AutoCloner

Multiple sequence alignment - TraesCS1B01G277300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G277300	chr1B	100.000	3772	0	0	1	3772	484890356	484886585	0.000000e+00	6966.0
1	TraesCS1B01G277300	chr1D	96.540	2746	71	10	1	2735	362322984	362320252	0.000000e+00	4523.0
2	TraesCS1B01G277300	chr1D	90.706	538	30	13	2741	3267	362320200	362319672	0.000000e+00	699.0
3	TraesCS1B01G277300	chr1D	83.088	136	20	3	3326	3458	202276036	202276171	1.840000e-23	121.0
4	TraesCS1B01G277300	chr1A	90.344	2620	177	34	122	2725	461778872	461776313	0.000000e+00	3367.0
5	TraesCS1B01G277300	chr1A	85.588	451	36	15	2741	3181	461776232	461775801	2.670000e-121	446.0
6	TraesCS1B01G277300	chr5A	87.879	1617	114	34	480	2080	437211021	437212571	0.000000e+00	1825.0
7	TraesCS1B01G277300	chr5A	85.475	358	36	9	98	449	437210674	437211021	3.580000e-95	359.0
8	TraesCS1B01G277300	chr3D	88.706	487	40	11	98	581	19852894	19852420	7.020000e-162	580.0
9	TraesCS1B01G277300	chr3D	85.271	129	17	1	3325	3451	118273073	118272945	8.500000e-27	132.0
10	TraesCS1B01G277300	chr2B	93.863	277	10	4	3503	3772	197992791	197993067	9.750000e-111	411.0
11	TraesCS1B01G277300	chr2B	92.913	127	7	1	3330	3454	197992414	197992540	2.310000e-42	183.0
12	TraesCS1B01G277300	chr6B	93.502	277	10	2	3503	3772	666090321	666090046	4.540000e-109	405.0
13	TraesCS1B01G277300	chr6B	90.625	128	10	1	3329	3454	666090720	666090593	6.480000e-38	169.0
14	TraesCS1B01G277300	chr6B	96.364	55	2	0	3275	3329	666090815	666090761	1.440000e-14	91.6
15	TraesCS1B01G277300	chr7B	91.336	277	17	4	3503	3772	122623947	122624223	4.600000e-99	372.0
16	TraesCS1B01G277300	chr7B	83.471	121	18	1	3326	3444	700382856	700382976	1.110000e-20	111.0
17	TraesCS1B01G277300	chr7B	94.828	58	3	0	3272	3329	720942654	720942711	1.440000e-14	91.6
18	TraesCS1B01G277300	chr6A	89.855	276	19	5	3506	3772	457094235	457093960	2.790000e-91	346.0
19	TraesCS1B01G277300	chr6A	88.889	117	11	1	3337	3451	457094594	457094478	3.930000e-30	143.0
20	TraesCS1B01G277300	chr3B	89.247	279	21	5	3503	3772	719422857	719423135	1.300000e-89	340.0
21	TraesCS1B01G277300	chr3B	85.600	125	16	1	3329	3451	610313712	610313588	3.060000e-26	130.0
22	TraesCS1B01G277300	chr3B	96.552	58	1	1	3272	3329	378769952	378769896	1.120000e-15	95.3
23	TraesCS1B01G277300	chr3B	98.113	53	1	0	3277	3329	26536464	26536412	4.010000e-15	93.5
24	TraesCS1B01G277300	chr3B	94.828	58	3	0	3272	3329	47696260	47696317	1.440000e-14	91.6
25	TraesCS1B01G277300	chr3B	94.828	58	3	0	3272	3329	47701397	47701454	1.440000e-14	91.6
26	TraesCS1B01G277300	chr3B	94.828	58	3	0	3272	3329	47764118	47764175	1.440000e-14	91.6
27	TraesCS1B01G277300	chr3B	94.828	58	3	0	3272	3329	47769257	47769314	1.440000e-14	91.6
28	TraesCS1B01G277300	chr2D	88.889	279	22	4	3503	3772	74518556	74518834	6.040000e-88	335.0
29	TraesCS1B01G277300	chr2D	88.489	278	23	5	3503	3771	9184770	9185047	1.010000e-85	327.0
30	TraesCS1B01G277300	chr2D	87.814	279	25	5	3503	3772	31398114	31397836	6.080000e-83	318.0
31	TraesCS1B01G277300	chr4A	88.172	279	23	6	3503	3772	154317895	154318172	1.310000e-84	324.0
32	TraesCS1B01G277300	chr6D	90.625	96	7	1	3358	3451	445174529	445174624	3.960000e-25	126.0
33	TraesCS1B01G277300	chr4B	88.889	99	8	2	3356	3451	183824028	183823930	6.620000e-23	119.0
34	TraesCS1B01G277300	chrUn	98.182	55	1	0	3275	3329	259648129	259648075	3.100000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G277300	chr1B	484886585	484890356	3771	True	6966.000000	6966	100.000	1	3772	1	chr1B.!!$R1	3771
1	TraesCS1B01G277300	chr1D	362319672	362322984	3312	True	2611.000000	4523	93.623	1	3267	2	chr1D.!!$R1	3266
2	TraesCS1B01G277300	chr1A	461775801	461778872	3071	True	1906.500000	3367	87.966	122	3181	2	chr1A.!!$R1	3059
3	TraesCS1B01G277300	chr5A	437210674	437212571	1897	False	1092.000000	1825	86.677	98	2080	2	chr5A.!!$F1	1982
4	TraesCS1B01G277300	chr2B	197992414	197993067	653	False	297.000000	411	93.388	3330	3772	2	chr2B.!!$F1	442
5	TraesCS1B01G277300	chr6B	666090046	666090815	769	True	221.866667	405	93.497	3275	3772	3	chr6B.!!$R1	497
6	TraesCS1B01G277300	chr6A	457093960	457094594	634	True	244.500000	346	89.372	3337	3772	2	chr6A.!!$R1	435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
590	636	2.023673	TGTTGCTTGAGTCTTTGGTGG	58.976	47.619	0.00	0.00	4.61	F
1576	1642	0.108585	TGGTGTCTGCTGGTTTCTCC	59.891	55.000	0.00	0.00	3.71	F
2399	2471	1.406903	ATTTCCCTGCTAGCAATGGC	58.593	50.000	19.86	41.61	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2167	2234	1.065199	CAGCAAGCCAATACCTCTGGA	60.065	52.381	0.0	35.85	3.86	R
2667	2739	0.322816	GGCTGCATTGGTGGAAGAGA	60.323	55.000	0.5	0.00	3.10	R
3341	3532	0.404040	GGGGATGTGTGGTTTGAGGA	59.596	55.000	0.0	0.00	3.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	6.454795	TGTATGATCCTTTTTGCAGTTTTCC	58.545	36.000	0.00	0.00	0.00	3.13
137	140	4.634443	GCCACGTTGTAGGTTAGATTCATT	59.366	41.667	0.00	0.00	0.00	2.57
138	141	5.220605	GCCACGTTGTAGGTTAGATTCATTC	60.221	44.000	0.00	0.00	0.00	2.67
139	142	5.872617	CCACGTTGTAGGTTAGATTCATTCA	59.127	40.000	0.00	0.00	0.00	2.57
140	143	6.183360	CCACGTTGTAGGTTAGATTCATTCAC	60.183	42.308	0.00	0.00	0.00	3.18
168	174	6.072728	TGTTAATGTGGTATTTCACTGTGAGC	60.073	38.462	10.77	0.15	38.40	4.26
173	179	3.070878	TGGTATTTCACTGTGAGCTGTGA	59.929	43.478	10.77	0.00	46.84	3.58
178	184	2.279741	TCACTGTGAGCTGTGAACAAC	58.720	47.619	6.36	0.00	45.99	3.32
193	199	6.727569	GTGAACAACGTAAAATTCACTTCC	57.272	37.500	19.08	2.31	44.83	3.46
260	268	4.089361	GGATGGGAAGATTCACCTTGTTT	58.911	43.478	0.00	0.00	0.00	2.83
337	347	8.884124	AAGTTTTTCCCTTCTGATGATGATTA	57.116	30.769	0.00	0.00	0.00	1.75
343	353	9.565090	TTTCCCTTCTGATGATGATTACTAATG	57.435	33.333	0.00	0.00	0.00	1.90
346	356	8.373981	CCCTTCTGATGATGATTACTAATGTCT	58.626	37.037	0.00	0.00	0.00	3.41
363	373	5.796424	ATGTCTTGCAGGTTTTTGATCTT	57.204	34.783	0.00	0.00	0.00	2.40
590	636	2.023673	TGTTGCTTGAGTCTTTGGTGG	58.976	47.619	0.00	0.00	0.00	4.61
729	776	6.220930	TCAGAATAGTTGTTTAACGTGAGCT	58.779	36.000	0.00	0.00	41.71	4.09
1206	1265	3.689161	TCTTGATGTAAGAATTGCACCCG	59.311	43.478	0.00	0.00	45.30	5.28
1266	1325	6.649557	GCTTCCACTTTAGTTGAGTTTAGCTA	59.350	38.462	0.00	0.00	0.00	3.32
1576	1642	0.108585	TGGTGTCTGCTGGTTTCTCC	59.891	55.000	0.00	0.00	0.00	3.71
1627	1693	9.869844	TGTTTTTGTTTGTTTCACTTTATGTTG	57.130	25.926	0.00	0.00	0.00	3.33
1990	2057	2.092429	TCCACAGGTTGAAAGTTCTGCT	60.092	45.455	0.00	0.00	0.00	4.24
2088	2155	3.006859	TGTTCTGATGAGGTCAATGACGT	59.993	43.478	8.43	8.43	36.14	4.34
2155	2222	2.691409	TGGATGATTCTCCGAACCAC	57.309	50.000	0.00	0.00	38.21	4.16
2352	2424	3.737559	ATGACCAATTGGCAGGACTTA	57.262	42.857	24.79	0.70	39.32	2.24
2396	2468	4.098501	GCTGTAAATTTCCCTGCTAGCAAT	59.901	41.667	19.86	5.91	0.00	3.56
2399	2471	1.406903	ATTTCCCTGCTAGCAATGGC	58.593	50.000	19.86	0.00	41.61	4.40
2667	2739	3.476552	TCAACTTTCGAAGCAAGTGGAT	58.523	40.909	1.87	0.00	34.59	3.41
2684	2756	2.295885	GGATCTCTTCCACCAATGCAG	58.704	52.381	0.00	0.00	44.74	4.41
2725	2797	2.507484	TGACATGCCTTCTGTTTCCAG	58.493	47.619	0.00	0.00	40.25	3.86
2726	2798	2.106338	TGACATGCCTTCTGTTTCCAGA	59.894	45.455	0.00	0.00	45.95	3.86
2735	2807	3.777106	TCTGTTTCCAGACTGCTGAAT	57.223	42.857	0.00	0.00	45.17	2.57
2736	2808	3.405831	TCTGTTTCCAGACTGCTGAATG	58.594	45.455	0.00	0.00	45.17	2.67
2737	2809	3.071457	TCTGTTTCCAGACTGCTGAATGA	59.929	43.478	0.00	0.00	45.17	2.57
2738	2810	4.008330	CTGTTTCCAGACTGCTGAATGAT	58.992	43.478	0.00	0.00	45.17	2.45
2739	2811	3.754850	TGTTTCCAGACTGCTGAATGATG	59.245	43.478	0.00	0.00	45.17	3.07
2767	2904	1.955778	CTTTGTGGTCATTGGTGCTGA	59.044	47.619	0.00	0.00	0.00	4.26
2769	2906	2.291209	TGTGGTCATTGGTGCTGAAT	57.709	45.000	0.00	0.00	0.00	2.57
2832	2970	1.813092	CGGCTCTTGATGGATCTTGGG	60.813	57.143	0.00	0.00	0.00	4.12
2861	2999	1.645034	CTGCTGTAGATGGTCCAACG	58.355	55.000	0.00	0.00	0.00	4.10
2989	3128	3.664107	TGCTTTATCGCAGAGAAACTGT	58.336	40.909	0.00	0.00	43.16	3.55
3049	3189	0.317160	CTGCAGTCCACCGTAGTTCA	59.683	55.000	5.25	0.00	0.00	3.18
3058	3200	6.475727	CAGTCCACCGTAGTTCATTGTAATAG	59.524	42.308	0.00	0.00	0.00	1.73
3061	3203	6.321945	TCCACCGTAGTTCATTGTAATAGCTA	59.678	38.462	0.00	0.00	0.00	3.32
3084	3226	3.525537	CATGTTAGATGCCGAGTTGTCT	58.474	45.455	0.00	0.00	0.00	3.41
3136	3281	8.200792	AGTCGCATCTTCTATCTATTTTCTGTT	58.799	33.333	0.00	0.00	0.00	3.16
3200	3348	2.975266	TGTAATCGTGCCAATACCGTT	58.025	42.857	0.00	0.00	0.00	4.44
3202	3350	4.502016	TGTAATCGTGCCAATACCGTTTA	58.498	39.130	0.00	0.00	0.00	2.01
3204	3352	4.545823	AATCGTGCCAATACCGTTTATG	57.454	40.909	0.00	0.00	0.00	1.90
3206	3354	3.336468	TCGTGCCAATACCGTTTATGTT	58.664	40.909	0.00	0.00	0.00	2.71
3209	3357	4.918583	CGTGCCAATACCGTTTATGTTTTT	59.081	37.500	0.00	0.00	0.00	1.94
3231	3379	4.428294	TTTTTGATGCAATGTTTCCCCA	57.572	36.364	0.00	0.00	0.00	4.96
3232	3380	4.428294	TTTTGATGCAATGTTTCCCCAA	57.572	36.364	0.00	0.00	0.00	4.12
3236	3384	5.752036	TGATGCAATGTTTCCCCAATTTA	57.248	34.783	0.00	0.00	0.00	1.40
3237	3385	5.732633	TGATGCAATGTTTCCCCAATTTAG	58.267	37.500	0.00	0.00	0.00	1.85
3297	3447	1.534729	GCCTTGTTTGGTAGGAGTGG	58.465	55.000	0.00	0.00	33.13	4.00
3346	3537	4.722526	TTCAAACCTCAAATCCTCCTCA	57.277	40.909	0.00	0.00	0.00	3.86
3348	3539	5.060427	TCAAACCTCAAATCCTCCTCAAA	57.940	39.130	0.00	0.00	0.00	2.69
3539	3959	5.571784	ACATTGTTCATGTGCAATCTAGG	57.428	39.130	12.23	6.55	45.12	3.02
3540	3960	5.012239	ACATTGTTCATGTGCAATCTAGGT	58.988	37.500	12.23	7.00	45.12	3.08
3541	3961	5.106038	ACATTGTTCATGTGCAATCTAGGTG	60.106	40.000	12.23	6.87	45.12	4.00
3582	4009	5.376625	TGTAAAAGCTCATCCAGAAACACT	58.623	37.500	0.00	0.00	0.00	3.55
3681	4108	5.519183	TCCAATGATTTTCAGGAGAGGAA	57.481	39.130	0.00	0.00	0.00	3.36
3719	4146	1.343789	CAGGCAGTCTCATCGATGGAT	59.656	52.381	24.61	6.20	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	9.586435	AAAAACTACAGGATCTTTCAACAAAAG	57.414	29.630	0.00	0.00	44.89	2.27
100	103	1.073923	ACGTGGCTTTGAGGAGGAAAT	59.926	47.619	0.00	0.00	0.00	2.17
137	140	7.001674	AGTGAAATACCACATTAACAAGGTGA	58.998	34.615	5.34	0.00	45.40	4.02
138	141	7.083858	CAGTGAAATACCACATTAACAAGGTG	58.916	38.462	5.13	0.00	42.44	4.00
139	142	6.775629	ACAGTGAAATACCACATTAACAAGGT	59.224	34.615	0.00	0.00	39.42	3.50
140	143	7.040755	TCACAGTGAAATACCACATTAACAAGG	60.041	37.037	0.00	0.00	39.42	3.61
285	293	8.581057	AACAGCAGAAGAATATACAGAATACG	57.419	34.615	0.00	0.00	0.00	3.06
313	323	8.112183	AGTAATCATCATCAGAAGGGAAAAACT	58.888	33.333	0.00	0.00	0.00	2.66
337	347	6.491403	AGATCAAAAACCTGCAAGACATTAGT	59.509	34.615	0.00	0.00	34.07	2.24
343	353	6.017109	TGACTAAGATCAAAAACCTGCAAGAC	60.017	38.462	0.00	0.00	34.07	3.01
346	356	5.827797	AGTGACTAAGATCAAAAACCTGCAA	59.172	36.000	0.00	0.00	0.00	4.08
363	373	6.816136	TGACTTCAAAAGACATGAGTGACTA	58.184	36.000	0.00	0.00	30.21	2.59
590	636	2.225255	GCAAGACTCAAGGAAAGCAGTC	59.775	50.000	0.00	0.00	36.32	3.51
729	776	2.297315	CAGTGTGAGCAGAGTAGGACAA	59.703	50.000	0.00	0.00	0.00	3.18
931	985	5.008415	AGAGACACAACAAGAAATGCTTCAG	59.992	40.000	0.00	0.00	33.60	3.02
944	998	4.832248	AGAAGAACACAAGAGACACAACA	58.168	39.130	0.00	0.00	0.00	3.33
1183	1242	4.336433	CGGGTGCAATTCTTACATCAAGAT	59.664	41.667	0.00	0.00	42.88	2.40
1278	1337	2.292292	GCACGGAAACATACAAGGTTGT	59.708	45.455	0.24	0.24	44.86	3.32
1966	2033	4.136796	CAGAACTTTCAACCTGTGGATCA	58.863	43.478	0.00	0.00	0.00	2.92
2088	2155	3.454719	TTCCATCAATTTCAGGAGGCA	57.545	42.857	0.00	0.00	0.00	4.75
2155	2222	3.022607	ACCTCTGGAAAAACTACGTCG	57.977	47.619	0.00	0.00	0.00	5.12
2167	2234	1.065199	CAGCAAGCCAATACCTCTGGA	60.065	52.381	0.00	0.00	35.85	3.86
2320	2392	2.680312	TTGGTCATAGAGCTCAGCAC	57.320	50.000	17.77	6.53	0.00	4.40
2352	2424	3.303938	CAGACATATCTCCTGACTGGGT	58.696	50.000	0.00	0.00	34.28	4.51
2667	2739	0.322816	GGCTGCATTGGTGGAAGAGA	60.323	55.000	0.50	0.00	0.00	3.10
2684	2756	0.869730	CAAAAGTGCTTGGCATTGGC	59.130	50.000	2.73	2.73	41.91	4.52
2725	2797	4.815308	AGATAACAGCATCATTCAGCAGTC	59.185	41.667	0.00	0.00	29.82	3.51
2726	2798	4.778579	AGATAACAGCATCATTCAGCAGT	58.221	39.130	0.00	0.00	31.48	4.40
2727	2799	5.752892	AAGATAACAGCATCATTCAGCAG	57.247	39.130	0.00	0.00	0.00	4.24
2728	2800	5.416639	ACAAAGATAACAGCATCATTCAGCA	59.583	36.000	0.00	0.00	0.00	4.41
2731	2803	5.711506	ACCACAAAGATAACAGCATCATTCA	59.288	36.000	0.00	0.00	0.00	2.57
2732	2804	6.127925	TGACCACAAAGATAACAGCATCATTC	60.128	38.462	0.00	0.00	0.00	2.67
2733	2805	5.711506	TGACCACAAAGATAACAGCATCATT	59.288	36.000	0.00	0.00	0.00	2.57
2734	2806	5.255687	TGACCACAAAGATAACAGCATCAT	58.744	37.500	0.00	0.00	0.00	2.45
2735	2807	4.650734	TGACCACAAAGATAACAGCATCA	58.349	39.130	0.00	0.00	0.00	3.07
2736	2808	5.824904	ATGACCACAAAGATAACAGCATC	57.175	39.130	0.00	0.00	0.00	3.91
2737	2809	5.105635	CCAATGACCACAAAGATAACAGCAT	60.106	40.000	0.00	0.00	0.00	3.79
2738	2810	4.218200	CCAATGACCACAAAGATAACAGCA	59.782	41.667	0.00	0.00	0.00	4.41
2739	2811	4.218417	ACCAATGACCACAAAGATAACAGC	59.782	41.667	0.00	0.00	0.00	4.40
2767	2904	0.813184	CCAGAAACGGCAGCATCATT	59.187	50.000	0.00	0.00	0.00	2.57
2769	2906	0.537143	AACCAGAAACGGCAGCATCA	60.537	50.000	0.00	0.00	0.00	3.07
2812	2950	1.590932	CCAAGATCCATCAAGAGCCG	58.409	55.000	0.00	0.00	0.00	5.52
2832	2970	0.685097	TCTACAGCAGGGACCAACAC	59.315	55.000	0.00	0.00	0.00	3.32
2861	2999	4.500205	CCATGCCATGATACAAACACCATC	60.500	45.833	6.18	0.00	0.00	3.51
2989	3128	3.960102	ACATCTTCCAAACCAGCAGAAAA	59.040	39.130	0.00	0.00	0.00	2.29
3049	3189	7.607991	GGCATCTAACATGGTAGCTATTACAAT	59.392	37.037	13.26	0.00	33.73	2.71
3058	3200	2.224066	ACTCGGCATCTAACATGGTAGC	60.224	50.000	13.26	2.28	0.00	3.58
3061	3203	2.027192	ACAACTCGGCATCTAACATGGT	60.027	45.455	0.00	0.00	0.00	3.55
3102	3244	6.908825	AGATAGAAGATGCGACTTAAGCTAG	58.091	40.000	1.29	0.00	35.28	3.42
3140	3285	9.607988	TGACGATGGTTCAAATACATTACTATT	57.392	29.630	0.00	0.00	0.00	1.73
3141	3286	9.778741	ATGACGATGGTTCAAATACATTACTAT	57.221	29.630	0.00	0.00	0.00	2.12
3174	3321	6.261381	ACGGTATTGGCACGATTACAATAATT	59.739	34.615	2.05	0.00	38.40	1.40
3212	3360	4.637387	ATTGGGGAAACATTGCATCAAA	57.363	36.364	0.00	0.00	0.00	2.69
3214	3362	4.637387	AAATTGGGGAAACATTGCATCA	57.363	36.364	0.00	0.00	0.00	3.07
3217	3365	5.306678	AGAACTAAATTGGGGAAACATTGCA	59.693	36.000	0.00	0.00	0.00	4.08
3258	3408	2.593026	CCTTAAGGCACCCAAGAACAA	58.407	47.619	9.00	0.00	0.00	2.83
3271	3421	3.089284	CCTACCAAACAAGGCCTTAAGG	58.911	50.000	20.00	17.81	38.53	2.69
3272	3422	4.010349	CTCCTACCAAACAAGGCCTTAAG	58.990	47.826	20.00	9.74	32.55	1.85
3273	3423	3.396611	ACTCCTACCAAACAAGGCCTTAA	59.603	43.478	20.00	0.00	32.55	1.85
3283	3433	4.906618	TCTCAAATCCACTCCTACCAAAC	58.093	43.478	0.00	0.00	0.00	2.93
3297	3447	4.006319	CTCCTCACCAAACCTCTCAAATC	58.994	47.826	0.00	0.00	0.00	2.17
3341	3532	0.404040	GGGGATGTGTGGTTTGAGGA	59.596	55.000	0.00	0.00	0.00	3.71
3346	3537	0.476771	ACGAAGGGGATGTGTGGTTT	59.523	50.000	0.00	0.00	0.00	3.27
3348	3539	0.611714	GTACGAAGGGGATGTGTGGT	59.388	55.000	0.00	0.00	0.00	4.16
3534	3954	4.530553	TGACAGTAAATCAAGGCACCTAGA	59.469	41.667	0.00	0.00	0.00	2.43
3535	3955	4.832248	TGACAGTAAATCAAGGCACCTAG	58.168	43.478	0.00	0.00	0.00	3.02
3536	3956	4.901197	TGACAGTAAATCAAGGCACCTA	57.099	40.909	0.00	0.00	0.00	3.08
3537	3957	3.788227	TGACAGTAAATCAAGGCACCT	57.212	42.857	0.00	0.00	0.00	4.00
3538	3958	4.218417	ACATTGACAGTAAATCAAGGCACC	59.782	41.667	0.00	0.00	40.61	5.01
3539	3959	5.376854	ACATTGACAGTAAATCAAGGCAC	57.623	39.130	0.00	0.00	40.61	5.01
3540	3960	7.517614	TTTACATTGACAGTAAATCAAGGCA	57.482	32.000	0.00	0.00	40.61	4.75
3541	3961	7.062255	GCTTTTACATTGACAGTAAATCAAGGC	59.938	37.037	0.00	0.00	40.61	4.35
3582	4009	6.928492	GGGTTTTCATGCTGACAGAAATTAAA	59.072	34.615	6.65	0.78	32.00	1.52
3681	4108	3.350250	CCTCCATGGCCATCCCTT	58.650	61.111	17.61	0.00	0.00	3.95
3719	4146	4.435518	GCTCGATTTGAATAGTTCGTTGCA	60.436	41.667	0.00	0.00	34.79	4.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.