>input_sequence_83561
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--------------------------------------------------------ATGTTCTTCTTCTTCGTGGGCGGC
GTGGAGCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGA
GACCGAGAAGGTGCTCAAGCTCTTCTTCGTGCCGGCGTGGCGGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACT
GCGG-CCTCCTCGCGCCGGGGTCCCTCGGCGGCGGGGAGCCGGGCCCGGGACCGCTCCTCCCCCGCGCGGGGGCGGCGCA
GTGCGGCGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGA----------
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>chr1B_1_TraesCS1B01G281700
GAGAAAGCTCCGTCGACGTTTATCTTTGAGTAACCCGGTTGCGGCGCCAGCCATCTCTTGCTTGCATCAGGTTTAGGCTT
CAACATCAACTTGTGGCTCATGGCGTTATCTAGCTGGTTCAGCTCAGCTATATAGGAATTGACAAAACCATGGATATGTT
CCAGGCTTTAAAAGATGTTCTCATGGATGGTCTTCCGACGAGCAGACCAAATTGCCCATAGTGTGATGATCATCCTGGTG
AACTCAAAATGAGGTACTGTGTCGTGCATGAAGAATAGCCAGGCTCTGAAAGATGTTCTCATGGAGTACTCCTTAATTAA
TGATTTCGTCTCTTTCGTGATGTTAGTGTTCAGCCCATCTACCCATGGGCTGAGAACCGGCC-TCCCTCTCCAGGGCATC
TCAGGATTCCCGTCCAAATCCCATACTTCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCCAGAAGCGCAAGGACGCGATCCATAGACATACACTACAC
CGAGCCATCAAACCAACACTTCATCAGATCGAT---------------CGGAGCCGAGAACCGAGGCAACGAGGGATCGT
GCGAGAAAAATTCAGAGGGAATCGCCAGCGATCGAGGACGAGCGGAAGGCGCGGCGATGTTCTTCTTCTTCGTGGGCGGC
GTGGAGCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGA
GACCGAGAAGGTGCTCAAGCTCTTCTTCGTGCCGGCGTGGCGGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACT
GCGG-CCTCCTCGCGCCGGGGTCCCTCGGCGGCGGGGAGCCGGGCCCGGGACCGCTCCTCCCCCGCGCGGGGGCGGCGCA
GTGCGGCGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGCGCGCC--
-ATGGATGCGCGTTGCAGGCCACGGCCCAGAGAGGGACAGA--------GGTGATGATC------CTCTCTCTCTGAACT
CTGAAGACAGTAGTACGTACTAGGTTTGTGCAGCAGAGTTATCAGTTAGCTTTT---GGTTCTGCGAAAGTTGTGCCGCC
GTGCGTGGATGTAAATGTGGTGAAACGTTTGTAATAAACGAAATCGATAAAATTCGTCGCATCATCGGCAGCGCACACTA
CACAAAATCTCAAAGTTCAG-TTTGCACTTTCAAACAGAGACAATCATCATTCACCACAACGGGAACAGCCTACGAGCTG
TGACCCTTGTGGTGATTTACACAGCAGAATGCTACTAGAGACAGAAGAACGTAGCGCGCCTGC-----------------
----------GCATAGGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCAGCGGGGTGGAA
---------GTGCCCGTACCCCTGAGCAGGAGGAGGGTACTGC---CCATATCCCTGCGCGTTTGGAGGGGGAGGGTACT
GCCCGTATCCCTGCGCGTTCGGAGGCGGAGGGTAGTGAGCGTACGGCGCCTGACCGTACATCGGAGCAGGGTGGCCCATC
GCGATGCCGTCGGGCTTGGGCTCGCCCGCCGCTGACGGCCCCGCCACGGCCCCCGGGTATCCTGGTGCAGCAGCCGCC--
----GCCGTGGCCGTGGCTGCAGCGGCGCGAAGCAGGAAGTAGGATTTGATCCCGAGCACGGTGGCGATGATGCTCAGGA
TGGCCGCCCTCCTGAACACGCCGTCCTTGACGAAGTAGCACCCCATGTTGACCTCGCGCGTCACGGGCGCGTTCCACGCC
GCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACCCTGCACGCGCATATATACACAGCATATTCATCCCCCGT
TGAATTGGTCATCGCCGTCGTCGCCTGGATCGAATCGGAGCACGCGCTGAAGGAAGCTCACCATGAGAGGGCGGCGAAGA
CGACGCCGATGTTCCG
>chr1A_348
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---------------------------GTTCAGCCCATCTACCCATGGGCTGAGAACCGGCCCTCCCCCTCCAGGGCATC
TCAGGATTCCGGCCCAAGTCCGACGTTCCGAGCTCTCCAGAATTCTCTTCCCGTTTCCCCCT------------------
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------------------------------------TCCTCCAGAAGCACAAGGAAGCGATCCAC------ACACTACAC
CGAGCCATCAAACCAACACTTCATCAGATCGAACCGAGCCAGATCGACCGGAGCCGAGAACCGAGGCAACGAGGGATCGC
GCGAGAAAAATTCAGAGGAAATCGGCAGCGATCGAG----------AGGCGCGGCGATGTTCTTCTTCTTCGTAGGCGGC
GTGGAGCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGA
GACCGAGAAGGTGCTCAAGCTCTTCTTCGTCCCCGCGTGGCGGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACT
GCGG-CCTCCTCGCGCCGGGGTCCCACGGCGCCGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCA
ATGCGGCGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGGCGCCATG
GATGGATGCGCGTTGCAGGCCACGGCCCAGAGAGGAGCAGA--------GGTGATGATCCTCTCTCTCTCTCTCTGAACT
CTCAAGACAGTAGTA-GTACTAGGGTTGTGCAGCAGAGTTGTCAGTTAGCTTCT---GGTTCTGCGGAAGTTGTGCTAAC
CTGTGTGGATGTAAATTTGGTGAAATGTTTGTAATAAACGAGACCGATAAAATTCGTCGCATCATCGGCAGCGCACACTA
CACAAAATCTCAAAACTCAG-TTTGCACTTTCAAGCAGAGACGATCATCATTCACCACAACGGGAACAGCCTACGAGCTG
TGACCCGTGTGGTGATTTACACAGCTGAATTATGGA--AGACGGAAGAACATGGCATAGATGAAGAACCAAGACATGCTT
GCACATAACTACATAAGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCATCGGGGTGGAA
---------CTGTCCGTACCCCTGAGCAGGAGGAGGGTACTGTCCTCCATACCCCTGCGCGTTTGGAGGGGGAGGGTACT
GCCCGTATCCCTGCGCGTTCGGAGGCGGAGGGTAGTGCGCGTACGGCGCCTGCCCGTACATCGGAGCAGGGTGGCCCATC
GCGATGCCGTCGGGCTTGGGCTCGCCCGCCGACGACGGCCCCGCCACGGCCCCCGGGTATCCCGGCGCAGCAGCCGCTGC
CGTTGCCGTGGCCGTGGCCGCGGCGGCGCGAAGCAGGAAGTAGGACTTGATCCCGAGCACGGTGGCGATGATGCTCAGGA
TGGCCGCCCTCCTGAACACGCCGTCCCTGACGAAGTAGCACCCCGTGTTGACCTCGCGCGTCACCGGCGCGTTCCACGCC
GCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACCCTGCACG--CAC----ATACAGCATATTCATCCCCCGT
TGAATTGT---------TCGTCGCCTGGATCGAATCGGGGCGCGCGCGGAAGGAGGCTCACCATGAGAGGACGGCGAAGA
CGACGCCGATGTTGCG
>chr1A_836
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------------------------------------TCCTCCAAAAGTGCAAGGAAGCGATCCAC------ACACTACAC
CGAGCCATCAAACTAACACTTCATCAGATCGAT---------------CGGAGCTGAGAACCGAGGCAAGGAGGGGTCGT
GCGAGAAAAATTCAGAAGAAATCGGCAGCGATCGAGGACGAGCGAGAGGCGCAACGATG---TTCTTCTTCGTGGGCGGC
GTGGAGCAGGGCGCAGGACGGGTCCTCAAGGAGGCGGCCGGGCGGTGCCTGCGCTGTGGCGGCGTGACCGATCTGGTGGA
GACCGAGAAGGTGCTCAAGCTCTTCTTCGTGTCGGCGTGGCCGTGGCCGGGCAAGGACCCCGCCTACCTCTGCCGCGACT
GC-G-CCTCCTCGCGCCGGGGTCCCACGGCGCCGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCA
ATGCGGCGCGTGCAGCCGCGCCGTCGACCCGCAGTTCCGCTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGGCGCCATG
GATGGATGCGCGTTGCAGGCCACGGCCCAGAGAGGAGCAGA--------GGTGATGATCCT--CTCTCTCTCTCTGAACT
CTCAAGACAGTAGTA-----------------------------------------------------------------
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>chr1D_836
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------------------------------------TCCTCTACAAGCACAACGAAGCGATCCATACACATACACTACAC
CGAGCCATCAAACCAACACTTTATCAGATCGAA---------------CGGAACCGAGAACCGAGGCAGCAAGGGATCGC
GCGAGAAGAATTCAGAGGAAATCGGCAGCGATCGAG----------AGGCGCGGCGATGTTCTTCTTCTTCGTGGGCGGC
GTGGAGCAGGGCGCGGGGCGGGTGCTCAAGGAGGCGGCCGGGCGGTGCGTGCGCTGCGGCGGCGCGGCCGACCTGGTGGA
GACCGAGAAGGTGCTCAAGCTCTTCTTCGTCCCGGCGTGGCGGTGGCCCGGCAAGGACCCCGCCTACCTCTGCCGCGACT
GC-GGCCTCCTTGCGCCGTGCTCCCT------CGGCGGCGGGGA---------GCTCCTCCCCCGCGCGGGGGCGGGGCA
GTGCGGCGCGTGCAGCCGCGCCGTCGAGCCGCAGTTCCGGTTCTGCCCCTTCTGCGGCTCCGCGCTGTGAAGT-------
GATGGATGCGCGTTGCAGGCGACCGCCCAGAGAGGAACAGAGTTACAGAGGTGATGGTG------CTCTCTCTCTCAACT
CTGAAGACAGTAGTAC-TACTAGGTTTGTGCAGCAGAGTTATCAGTAAGCTTTTTTTGGTTTTGCCAAAATTGTGCTGCC
GTGCGTCCATGTAAATGTGGTGAAATGTTTGTAATAAACGAAATCGATAAAATTCGTCGCATCATCGGCGAATCACACCA
CACAAAATCTCAAAGCTCAAATTTGCACTTCCAAGCAGAGACGATCATCATTCACCACAACGGGAACAGCCTACGAGCCG
TGACCCGTGTGGTGATTTACGCAGCAGAATTCTACTAGAGACAGAAGAACATAGCACGCCTGC-----------------
----------ACATAGGCCAGTGATCAATCTACACGGCTTGCCCGTATCCTTGACCCTGAGGGGGAGCAGCGGGCTGGAA
TCAGTGTCCGTGCCCGTACCCCTGAGCAGGAGGAGGGTACTGTCC---ATACCCCTGCGCGTTTGGAGGGGGCGGGTACT
GCCCGTACCCCTGCGCGTTCGGAGGCGGAGGGTAGTGCGCGTACGGCGCCTGCCCGTACATCGGAGCAGGGTGACCCATC
GCGATCCCGTCGGGCTTGGGCTCGCCCGCCGACGACGGCCCCGCCACGGCCCCCGGGTATCCTGGCACAGCAGCAGCCGC
CGCCGCC---GCCGTGGCCGCAGCGGCGCGAAGCAAGAAGTAGGACTTGATCCCGAGCACGGTTGCGATGATGCTCAGGA
TGGCCGCCCTCCTGAACACGCCGTCCCTGACGAAGTAGCACCCCGTGTTGACCTCGCGCGTCACCGGCGCGTTCCACGCC
GCGCCCTGCACGAAGTAGATCTCCGCGATCACCGTCGCCACCCTGCACGGACAC----ACACAGCATATTCATCGG----
-----------TCGTCGTCGTCGCCTGGATCGAATCGGAAGGAAGCTG------AGCTCACCATGAGAGGACGGCGAAGA
CGACGCCGATGTTCCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S------------
----------S-S----S---S-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----------S-------------
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------------------S-----S-------------------SS----------------------------------
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-------------------------------S---S-SSSS--SSSSSSSSSS-----------------------S---
------------------------------------------------------------------------SSSS-S--
-----------------------------------S--------------------------------------------
----------------------------------------------------------------------------S---
-------------------------S------------------------------------------------------
---------------S------------------S-------S-------------------------------------
------S-----------------------S-------------------S----S------------------------
----------S---------------------------------------------------------------------
------------------------------------------S--------S----------------------------
-------------------------------------S--------------S---------------------------
-------------------------------SS--------------------------------S--------------
------------------S--------------------------S----------------------------------
--------------------------S-----------------S-------------------S---------------
-------------------------------------------------SS--SSSSS----------------------
-------SSSS---S--------------------------S-----S----------------------S---------
----------------
>forward_21
-AGAAAGCTCCGTCGACGTTT-----------------------------------------------------------
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>reverse_1883
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------------------------------------------CCCATATCCCTGCGCGTTT-------------------
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