 0.00 0.00 0.00 4.30
430 432 2.159014 CGTCCAAATCCCATACTTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
854 856 1.743252 CCTCCAGAAGCGCAAGGAC 60.743 63.158 11.47 0.00 38.28 3.85
962 979 2.159653 CGTGCGAGAAAAATTCAGAGGG 60.160 50.000 0.00 0.00 0.00 4.30
968 985 4.494855 CGAGAAAAATTCAGAGGGAATCGC 60.495 45.833 0.00 0.00 45.46 4.58
1479 1517 0.317854 GGTTCTGCGAAAGTTGTGCC 60.318 55.000 0.00 0.00 0.00 5.01
1508 1546 4.472286 CGTGGATGTAAATGTGGTGAAAC 58.528 43.478 0.00 0.00 0.00 2.78
1578 1616 5.504010 CGCACACTACACAAAATCTCAAAGT 60.504 40.000 0.00 0.00 0.00 2.66
1596 1635 6.219473 TCAAAGTTCAGTTTGCACTTTCAAA 58.781 32.000 4.29 0.00 40.77 2.69
1648 1687 2.352032 GCCTACGAGCTGTGACCCT 61.352 63.158 0.00 0.00 0.00 4.34
1692 1731 4.948608 TGCTACTAGAGACAGAAGAACG 57.051 45.455 0.00 0.00 0.00 3.95
1697 1736 2.904011 AGAGACAGAAGAACGTAGCG 57.096 50.000 0.00 0.00 0.00 4.26
1880 1958 2.043248 GGAGGCGGAGGGTAGTGA 60.043 66.667 0.00 0.00 0.00 3.41
2103 2187 2.915659 TCCTGAACACGCCGTCCT 60.916 61.111 0.00 0.00 0.00 3.85
2244 2328 1.846007 TTCATCCCCCGTTGAATTGG 58.154 50.000 0.00 0.00 0.00 3.16
2245 2329 0.701731 TCATCCCCCGTTGAATTGGT 59.298 50.000 0.00 0.00 0.00 3.67
2246 2330 1.102978 CATCCCCCGTTGAATTGGTC 58.897 55.000 0.00 0.00 0.00 4.02
2247 2331 0.701731 ATCCCCCGTTGAATTGGTCA 59.298 50.000 0.00 0.00 0.00 4.02
2251 2335 0.098728 CCCGTTGAATTGGTCATCGC 59.901 55.000 2.13 0.00 44.57 4.58
2278 2362 1.742146 CCTGGATCGAATCGGAGCA 59.258 57.895 1.76 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.386985 AACGTCGACGGAGCTTTCTC 60.387 55.000 37.89 0.00 44.95 2.87
1 2 0.031721 AAACGTCGACGGAGCTTTCT 59.968 50.000 37.89 14.95 44.95 2.52
2 3 1.689959 TAAACGTCGACGGAGCTTTC 58.310 50.000 37.89 0.00 44.95 2.62
3 4 2.094854 AGATAAACGTCGACGGAGCTTT 60.095 45.455 37.89 29.25 44.95 3.51
4 5 1.471684 AGATAAACGTCGACGGAGCTT 59.528 47.619 37.89 26.11 44.95 3.74
5 6 1.093159 AGATAAACGTCGACGGAGCT 58.907 50.000 37.89 27.20 44.95 4.09
6 7 1.905449 AAGATAAACGTCGACGGAGC 58.095 50.000 37.89 25.59 44.95 4.70
7 8 3.495193 TCAAAGATAAACGTCGACGGAG 58.505 45.455 37.89 14.82 44.95 4.63
8 9 3.058016 ACTCAAAGATAAACGTCGACGGA 60.058 43.478 37.89 24.37 44.95 4.69
9 10 3.240069 ACTCAAAGATAAACGTCGACGG 58.760 45.455 37.89 21.83 44.95 4.79
10 11 5.219914 GGTTACTCAAAGATAAACGTCGACG 60.220 44.000 34.58 34.58 46.33 5.12
11 12 5.061435 GGGTTACTCAAAGATAAACGTCGAC 59.939 44.000 5.18 5.18 0.00 4.20
12 13 5.163513 GGGTTACTCAAAGATAAACGTCGA 58.836 41.667 0.00 0.00 0.00 4.20
13 14 4.030977 CGGGTTACTCAAAGATAAACGTCG 59.969 45.833 0.00 0.00 0.00 5.12
14 15 4.328169 CCGGGTTACTCAAAGATAAACGTC 59.672 45.833 0.00 0.00 0.00 4.34
15 16 4.248058 CCGGGTTACTCAAAGATAAACGT 58.752 43.478 0.00 0.00 0.00 3.99
16 17 4.248058 ACCGGGTTACTCAAAGATAAACG 58.752 43.478 6.32 0.00 0.00 3.60
17 18 5.618418 GCAACCGGGTTACTCAAAGATAAAC 60.618 44.000 12.95 0.00 0.00 2.01
18 19 4.456566 GCAACCGGGTTACTCAAAGATAAA 59.543 41.667 12.95 0.00 0.00 1.40
19 20 4.004982 GCAACCGGGTTACTCAAAGATAA 58.995 43.478 12.95 0.00 0.00 1.75
20 21 3.602483 GCAACCGGGTTACTCAAAGATA 58.398 45.455 12.95 0.00 0.00 1.98
21 22 2.433436 GCAACCGGGTTACTCAAAGAT 58.567 47.619 12.95 0.00 0.00 2.40
22 23 1.874739 CGCAACCGGGTTACTCAAAGA 60.875 52.381 12.95 0.00 0.00 2.52
23 24 0.515564 CGCAACCGGGTTACTCAAAG 59.484 55.000 12.95 0.00 0.00 2.77
24 25 2.619362 CGCAACCGGGTTACTCAAA 58.381 52.632 12.95 0.00 0.00 2.69
25 26 4.364817 CGCAACCGGGTTACTCAA 57.635 55.556 12.95 0.00 0.00 3.02
43 44 3.885521 GCAAGAGATGGCTGGCGC 61.886 66.667 0.00 0.00 0.00 6.53
44 45 1.748122 AAGCAAGAGATGGCTGGCG 60.748 57.895 0.00 0.00 40.93 5.69
45 46 1.807886 CAAGCAAGAGATGGCTGGC 59.192 57.895 0.00 0.00 40.93 4.85
46 47 0.963856 TGCAAGCAAGAGATGGCTGG 60.964 55.000 0.00 0.00 40.93 4.85
47 48 1.065701 GATGCAAGCAAGAGATGGCTG 59.934 52.381 0.00 0.00 40.93 4.85
48 49 1.340697 TGATGCAAGCAAGAGATGGCT 60.341 47.619 0.00 0.00 43.46 4.75
49 50 1.065701 CTGATGCAAGCAAGAGATGGC 59.934 52.381 0.00 0.00 0.00 4.40
50 51 1.676529 CCTGATGCAAGCAAGAGATGG 59.323 52.381 0.00 0.00 0.00 3.51
51 52 2.366533 ACCTGATGCAAGCAAGAGATG 58.633 47.619 0.00 0.00 0.00 2.90
52 53 2.803030 ACCTGATGCAAGCAAGAGAT 57.197 45.000 0.00 0.00 0.00 2.75
53 54 2.574006 AACCTGATGCAAGCAAGAGA 57.426 45.000 0.00 0.00 0.00 3.10
54 55 3.128242 CCTAAACCTGATGCAAGCAAGAG 59.872 47.826 0.00 0.00 0.00 2.85
55 56 3.084039 CCTAAACCTGATGCAAGCAAGA 58.916 45.455 0.00 0.00 0.00 3.02
56 57 2.416431 GCCTAAACCTGATGCAAGCAAG 60.416 50.000 0.00 0.00 0.00 4.01
57 58 1.545582 GCCTAAACCTGATGCAAGCAA 59.454 47.619 0.00 0.00 0.00 3.91
58 59 1.176527 GCCTAAACCTGATGCAAGCA 58.823 50.000 0.00 0.00 0.00 3.91
59 60 1.467920 AGCCTAAACCTGATGCAAGC 58.532 50.000 0.00 0.00 0.00 4.01
60 61 3.084039 TGAAGCCTAAACCTGATGCAAG 58.916 45.455 0.00 0.00 0.00 4.01
61 62 3.153369 TGAAGCCTAAACCTGATGCAA 57.847 42.857 0.00 0.00 0.00 4.08
62 63 2.819608 GTTGAAGCCTAAACCTGATGCA 59.180 45.455 0.00 0.00 0.00 3.96
63 64 2.819608 TGTTGAAGCCTAAACCTGATGC 59.180 45.455 0.00 0.00 0.00 3.91
64 65 4.701651 TGATGTTGAAGCCTAAACCTGATG 59.298 41.667 0.00 0.00 0.00 3.07
65 66 4.922206 TGATGTTGAAGCCTAAACCTGAT 58.078 39.130 0.00 0.00 0.00 2.90
66 67 4.365514 TGATGTTGAAGCCTAAACCTGA 57.634 40.909 0.00 0.00 0.00 3.86
67 68 4.520492 AGTTGATGTTGAAGCCTAAACCTG 59.480 41.667 0.00 0.00 0.00 4.00
68 69 4.729868 AGTTGATGTTGAAGCCTAAACCT 58.270 39.130 0.00 0.00 0.00 3.50
69 70 5.221244 ACAAGTTGATGTTGAAGCCTAAACC 60.221 40.000 10.54 0.00 0.00 3.27
70 71 5.687285 CACAAGTTGATGTTGAAGCCTAAAC 59.313 40.000 10.54 0.00 0.00 2.01
71 72 5.221224 CCACAAGTTGATGTTGAAGCCTAAA 60.221 40.000 10.54 0.00 0.00 1.85
72 73 4.278170 CCACAAGTTGATGTTGAAGCCTAA 59.722 41.667 10.54 0.00 0.00 2.69
73 74 3.820467 CCACAAGTTGATGTTGAAGCCTA 59.180 43.478 10.54 0.00 0.00 3.93
74 75 2.624838 CCACAAGTTGATGTTGAAGCCT 59.375 45.455 10.54 0.00 0.00 4.58
75 76 2.863704 GCCACAAGTTGATGTTGAAGCC 60.864 50.000 10.54 0.00 0.00 4.35
76 77 2.035066 AGCCACAAGTTGATGTTGAAGC 59.965 45.455 10.54 3.32 0.00 3.86
77 78 3.316029 TGAGCCACAAGTTGATGTTGAAG 59.684 43.478 10.54 0.00 0.00 3.02
78 79 3.286353 TGAGCCACAAGTTGATGTTGAA 58.714 40.909 10.54 0.00 0.00 2.69
79 80 2.929641 TGAGCCACAAGTTGATGTTGA 58.070 42.857 10.54 0.00 0.00 3.18
80 81 3.571571 CATGAGCCACAAGTTGATGTTG 58.428 45.455 10.54 0.00 0.00 3.33
81 82 2.559668 CCATGAGCCACAAGTTGATGTT 59.440 45.455 10.54 0.00 0.00 2.71
82 83 2.165167 CCATGAGCCACAAGTTGATGT 58.835 47.619 10.54 0.00 0.00 3.06
83 84 1.135199 GCCATGAGCCACAAGTTGATG 60.135 52.381 10.54 4.28 34.35 3.07
84 85 1.180029 GCCATGAGCCACAAGTTGAT 58.820 50.000 10.54 0.00 34.35 2.57
85 86 1.236616 CGCCATGAGCCACAAGTTGA 61.237 55.000 10.54 0.00 38.78 3.18
86 87 1.210931 CGCCATGAGCCACAAGTTG 59.789 57.895 0.00 0.00 38.78 3.16
87 88 0.823356 AACGCCATGAGCCACAAGTT 60.823 50.000 0.00 0.00 38.78 2.66
88 89 0.036164 TAACGCCATGAGCCACAAGT 59.964 50.000 0.00 0.00 38.78 3.16
89 90 1.331756 GATAACGCCATGAGCCACAAG 59.668 52.381 0.00 0.00 38.78 3.16
90 91 1.065491 AGATAACGCCATGAGCCACAA 60.065 47.619 0.00 0.00 38.78 3.33
91 92 0.541392 AGATAACGCCATGAGCCACA 59.459 50.000 0.00 0.00 38.78 4.17
92 93 2.408050 CTAGATAACGCCATGAGCCAC 58.592 52.381 0.00 0.00 38.78 5.01
93 94 1.270305 GCTAGATAACGCCATGAGCCA 60.270 52.381 0.00 0.00 38.78 4.75
94 95 1.001406 AGCTAGATAACGCCATGAGCC 59.999 52.381 0.00 0.00 38.78 4.70
95 96 2.064762 CAGCTAGATAACGCCATGAGC 58.935 52.381 0.00 0.00 38.52 4.26
96 97 2.036475 ACCAGCTAGATAACGCCATGAG 59.964 50.000 0.00 0.00 0.00 2.90
97 98 2.039418 ACCAGCTAGATAACGCCATGA 58.961 47.619 0.00 0.00 0.00 3.07
98 99 2.533266 ACCAGCTAGATAACGCCATG 57.467 50.000 0.00 0.00 0.00 3.66
99 100 2.434336 TGAACCAGCTAGATAACGCCAT 59.566 45.455 0.00 0.00 0.00 4.40
100 101 1.828595 TGAACCAGCTAGATAACGCCA 59.171 47.619 0.00 0.00 0.00 5.69
101 102 2.474816 CTGAACCAGCTAGATAACGCC 58.525 52.381 0.00 0.00 0.00 5.68
113 114 4.769488 TCCTATATAGCTGAGCTGAACCAG 59.231 45.833 18.79 7.49 40.10 4.00
114 115 4.740902 TCCTATATAGCTGAGCTGAACCA 58.259 43.478 18.79 0.00 40.10 3.67
115 116 5.730296 TTCCTATATAGCTGAGCTGAACC 57.270 43.478 18.79 0.00 40.10 3.62
116 117 7.330700 GTCAATTCCTATATAGCTGAGCTGAAC 59.669 40.741 18.79 0.00 40.10 3.18
117 118 7.015584 TGTCAATTCCTATATAGCTGAGCTGAA 59.984 37.037 18.79 11.08 40.10 3.02
118 119 6.494835 TGTCAATTCCTATATAGCTGAGCTGA 59.505 38.462 18.79 5.16 40.10 4.26
119 120 6.695429 TGTCAATTCCTATATAGCTGAGCTG 58.305 40.000 18.79 0.00 40.10 4.24
120 121 6.924913 TGTCAATTCCTATATAGCTGAGCT 57.075 37.500 13.25 13.25 43.41 4.09
121 122 7.969536 TTTGTCAATTCCTATATAGCTGAGC 57.030 36.000 4.04 0.00 0.00 4.26
122 123 8.778358 GGTTTTGTCAATTCCTATATAGCTGAG 58.222 37.037 4.04 0.00 0.00 3.35
123 124 8.271458 TGGTTTTGTCAATTCCTATATAGCTGA 58.729 33.333 4.04 1.90 0.00 4.26
124 125 8.450578 TGGTTTTGTCAATTCCTATATAGCTG 57.549 34.615 4.04 0.00 0.00 4.24
125 126 9.071276 CATGGTTTTGTCAATTCCTATATAGCT 57.929 33.333 4.04 0.00 0.00 3.32
126 127 8.299570 CCATGGTTTTGTCAATTCCTATATAGC 58.700 37.037 2.57 0.00 0.00 2.97
127 128 9.573166 TCCATGGTTTTGTCAATTCCTATATAG 57.427 33.333 12.58 2.46 0.00 1.31
131 132 8.863086 CATATCCATGGTTTTGTCAATTCCTAT 58.137 33.333 12.58 0.00 0.00 2.57
132 133 7.838696 ACATATCCATGGTTTTGTCAATTCCTA 59.161 33.333 12.58 0.00 36.39 2.94
133 134 6.669154 ACATATCCATGGTTTTGTCAATTCCT 59.331 34.615 12.58 0.00 36.39 3.36
134 135 6.877236 ACATATCCATGGTTTTGTCAATTCC 58.123 36.000 12.58 0.00 36.39 3.01
135 136 8.411318 GAACATATCCATGGTTTTGTCAATTC 57.589 34.615 16.33 8.83 36.39 2.17
152 153 8.000780 ACATCTTTTAAAGCCTGGAACATATC 57.999 34.615 0.00 0.00 38.20 1.63
153 154 7.961326 ACATCTTTTAAAGCCTGGAACATAT 57.039 32.000 0.00 0.00 38.20 1.78
154 155 7.669722 AGAACATCTTTTAAAGCCTGGAACATA 59.330 33.333 0.00 0.00 38.20 2.29
155 156 6.494835 AGAACATCTTTTAAAGCCTGGAACAT 59.505 34.615 0.00 0.00 38.20 2.71
156 157 5.833131 AGAACATCTTTTAAAGCCTGGAACA 59.167 36.000 0.00 0.00 0.00 3.18
157 158 6.016276 TGAGAACATCTTTTAAAGCCTGGAAC 60.016 38.462 0.00 0.00 0.00 3.62
158 159 6.068010 TGAGAACATCTTTTAAAGCCTGGAA 58.932 36.000 0.00 0.00 0.00 3.53
159 160 5.630121 TGAGAACATCTTTTAAAGCCTGGA 58.370 37.500 0.00 0.00 0.00 3.86
160 161 5.964958 TGAGAACATCTTTTAAAGCCTGG 57.035 39.130 0.00 0.00 0.00 4.45
161 162 6.151648 TCCATGAGAACATCTTTTAAAGCCTG 59.848 38.462 0.00 3.13 34.15 4.85
162 163 6.248433 TCCATGAGAACATCTTTTAAAGCCT 58.752 36.000 0.00 0.00 34.15 4.58
163 164 6.515272 TCCATGAGAACATCTTTTAAAGCC 57.485 37.500 0.00 0.00 34.15 4.35
164 165 6.976925 CCATCCATGAGAACATCTTTTAAAGC 59.023 38.462 0.00 0.00 34.15 3.51
165 166 8.059798 ACCATCCATGAGAACATCTTTTAAAG 57.940 34.615 0.00 0.00 34.15 1.85
166 167 7.890127 AGACCATCCATGAGAACATCTTTTAAA 59.110 33.333 0.00 0.00 34.15 1.52
167 168 7.405292 AGACCATCCATGAGAACATCTTTTAA 58.595 34.615 0.00 0.00 34.15 1.52
168 169 6.962182 AGACCATCCATGAGAACATCTTTTA 58.038 36.000 0.00 0.00 34.15 1.52
169 170 5.824421 AGACCATCCATGAGAACATCTTTT 58.176 37.500 0.00 0.00 34.15 2.27
170 171 5.447778 AGACCATCCATGAGAACATCTTT 57.552 39.130 0.00 0.00 34.15 2.52
171 172 5.435291 GAAGACCATCCATGAGAACATCTT 58.565 41.667 0.00 1.37 34.15 2.40
172 173 4.141528 GGAAGACCATCCATGAGAACATCT 60.142 45.833 0.00 0.00 39.42 2.90
173 174 4.133078 GGAAGACCATCCATGAGAACATC 58.867 47.826 0.00 0.00 39.42 3.06
174 175 3.432749 CGGAAGACCATCCATGAGAACAT 60.433 47.826 0.00 0.00 39.61 2.71
175 176 2.093500 CGGAAGACCATCCATGAGAACA 60.093 50.000 0.00 0.00 39.61 3.18
176 177 2.168521 TCGGAAGACCATCCATGAGAAC 59.831 50.000 0.00 0.00 39.61 3.01
177 178 2.466846 TCGGAAGACCATCCATGAGAA 58.533 47.619 0.00 0.00 39.61 2.87
178 179 2.159179 TCGGAAGACCATCCATGAGA 57.841 50.000 0.00 0.00 39.61 3.27
190 191 1.176619 TTGGTCTGCTCGTCGGAAGA 61.177 55.000 0.00 0.00 38.16 2.87
191 192 0.319555 TTTGGTCTGCTCGTCGGAAG 60.320 55.000 0.00 0.00 0.00 3.46
192 193 0.320374 ATTTGGTCTGCTCGTCGGAA 59.680 50.000 0.00 0.00 0.00 4.30
193 194 0.320374 AATTTGGTCTGCTCGTCGGA 59.680 50.000 0.00 0.00 0.00 4.55
194 195 0.443869 CAATTTGGTCTGCTCGTCGG 59.556 55.000 0.00 0.00 0.00 4.79
195 196 0.179215 GCAATTTGGTCTGCTCGTCG 60.179 55.000 0.00 0.00 35.62 5.12
196 197 0.169009 GGCAATTTGGTCTGCTCGTC 59.831 55.000 0.00 0.00 38.65 4.20
197 198 1.244019 GGGCAATTTGGTCTGCTCGT 61.244 55.000 0.00 0.00 38.65 4.18
198 199 1.243342 TGGGCAATTTGGTCTGCTCG 61.243 55.000 0.00 0.00 42.25 5.03
199 200 1.188863 ATGGGCAATTTGGTCTGCTC 58.811 50.000 0.00 0.00 39.63 4.26
200 201 2.291800 ACTATGGGCAATTTGGTCTGCT 60.292 45.455 0.00 0.00 38.65 4.24
201 202 2.102578 ACTATGGGCAATTTGGTCTGC 58.897 47.619 0.00 0.00 37.86 4.26
202 203 3.091545 ACACTATGGGCAATTTGGTCTG 58.908 45.455 0.00 0.00 0.00 3.51
203 204 3.091545 CACACTATGGGCAATTTGGTCT 58.908 45.455 0.00 0.00 0.00 3.85
204 205 3.088532 TCACACTATGGGCAATTTGGTC 58.911 45.455 0.00 0.00 0.00 4.02
205 206 3.168035 TCACACTATGGGCAATTTGGT 57.832 42.857 0.00 0.00 0.00 3.67
206 207 3.700539 TCATCACACTATGGGCAATTTGG 59.299 43.478 0.00 0.00 0.00 3.28
207 208 4.987408 TCATCACACTATGGGCAATTTG 57.013 40.909 0.00 0.00 0.00 2.32
208 209 5.202765 TGATCATCACACTATGGGCAATTT 58.797 37.500 0.00 0.00 0.00 1.82
209 210 4.795469 TGATCATCACACTATGGGCAATT 58.205 39.130 0.00 0.00 0.00 2.32
210 211 4.442401 TGATCATCACACTATGGGCAAT 57.558 40.909 0.00 0.00 0.00 3.56
211 212 3.929955 TGATCATCACACTATGGGCAA 57.070 42.857 0.00 0.00 0.00 4.52
212 213 3.244665 GGATGATCATCACACTATGGGCA 60.245 47.826 31.49 0.00 39.54 5.36
213 214 3.008813 AGGATGATCATCACACTATGGGC 59.991 47.826 31.49 13.79 39.54 5.36
214 215 4.565028 CCAGGATGATCATCACACTATGGG 60.565 50.000 31.49 17.82 39.69 4.00
215 216 4.041321 ACCAGGATGATCATCACACTATGG 59.959 45.833 31.49 26.70 39.69 2.74
216 217 4.995487 CACCAGGATGATCATCACACTATG 59.005 45.833 31.49 19.05 39.69 2.23
217 218 4.903649 TCACCAGGATGATCATCACACTAT 59.096 41.667 31.49 12.76 39.69 2.12
218 219 4.289245 TCACCAGGATGATCATCACACTA 58.711 43.478 31.49 13.19 39.69 2.74
219 220 3.109928 TCACCAGGATGATCATCACACT 58.890 45.455 31.49 19.34 39.69 3.55
220 221 3.548745 TCACCAGGATGATCATCACAC 57.451 47.619 31.49 17.61 39.69 3.82
221 222 3.520721 AGTTCACCAGGATGATCATCACA 59.479 43.478 31.49 9.89 39.69 3.58
222 223 4.125703 GAGTTCACCAGGATGATCATCAC 58.874 47.826 31.49 21.97 39.69 3.06
223 224 3.776417 TGAGTTCACCAGGATGATCATCA 59.224 43.478 31.49 11.82 39.69 3.07
224 225 4.412796 TGAGTTCACCAGGATGATCATC 57.587 45.455 24.90 24.90 39.69 2.92
225 226 4.849813 TTGAGTTCACCAGGATGATCAT 57.150 40.909 8.25 8.25 39.69 2.45
226 227 4.639078 TTTGAGTTCACCAGGATGATCA 57.361 40.909 0.00 0.00 39.69 2.92
227 228 5.649395 TCATTTTGAGTTCACCAGGATGATC 59.351 40.000 0.00 0.00 39.69 2.92
228 229 5.573219 TCATTTTGAGTTCACCAGGATGAT 58.427 37.500 0.00 0.00 39.69 2.45
229 230 4.984295 TCATTTTGAGTTCACCAGGATGA 58.016 39.130 0.00 0.00 39.69 2.92
230 231 4.157289 CCTCATTTTGAGTTCACCAGGATG 59.843 45.833 0.00 0.00 42.80 3.51
231 232 4.202609 ACCTCATTTTGAGTTCACCAGGAT 60.203 41.667 0.00 0.00 42.80 3.24
232 233 3.138283 ACCTCATTTTGAGTTCACCAGGA 59.862 43.478 0.00 0.00 42.80 3.86
233 234 3.490348 ACCTCATTTTGAGTTCACCAGG 58.510 45.455 4.00 0.00 42.80 4.45
234 235 5.180117 CAGTACCTCATTTTGAGTTCACCAG 59.820 44.000 4.00 0.00 42.80 4.00
235 236 5.063204 CAGTACCTCATTTTGAGTTCACCA 58.937 41.667 4.00 0.00 42.80 4.17
236 237 5.049405 CACAGTACCTCATTTTGAGTTCACC 60.049 44.000 4.00 0.00 42.80 4.02
237 238 5.527582 ACACAGTACCTCATTTTGAGTTCAC 59.472 40.000 4.00 0.00 42.80 3.18
238 239 5.680619 ACACAGTACCTCATTTTGAGTTCA 58.319 37.500 4.00 0.00 42.80 3.18
239 240 5.107453 CGACACAGTACCTCATTTTGAGTTC 60.107 44.000 4.00 0.00 42.80 3.01
240 241 4.750098 CGACACAGTACCTCATTTTGAGTT 59.250 41.667 4.00 0.00 42.80 3.01
241 242 4.202223 ACGACACAGTACCTCATTTTGAGT 60.202 41.667 4.00 0.00 42.80 3.41
242 243 4.150627 CACGACACAGTACCTCATTTTGAG 59.849 45.833 0.00 0.00 43.91 3.02
243 244 4.055360 CACGACACAGTACCTCATTTTGA 58.945 43.478 0.00 0.00 0.00 2.69
244 245 3.363970 GCACGACACAGTACCTCATTTTG 60.364 47.826 0.00 0.00 0.00 2.44
245 246 2.806244 GCACGACACAGTACCTCATTTT 59.194 45.455 0.00 0.00 0.00 1.82
246 247 2.224185 TGCACGACACAGTACCTCATTT 60.224 45.455 0.00 0.00 0.00 2.32
247 248 1.343142 TGCACGACACAGTACCTCATT 59.657 47.619 0.00 0.00 0.00 2.57
248 249 0.966179 TGCACGACACAGTACCTCAT 59.034 50.000 0.00 0.00 0.00 2.90
249 250 0.966179 ATGCACGACACAGTACCTCA 59.034 50.000 0.00 0.00 0.00 3.86
250 251 1.067846 TCATGCACGACACAGTACCTC 60.068 52.381 0.00 0.00 0.00 3.85
251 252 0.966179 TCATGCACGACACAGTACCT 59.034 50.000 0.00 0.00 0.00 3.08
252 253 1.726791 CTTCATGCACGACACAGTACC 59.273 52.381 0.00 0.00 0.00 3.34
253 254 2.672714 TCTTCATGCACGACACAGTAC 58.327 47.619 0.00 0.00 0.00 2.73
254 255 3.378911 TTCTTCATGCACGACACAGTA 57.621 42.857 0.00 0.00 0.00 2.74
255 256 2.238942 TTCTTCATGCACGACACAGT 57.761 45.000 0.00 0.00 0.00 3.55
256 257 3.242220 GCTATTCTTCATGCACGACACAG 60.242 47.826 0.00 0.00 0.00 3.66
257 258 2.672874 GCTATTCTTCATGCACGACACA 59.327 45.455 0.00 0.00 0.00 3.72
258 259 2.030946 GGCTATTCTTCATGCACGACAC 59.969 50.000 0.00 0.00 0.00 3.67
259 260 2.279741 GGCTATTCTTCATGCACGACA 58.720 47.619 0.00 0.00 0.00 4.35
260 261 2.279741 TGGCTATTCTTCATGCACGAC 58.720 47.619 0.00 0.00 0.00 4.34
261 262 2.554142 CTGGCTATTCTTCATGCACGA 58.446 47.619 0.00 0.00 0.00 4.35
262 263 1.600957 CCTGGCTATTCTTCATGCACG 59.399 52.381 0.00 0.00 0.00 5.34
263 264 1.336125 GCCTGGCTATTCTTCATGCAC 59.664 52.381 12.43 0.00 0.00 4.57
264 265 1.213678 AGCCTGGCTATTCTTCATGCA 59.786 47.619 21.98 0.00 36.99 3.96
265 266 1.878734 GAGCCTGGCTATTCTTCATGC 59.121 52.381 23.44 0.49 39.88 4.06
266 267 3.139850 CAGAGCCTGGCTATTCTTCATG 58.860 50.000 23.44 0.08 39.88 3.07
267 268 3.044156 TCAGAGCCTGGCTATTCTTCAT 58.956 45.455 23.44 0.00 39.88 2.57
268 269 2.470990 TCAGAGCCTGGCTATTCTTCA 58.529 47.619 23.44 1.07 39.88 3.02
269 270 3.550437 TTCAGAGCCTGGCTATTCTTC 57.450 47.619 23.44 8.31 39.88 2.87
270 271 3.521126 TCTTTCAGAGCCTGGCTATTCTT 59.479 43.478 23.44 0.00 39.88 2.52
271 272 3.110705 TCTTTCAGAGCCTGGCTATTCT 58.889 45.455 23.44 12.38 39.88 2.40
272 273 3.550437 TCTTTCAGAGCCTGGCTATTC 57.450 47.619 23.44 9.95 39.88 1.75
273 274 3.201708 ACATCTTTCAGAGCCTGGCTATT 59.798 43.478 23.44 10.45 39.88 1.73
274 275 2.776536 ACATCTTTCAGAGCCTGGCTAT 59.223 45.455 23.44 17.11 39.88 2.97
275 276 2.191400 ACATCTTTCAGAGCCTGGCTA 58.809 47.619 23.44 2.71 39.88 3.93
276 277 0.990374 ACATCTTTCAGAGCCTGGCT 59.010 50.000 23.64 23.64 43.88 4.75
277 278 1.742268 GAACATCTTTCAGAGCCTGGC 59.258 52.381 11.65 11.65 31.51 4.85
278 279 3.269178 GAGAACATCTTTCAGAGCCTGG 58.731 50.000 2.86 0.00 31.51 4.45
279 280 3.935315 TGAGAACATCTTTCAGAGCCTG 58.065 45.455 0.00 0.00 0.00 4.85
280 281 4.515361 CATGAGAACATCTTTCAGAGCCT 58.485 43.478 0.00 0.00 34.15 4.58
281 282 3.626670 CCATGAGAACATCTTTCAGAGCC 59.373 47.826 0.00 0.00 34.15 4.70
282 283 4.511527 TCCATGAGAACATCTTTCAGAGC 58.488 43.478 0.00 0.00 34.15 4.09
283 284 5.732633 ACTCCATGAGAACATCTTTCAGAG 58.267 41.667 0.00 0.00 34.15 3.35
284 285 5.752036 ACTCCATGAGAACATCTTTCAGA 57.248 39.130 0.00 0.00 34.15 3.27
285 286 6.638610 AGTACTCCATGAGAACATCTTTCAG 58.361 40.000 0.00 0.00 34.15 3.02
286 287 6.611613 AGTACTCCATGAGAACATCTTTCA 57.388 37.500 0.00 0.00 34.15 2.69
307 308 9.892130 AAGAGACGAAATCATTAATTAAGGAGT 57.108 29.630 16.73 12.14 28.93 3.85
310 311 9.638300 CGAAAGAGACGAAATCATTAATTAAGG 57.362 33.333 3.46 3.46 0.00 2.69
312 313 9.967245 CACGAAAGAGACGAAATCATTAATTAA 57.033 29.630 0.00 0.00 34.70 1.40
313 314 9.361315 TCACGAAAGAGACGAAATCATTAATTA 57.639 29.630 0.00 0.00 34.70 1.40
314 315 8.251750 TCACGAAAGAGACGAAATCATTAATT 57.748 30.769 0.00 0.00 34.70 1.40
315 316 7.827819 TCACGAAAGAGACGAAATCATTAAT 57.172 32.000 0.00 0.00 34.70 1.40
316 317 7.330946 ACATCACGAAAGAGACGAAATCATTAA 59.669 33.333 0.00 0.00 32.35 1.40
317 318 6.811665 ACATCACGAAAGAGACGAAATCATTA 59.188 34.615 0.00 0.00 32.35 1.90
318 319 5.639506 ACATCACGAAAGAGACGAAATCATT 59.360 36.000 0.00 0.00 32.35 2.57
319 320 5.171476 ACATCACGAAAGAGACGAAATCAT 58.829 37.500 0.00 0.00 32.35 2.45
320 321 4.556233 ACATCACGAAAGAGACGAAATCA 58.444 39.130 0.00 0.00 32.35 2.57
321 322 5.517037 AACATCACGAAAGAGACGAAATC 57.483 39.130 0.00 0.00 32.35 2.17
322 323 6.089551 CACTAACATCACGAAAGAGACGAAAT 59.910 38.462 0.00 0.00 32.35 2.17
323 324 5.401376 CACTAACATCACGAAAGAGACGAAA 59.599 40.000 0.00 0.00 32.35 3.46
324 325 4.915667 CACTAACATCACGAAAGAGACGAA 59.084 41.667 0.00 0.00 32.35 3.85
325 326 4.023450 ACACTAACATCACGAAAGAGACGA 60.023 41.667 0.00 0.00 32.35 4.20
326 327 4.227538 ACACTAACATCACGAAAGAGACG 58.772 43.478 0.00 0.00 32.35 4.18
327 328 5.690409 TGAACACTAACATCACGAAAGAGAC 59.310 40.000 0.00 0.00 32.35 3.36
328 329 5.838529 TGAACACTAACATCACGAAAGAGA 58.161 37.500 0.00 0.00 34.56 3.10
329 330 5.388890 GCTGAACACTAACATCACGAAAGAG 60.389 44.000 0.00 0.00 0.00 2.85
330 331 4.447724 GCTGAACACTAACATCACGAAAGA 59.552 41.667 0.00 0.00 0.00 2.52
331 332 4.377431 GGCTGAACACTAACATCACGAAAG 60.377 45.833 0.00 0.00 0.00 2.62
332 333 3.496884 GGCTGAACACTAACATCACGAAA 59.503 43.478 0.00 0.00 0.00 3.46
333 334 3.064207 GGCTGAACACTAACATCACGAA 58.936 45.455 0.00 0.00 0.00 3.85
334 335 2.611971 GGGCTGAACACTAACATCACGA 60.612 50.000 0.00 0.00 0.00 4.35
335 336 1.732259 GGGCTGAACACTAACATCACG 59.268 52.381 0.00 0.00 0.00 4.35
336 337 2.778299 TGGGCTGAACACTAACATCAC 58.222 47.619 0.00 0.00 0.00 3.06
337 338 3.264193 AGATGGGCTGAACACTAACATCA 59.736 43.478 0.00 0.00 36.59 3.07
338 339 3.878778 AGATGGGCTGAACACTAACATC 58.121 45.455 0.00 0.00 34.89 3.06
339 340 4.384208 GGTAGATGGGCTGAACACTAACAT 60.384 45.833 0.00 0.00 0.00 2.71
340 341 3.055385 GGTAGATGGGCTGAACACTAACA 60.055 47.826 0.00 0.00 0.00 2.41
341 342 3.532542 GGTAGATGGGCTGAACACTAAC 58.467 50.000 0.00 0.00 0.00 2.34
342 343 2.504175 GGGTAGATGGGCTGAACACTAA 59.496 50.000 0.00 0.00 0.00 2.24
343 344 2.116238 GGGTAGATGGGCTGAACACTA 58.884 52.381 0.00 0.00 0.00 2.74
344 345 0.912486 GGGTAGATGGGCTGAACACT 59.088 55.000 0.00 0.00 0.00 3.55
345 346 0.618458 TGGGTAGATGGGCTGAACAC 59.382 55.000 0.00 0.00 0.00 3.32
346 347 1.212688 CATGGGTAGATGGGCTGAACA 59.787 52.381 0.00 0.00 0.00 3.18
386 388 0.267054 ATCCTGAGATGCCCTGGAGA 59.733 55.000 0.00 0.00 35.56 3.71
409 411 2.159014 TCGGAAGTATGGGATTTGGACG 60.159 50.000 0.00 0.00 0.00 4.79
854 856 3.560902 AGTGTATGTCTATGGATCGCG 57.439 47.619 0.00 0.00 0.00 5.87
865 867 1.475280 TGGCTCGGTGTAGTGTATGTC 59.525 52.381 0.00 0.00 0.00 3.06
968 985 2.329690 CTCGTCCTCGATCGCTGG 59.670 66.667 11.09 14.89 45.21 4.85
988 1005 4.223964 GAACATCGCCGCGCCTTC 62.224 66.667 8.21 4.64 0.00 3.46
989 1006 4.760047 AGAACATCGCCGCGCCTT 62.760 61.111 8.21 0.00 0.00 4.35
1596 1635 4.940046 GTGGTGAATGATGATTGTCTCTGT 59.060 41.667 0.00 0.00 0.00 3.41
1604 1643 2.754552 CCCGTTGTGGTGAATGATGATT 59.245 45.455 0.00 0.00 35.15 2.57
1648 1687 3.814625 TCTGCTGTGTAAATCACCACAA 58.185 40.909 0.00 0.00 45.61 3.33
1672 1711 4.950434 ACGTTCTTCTGTCTCTAGTAGC 57.050 45.455 0.00 0.00 0.00 3.58
1705 1771 3.137446 AGATTGATCACTGGCCTATGC 57.863 47.619 3.32 0.00 0.00 3.14
1808 1883 1.525995 AAACGCGCAGGGATATGGG 60.526 57.895 5.73 0.00 46.37 4.00
1814 1892 4.697756 CCTCCAAACGCGCAGGGA 62.698 66.667 5.73 9.74 46.37 4.20
2103 2187 0.981183 ATGGGGTGCTACTTCGTCAA 59.019 50.000 0.00 0.00 0.00 3.18
2121 2205 2.809601 GACGCGCGAGGTCAACAT 60.810 61.111 39.36 10.81 34.56 2.71
2206 2290 7.095481 GGGATGAATATGCTGTGTATATATGCG 60.095 40.741 0.00 0.00 0.00 4.73
2207 2291 7.173907 GGGGATGAATATGCTGTGTATATATGC 59.826 40.741 0.00 0.00 0.00 3.14
2210 2294 6.183360 CGGGGGATGAATATGCTGTGTATATA 60.183 42.308 0.00 0.00 0.00 0.86
2211 2295 5.396772 CGGGGGATGAATATGCTGTGTATAT 60.397 44.000 0.00 0.00 0.00 0.86
2212 2296 4.081142 CGGGGGATGAATATGCTGTGTATA 60.081 45.833 0.00 0.00 0.00 1.47
2213 2297 3.307691 CGGGGGATGAATATGCTGTGTAT 60.308 47.826 0.00 0.00 0.00 2.29
2214 2298 2.038426 CGGGGGATGAATATGCTGTGTA 59.962 50.000 0.00 0.00 0.00 2.90
2251 2335 4.907034 CGATCCAGGCGACGACGG 62.907 72.222 9.67 1.50 40.15 4.79
2278 2362 2.433318 GAGCTTCCTTCAGCGCGT 60.433 61.111 8.43 0.00 45.24 6.01
2284 2368 2.235650 CTCTCATGGTGAGCTTCCTTCA 59.764 50.000 9.68 0.00 43.95 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.