Multiple sequence alignment - TraesCS1B01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G280500 chr1B 100.000 3388 0 0 1001 4388 488817764 488821151 0.000000e+00 6257
1 TraesCS1B01G280500 chr1B 100.000 678 0 0 1 678 488816764 488817441 0.000000e+00 1253
2 TraesCS1B01G280500 chr1A 95.931 2089 66 9 2309 4388 464248545 464250623 0.000000e+00 3369
3 TraesCS1B01G280500 chr1A 93.581 1075 59 7 1001 2071 464247478 464248546 0.000000e+00 1594
4 TraesCS1B01G280500 chr1A 82.635 334 35 10 29 352 464238235 464238555 1.550000e-69 274
5 TraesCS1B01G280500 chr1A 87.333 150 8 5 539 678 464247302 464247450 1.260000e-35 161
6 TraesCS1B01G280500 chr1D 95.203 1084 36 3 2309 3379 365435081 365436161 0.000000e+00 1700
7 TraesCS1B01G280500 chr1D 93.936 973 55 4 3418 4388 365436158 365437128 0.000000e+00 1467
8 TraesCS1B01G280500 chr1D 87.732 1076 68 21 1001 2057 365434032 365435062 0.000000e+00 1197
9 TraesCS1B01G280500 chr1D 86.973 261 22 5 121 380 365430512 365430761 2.580000e-72 283
10 TraesCS1B01G280500 chr1D 86.735 196 13 6 455 637 365433468 365433663 5.750000e-49 206
11 TraesCS1B01G280500 chr1D 88.136 118 4 4 29 139 365429817 365429931 9.900000e-27 132
12 TraesCS1B01G280500 chr6B 96.721 244 8 0 2067 2310 523343634 523343877 1.470000e-109 407
13 TraesCS1B01G280500 chr6B 95.436 241 11 0 2070 2310 98854533 98854293 6.880000e-103 385
14 TraesCS1B01G280500 chr2A 96.281 242 8 1 2070 2310 362446136 362445895 3.180000e-106 396
15 TraesCS1B01G280500 chr7D 95.868 242 10 0 2069 2310 31062083 31061842 4.110000e-105 392
16 TraesCS1B01G280500 chr7D 93.976 249 15 0 2062 2310 34602927 34602679 1.150000e-100 377
17 TraesCS1B01G280500 chr7A 95.436 241 11 0 2070 2310 631367419 631367659 6.880000e-103 385
18 TraesCS1B01G280500 chr3B 95.455 242 8 1 2069 2310 423813514 423813276 2.480000e-102 383
19 TraesCS1B01G280500 chr2B 95.082 244 11 1 2067 2310 399350440 399350682 2.480000e-102 383
20 TraesCS1B01G280500 chr2B 94.694 245 13 0 2066 2310 101976710 101976954 8.910000e-102 381
21 TraesCS1B01G280500 chr2D 81.548 168 20 9 1025 1183 242325925 242326090 1.280000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G280500 chr1B 488816764 488821151 4387 False 3755.000000 6257 100.000000 1 4388 2 chr1B.!!$F1 4387
1 TraesCS1B01G280500 chr1A 464247302 464250623 3321 False 1708.000000 3369 92.281667 539 4388 3 chr1A.!!$F2 3849
2 TraesCS1B01G280500 chr1D 365429817 365437128 7311 False 830.833333 1700 89.785833 29 4388 6 chr1D.!!$F1 4359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 3701 0.107214 CCACCGGCACCTGTTATGAT 60.107 55.000 0.00 0.0 0.0 2.45 F
1260 4561 0.249398 TCTGCCCGTAGAAAAGGAGC 59.751 55.000 0.00 0.0 0.0 4.70 F
2101 5433 1.203523 TCCAAAATATTGTGCACCCGC 59.796 47.619 15.69 0.0 34.6 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 5434 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.0 0.0 0.0 0.00 3.86 R
2105 5437 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.0 0.0 0.0 0.00 5.14 R
3941 7297 0.033504 AGCACAGGTGACGGTTACAG 59.966 55.0 3.1 0.0 36.26 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.874392 GTAACACTAAGGGCGAGGTAA 57.126 47.619 0.00 0.00 0.00 2.85
21 22 2.756840 AACACTAAGGGCGAGGTAAC 57.243 50.000 0.00 0.00 0.00 2.50
22 23 1.636148 ACACTAAGGGCGAGGTAACA 58.364 50.000 0.00 0.00 41.41 2.41
23 24 2.185387 ACACTAAGGGCGAGGTAACAT 58.815 47.619 0.00 0.00 41.41 2.71
24 25 2.167900 ACACTAAGGGCGAGGTAACATC 59.832 50.000 0.00 0.00 41.41 3.06
25 26 2.167693 CACTAAGGGCGAGGTAACATCA 59.832 50.000 0.00 0.00 41.41 3.07
26 27 2.835764 ACTAAGGGCGAGGTAACATCAA 59.164 45.455 0.00 0.00 41.41 2.57
27 28 2.403252 AAGGGCGAGGTAACATCAAG 57.597 50.000 0.00 0.00 41.41 3.02
73 74 9.084164 GTAAGGGCATGTGATACTTAATATACG 57.916 37.037 0.00 0.00 0.00 3.06
92 93 2.108700 CGACCTTCGCAACAACAAAAG 58.891 47.619 0.00 0.00 31.14 2.27
93 94 2.223157 CGACCTTCGCAACAACAAAAGA 60.223 45.455 0.00 0.00 31.14 2.52
94 95 3.729462 CGACCTTCGCAACAACAAAAGAA 60.729 43.478 0.00 0.00 31.14 2.52
95 96 3.507786 ACCTTCGCAACAACAAAAGAAC 58.492 40.909 0.00 0.00 0.00 3.01
96 97 2.857748 CCTTCGCAACAACAAAAGAACC 59.142 45.455 0.00 0.00 0.00 3.62
97 98 3.428862 CCTTCGCAACAACAAAAGAACCT 60.429 43.478 0.00 0.00 0.00 3.50
98 99 3.859411 TCGCAACAACAAAAGAACCTT 57.141 38.095 0.00 0.00 0.00 3.50
99 100 4.181309 TCGCAACAACAAAAGAACCTTT 57.819 36.364 0.00 0.00 0.00 3.11
100 101 4.170256 TCGCAACAACAAAAGAACCTTTC 58.830 39.130 0.00 0.00 0.00 2.62
102 103 4.170256 GCAACAACAAAAGAACCTTTCGA 58.830 39.130 0.00 0.00 34.02 3.71
103 104 4.623595 GCAACAACAAAAGAACCTTTCGAA 59.376 37.500 0.00 0.00 34.02 3.71
104 105 5.119434 GCAACAACAAAAGAACCTTTCGAAA 59.881 36.000 10.71 10.71 34.02 3.46
105 106 6.346999 GCAACAACAAAAGAACCTTTCGAAAA 60.347 34.615 12.41 0.00 34.02 2.29
106 107 6.699895 ACAACAAAAGAACCTTTCGAAAAC 57.300 33.333 12.41 4.30 34.02 2.43
107 108 5.636121 ACAACAAAAGAACCTTTCGAAAACC 59.364 36.000 12.41 1.68 34.02 3.27
108 109 4.751060 ACAAAAGAACCTTTCGAAAACCC 58.249 39.130 12.41 2.02 34.02 4.11
109 110 4.116961 CAAAAGAACCTTTCGAAAACCCC 58.883 43.478 12.41 2.37 34.02 4.95
110 111 3.308035 AAGAACCTTTCGAAAACCCCT 57.692 42.857 12.41 4.60 34.02 4.79
149 154 6.546972 GCTCTTATAGCCTTACAAATGACC 57.453 41.667 0.00 0.00 46.25 4.02
150 155 5.470437 GCTCTTATAGCCTTACAAATGACCC 59.530 44.000 0.00 0.00 46.25 4.46
151 156 6.569127 TCTTATAGCCTTACAAATGACCCA 57.431 37.500 0.00 0.00 0.00 4.51
160 764 5.221621 CCTTACAAATGACCCACCATTGTTT 60.222 40.000 0.00 0.00 36.90 2.83
172 776 4.081697 CCACCATTGTTTTGGGAATAGGTC 60.082 45.833 0.00 0.00 41.35 3.85
264 869 2.145397 ACAAGTCAGCGGAGAGGATA 57.855 50.000 0.00 0.00 0.00 2.59
278 883 5.245075 CGGAGAGGATAAGCTAGAAGGAAAT 59.755 44.000 0.00 0.00 0.00 2.17
290 895 7.227156 AGCTAGAAGGAAATGTCAAGAGAAAA 58.773 34.615 0.00 0.00 0.00 2.29
323 928 7.604657 AAGTACATTAAGTAGAGGGATGAGG 57.395 40.000 0.00 0.00 32.19 3.86
341 946 3.478540 GGAGCTAGTCCGCCATTTT 57.521 52.632 0.00 0.00 34.84 1.82
350 955 5.066764 GCTAGTCCGCCATTTTACCATTAAA 59.933 40.000 0.00 0.00 0.00 1.52
361 966 5.731957 TTTACCATTAAAAACCTGCCTCC 57.268 39.130 0.00 0.00 0.00 4.30
373 978 1.281867 CCTGCCTCCCTGACATGTTTA 59.718 52.381 0.00 0.00 0.00 2.01
375 980 3.420893 CTGCCTCCCTGACATGTTTAAA 58.579 45.455 0.00 0.00 0.00 1.52
380 985 6.152661 TGCCTCCCTGACATGTTTAAATTTAG 59.847 38.462 0.00 0.00 0.00 1.85
381 986 6.405842 GCCTCCCTGACATGTTTAAATTTAGG 60.406 42.308 0.00 1.74 0.00 2.69
382 987 6.889722 CCTCCCTGACATGTTTAAATTTAGGA 59.110 38.462 0.00 0.00 0.00 2.94
383 988 7.067494 CCTCCCTGACATGTTTAAATTTAGGAG 59.933 40.741 0.00 12.51 35.50 3.69
413 3687 6.708054 AGCTAAGAGATCATAAATTTCCACCG 59.292 38.462 0.00 0.00 0.00 4.94
414 3688 6.073003 GCTAAGAGATCATAAATTTCCACCGG 60.073 42.308 0.00 0.00 0.00 5.28
415 3689 4.137543 AGAGATCATAAATTTCCACCGGC 58.862 43.478 0.00 0.00 0.00 6.13
416 3690 3.882888 GAGATCATAAATTTCCACCGGCA 59.117 43.478 0.00 0.00 0.00 5.69
425 3699 0.322098 TTCCACCGGCACCTGTTATG 60.322 55.000 0.00 0.00 0.00 1.90
426 3700 1.195442 TCCACCGGCACCTGTTATGA 61.195 55.000 0.00 0.00 0.00 2.15
427 3701 0.107214 CCACCGGCACCTGTTATGAT 60.107 55.000 0.00 0.00 0.00 2.45
428 3702 1.299541 CACCGGCACCTGTTATGATC 58.700 55.000 0.00 0.00 0.00 2.92
429 3703 0.908910 ACCGGCACCTGTTATGATCA 59.091 50.000 0.00 0.00 0.00 2.92
430 3704 1.490490 ACCGGCACCTGTTATGATCAT 59.510 47.619 13.81 13.81 0.00 2.45
431 3705 2.092429 ACCGGCACCTGTTATGATCATT 60.092 45.455 14.65 0.00 0.00 2.57
432 3706 2.951642 CCGGCACCTGTTATGATCATTT 59.048 45.455 14.65 0.00 0.00 2.32
433 3707 3.243168 CCGGCACCTGTTATGATCATTTG 60.243 47.826 14.65 3.55 0.00 2.32
434 3708 3.243168 CGGCACCTGTTATGATCATTTGG 60.243 47.826 14.65 12.80 0.00 3.28
435 3709 3.068590 GGCACCTGTTATGATCATTTGGG 59.931 47.826 14.65 13.07 0.00 4.12
436 3710 3.491447 GCACCTGTTATGATCATTTGGGC 60.491 47.826 14.65 7.24 0.00 5.36
437 3711 3.068590 CACCTGTTATGATCATTTGGGCC 59.931 47.826 14.65 0.00 0.00 5.80
438 3712 3.298619 CCTGTTATGATCATTTGGGCCA 58.701 45.455 14.65 0.00 0.00 5.36
439 3713 3.705579 CCTGTTATGATCATTTGGGCCAA 59.294 43.478 16.66 16.66 0.00 4.52
440 3714 4.441913 CCTGTTATGATCATTTGGGCCAAC 60.442 45.833 20.79 10.53 0.00 3.77
441 3715 4.092279 TGTTATGATCATTTGGGCCAACA 58.908 39.130 20.79 13.87 0.00 3.33
442 3716 4.081752 TGTTATGATCATTTGGGCCAACAC 60.082 41.667 20.79 9.18 0.00 3.32
443 3717 2.307496 TGATCATTTGGGCCAACACT 57.693 45.000 20.79 3.68 0.00 3.55
444 3718 3.448093 TGATCATTTGGGCCAACACTA 57.552 42.857 20.79 4.30 0.00 2.74
445 3719 3.772387 TGATCATTTGGGCCAACACTAA 58.228 40.909 20.79 3.84 0.00 2.24
446 3720 4.155709 TGATCATTTGGGCCAACACTAAA 58.844 39.130 20.79 2.96 0.00 1.85
447 3721 4.776837 TGATCATTTGGGCCAACACTAAAT 59.223 37.500 20.79 5.67 0.00 1.40
448 3722 5.248020 TGATCATTTGGGCCAACACTAAATT 59.752 36.000 20.79 0.00 0.00 1.82
449 3723 5.559148 TCATTTGGGCCAACACTAAATTT 57.441 34.783 20.79 0.00 0.00 1.82
450 3724 5.934781 TCATTTGGGCCAACACTAAATTTT 58.065 33.333 20.79 0.00 0.00 1.82
451 3725 6.360618 TCATTTGGGCCAACACTAAATTTTT 58.639 32.000 20.79 0.00 0.00 1.94
624 3910 4.021925 AACCCAGCACGGCCTCTC 62.022 66.667 0.00 0.00 0.00 3.20
658 3954 3.074369 TGCCGTAGCAGCCTAGCA 61.074 61.111 0.00 0.00 46.52 3.49
663 3959 1.373059 GTAGCAGCCTAGCATCCCC 59.627 63.158 0.00 0.00 36.85 4.81
1052 4351 3.305773 GCGTCGCGAGATCACGTC 61.306 66.667 10.24 2.47 45.19 4.34
1068 4367 2.607750 TCCCTGCTGTCTCCACCC 60.608 66.667 0.00 0.00 0.00 4.61
1081 4380 4.003788 CACCCCGTCCGCAGTCTT 62.004 66.667 0.00 0.00 0.00 3.01
1135 4435 7.390440 TGGTTTCATCCAGTGATTAGTGTTAAG 59.610 37.037 0.00 0.00 36.54 1.85
1144 4444 0.688487 TTAGTGTTAAGCCCCGCTGT 59.312 50.000 0.00 0.00 39.62 4.40
1231 4532 1.625818 GGAGACCTGTCCATGTCTTGT 59.374 52.381 6.67 0.00 41.74 3.16
1252 4553 2.598565 AGCTATGATTCTGCCCGTAGA 58.401 47.619 0.00 0.00 0.00 2.59
1258 4559 2.569853 TGATTCTGCCCGTAGAAAAGGA 59.430 45.455 0.00 0.00 39.87 3.36
1260 4561 0.249398 TCTGCCCGTAGAAAAGGAGC 59.751 55.000 0.00 0.00 0.00 4.70
1264 4565 1.492764 CCCGTAGAAAAGGAGCCCTA 58.507 55.000 0.00 0.00 31.13 3.53
1356 4659 8.248253 CAGTACCTTTTGTTTCTTTAGGTTGTT 58.752 33.333 0.00 0.00 39.76 2.83
1412 4717 2.459060 TCCTCGTATCCGTGCAAAAA 57.541 45.000 0.00 0.00 35.01 1.94
1415 4720 4.699637 TCCTCGTATCCGTGCAAAAATAT 58.300 39.130 0.00 0.00 35.01 1.28
1427 4732 7.026562 CCGTGCAAAAATATGTCACTTCATAA 58.973 34.615 0.00 0.00 34.58 1.90
1457 4763 9.647797 TCGTAGCTTCAACTTAATGAGAATTAA 57.352 29.630 0.00 0.00 0.00 1.40
1495 4801 1.958579 TGCTTCCCATATCAATGCAGC 59.041 47.619 0.00 0.00 33.19 5.25
1542 4848 9.209175 GTTTGTTGTAGACTTGTAGATCATCTT 57.791 33.333 0.00 0.00 0.00 2.40
1548 4854 9.996554 TGTAGACTTGTAGATCATCTTTTTGAA 57.003 29.630 0.00 0.00 0.00 2.69
1581 4887 8.293157 TGATAGCGTCATGTTTATGTTTCAAAA 58.707 29.630 0.00 0.00 35.73 2.44
1582 4888 6.991485 AGCGTCATGTTTATGTTTCAAAAG 57.009 33.333 0.00 0.00 35.73 2.27
1584 4890 5.388371 GCGTCATGTTTATGTTTCAAAAGCC 60.388 40.000 0.00 0.00 35.73 4.35
1585 4891 5.920273 CGTCATGTTTATGTTTCAAAAGCCT 59.080 36.000 0.00 0.00 35.73 4.58
1586 4892 7.081349 CGTCATGTTTATGTTTCAAAAGCCTA 58.919 34.615 0.00 0.00 35.73 3.93
1611 4917 4.394300 CCGTCTGCTCAAAGAATGAAGAAT 59.606 41.667 0.00 0.00 37.67 2.40
1632 4938 5.968528 ATTCGGTTTGCATTTACCTGTTA 57.031 34.783 10.36 0.00 32.08 2.41
1708 5026 7.377766 TGCAATAATACTGAAGTCTTTGGTC 57.622 36.000 0.00 0.00 0.00 4.02
1751 5070 3.573538 TCCTGATTGTTTGTGTTCATGGG 59.426 43.478 0.00 0.00 0.00 4.00
1882 5214 8.599055 CATACATGCAGATTAGATGTGTTAGT 57.401 34.615 0.00 0.00 32.59 2.24
1883 5215 9.049523 CATACATGCAGATTAGATGTGTTAGTT 57.950 33.333 0.00 0.00 32.59 2.24
1884 5216 7.545362 ACATGCAGATTAGATGTGTTAGTTC 57.455 36.000 0.00 0.00 0.00 3.01
1885 5217 6.540189 ACATGCAGATTAGATGTGTTAGTTCC 59.460 38.462 0.00 0.00 0.00 3.62
1886 5218 6.299805 TGCAGATTAGATGTGTTAGTTCCT 57.700 37.500 0.00 0.00 0.00 3.36
1887 5219 6.711277 TGCAGATTAGATGTGTTAGTTCCTT 58.289 36.000 0.00 0.00 0.00 3.36
1888 5220 7.168219 TGCAGATTAGATGTGTTAGTTCCTTT 58.832 34.615 0.00 0.00 0.00 3.11
1889 5221 7.665559 TGCAGATTAGATGTGTTAGTTCCTTTT 59.334 33.333 0.00 0.00 0.00 2.27
1890 5222 8.515414 GCAGATTAGATGTGTTAGTTCCTTTTT 58.485 33.333 0.00 0.00 0.00 1.94
1939 5271 9.618890 TTGTGCTAGATTTGCTCTTAGAAATAT 57.381 29.630 0.00 0.00 35.28 1.28
1940 5272 9.049523 TGTGCTAGATTTGCTCTTAGAAATATG 57.950 33.333 0.00 0.00 35.28 1.78
1977 5309 7.547722 ACATGGTTCTTTTTGGTTTTCTGTTAC 59.452 33.333 0.00 0.00 0.00 2.50
2070 5402 8.088365 GTGTAGCATGATACCTGTTATGTGATA 58.912 37.037 17.99 0.00 0.00 2.15
2071 5403 8.088365 TGTAGCATGATACCTGTTATGTGATAC 58.912 37.037 17.99 0.00 31.26 2.24
2072 5404 7.308450 AGCATGATACCTGTTATGTGATACT 57.692 36.000 0.00 0.00 0.00 2.12
2073 5405 7.382110 AGCATGATACCTGTTATGTGATACTC 58.618 38.462 0.00 0.00 0.00 2.59
2074 5406 6.591834 GCATGATACCTGTTATGTGATACTCC 59.408 42.308 0.00 0.00 0.00 3.85
2075 5407 6.665992 TGATACCTGTTATGTGATACTCCC 57.334 41.667 0.00 0.00 0.00 4.30
2076 5408 6.382087 TGATACCTGTTATGTGATACTCCCT 58.618 40.000 0.00 0.00 0.00 4.20
2077 5409 6.493802 TGATACCTGTTATGTGATACTCCCTC 59.506 42.308 0.00 0.00 0.00 4.30
2078 5410 3.967987 ACCTGTTATGTGATACTCCCTCC 59.032 47.826 0.00 0.00 0.00 4.30
2079 5411 3.967326 CCTGTTATGTGATACTCCCTCCA 59.033 47.826 0.00 0.00 0.00 3.86
2080 5412 4.594920 CCTGTTATGTGATACTCCCTCCAT 59.405 45.833 0.00 0.00 0.00 3.41
2081 5413 5.072329 CCTGTTATGTGATACTCCCTCCATT 59.928 44.000 0.00 0.00 0.00 3.16
2082 5414 6.174720 TGTTATGTGATACTCCCTCCATTC 57.825 41.667 0.00 0.00 0.00 2.67
2083 5415 5.071788 TGTTATGTGATACTCCCTCCATTCC 59.928 44.000 0.00 0.00 0.00 3.01
2084 5416 3.129262 TGTGATACTCCCTCCATTCCA 57.871 47.619 0.00 0.00 0.00 3.53
2085 5417 3.459828 TGTGATACTCCCTCCATTCCAA 58.540 45.455 0.00 0.00 0.00 3.53
2086 5418 3.849574 TGTGATACTCCCTCCATTCCAAA 59.150 43.478 0.00 0.00 0.00 3.28
2087 5419 4.290985 TGTGATACTCCCTCCATTCCAAAA 59.709 41.667 0.00 0.00 0.00 2.44
2088 5420 5.044179 TGTGATACTCCCTCCATTCCAAAAT 60.044 40.000 0.00 0.00 0.00 1.82
2089 5421 6.159575 TGTGATACTCCCTCCATTCCAAAATA 59.840 38.462 0.00 0.00 0.00 1.40
2090 5422 7.147141 TGTGATACTCCCTCCATTCCAAAATAT 60.147 37.037 0.00 0.00 0.00 1.28
2091 5423 7.725844 GTGATACTCCCTCCATTCCAAAATATT 59.274 37.037 0.00 0.00 0.00 1.28
2092 5424 7.725397 TGATACTCCCTCCATTCCAAAATATTG 59.275 37.037 0.00 0.00 36.25 1.90
2093 5425 5.842339 ACTCCCTCCATTCCAAAATATTGT 58.158 37.500 0.00 0.00 34.60 2.71
2094 5426 5.658190 ACTCCCTCCATTCCAAAATATTGTG 59.342 40.000 0.00 0.00 34.60 3.33
2095 5427 4.405358 TCCCTCCATTCCAAAATATTGTGC 59.595 41.667 0.00 0.00 34.60 4.57
2096 5428 4.161942 CCCTCCATTCCAAAATATTGTGCA 59.838 41.667 0.00 0.00 34.60 4.57
2097 5429 5.111293 CCTCCATTCCAAAATATTGTGCAC 58.889 41.667 10.75 10.75 34.60 4.57
2098 5430 5.083533 TCCATTCCAAAATATTGTGCACC 57.916 39.130 15.69 0.00 34.60 5.01
2099 5431 4.081198 TCCATTCCAAAATATTGTGCACCC 60.081 41.667 15.69 0.00 34.60 4.61
2100 5432 3.584406 TTCCAAAATATTGTGCACCCG 57.416 42.857 15.69 0.00 34.60 5.28
2101 5433 1.203523 TCCAAAATATTGTGCACCCGC 59.796 47.619 15.69 0.00 34.60 6.13
2102 5434 1.267365 CAAAATATTGTGCACCCGCG 58.733 50.000 15.69 0.00 42.97 6.46
2117 5449 4.388499 GCGCTTCCCGAGGTCCAA 62.388 66.667 0.00 0.00 40.02 3.53
2118 5450 2.434359 CGCTTCCCGAGGTCCAAC 60.434 66.667 0.00 0.00 40.02 3.77
2119 5451 2.943978 CGCTTCCCGAGGTCCAACT 61.944 63.158 0.00 0.00 40.02 3.16
2120 5452 1.375326 GCTTCCCGAGGTCCAACTT 59.625 57.895 0.00 0.00 0.00 2.66
2121 5453 0.250770 GCTTCCCGAGGTCCAACTTT 60.251 55.000 0.00 0.00 0.00 2.66
2122 5454 1.523758 CTTCCCGAGGTCCAACTTTG 58.476 55.000 0.00 0.00 0.00 2.77
2123 5455 1.071699 CTTCCCGAGGTCCAACTTTGA 59.928 52.381 0.00 0.00 0.00 2.69
2124 5456 0.395312 TCCCGAGGTCCAACTTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
2125 5457 0.605589 CCCGAGGTCCAACTTTGACC 60.606 60.000 4.16 4.16 39.18 4.02
2126 5458 0.107831 CCGAGGTCCAACTTTGACCA 59.892 55.000 13.24 0.00 41.22 4.02
2127 5459 1.271379 CCGAGGTCCAACTTTGACCAT 60.271 52.381 13.24 0.72 41.22 3.55
2128 5460 2.027561 CCGAGGTCCAACTTTGACCATA 60.028 50.000 13.24 0.00 41.22 2.74
2129 5461 3.558321 CCGAGGTCCAACTTTGACCATAA 60.558 47.826 13.24 0.00 41.22 1.90
2130 5462 4.069304 CGAGGTCCAACTTTGACCATAAA 58.931 43.478 13.24 0.00 41.22 1.40
2131 5463 4.700213 CGAGGTCCAACTTTGACCATAAAT 59.300 41.667 13.24 0.00 41.22 1.40
2132 5464 5.183140 CGAGGTCCAACTTTGACCATAAATT 59.817 40.000 13.24 0.00 41.22 1.82
2133 5465 6.294508 CGAGGTCCAACTTTGACCATAAATTT 60.295 38.462 13.24 0.00 41.22 1.82
2134 5466 7.094549 CGAGGTCCAACTTTGACCATAAATTTA 60.095 37.037 13.24 0.00 41.22 1.40
2135 5467 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
2136 5468 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
2137 5469 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
2138 5470 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
2139 5471 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
2140 5472 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
2141 5473 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
2142 5474 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
2143 5475 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
2144 5476 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
2145 5477 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
2146 5478 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
2147 5479 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
2148 5480 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
2149 5481 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
2150 5482 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
2151 5483 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
2152 5484 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
2153 5485 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
2154 5486 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
2155 5487 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
2162 5494 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
2163 5495 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
2164 5496 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
2165 5497 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
2215 5547 9.661563 TGAATACGAATTCACTGGTATAACTTT 57.338 29.630 6.22 0.00 45.17 2.66
2218 5550 6.608610 ACGAATTCACTGGTATAACTTTTGC 58.391 36.000 6.22 0.00 0.00 3.68
2219 5551 6.430000 ACGAATTCACTGGTATAACTTTTGCT 59.570 34.615 6.22 0.00 0.00 3.91
2220 5552 6.961554 CGAATTCACTGGTATAACTTTTGCTC 59.038 38.462 6.22 0.00 0.00 4.26
2221 5553 6.759497 ATTCACTGGTATAACTTTTGCTCC 57.241 37.500 0.00 0.00 0.00 4.70
2222 5554 4.585879 TCACTGGTATAACTTTTGCTCCC 58.414 43.478 0.00 0.00 0.00 4.30
2223 5555 3.374058 CACTGGTATAACTTTTGCTCCCG 59.626 47.826 0.00 0.00 0.00 5.14
2224 5556 2.354821 CTGGTATAACTTTTGCTCCCGC 59.645 50.000 0.00 0.00 0.00 6.13
2225 5557 1.674441 GGTATAACTTTTGCTCCCGCC 59.326 52.381 0.00 0.00 34.43 6.13
2226 5558 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
2227 5559 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
2228 5560 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
2229 5561 4.107051 CTTTTGCTCCCGCCGCAG 62.107 66.667 0.00 0.00 38.80 5.18
2230 5562 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
2231 5563 4.947147 TTTGCTCCCGCCGCAGTT 62.947 61.111 0.00 0.00 38.80 3.16
2238 5570 3.726517 CCGCCGCAGTTGGTCTTG 61.727 66.667 0.00 0.00 0.00 3.02
2239 5571 2.972505 CGCCGCAGTTGGTCTTGT 60.973 61.111 0.00 0.00 0.00 3.16
2240 5572 2.542907 CGCCGCAGTTGGTCTTGTT 61.543 57.895 0.00 0.00 0.00 2.83
2241 5573 1.008538 GCCGCAGTTGGTCTTGTTG 60.009 57.895 0.00 0.00 0.00 3.33
2242 5574 1.654220 CCGCAGTTGGTCTTGTTGG 59.346 57.895 0.00 0.00 0.00 3.77
2243 5575 1.101049 CCGCAGTTGGTCTTGTTGGT 61.101 55.000 0.00 0.00 0.00 3.67
2244 5576 0.738389 CGCAGTTGGTCTTGTTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
2245 5577 1.944024 CGCAGTTGGTCTTGTTGGTTA 59.056 47.619 0.00 0.00 0.00 2.85
2246 5578 2.356382 CGCAGTTGGTCTTGTTGGTTAA 59.644 45.455 0.00 0.00 0.00 2.01
2247 5579 3.181495 CGCAGTTGGTCTTGTTGGTTAAA 60.181 43.478 0.00 0.00 0.00 1.52
2248 5580 4.499019 CGCAGTTGGTCTTGTTGGTTAAAT 60.499 41.667 0.00 0.00 0.00 1.40
2249 5581 5.356426 GCAGTTGGTCTTGTTGGTTAAATT 58.644 37.500 0.00 0.00 0.00 1.82
2250 5582 5.462068 GCAGTTGGTCTTGTTGGTTAAATTC 59.538 40.000 0.00 0.00 0.00 2.17
2251 5583 6.568869 CAGTTGGTCTTGTTGGTTAAATTCA 58.431 36.000 0.00 0.00 0.00 2.57
2252 5584 7.209475 CAGTTGGTCTTGTTGGTTAAATTCAT 58.791 34.615 0.00 0.00 0.00 2.57
2253 5585 7.169645 CAGTTGGTCTTGTTGGTTAAATTCATG 59.830 37.037 0.00 0.00 0.00 3.07
2254 5586 6.095432 TGGTCTTGTTGGTTAAATTCATGG 57.905 37.500 0.00 0.00 0.00 3.66
2255 5587 5.600484 TGGTCTTGTTGGTTAAATTCATGGT 59.400 36.000 0.00 0.00 0.00 3.55
2256 5588 6.156519 GGTCTTGTTGGTTAAATTCATGGTC 58.843 40.000 0.00 0.00 0.00 4.02
2257 5589 6.239176 GGTCTTGTTGGTTAAATTCATGGTCA 60.239 38.462 0.00 0.00 0.00 4.02
2258 5590 7.206687 GTCTTGTTGGTTAAATTCATGGTCAA 58.793 34.615 0.00 0.00 0.00 3.18
2259 5591 7.708752 GTCTTGTTGGTTAAATTCATGGTCAAA 59.291 33.333 0.00 0.00 0.00 2.69
2260 5592 7.925483 TCTTGTTGGTTAAATTCATGGTCAAAG 59.075 33.333 0.00 0.00 0.00 2.77
2261 5593 7.118496 TGTTGGTTAAATTCATGGTCAAAGT 57.882 32.000 0.00 0.00 0.00 2.66
2262 5594 7.560368 TGTTGGTTAAATTCATGGTCAAAGTT 58.440 30.769 0.00 0.00 0.00 2.66
2263 5595 7.493971 TGTTGGTTAAATTCATGGTCAAAGTTG 59.506 33.333 0.00 0.00 0.00 3.16
2264 5596 7.353414 TGGTTAAATTCATGGTCAAAGTTGA 57.647 32.000 0.00 0.00 34.20 3.18
2265 5597 7.786030 TGGTTAAATTCATGGTCAAAGTTGAA 58.214 30.769 0.00 0.00 39.21 2.69
2266 5598 7.925483 TGGTTAAATTCATGGTCAAAGTTGAAG 59.075 33.333 0.00 0.00 39.21 3.02
2267 5599 7.095649 GGTTAAATTCATGGTCAAAGTTGAAGC 60.096 37.037 0.00 0.00 39.21 3.86
2268 5600 5.534207 AATTCATGGTCAAAGTTGAAGCA 57.466 34.783 0.00 0.00 39.21 3.91
2269 5601 3.988379 TCATGGTCAAAGTTGAAGCAC 57.012 42.857 0.00 0.00 39.21 4.40
2270 5602 3.286353 TCATGGTCAAAGTTGAAGCACA 58.714 40.909 0.00 0.00 39.21 4.57
2271 5603 3.316029 TCATGGTCAAAGTTGAAGCACAG 59.684 43.478 0.00 0.00 39.21 3.66
2272 5604 2.023673 TGGTCAAAGTTGAAGCACAGG 58.976 47.619 0.00 0.00 39.21 4.00
2273 5605 2.297701 GGTCAAAGTTGAAGCACAGGA 58.702 47.619 0.00 0.00 39.21 3.86
2274 5606 2.687935 GGTCAAAGTTGAAGCACAGGAA 59.312 45.455 0.00 0.00 39.21 3.36
2275 5607 3.319122 GGTCAAAGTTGAAGCACAGGAAT 59.681 43.478 0.00 0.00 39.21 3.01
2276 5608 4.518970 GGTCAAAGTTGAAGCACAGGAATA 59.481 41.667 0.00 0.00 39.21 1.75
2277 5609 5.335191 GGTCAAAGTTGAAGCACAGGAATAG 60.335 44.000 0.00 0.00 39.21 1.73
2278 5610 5.470098 GTCAAAGTTGAAGCACAGGAATAGA 59.530 40.000 0.00 0.00 39.21 1.98
2279 5611 5.702670 TCAAAGTTGAAGCACAGGAATAGAG 59.297 40.000 0.00 0.00 33.55 2.43
2280 5612 4.213564 AGTTGAAGCACAGGAATAGAGG 57.786 45.455 0.00 0.00 0.00 3.69
2281 5613 3.840666 AGTTGAAGCACAGGAATAGAGGA 59.159 43.478 0.00 0.00 0.00 3.71
2282 5614 4.287067 AGTTGAAGCACAGGAATAGAGGAA 59.713 41.667 0.00 0.00 0.00 3.36
2283 5615 4.478206 TGAAGCACAGGAATAGAGGAAG 57.522 45.455 0.00 0.00 0.00 3.46
2284 5616 2.998316 AGCACAGGAATAGAGGAAGC 57.002 50.000 0.00 0.00 0.00 3.86
2285 5617 2.191400 AGCACAGGAATAGAGGAAGCA 58.809 47.619 0.00 0.00 0.00 3.91
2286 5618 2.093235 AGCACAGGAATAGAGGAAGCAC 60.093 50.000 0.00 0.00 0.00 4.40
2287 5619 2.093235 GCACAGGAATAGAGGAAGCACT 60.093 50.000 0.00 0.00 0.00 4.40
2288 5620 3.133003 GCACAGGAATAGAGGAAGCACTA 59.867 47.826 0.00 0.00 0.00 2.74
2289 5621 4.202305 GCACAGGAATAGAGGAAGCACTAT 60.202 45.833 0.00 0.00 0.00 2.12
2290 5622 5.011125 GCACAGGAATAGAGGAAGCACTATA 59.989 44.000 0.00 0.00 0.00 1.31
2291 5623 6.295575 GCACAGGAATAGAGGAAGCACTATAT 60.296 42.308 0.00 0.00 0.00 0.86
2292 5624 7.675062 CACAGGAATAGAGGAAGCACTATATT 58.325 38.462 3.60 3.60 37.52 1.28
2293 5625 8.153550 CACAGGAATAGAGGAAGCACTATATTT 58.846 37.037 5.02 0.00 35.62 1.40
2294 5626 8.718656 ACAGGAATAGAGGAAGCACTATATTTT 58.281 33.333 5.02 0.00 35.62 1.82
2295 5627 8.997323 CAGGAATAGAGGAAGCACTATATTTTG 58.003 37.037 5.02 4.32 35.62 2.44
2296 5628 8.160106 AGGAATAGAGGAAGCACTATATTTTGG 58.840 37.037 5.02 0.00 35.62 3.28
2297 5629 8.157476 GGAATAGAGGAAGCACTATATTTTGGA 58.843 37.037 5.02 0.00 35.62 3.53
2298 5630 9.561069 GAATAGAGGAAGCACTATATTTTGGAA 57.439 33.333 5.02 0.00 35.62 3.53
2300 5632 7.814264 AGAGGAAGCACTATATTTTGGAATG 57.186 36.000 0.00 0.00 0.00 2.67
2301 5633 6.774656 AGAGGAAGCACTATATTTTGGAATGG 59.225 38.462 0.00 0.00 0.00 3.16
2302 5634 6.672593 AGGAAGCACTATATTTTGGAATGGA 58.327 36.000 0.00 0.00 0.00 3.41
2303 5635 6.774656 AGGAAGCACTATATTTTGGAATGGAG 59.225 38.462 0.00 0.00 0.00 3.86
2304 5636 6.015940 GGAAGCACTATATTTTGGAATGGAGG 60.016 42.308 0.00 0.00 0.00 4.30
2305 5637 5.388654 AGCACTATATTTTGGAATGGAGGG 58.611 41.667 0.00 0.00 0.00 4.30
2306 5638 5.134339 AGCACTATATTTTGGAATGGAGGGA 59.866 40.000 0.00 0.00 0.00 4.20
2307 5639 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2395 5732 7.903145 TCCTCATTAGTTAGTACTGAAGCAAA 58.097 34.615 5.39 0.00 35.78 3.68
2506 5843 0.533308 ACTTTCTTGGTGCCGCGTTA 60.533 50.000 4.92 0.00 0.00 3.18
2600 5937 4.929211 CCACGATGTGAGTTGAAACAGATA 59.071 41.667 0.00 0.00 35.23 1.98
2682 6019 8.481314 AGTTTCAGCTAGACAATAATCATGAGA 58.519 33.333 0.09 0.00 0.00 3.27
2694 6031 7.392673 ACAATAATCATGAGACTTGCTTGTCTT 59.607 33.333 12.13 0.85 46.11 3.01
2992 6329 1.476845 TAGGCGTCAGCTGTTCCCAA 61.477 55.000 14.67 2.47 44.37 4.12
3094 6431 4.455877 CCATCAGTACTTTTCAGTTGGGAC 59.544 45.833 0.00 0.00 34.06 4.46
3095 6432 5.308825 CATCAGTACTTTTCAGTTGGGACT 58.691 41.667 0.00 0.00 36.25 3.85
3296 6648 0.964700 TGGGATTTTCATGCGTTGCA 59.035 45.000 0.00 0.00 44.86 4.08
3385 6737 6.904543 GCACAAAACTTGCGTAAAAATTCATT 59.095 30.769 0.00 0.00 0.00 2.57
3511 6864 8.893563 TCAATTATTTCCCATCTTAGGTTGTT 57.106 30.769 0.00 0.00 0.00 2.83
3515 6868 8.713708 TTATTTCCCATCTTAGGTTGTTGAAA 57.286 30.769 0.00 0.00 0.00 2.69
3596 6949 8.092521 TGAAAAGTTTGAAACAAAGCAAATCA 57.907 26.923 11.02 1.03 36.51 2.57
3721 7075 2.179949 GCCTTCAGCACGCTATTTTC 57.820 50.000 0.00 0.00 42.97 2.29
3834 7189 3.769844 AGATACGAACACCCTTGTCATCT 59.230 43.478 0.00 0.00 33.55 2.90
3893 7248 7.882791 TGATGCAAGAGAAAACACCTTAGATAA 59.117 33.333 0.00 0.00 0.00 1.75
3928 7284 7.201635 CCATTGATCTTGTTTATGTCGATGACA 60.202 37.037 1.65 1.65 46.90 3.58
3941 7297 1.061131 CGATGACACACTCGAAATGGC 59.939 52.381 1.75 0.00 37.05 4.40
3993 7349 1.649321 ACATGCAGAGGGTCTCAGAA 58.351 50.000 0.00 0.00 32.06 3.02
4002 7358 3.710677 AGAGGGTCTCAGAATCCTTGATG 59.289 47.826 0.00 0.00 32.06 3.07
4023 7379 1.073284 GTGCCAAAACCCTCTACCTCA 59.927 52.381 0.00 0.00 0.00 3.86
4026 7382 2.615747 GCCAAAACCCTCTACCTCAGAC 60.616 54.545 0.00 0.00 0.00 3.51
4049 7405 2.873472 CGTAGTAGGAGCTGAAGTCGAT 59.127 50.000 0.00 0.00 0.00 3.59
4123 7479 8.956426 TGATATAGATATGTCACATAGTCGCAA 58.044 33.333 3.38 0.00 30.34 4.85
4129 7485 2.230266 TGTCACATAGTCGCAACTAGCA 59.770 45.455 0.00 0.00 46.13 3.49
4133 7489 2.099263 ACATAGTCGCAACTAGCATCGT 59.901 45.455 0.00 0.00 46.13 3.73
4191 7547 1.351017 CCTGGCAGTTCCCTGAAACTA 59.649 52.381 14.43 0.00 41.50 2.24
4238 7594 2.340337 GAATGCTTTGACCATGGTTGC 58.660 47.619 20.85 19.92 0.00 4.17
4293 7649 2.282745 GCAAGCCCTGCCTTCTGT 60.283 61.111 0.00 0.00 46.13 3.41
4332 7688 5.165676 CCAGATGTGTACTGCGTAGTAAAA 58.834 41.667 15.26 4.18 40.89 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.056607 TGTTACCTCGCCCTTAGTGTTAC 60.057 47.826 0.00 0.00 0.00 2.50
1 2 3.164268 TGTTACCTCGCCCTTAGTGTTA 58.836 45.455 0.00 0.00 0.00 2.41
2 3 1.972795 TGTTACCTCGCCCTTAGTGTT 59.027 47.619 0.00 0.00 0.00 3.32
3 4 1.636148 TGTTACCTCGCCCTTAGTGT 58.364 50.000 0.00 0.00 0.00 3.55
4 5 2.167693 TGATGTTACCTCGCCCTTAGTG 59.832 50.000 0.00 0.00 0.00 2.74
5 6 2.463752 TGATGTTACCTCGCCCTTAGT 58.536 47.619 0.00 0.00 0.00 2.24
6 7 3.118738 ACTTGATGTTACCTCGCCCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
7 8 2.835764 ACTTGATGTTACCTCGCCCTTA 59.164 45.455 0.00 0.00 0.00 2.69
8 9 1.628846 ACTTGATGTTACCTCGCCCTT 59.371 47.619 0.00 0.00 0.00 3.95
9 10 1.276622 ACTTGATGTTACCTCGCCCT 58.723 50.000 0.00 0.00 0.00 5.19
10 11 2.109425 AACTTGATGTTACCTCGCCC 57.891 50.000 0.00 0.00 37.07 6.13
11 12 3.335579 AGAAACTTGATGTTACCTCGCC 58.664 45.455 0.00 0.00 38.03 5.54
12 13 6.663944 AATAGAAACTTGATGTTACCTCGC 57.336 37.500 0.00 0.00 38.03 5.03
13 14 8.251750 TCAAATAGAAACTTGATGTTACCTCG 57.748 34.615 0.00 0.00 38.03 4.63
14 15 9.220767 ACTCAAATAGAAACTTGATGTTACCTC 57.779 33.333 0.00 0.00 38.03 3.85
15 16 9.003658 CACTCAAATAGAAACTTGATGTTACCT 57.996 33.333 0.00 0.00 38.03 3.08
16 17 8.784043 ACACTCAAATAGAAACTTGATGTTACC 58.216 33.333 0.00 0.00 38.03 2.85
17 18 9.599322 CACACTCAAATAGAAACTTGATGTTAC 57.401 33.333 0.00 0.00 38.03 2.50
18 19 9.337396 ACACACTCAAATAGAAACTTGATGTTA 57.663 29.630 0.00 0.00 38.03 2.41
19 20 8.225603 ACACACTCAAATAGAAACTTGATGTT 57.774 30.769 0.00 0.00 41.29 2.71
20 21 7.807977 ACACACTCAAATAGAAACTTGATGT 57.192 32.000 0.00 0.00 31.40 3.06
21 22 8.961092 CAAACACACTCAAATAGAAACTTGATG 58.039 33.333 0.00 0.00 31.40 3.07
22 23 8.686334 ACAAACACACTCAAATAGAAACTTGAT 58.314 29.630 0.00 0.00 31.40 2.57
23 24 8.050778 ACAAACACACTCAAATAGAAACTTGA 57.949 30.769 0.00 0.00 0.00 3.02
24 25 9.781834 TTACAAACACACTCAAATAGAAACTTG 57.218 29.630 0.00 0.00 0.00 3.16
26 27 8.621286 CCTTACAAACACACTCAAATAGAAACT 58.379 33.333 0.00 0.00 0.00 2.66
27 28 7.860872 CCCTTACAAACACACTCAAATAGAAAC 59.139 37.037 0.00 0.00 0.00 2.78
73 74 3.414549 TCTTTTGTTGTTGCGAAGGTC 57.585 42.857 0.00 0.00 0.00 3.85
92 93 4.395959 AAAAGGGGTTTTCGAAAGGTTC 57.604 40.909 10.98 3.37 0.00 3.62
93 94 4.223255 TCAAAAAGGGGTTTTCGAAAGGTT 59.777 37.500 10.98 0.00 37.32 3.50
94 95 3.770388 TCAAAAAGGGGTTTTCGAAAGGT 59.230 39.130 10.98 0.00 37.32 3.50
95 96 4.142026 ACTCAAAAAGGGGTTTTCGAAAGG 60.142 41.667 10.98 0.00 37.32 3.11
96 97 5.006153 ACTCAAAAAGGGGTTTTCGAAAG 57.994 39.130 10.98 0.00 37.32 2.62
97 98 5.408880 AACTCAAAAAGGGGTTTTCGAAA 57.591 34.783 6.47 6.47 37.32 3.46
98 99 6.527057 TTAACTCAAAAAGGGGTTTTCGAA 57.473 33.333 0.00 0.00 37.32 3.71
99 100 6.377712 TCTTTAACTCAAAAAGGGGTTTTCGA 59.622 34.615 0.00 0.00 37.32 3.71
100 101 6.566141 TCTTTAACTCAAAAAGGGGTTTTCG 58.434 36.000 0.00 0.00 37.32 3.46
102 103 6.884832 CCTCTTTAACTCAAAAAGGGGTTTT 58.115 36.000 6.35 0.00 45.73 2.43
103 104 6.479972 CCTCTTTAACTCAAAAAGGGGTTT 57.520 37.500 6.35 0.00 45.73 3.27
107 108 5.073428 AGAGCCTCTTTAACTCAAAAAGGG 58.927 41.667 0.00 0.00 35.18 3.95
108 109 6.641169 AAGAGCCTCTTTAACTCAAAAAGG 57.359 37.500 0.00 0.00 31.57 3.11
110 111 8.947115 GCTATAAGAGCCTCTTTAACTCAAAAA 58.053 33.333 13.04 0.00 46.41 1.94
139 144 5.453903 CCAAAACAATGGTGGGTCATTTGTA 60.454 40.000 0.00 0.00 35.40 2.41
141 146 3.814283 CCAAAACAATGGTGGGTCATTTG 59.186 43.478 0.00 0.00 35.40 2.32
142 147 3.181446 CCCAAAACAATGGTGGGTCATTT 60.181 43.478 9.86 0.00 46.03 2.32
143 148 2.371510 CCCAAAACAATGGTGGGTCATT 59.628 45.455 9.86 0.00 46.03 2.57
144 149 1.977129 CCCAAAACAATGGTGGGTCAT 59.023 47.619 9.86 0.00 46.03 3.06
149 154 3.837731 ACCTATTCCCAAAACAATGGTGG 59.162 43.478 0.00 0.00 38.91 4.61
150 155 4.526262 TGACCTATTCCCAAAACAATGGTG 59.474 41.667 0.00 0.00 38.91 4.17
151 156 4.746466 TGACCTATTCCCAAAACAATGGT 58.254 39.130 0.00 0.00 38.91 3.55
172 776 3.815401 GACGATGGAATTTGGGTAGGATG 59.185 47.826 0.00 0.00 0.00 3.51
182 786 3.950397 TGCCAAGTAGACGATGGAATTT 58.050 40.909 10.58 0.00 36.27 1.82
238 843 0.179234 TCCGCTGACTTGTTGACCAA 59.821 50.000 0.00 0.00 0.00 3.67
241 846 1.423395 CTCTCCGCTGACTTGTTGAC 58.577 55.000 0.00 0.00 0.00 3.18
255 860 6.042666 ACATTTCCTTCTAGCTTATCCTCTCC 59.957 42.308 0.00 0.00 0.00 3.71
264 869 6.365970 TCTCTTGACATTTCCTTCTAGCTT 57.634 37.500 0.00 0.00 0.00 3.74
300 905 6.078664 CCCTCATCCCTCTACTTAATGTACT 58.921 44.000 0.00 0.00 0.00 2.73
301 906 6.075984 TCCCTCATCCCTCTACTTAATGTAC 58.924 44.000 0.00 0.00 0.00 2.90
302 907 6.289482 TCCCTCATCCCTCTACTTAATGTA 57.711 41.667 0.00 0.00 0.00 2.29
303 908 5.151454 CTCCCTCATCCCTCTACTTAATGT 58.849 45.833 0.00 0.00 0.00 2.71
304 909 4.020662 GCTCCCTCATCCCTCTACTTAATG 60.021 50.000 0.00 0.00 0.00 1.90
305 910 4.140567 AGCTCCCTCATCCCTCTACTTAAT 60.141 45.833 0.00 0.00 0.00 1.40
306 911 3.207777 AGCTCCCTCATCCCTCTACTTAA 59.792 47.826 0.00 0.00 0.00 1.85
307 912 2.792370 AGCTCCCTCATCCCTCTACTTA 59.208 50.000 0.00 0.00 0.00 2.24
308 913 1.578215 AGCTCCCTCATCCCTCTACTT 59.422 52.381 0.00 0.00 0.00 2.24
309 914 1.240527 AGCTCCCTCATCCCTCTACT 58.759 55.000 0.00 0.00 0.00 2.57
317 922 1.663173 GCGGACTAGCTCCCTCATC 59.337 63.158 0.00 0.00 35.21 2.92
323 928 2.210961 GTAAAATGGCGGACTAGCTCC 58.789 52.381 0.00 0.00 37.29 4.70
340 945 4.090819 GGGAGGCAGGTTTTTAATGGTAA 58.909 43.478 0.00 0.00 0.00 2.85
341 946 3.335484 AGGGAGGCAGGTTTTTAATGGTA 59.665 43.478 0.00 0.00 0.00 3.25
350 955 0.038744 CATGTCAGGGAGGCAGGTTT 59.961 55.000 0.00 0.00 33.74 3.27
387 3661 7.227512 CGGTGGAAATTTATGATCTCTTAGCTT 59.772 37.037 0.00 0.00 0.00 3.74
389 3663 6.073003 CCGGTGGAAATTTATGATCTCTTAGC 60.073 42.308 0.00 0.00 0.00 3.09
409 3683 1.299541 GATCATAACAGGTGCCGGTG 58.700 55.000 1.90 0.00 0.00 4.94
413 3687 3.068590 CCCAAATGATCATAACAGGTGCC 59.931 47.826 9.04 0.00 0.00 5.01
414 3688 3.491447 GCCCAAATGATCATAACAGGTGC 60.491 47.826 9.04 9.95 0.00 5.01
415 3689 3.068590 GGCCCAAATGATCATAACAGGTG 59.931 47.826 9.04 4.70 0.00 4.00
416 3690 3.299503 GGCCCAAATGATCATAACAGGT 58.700 45.455 9.04 0.00 0.00 4.00
425 3699 4.799564 TTTAGTGTTGGCCCAAATGATC 57.200 40.909 0.00 0.00 0.00 2.92
426 3700 5.760484 AATTTAGTGTTGGCCCAAATGAT 57.240 34.783 0.00 0.00 0.00 2.45
427 3701 5.559148 AAATTTAGTGTTGGCCCAAATGA 57.441 34.783 0.00 0.00 0.00 2.57
428 3702 6.631971 AAAAATTTAGTGTTGGCCCAAATG 57.368 33.333 0.00 0.00 0.00 2.32
502 3776 8.229137 CGACCGTGACAAGGTTTTATTTATTTA 58.771 33.333 14.57 0.00 43.01 1.40
503 3777 7.079475 CGACCGTGACAAGGTTTTATTTATTT 58.921 34.615 14.57 0.00 43.01 1.40
504 3778 6.604930 CGACCGTGACAAGGTTTTATTTATT 58.395 36.000 14.57 0.00 43.01 1.40
508 3782 2.224784 GCGACCGTGACAAGGTTTTATT 59.775 45.455 14.57 0.00 43.01 1.40
509 3783 1.802365 GCGACCGTGACAAGGTTTTAT 59.198 47.619 14.57 0.00 43.01 1.40
511 3785 0.745128 TGCGACCGTGACAAGGTTTT 60.745 50.000 14.57 0.00 43.01 2.43
515 3789 3.041940 GGTGCGACCGTGACAAGG 61.042 66.667 5.81 5.81 0.00 3.61
658 3954 4.832608 GAAAGCGTCGGCGGGGAT 62.833 66.667 13.05 0.00 46.35 3.85
1048 4347 2.203640 TGGAGACAGCAGGGACGT 60.204 61.111 0.00 0.00 35.01 4.34
1081 4380 0.037590 CCTCAAACCCCAATGACCGA 59.962 55.000 0.00 0.00 0.00 4.69
1231 4532 3.763057 TCTACGGGCAGAATCATAGCTA 58.237 45.455 0.00 0.00 0.00 3.32
1252 4553 8.102484 TGATTAGTCTAAATAGGGCTCCTTTT 57.898 34.615 0.00 3.79 34.61 2.27
1258 4559 7.210873 CGACTTTGATTAGTCTAAATAGGGCT 58.789 38.462 0.00 0.00 41.89 5.19
1260 4561 7.210873 AGCGACTTTGATTAGTCTAAATAGGG 58.789 38.462 0.00 0.00 41.89 3.53
1264 4565 8.779354 AAAGAGCGACTTTGATTAGTCTAAAT 57.221 30.769 10.23 0.00 45.66 1.40
1285 4588 4.575885 AGCTATAAAGACACGGCAAAAGA 58.424 39.130 0.00 0.00 0.00 2.52
1381 4684 5.923733 GGATACGAGGATGATATGGAACT 57.076 43.478 0.00 0.00 0.00 3.01
1412 4717 8.144478 AGCTACGAACATTATGAAGTGACATAT 58.856 33.333 0.00 0.00 33.60 1.78
1415 4720 5.720202 AGCTACGAACATTATGAAGTGACA 58.280 37.500 0.00 0.00 0.00 3.58
1427 4732 7.097192 TCTCATTAAGTTGAAGCTACGAACAT 58.903 34.615 0.00 0.00 0.00 2.71
1457 4763 4.206244 AGCACCTCTATAACCATCTCCT 57.794 45.455 0.00 0.00 0.00 3.69
1542 4848 7.979537 ACATGACGCTATCATACTAGTTCAAAA 59.020 33.333 0.00 0.00 46.96 2.44
1548 4854 8.577296 ACATAAACATGACGCTATCATACTAGT 58.423 33.333 0.00 0.00 46.96 2.57
1556 4862 8.667987 TTTTGAAACATAAACATGACGCTATC 57.332 30.769 0.00 0.00 0.00 2.08
1557 4863 7.273381 GCTTTTGAAACATAAACATGACGCTAT 59.727 33.333 0.00 0.00 0.00 2.97
1581 4887 1.192146 TTTGAGCAGACGGGTAGGCT 61.192 55.000 0.00 0.00 40.36 4.58
1582 4888 0.741221 CTTTGAGCAGACGGGTAGGC 60.741 60.000 0.00 0.00 0.00 3.93
1584 4890 2.743636 TTCTTTGAGCAGACGGGTAG 57.256 50.000 0.00 0.00 0.00 3.18
1585 4891 2.565391 TCATTCTTTGAGCAGACGGGTA 59.435 45.455 0.00 0.00 0.00 3.69
1586 4892 1.347707 TCATTCTTTGAGCAGACGGGT 59.652 47.619 0.00 0.00 0.00 5.28
1611 4917 5.241949 ACATAACAGGTAAATGCAAACCGAA 59.758 36.000 9.77 0.18 40.88 4.30
1615 4921 7.436673 TGAAACACATAACAGGTAAATGCAAAC 59.563 33.333 0.00 0.00 0.00 2.93
1632 4938 7.776969 AGCTGTATATTCCAAGATGAAACACAT 59.223 33.333 0.00 0.00 42.47 3.21
1751 5070 2.895404 ACCAGAATGCCAATGGATATGC 59.105 45.455 2.05 0.00 37.54 3.14
1939 5271 0.478072 AACCATGTTCAGGGCTCACA 59.522 50.000 3.32 0.00 0.00 3.58
1940 5272 1.168714 GAACCATGTTCAGGGCTCAC 58.831 55.000 3.32 0.00 0.00 3.51
1977 5309 0.611896 ATGGGAAAAGAGTTGGCCCG 60.612 55.000 0.00 0.00 41.79 6.13
2070 5402 5.658190 CACAATATTTTGGAATGGAGGGAGT 59.342 40.000 0.89 0.00 37.15 3.85
2071 5403 5.452356 GCACAATATTTTGGAATGGAGGGAG 60.452 44.000 3.87 0.00 37.15 4.30
2072 5404 4.405358 GCACAATATTTTGGAATGGAGGGA 59.595 41.667 3.87 0.00 37.15 4.20
2073 5405 4.161942 TGCACAATATTTTGGAATGGAGGG 59.838 41.667 3.87 0.00 37.15 4.30
2074 5406 5.111293 GTGCACAATATTTTGGAATGGAGG 58.889 41.667 13.17 0.00 37.15 4.30
2075 5407 5.111293 GGTGCACAATATTTTGGAATGGAG 58.889 41.667 20.43 0.00 37.15 3.86
2076 5408 4.081198 GGGTGCACAATATTTTGGAATGGA 60.081 41.667 20.43 0.00 37.15 3.41
2077 5409 4.190772 GGGTGCACAATATTTTGGAATGG 58.809 43.478 20.43 0.00 37.15 3.16
2078 5410 3.864583 CGGGTGCACAATATTTTGGAATG 59.135 43.478 20.43 0.00 37.15 2.67
2079 5411 3.678529 GCGGGTGCACAATATTTTGGAAT 60.679 43.478 20.43 0.00 42.15 3.01
2080 5412 2.353208 GCGGGTGCACAATATTTTGGAA 60.353 45.455 20.43 0.00 42.15 3.53
2081 5413 1.203523 GCGGGTGCACAATATTTTGGA 59.796 47.619 20.43 0.00 42.15 3.53
2082 5414 1.639280 GCGGGTGCACAATATTTTGG 58.361 50.000 20.43 0.00 42.15 3.28
2083 5415 1.267365 CGCGGGTGCACAATATTTTG 58.733 50.000 20.43 0.00 42.97 2.44
2084 5416 0.457681 GCGCGGGTGCACAATATTTT 60.458 50.000 20.43 0.00 42.97 1.82
2085 5417 1.138671 GCGCGGGTGCACAATATTT 59.861 52.632 20.43 0.00 42.97 1.40
2086 5418 1.312371 AAGCGCGGGTGCACAATATT 61.312 50.000 20.43 2.32 42.97 1.28
2087 5419 1.714899 GAAGCGCGGGTGCACAATAT 61.715 55.000 20.43 0.00 42.97 1.28
2088 5420 2.359354 AAGCGCGGGTGCACAATA 60.359 55.556 20.43 0.00 42.97 1.90
2089 5421 3.737172 GAAGCGCGGGTGCACAAT 61.737 61.111 20.43 0.00 42.97 2.71
2100 5432 4.388499 TTGGACCTCGGGAAGCGC 62.388 66.667 0.00 0.00 0.00 5.92
2101 5433 2.434359 GTTGGACCTCGGGAAGCG 60.434 66.667 0.00 0.00 0.00 4.68
2102 5434 0.250770 AAAGTTGGACCTCGGGAAGC 60.251 55.000 0.00 0.00 0.00 3.86
2103 5435 1.071699 TCAAAGTTGGACCTCGGGAAG 59.928 52.381 0.00 0.00 0.00 3.46
2104 5436 1.133363 TCAAAGTTGGACCTCGGGAA 58.867 50.000 0.00 0.00 0.00 3.97
2105 5437 0.395312 GTCAAAGTTGGACCTCGGGA 59.605 55.000 0.00 0.00 0.00 5.14
2106 5438 2.928416 GTCAAAGTTGGACCTCGGG 58.072 57.895 0.00 0.00 0.00 5.14
2112 5444 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
2113 5445 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
2114 5446 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
2115 5447 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
2116 5448 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
2117 5449 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
2118 5450 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
2119 5451 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
2120 5452 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
2121 5453 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
2122 5454 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
2123 5455 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
2124 5456 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
2125 5457 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
2126 5458 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
2127 5459 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
2128 5460 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
2129 5461 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
2130 5462 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
2131 5463 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
2132 5464 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
2133 5465 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
2134 5466 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
2135 5467 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
2136 5468 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
2137 5469 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
2138 5470 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
2145 5477 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
2146 5478 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
2147 5479 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
2148 5480 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
2189 5521 9.661563 AAAGTTATACCAGTGAATTCGTATTCA 57.338 29.630 12.80 12.80 45.99 2.57
2192 5524 8.395633 GCAAAAGTTATACCAGTGAATTCGTAT 58.604 33.333 0.04 5.16 0.00 3.06
2193 5525 7.604927 AGCAAAAGTTATACCAGTGAATTCGTA 59.395 33.333 0.04 0.00 0.00 3.43
2194 5526 6.430000 AGCAAAAGTTATACCAGTGAATTCGT 59.570 34.615 0.04 0.00 0.00 3.85
2195 5527 6.842163 AGCAAAAGTTATACCAGTGAATTCG 58.158 36.000 0.04 0.00 0.00 3.34
2196 5528 7.251281 GGAGCAAAAGTTATACCAGTGAATTC 58.749 38.462 0.00 0.00 0.00 2.17
2197 5529 6.152831 GGGAGCAAAAGTTATACCAGTGAATT 59.847 38.462 0.00 0.00 0.00 2.17
2198 5530 5.652452 GGGAGCAAAAGTTATACCAGTGAAT 59.348 40.000 0.00 0.00 0.00 2.57
2199 5531 5.007682 GGGAGCAAAAGTTATACCAGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
2200 5532 4.585879 GGGAGCAAAAGTTATACCAGTGA 58.414 43.478 0.00 0.00 0.00 3.41
2201 5533 3.374058 CGGGAGCAAAAGTTATACCAGTG 59.626 47.826 0.00 0.00 0.00 3.66
2202 5534 3.606687 CGGGAGCAAAAGTTATACCAGT 58.393 45.455 0.00 0.00 0.00 4.00
2221 5553 3.726517 CAAGACCAACTGCGGCGG 61.727 66.667 9.78 7.39 0.00 6.13
2222 5554 2.542907 AACAAGACCAACTGCGGCG 61.543 57.895 0.51 0.51 0.00 6.46
2223 5555 1.008538 CAACAAGACCAACTGCGGC 60.009 57.895 0.00 0.00 0.00 6.53
2224 5556 1.101049 ACCAACAAGACCAACTGCGG 61.101 55.000 0.00 0.00 0.00 5.69
2225 5557 0.738389 AACCAACAAGACCAACTGCG 59.262 50.000 0.00 0.00 0.00 5.18
2226 5558 4.379339 TTTAACCAACAAGACCAACTGC 57.621 40.909 0.00 0.00 0.00 4.40
2227 5559 6.568869 TGAATTTAACCAACAAGACCAACTG 58.431 36.000 0.00 0.00 0.00 3.16
2228 5560 6.783708 TGAATTTAACCAACAAGACCAACT 57.216 33.333 0.00 0.00 0.00 3.16
2229 5561 6.423604 CCATGAATTTAACCAACAAGACCAAC 59.576 38.462 0.00 0.00 0.00 3.77
2230 5562 6.098982 ACCATGAATTTAACCAACAAGACCAA 59.901 34.615 0.00 0.00 0.00 3.67
2231 5563 5.600484 ACCATGAATTTAACCAACAAGACCA 59.400 36.000 0.00 0.00 0.00 4.02
2232 5564 6.096673 ACCATGAATTTAACCAACAAGACC 57.903 37.500 0.00 0.00 0.00 3.85
2233 5565 6.744112 TGACCATGAATTTAACCAACAAGAC 58.256 36.000 0.00 0.00 0.00 3.01
2234 5566 6.968263 TGACCATGAATTTAACCAACAAGA 57.032 33.333 0.00 0.00 0.00 3.02
2235 5567 7.710475 ACTTTGACCATGAATTTAACCAACAAG 59.290 33.333 0.00 0.00 0.00 3.16
2236 5568 7.560368 ACTTTGACCATGAATTTAACCAACAA 58.440 30.769 0.00 0.00 0.00 2.83
2237 5569 7.118496 ACTTTGACCATGAATTTAACCAACA 57.882 32.000 0.00 0.00 0.00 3.33
2238 5570 7.708752 TCAACTTTGACCATGAATTTAACCAAC 59.291 33.333 0.00 0.00 31.01 3.77
2239 5571 7.786030 TCAACTTTGACCATGAATTTAACCAA 58.214 30.769 0.00 0.00 31.01 3.67
2240 5572 7.353414 TCAACTTTGACCATGAATTTAACCA 57.647 32.000 0.00 0.00 31.01 3.67
2241 5573 7.095649 GCTTCAACTTTGACCATGAATTTAACC 60.096 37.037 0.00 0.00 36.83 2.85
2242 5574 7.437862 TGCTTCAACTTTGACCATGAATTTAAC 59.562 33.333 0.00 0.00 36.83 2.01
2243 5575 7.437862 GTGCTTCAACTTTGACCATGAATTTAA 59.562 33.333 0.00 0.00 36.83 1.52
2244 5576 6.922957 GTGCTTCAACTTTGACCATGAATTTA 59.077 34.615 0.00 0.00 36.83 1.40
2245 5577 5.754890 GTGCTTCAACTTTGACCATGAATTT 59.245 36.000 0.00 0.00 36.83 1.82
2246 5578 5.163426 TGTGCTTCAACTTTGACCATGAATT 60.163 36.000 0.00 0.00 36.83 2.17
2247 5579 4.341806 TGTGCTTCAACTTTGACCATGAAT 59.658 37.500 0.00 0.00 36.83 2.57
2248 5580 3.698539 TGTGCTTCAACTTTGACCATGAA 59.301 39.130 0.00 0.00 36.83 2.57
2249 5581 3.286353 TGTGCTTCAACTTTGACCATGA 58.714 40.909 0.00 0.00 36.83 3.07
2250 5582 3.551454 CCTGTGCTTCAACTTTGACCATG 60.551 47.826 0.00 0.00 36.83 3.66
2251 5583 2.624838 CCTGTGCTTCAACTTTGACCAT 59.375 45.455 0.00 0.00 36.83 3.55
2252 5584 2.023673 CCTGTGCTTCAACTTTGACCA 58.976 47.619 0.00 0.00 36.83 4.02
2253 5585 2.297701 TCCTGTGCTTCAACTTTGACC 58.702 47.619 0.00 0.00 36.83 4.02
2254 5586 4.574599 ATTCCTGTGCTTCAACTTTGAC 57.425 40.909 0.00 0.00 36.83 3.18
2255 5587 5.620206 TCTATTCCTGTGCTTCAACTTTGA 58.380 37.500 0.00 0.00 34.92 2.69
2256 5588 5.106396 CCTCTATTCCTGTGCTTCAACTTTG 60.106 44.000 0.00 0.00 0.00 2.77
2257 5589 5.006386 CCTCTATTCCTGTGCTTCAACTTT 58.994 41.667 0.00 0.00 0.00 2.66
2258 5590 4.287067 TCCTCTATTCCTGTGCTTCAACTT 59.713 41.667 0.00 0.00 0.00 2.66
2259 5591 3.840666 TCCTCTATTCCTGTGCTTCAACT 59.159 43.478 0.00 0.00 0.00 3.16
2260 5592 4.207891 TCCTCTATTCCTGTGCTTCAAC 57.792 45.455 0.00 0.00 0.00 3.18
2261 5593 4.836825 CTTCCTCTATTCCTGTGCTTCAA 58.163 43.478 0.00 0.00 0.00 2.69
2262 5594 3.369892 GCTTCCTCTATTCCTGTGCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
2263 5595 3.202097 GCTTCCTCTATTCCTGTGCTTC 58.798 50.000 0.00 0.00 0.00 3.86
2264 5596 2.573462 TGCTTCCTCTATTCCTGTGCTT 59.427 45.455 0.00 0.00 0.00 3.91
2265 5597 2.093235 GTGCTTCCTCTATTCCTGTGCT 60.093 50.000 0.00 0.00 0.00 4.40
2266 5598 2.093235 AGTGCTTCCTCTATTCCTGTGC 60.093 50.000 0.00 0.00 0.00 4.57
2267 5599 3.902881 AGTGCTTCCTCTATTCCTGTG 57.097 47.619 0.00 0.00 0.00 3.66
2268 5600 7.863901 AATATAGTGCTTCCTCTATTCCTGT 57.136 36.000 0.00 0.00 31.97 4.00
2269 5601 8.997323 CAAAATATAGTGCTTCCTCTATTCCTG 58.003 37.037 0.00 0.00 31.97 3.86
2270 5602 8.160106 CCAAAATATAGTGCTTCCTCTATTCCT 58.840 37.037 0.00 0.00 31.97 3.36
2271 5603 8.157476 TCCAAAATATAGTGCTTCCTCTATTCC 58.843 37.037 0.00 0.00 31.97 3.01
2272 5604 9.561069 TTCCAAAATATAGTGCTTCCTCTATTC 57.439 33.333 0.00 0.00 31.97 1.75
2274 5606 9.512588 CATTCCAAAATATAGTGCTTCCTCTAT 57.487 33.333 0.00 0.00 33.61 1.98
2275 5607 7.939039 CCATTCCAAAATATAGTGCTTCCTCTA 59.061 37.037 0.00 0.00 0.00 2.43
2276 5608 6.774656 CCATTCCAAAATATAGTGCTTCCTCT 59.225 38.462 0.00 0.00 0.00 3.69
2277 5609 6.772716 TCCATTCCAAAATATAGTGCTTCCTC 59.227 38.462 0.00 0.00 0.00 3.71
2278 5610 6.672593 TCCATTCCAAAATATAGTGCTTCCT 58.327 36.000 0.00 0.00 0.00 3.36
2279 5611 6.015940 CCTCCATTCCAAAATATAGTGCTTCC 60.016 42.308 0.00 0.00 0.00 3.46
2280 5612 6.015940 CCCTCCATTCCAAAATATAGTGCTTC 60.016 42.308 0.00 0.00 0.00 3.86
2281 5613 5.835280 CCCTCCATTCCAAAATATAGTGCTT 59.165 40.000 0.00 0.00 0.00 3.91
2282 5614 5.134339 TCCCTCCATTCCAAAATATAGTGCT 59.866 40.000 0.00 0.00 0.00 4.40
2283 5615 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2284 5616 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2285 5617 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2286 5618 8.217799 TGTTACTCCCTCCATTCCAAAATATAG 58.782 37.037 0.00 0.00 0.00 1.31
2287 5619 8.108378 TGTTACTCCCTCCATTCCAAAATATA 57.892 34.615 0.00 0.00 0.00 0.86
2288 5620 6.980577 TGTTACTCCCTCCATTCCAAAATAT 58.019 36.000 0.00 0.00 0.00 1.28
2289 5621 6.395780 TGTTACTCCCTCCATTCCAAAATA 57.604 37.500 0.00 0.00 0.00 1.40
2290 5622 5.269554 TGTTACTCCCTCCATTCCAAAAT 57.730 39.130 0.00 0.00 0.00 1.82
2291 5623 4.733077 TGTTACTCCCTCCATTCCAAAA 57.267 40.909 0.00 0.00 0.00 2.44
2292 5624 4.044065 ACATGTTACTCCCTCCATTCCAAA 59.956 41.667 0.00 0.00 0.00 3.28
2293 5625 3.591527 ACATGTTACTCCCTCCATTCCAA 59.408 43.478 0.00 0.00 0.00 3.53
2294 5626 3.189606 ACATGTTACTCCCTCCATTCCA 58.810 45.455 0.00 0.00 0.00 3.53
2295 5627 3.933861 ACATGTTACTCCCTCCATTCC 57.066 47.619 0.00 0.00 0.00 3.01
2296 5628 4.816925 GCTAACATGTTACTCCCTCCATTC 59.183 45.833 14.35 0.00 0.00 2.67
2297 5629 4.385310 GGCTAACATGTTACTCCCTCCATT 60.385 45.833 14.35 0.00 0.00 3.16
2298 5630 3.136626 GGCTAACATGTTACTCCCTCCAT 59.863 47.826 14.35 0.00 0.00 3.41
2299 5631 2.504175 GGCTAACATGTTACTCCCTCCA 59.496 50.000 14.35 0.00 0.00 3.86
2300 5632 2.772515 AGGCTAACATGTTACTCCCTCC 59.227 50.000 14.35 8.61 0.00 4.30
2301 5633 4.489306 AAGGCTAACATGTTACTCCCTC 57.511 45.455 19.98 7.25 0.00 4.30
2302 5634 4.929146 AAAGGCTAACATGTTACTCCCT 57.071 40.909 14.35 15.63 0.00 4.20
2303 5635 5.710567 AGAAAAAGGCTAACATGTTACTCCC 59.289 40.000 14.35 13.86 0.00 4.30
2304 5636 6.819397 AGAAAAAGGCTAACATGTTACTCC 57.181 37.500 14.35 16.62 0.00 3.85
2307 5639 9.961265 ACTAAAAGAAAAAGGCTAACATGTTAC 57.039 29.630 14.35 11.00 0.00 2.50
2540 5877 6.040616 AGTGACTAGTGCTACAAAGTAACACT 59.959 38.462 15.08 15.08 43.60 3.55
2580 5917 7.294676 TCATTATCTGTTTCAACTCACATCG 57.705 36.000 0.00 0.00 0.00 3.84
2682 6019 2.862541 TGGCATACAAGACAAGCAAGT 58.137 42.857 0.00 0.00 0.00 3.16
2992 6329 8.049117 TGAATAAGTAAGAGTGCAGAATCCAAT 58.951 33.333 0.00 0.00 0.00 3.16
3072 6409 5.308825 AGTCCCAACTGAAAAGTACTGATG 58.691 41.667 0.00 0.00 33.32 3.07
3094 6431 4.759693 AGAAGTGAGCATAGACCGATAGAG 59.240 45.833 0.00 0.00 39.76 2.43
3095 6432 4.720046 AGAAGTGAGCATAGACCGATAGA 58.280 43.478 0.00 0.00 39.76 1.98
3401 6753 5.851720 TGCCTTTTCAGCATTTTATCAACA 58.148 33.333 0.00 0.00 34.69 3.33
3402 6754 5.349543 CCTGCCTTTTCAGCATTTTATCAAC 59.650 40.000 0.00 0.00 40.04 3.18
3524 6877 5.143376 CCTGCAGGTCAGAAATGAAAATT 57.857 39.130 25.53 0.00 45.72 1.82
3721 7075 3.814268 CCCTGCCGCGGTTCAATG 61.814 66.667 28.70 10.58 0.00 2.82
3807 7162 4.287552 ACAAGGGTGTTCGTATCTCCTAT 58.712 43.478 0.00 0.00 32.58 2.57
3834 7189 1.227102 CCCCGGAGATGCATTTGGA 59.773 57.895 0.73 0.00 0.00 3.53
3893 7248 2.919602 ACAAGATCAATGGGTAGGTGGT 59.080 45.455 0.00 0.00 0.00 4.16
3928 7284 2.423577 GGTTACAGCCATTTCGAGTGT 58.576 47.619 0.00 0.00 0.00 3.55
3941 7297 0.033504 AGCACAGGTGACGGTTACAG 59.966 55.000 3.10 0.00 36.26 2.74
3993 7349 1.901833 GGTTTTGGCACCATCAAGGAT 59.098 47.619 0.00 0.00 41.22 3.24
4002 7358 0.404426 AGGTAGAGGGTTTTGGCACC 59.596 55.000 0.00 0.00 35.88 5.01
4023 7379 0.917533 TCAGCTCCTACTACGGGTCT 59.082 55.000 0.00 0.00 0.00 3.85
4026 7382 1.677052 GACTTCAGCTCCTACTACGGG 59.323 57.143 0.00 0.00 0.00 5.28
4049 7405 4.724399 TCAGGGTGCTTTCTATTTGTTCA 58.276 39.130 0.00 0.00 0.00 3.18
4129 7485 2.158784 AGGTAAGCCTCTCGACTACGAT 60.159 50.000 0.00 0.00 42.67 3.73
4133 7489 2.421670 CCTCAGGTAAGCCTCTCGACTA 60.422 54.545 0.00 0.00 44.97 2.59
4191 7547 1.134610 CGCCGGGATTACCTTGTAAGT 60.135 52.381 2.18 0.00 36.97 2.24
4238 7594 3.726517 CCGGCGGTGAAGCAGTTG 61.727 66.667 19.97 0.00 39.27 3.16
4293 7649 5.011023 CACATCTGGTGCCAGTAGTATATCA 59.989 44.000 16.85 0.00 43.96 2.15
4364 7720 4.501229 GGCTCACATATCTCCAGTCTTGAG 60.501 50.000 0.00 0.00 33.78 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.