Multiple sequence alignment - TraesCS1B01G268100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G268100 chr1B 100.000 3239 0 0 1 3239 470967072 470963834 0.000000e+00 5982.0
1 TraesCS1B01G268100 chr1D 91.448 1754 92 23 659 2370 349472900 349471163 0.000000e+00 2355.0
2 TraesCS1B01G268100 chr1D 81.622 789 129 10 1456 2236 349444427 349443647 9.800000e-180 640.0
3 TraesCS1B01G268100 chr1D 88.101 395 32 6 1001 1395 349444819 349444440 3.810000e-124 455.0
4 TraesCS1B01G268100 chr1A 93.094 1535 88 10 902 2419 449807287 449805754 0.000000e+00 2231.0
5 TraesCS1B01G268100 chr1A 82.219 793 126 9 1456 2242 449754728 449753945 0.000000e+00 669.0
6 TraesCS1B01G268100 chr1A 86.847 517 68 0 1 517 436229407 436229923 2.170000e-161 579.0
7 TraesCS1B01G268100 chr1A 87.848 395 33 7 1001 1395 449755120 449754741 1.770000e-122 449.0
8 TraesCS1B01G268100 chr1A 83.146 356 38 10 550 898 449807672 449807332 4.060000e-79 305.0
9 TraesCS1B01G268100 chr1A 92.500 160 10 1 2633 2790 449805705 449805546 9.040000e-56 228.0
10 TraesCS1B01G268100 chrUn 79.902 1020 164 27 1456 2445 7179605 7178597 0.000000e+00 710.0
11 TraesCS1B01G268100 chrUn 86.329 395 39 9 1001 1395 7179997 7179618 1.800000e-112 416.0
12 TraesCS1B01G268100 chrUn 78.977 528 89 18 11 523 325096134 325095614 1.110000e-89 340.0
13 TraesCS1B01G268100 chrUn 78.927 522 89 17 11 517 340805838 340806353 5.180000e-88 335.0
14 TraesCS1B01G268100 chr3A 84.733 524 77 3 1 523 703208460 703207939 3.700000e-144 521.0
15 TraesCS1B01G268100 chr5D 84.690 516 79 0 1 516 226683335 226683850 1.720000e-142 516.0
16 TraesCS1B01G268100 chr4B 84.231 520 75 7 1 517 168004780 168005295 1.740000e-137 499.0
17 TraesCS1B01G268100 chr4B 80.224 268 40 11 2787 3047 528199660 528199921 4.270000e-44 189.0
18 TraesCS1B01G268100 chr4B 87.342 79 10 0 2527 2605 9070850 9070928 1.240000e-14 91.6
19 TraesCS1B01G268100 chr7B 81.285 529 85 13 1 519 74822145 74822669 1.800000e-112 416.0
20 TraesCS1B01G268100 chr7D 78.927 522 89 17 11 517 3222344 3221829 5.180000e-88 335.0
21 TraesCS1B01G268100 chr7D 80.727 275 40 11 2787 3054 136641673 136641405 5.480000e-48 202.0
22 TraesCS1B01G268100 chr7D 84.906 159 24 0 359 517 578054474 578054316 9.300000e-36 161.0
23 TraesCS1B01G268100 chr2D 78.695 521 95 15 1 517 642312374 642312882 1.860000e-87 333.0
24 TraesCS1B01G268100 chr2D 82.609 184 27 5 2869 3051 498778527 498778348 1.200000e-34 158.0
25 TraesCS1B01G268100 chr2D 78.113 265 38 15 2528 2790 607813708 607813954 2.010000e-32 150.0
26 TraesCS1B01G268100 chr2D 76.404 267 41 16 2528 2790 607842527 607842775 1.220000e-24 124.0
27 TraesCS1B01G268100 chr2B 78.378 259 39 12 2527 2782 380262686 380262442 5.600000e-33 152.0
28 TraesCS1B01G268100 chr3D 92.982 57 2 2 3087 3143 547617188 547617134 7.450000e-12 82.4
29 TraesCS1B01G268100 chr7A 86.957 69 5 4 2788 2854 116619809 116619875 1.250000e-09 75.0
30 TraesCS1B01G268100 chr6D 76.978 139 26 5 2867 3004 371682597 371682464 1.250000e-09 75.0
31 TraesCS1B01G268100 chr5B 80.435 92 9 3 1311 1393 331320949 331321040 9.700000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G268100 chr1B 470963834 470967072 3238 True 5982.000000 5982 100.0000 1 3239 1 chr1B.!!$R1 3238
1 TraesCS1B01G268100 chr1D 349471163 349472900 1737 True 2355.000000 2355 91.4480 659 2370 1 chr1D.!!$R1 1711
2 TraesCS1B01G268100 chr1D 349443647 349444819 1172 True 547.500000 640 84.8615 1001 2236 2 chr1D.!!$R2 1235
3 TraesCS1B01G268100 chr1A 449805546 449807672 2126 True 921.333333 2231 89.5800 550 2790 3 chr1A.!!$R2 2240
4 TraesCS1B01G268100 chr1A 436229407 436229923 516 False 579.000000 579 86.8470 1 517 1 chr1A.!!$F1 516
5 TraesCS1B01G268100 chr1A 449753945 449755120 1175 True 559.000000 669 85.0335 1001 2242 2 chr1A.!!$R1 1241
6 TraesCS1B01G268100 chrUn 7178597 7179997 1400 True 563.000000 710 83.1155 1001 2445 2 chrUn.!!$R2 1444
7 TraesCS1B01G268100 chrUn 325095614 325096134 520 True 340.000000 340 78.9770 11 523 1 chrUn.!!$R1 512
8 TraesCS1B01G268100 chrUn 340805838 340806353 515 False 335.000000 335 78.9270 11 517 1 chrUn.!!$F1 506
9 TraesCS1B01G268100 chr3A 703207939 703208460 521 True 521.000000 521 84.7330 1 523 1 chr3A.!!$R1 522
10 TraesCS1B01G268100 chr5D 226683335 226683850 515 False 516.000000 516 84.6900 1 516 1 chr5D.!!$F1 515
11 TraesCS1B01G268100 chr4B 168004780 168005295 515 False 499.000000 499 84.2310 1 517 1 chr4B.!!$F2 516
12 TraesCS1B01G268100 chr7B 74822145 74822669 524 False 416.000000 416 81.2850 1 519 1 chr7B.!!$F1 518
13 TraesCS1B01G268100 chr7D 3221829 3222344 515 True 335.000000 335 78.9270 11 517 1 chr7D.!!$R1 506
14 TraesCS1B01G268100 chr2D 642312374 642312882 508 False 333.000000 333 78.6950 1 517 1 chr2D.!!$F3 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 631 0.169672 CATAGCCTGTGTTGCACTGC 59.83 55.0 0.0 0.0 35.11 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 2668 0.668535 GCCCAAAACAGTGTCCAGTC 59.331 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.326522 TGAATGGCCAGGCTAGGAGA 60.327 55.000 13.05 0.00 0.00 3.71
90 91 2.615747 GGCTAGGAGACTGTTTTGGACC 60.616 54.545 0.00 0.00 43.88 4.46
128 129 1.902508 CTGGGCTCTTTGGACTACTCA 59.097 52.381 0.00 0.00 0.00 3.41
135 136 5.057149 GCTCTTTGGACTACTCAGAACAAA 58.943 41.667 0.00 0.00 33.35 2.83
236 237 7.937700 AATTATTGACTAAGGAGGAGGATCA 57.062 36.000 0.00 0.00 36.25 2.92
267 268 2.290577 GGAGAGGCTGATCACCAAAGTT 60.291 50.000 14.31 0.00 30.96 2.66
272 273 1.882352 GCTGATCACCAAAGTTCGGGT 60.882 52.381 0.00 0.00 38.10 5.28
293 294 4.563374 GGTGTTTGCCAATTTGCTATCCTT 60.563 41.667 2.90 0.00 0.00 3.36
298 299 2.765699 GCCAATTTGCTATCCTTCCCAA 59.234 45.455 0.00 0.00 0.00 4.12
309 310 1.209504 TCCTTCCCAACCGATGATGTC 59.790 52.381 0.00 0.00 0.00 3.06
325 326 1.501169 TGTCTCGTCGTAGTTGTCGA 58.499 50.000 0.00 0.00 34.91 4.20
337 338 4.147653 CGTAGTTGTCGATTCTTTTGTCGT 59.852 41.667 0.00 0.00 38.85 4.34
402 403 3.548014 CGTGCCACCTTAAAACTCTTGTG 60.548 47.826 0.00 0.00 0.00 3.33
434 449 3.054728 TCTGGTTTGGTTGTGAGACTTGA 60.055 43.478 0.00 0.00 0.00 3.02
497 516 5.049612 GGCTTTATCTATAAAGTCGGGCAAC 60.050 44.000 18.85 4.87 46.78 4.17
539 558 6.385649 ACAAAATATGTTTGACGTTGTCCT 57.614 33.333 13.71 0.00 40.06 3.85
540 559 6.435428 ACAAAATATGTTTGACGTTGTCCTC 58.565 36.000 13.71 0.00 40.06 3.71
541 560 6.038825 ACAAAATATGTTTGACGTTGTCCTCA 59.961 34.615 13.71 0.00 40.06 3.86
542 561 6.627395 AAATATGTTTGACGTTGTCCTCAA 57.373 33.333 0.00 0.00 0.00 3.02
564 583 0.529378 GAAAATGGCTGGTCCTGCAG 59.471 55.000 21.01 6.78 35.26 4.41
566 585 2.793317 AAATGGCTGGTCCTGCAGGG 62.793 60.000 32.23 17.23 35.41 4.45
604 623 1.511305 CGACGTCCATAGCCTGTGT 59.489 57.895 10.58 0.00 0.00 3.72
606 625 1.359848 GACGTCCATAGCCTGTGTTG 58.640 55.000 3.51 0.00 0.00 3.33
612 631 0.169672 CATAGCCTGTGTTGCACTGC 59.830 55.000 0.00 0.00 35.11 4.40
633 652 0.874390 AGCCACACAAATACTGCACG 59.126 50.000 0.00 0.00 0.00 5.34
655 674 7.253420 GCACGAAATAGTAATTCATGCAACTTG 60.253 37.037 12.82 0.00 31.93 3.16
656 675 7.750458 CACGAAATAGTAATTCATGCAACTTGT 59.250 33.333 0.00 0.00 0.00 3.16
657 676 7.750458 ACGAAATAGTAATTCATGCAACTTGTG 59.250 33.333 0.00 0.00 0.00 3.33
671 690 5.272167 CAACTTGTGCATAGCAAAAATGG 57.728 39.130 0.00 0.00 41.47 3.16
675 694 5.466393 ACTTGTGCATAGCAAAAATGGAAAC 59.534 36.000 0.00 0.00 41.47 2.78
676 695 3.986572 TGTGCATAGCAAAAATGGAAACG 59.013 39.130 0.00 0.00 41.47 3.60
717 742 1.965414 TTCCCTGGCCTCAACATCTA 58.035 50.000 3.32 0.00 0.00 1.98
718 743 2.196742 TCCCTGGCCTCAACATCTAT 57.803 50.000 3.32 0.00 0.00 1.98
734 760 3.627395 TCTATCCGTTGGCTTGTTGAT 57.373 42.857 0.00 0.00 0.00 2.57
735 761 3.270027 TCTATCCGTTGGCTTGTTGATG 58.730 45.455 0.00 0.00 0.00 3.07
736 762 2.198827 ATCCGTTGGCTTGTTGATGA 57.801 45.000 0.00 0.00 0.00 2.92
737 763 1.234821 TCCGTTGGCTTGTTGATGAC 58.765 50.000 0.00 0.00 0.00 3.06
738 764 0.950836 CCGTTGGCTTGTTGATGACA 59.049 50.000 0.00 0.00 36.19 3.58
739 765 1.541147 CCGTTGGCTTGTTGATGACAT 59.459 47.619 0.00 0.00 38.26 3.06
740 766 2.587956 CGTTGGCTTGTTGATGACATG 58.412 47.619 0.00 0.00 38.26 3.21
741 767 2.669113 CGTTGGCTTGTTGATGACATGG 60.669 50.000 0.00 0.00 38.26 3.66
742 768 2.557924 GTTGGCTTGTTGATGACATGGA 59.442 45.455 0.00 0.00 38.26 3.41
743 769 2.161855 TGGCTTGTTGATGACATGGAC 58.838 47.619 0.00 0.00 38.26 4.02
744 770 1.131126 GGCTTGTTGATGACATGGACG 59.869 52.381 0.00 0.00 38.26 4.79
745 771 1.806542 GCTTGTTGATGACATGGACGT 59.193 47.619 0.00 0.00 38.26 4.34
746 772 2.413239 GCTTGTTGATGACATGGACGTG 60.413 50.000 0.00 0.00 38.26 4.49
747 773 1.155889 TGTTGATGACATGGACGTGC 58.844 50.000 0.00 0.00 32.00 5.34
748 774 1.155889 GTTGATGACATGGACGTGCA 58.844 50.000 13.59 13.59 0.00 4.57
749 775 1.535028 GTTGATGACATGGACGTGCAA 59.465 47.619 15.51 0.00 0.00 4.08
750 776 1.441738 TGATGACATGGACGTGCAAG 58.558 50.000 15.51 12.99 0.00 4.01
751 777 0.729116 GATGACATGGACGTGCAAGG 59.271 55.000 15.51 12.18 0.00 3.61
752 778 0.324614 ATGACATGGACGTGCAAGGA 59.675 50.000 15.51 0.90 0.00 3.36
753 779 0.320683 TGACATGGACGTGCAAGGAG 60.321 55.000 15.51 7.22 0.00 3.69
754 780 1.639298 GACATGGACGTGCAAGGAGC 61.639 60.000 15.51 0.00 45.96 4.70
755 781 2.045926 ATGGACGTGCAAGGAGCC 60.046 61.111 15.51 3.18 44.83 4.70
756 782 2.894257 ATGGACGTGCAAGGAGCCA 61.894 57.895 15.51 11.96 44.83 4.75
757 783 2.281484 GGACGTGCAAGGAGCCAA 60.281 61.111 0.63 0.00 44.83 4.52
758 784 2.328099 GGACGTGCAAGGAGCCAAG 61.328 63.158 0.63 0.00 44.83 3.61
759 785 2.281761 ACGTGCAAGGAGCCAAGG 60.282 61.111 4.26 0.00 44.83 3.61
760 786 2.032528 CGTGCAAGGAGCCAAGGA 59.967 61.111 0.00 0.00 44.83 3.36
761 787 2.328099 CGTGCAAGGAGCCAAGGAC 61.328 63.158 0.00 0.00 44.83 3.85
762 788 1.073897 GTGCAAGGAGCCAAGGACT 59.926 57.895 0.00 0.00 44.83 3.85
763 789 1.073722 TGCAAGGAGCCAAGGACTG 59.926 57.895 0.00 0.00 44.83 3.51
764 790 2.338785 GCAAGGAGCCAAGGACTGC 61.339 63.158 0.00 0.00 37.23 4.40
765 791 2.037136 CAAGGAGCCAAGGACTGCG 61.037 63.158 0.00 0.00 0.00 5.18
766 792 3.259633 AAGGAGCCAAGGACTGCGG 62.260 63.158 0.00 0.00 0.00 5.69
767 793 4.785453 GGAGCCAAGGACTGCGGG 62.785 72.222 0.00 0.00 0.00 6.13
768 794 4.021925 GAGCCAAGGACTGCGGGT 62.022 66.667 0.00 0.00 0.00 5.28
769 795 4.335647 AGCCAAGGACTGCGGGTG 62.336 66.667 0.00 0.00 0.00 4.61
810 858 1.677217 GGGTGCTCGAATCTTTCAGCT 60.677 52.381 10.67 0.00 35.92 4.24
964 1053 3.656045 TCGTCACTCGTCAGCGCA 61.656 61.111 11.47 0.00 40.80 6.09
998 1089 2.122954 ACTCCCCTTCCCTTCGCT 59.877 61.111 0.00 0.00 0.00 4.93
1082 1182 4.816984 AGAGGCCGGACCGACGAT 62.817 66.667 17.49 0.00 46.52 3.73
1266 1366 2.431942 GGCGACTACCACACCGTG 60.432 66.667 0.00 0.00 0.00 4.94
1368 1468 2.340443 GGATCGTGGGAGATCGCC 59.660 66.667 7.00 7.00 45.90 5.54
1432 1532 2.752238 AGAGCTGGCGCGACTACT 60.752 61.111 15.80 10.90 42.32 2.57
1433 1533 2.278271 GAGCTGGCGCGACTACTC 60.278 66.667 15.80 16.57 42.32 2.59
1495 1595 1.451567 CTCGCCGGACTCTACCAGA 60.452 63.158 5.05 0.00 0.00 3.86
1497 1597 1.451567 CGCCGGACTCTACCAGAGA 60.452 63.158 5.05 0.00 45.07 3.10
1527 1627 0.753262 CGGAGGATCTGGACGGAATT 59.247 55.000 0.00 0.00 38.01 2.17
1552 1652 0.605319 CCTTGGCGTGTTCCTGCTTA 60.605 55.000 0.00 0.00 0.00 3.09
1602 1702 1.263356 CGTCCAACTTCAGGGTCCTA 58.737 55.000 0.00 0.00 0.00 2.94
2047 2153 1.205893 AGCACTTTTTCCGGCAACAAA 59.794 42.857 0.00 0.00 0.00 2.83
2143 2249 4.339530 AGCTTGATACAATGCGAGTAGAGA 59.660 41.667 0.00 0.00 0.00 3.10
2175 2281 1.067776 AGAAACAAGTACGCCGGAGAG 60.068 52.381 13.83 0.52 0.00 3.20
2205 2311 4.992740 AAGTTGCCATGGCCGCCA 62.993 61.111 33.44 16.17 41.09 5.69
2229 2335 1.228228 GGCTGATCATGGCAGGGAA 59.772 57.895 15.26 0.00 34.00 3.97
2299 2432 4.731313 TCATAGCAGAGAGGAGGTGATA 57.269 45.455 0.00 0.00 0.00 2.15
2314 2450 2.543238 GGTGATAACGTCCCTGATCGTC 60.543 54.545 0.00 0.00 39.39 4.20
2322 2458 3.181489 ACGTCCCTGATCGTCTATCAAAC 60.181 47.826 0.00 0.00 44.05 2.93
2432 2568 0.601311 GTTCTTGCGTGTGCCTCTCT 60.601 55.000 0.00 0.00 41.78 3.10
2434 2570 0.601046 TCTTGCGTGTGCCTCTCTTG 60.601 55.000 0.00 0.00 41.78 3.02
2442 2578 0.980423 GTGCCTCTCTTGGACTCCTT 59.020 55.000 0.00 0.00 0.00 3.36
2445 2581 1.899438 GCCTCTCTTGGACTCCTTCCT 60.899 57.143 0.00 0.00 46.10 3.36
2446 2582 2.107366 CCTCTCTTGGACTCCTTCCTC 58.893 57.143 0.00 0.00 46.10 3.71
2447 2583 2.558575 CCTCTCTTGGACTCCTTCCTCA 60.559 54.545 0.00 0.00 46.10 3.86
2448 2584 3.373830 CTCTCTTGGACTCCTTCCTCAT 58.626 50.000 0.00 0.00 46.10 2.90
2449 2585 3.102972 TCTCTTGGACTCCTTCCTCATG 58.897 50.000 0.00 0.00 46.10 3.07
2450 2586 1.556911 TCTTGGACTCCTTCCTCATGC 59.443 52.381 0.00 0.00 46.10 4.06
2451 2587 1.558756 CTTGGACTCCTTCCTCATGCT 59.441 52.381 0.00 0.00 46.10 3.79
2452 2588 1.198713 TGGACTCCTTCCTCATGCTC 58.801 55.000 0.00 0.00 46.10 4.26
2453 2589 0.467804 GGACTCCTTCCTCATGCTCC 59.532 60.000 0.00 0.00 41.95 4.70
2454 2590 0.467804 GACTCCTTCCTCATGCTCCC 59.532 60.000 0.00 0.00 0.00 4.30
2455 2591 0.985490 ACTCCTTCCTCATGCTCCCC 60.985 60.000 0.00 0.00 0.00 4.81
2456 2592 1.694169 TCCTTCCTCATGCTCCCCC 60.694 63.158 0.00 0.00 0.00 5.40
2473 2609 2.870175 CCCCCGCCATTATATTGAACA 58.130 47.619 0.00 0.00 0.00 3.18
2474 2610 2.819608 CCCCCGCCATTATATTGAACAG 59.180 50.000 0.00 0.00 0.00 3.16
2475 2611 2.228822 CCCCGCCATTATATTGAACAGC 59.771 50.000 0.00 0.00 0.00 4.40
2476 2612 2.095768 CCCGCCATTATATTGAACAGCG 60.096 50.000 0.00 0.00 41.84 5.18
2477 2613 3.187478 CGCCATTATATTGAACAGCGG 57.813 47.619 0.00 0.00 38.73 5.52
2478 2614 2.665519 CGCCATTATATTGAACAGCGGC 60.666 50.000 0.00 0.00 38.73 6.53
2479 2615 2.554032 GCCATTATATTGAACAGCGGCT 59.446 45.455 0.00 0.00 34.17 5.52
2480 2616 3.751175 GCCATTATATTGAACAGCGGCTA 59.249 43.478 0.26 0.00 34.17 3.93
2481 2617 4.215399 GCCATTATATTGAACAGCGGCTAA 59.785 41.667 0.26 0.00 34.17 3.09
2482 2618 5.106157 GCCATTATATTGAACAGCGGCTAAT 60.106 40.000 0.26 1.19 34.17 1.73
2483 2619 6.570378 GCCATTATATTGAACAGCGGCTAATT 60.570 38.462 0.26 0.00 34.17 1.40
2484 2620 7.361713 GCCATTATATTGAACAGCGGCTAATTA 60.362 37.037 0.26 0.00 34.17 1.40
2485 2621 8.177663 CCATTATATTGAACAGCGGCTAATTAG 58.822 37.037 8.20 8.20 0.00 1.73
2486 2622 7.667043 TTATATTGAACAGCGGCTAATTAGG 57.333 36.000 14.28 0.00 0.00 2.69
2487 2623 2.325583 TGAACAGCGGCTAATTAGGG 57.674 50.000 14.28 0.00 0.00 3.53
2488 2624 1.834896 TGAACAGCGGCTAATTAGGGA 59.165 47.619 14.28 0.00 0.00 4.20
2489 2625 2.438021 TGAACAGCGGCTAATTAGGGAT 59.562 45.455 14.28 0.00 0.00 3.85
2490 2626 3.118038 TGAACAGCGGCTAATTAGGGATT 60.118 43.478 14.28 0.00 0.00 3.01
2491 2627 3.577805 ACAGCGGCTAATTAGGGATTT 57.422 42.857 14.28 0.00 0.00 2.17
2492 2628 3.214328 ACAGCGGCTAATTAGGGATTTG 58.786 45.455 14.28 0.00 0.00 2.32
2493 2629 2.554032 CAGCGGCTAATTAGGGATTTGG 59.446 50.000 14.28 0.00 0.00 3.28
2494 2630 2.441750 AGCGGCTAATTAGGGATTTGGA 59.558 45.455 14.28 0.00 0.00 3.53
2495 2631 3.117663 AGCGGCTAATTAGGGATTTGGAA 60.118 43.478 14.28 0.00 0.00 3.53
2496 2632 3.004419 GCGGCTAATTAGGGATTTGGAAC 59.996 47.826 14.28 0.00 0.00 3.62
2497 2633 4.204012 CGGCTAATTAGGGATTTGGAACA 58.796 43.478 14.28 0.00 0.00 3.18
2498 2634 4.275936 CGGCTAATTAGGGATTTGGAACAG 59.724 45.833 14.28 0.00 42.39 3.16
2499 2635 5.445964 GGCTAATTAGGGATTTGGAACAGA 58.554 41.667 14.28 0.00 42.39 3.41
2500 2636 5.891551 GGCTAATTAGGGATTTGGAACAGAA 59.108 40.000 14.28 0.00 42.39 3.02
2501 2637 6.379988 GGCTAATTAGGGATTTGGAACAGAAA 59.620 38.462 14.28 0.00 42.39 2.52
2502 2638 7.093509 GGCTAATTAGGGATTTGGAACAGAAAA 60.094 37.037 14.28 0.00 42.39 2.29
2503 2639 8.478066 GCTAATTAGGGATTTGGAACAGAAAAT 58.522 33.333 14.28 0.00 42.39 1.82
2504 2640 9.807649 CTAATTAGGGATTTGGAACAGAAAATG 57.192 33.333 4.42 0.00 42.39 2.32
2505 2641 7.797121 ATTAGGGATTTGGAACAGAAAATGT 57.203 32.000 0.00 0.00 46.97 2.71
2555 2691 0.755327 GGACACTGTTTTGGGCCAGT 60.755 55.000 6.23 0.00 42.47 4.00
2562 2698 1.611491 TGTTTTGGGCCAGTCGATTTC 59.389 47.619 6.23 0.00 0.00 2.17
2578 2714 4.398044 TCGATTTCTTATTGGGCTGAAACC 59.602 41.667 0.00 0.00 32.32 3.27
2595 2731 2.507407 ACCCATTTCGTATTGCCTGT 57.493 45.000 0.00 0.00 0.00 4.00
2596 2732 2.802719 ACCCATTTCGTATTGCCTGTT 58.197 42.857 0.00 0.00 0.00 3.16
2597 2733 3.161866 ACCCATTTCGTATTGCCTGTTT 58.838 40.909 0.00 0.00 0.00 2.83
2598 2734 4.337145 ACCCATTTCGTATTGCCTGTTTA 58.663 39.130 0.00 0.00 0.00 2.01
2599 2735 4.953579 ACCCATTTCGTATTGCCTGTTTAT 59.046 37.500 0.00 0.00 0.00 1.40
2600 2736 6.123651 ACCCATTTCGTATTGCCTGTTTATA 58.876 36.000 0.00 0.00 0.00 0.98
2601 2737 6.262273 ACCCATTTCGTATTGCCTGTTTATAG 59.738 38.462 0.00 0.00 0.00 1.31
2602 2738 6.293955 CCCATTTCGTATTGCCTGTTTATAGG 60.294 42.308 0.00 0.00 40.95 2.57
2609 2745 3.780624 CCTGTTTATAGGCCGTGCT 57.219 52.632 0.00 0.00 0.00 4.40
2610 2746 1.299541 CCTGTTTATAGGCCGTGCTG 58.700 55.000 0.00 0.00 0.00 4.41
2611 2747 0.657840 CTGTTTATAGGCCGTGCTGC 59.342 55.000 0.00 0.00 0.00 5.25
2619 2755 3.042560 GCCGTGCTGCCTCTTTTT 58.957 55.556 0.00 0.00 0.00 1.94
2693 2831 8.982471 TTATAGGGGTATATTCAGGATGTTGA 57.018 34.615 0.00 0.00 37.40 3.18
2798 2936 7.834881 TGTTTATTCTCTATACTCCATCCGT 57.165 36.000 0.00 0.00 0.00 4.69
2799 2937 8.246430 TGTTTATTCTCTATACTCCATCCGTT 57.754 34.615 0.00 0.00 0.00 4.44
2800 2938 8.701895 TGTTTATTCTCTATACTCCATCCGTTT 58.298 33.333 0.00 0.00 0.00 3.60
2801 2939 9.194271 GTTTATTCTCTATACTCCATCCGTTTC 57.806 37.037 0.00 0.00 0.00 2.78
2802 2940 8.707796 TTATTCTCTATACTCCATCCGTTTCT 57.292 34.615 0.00 0.00 0.00 2.52
2803 2941 7.604657 ATTCTCTATACTCCATCCGTTTCTT 57.395 36.000 0.00 0.00 0.00 2.52
2804 2942 7.419711 TTCTCTATACTCCATCCGTTTCTTT 57.580 36.000 0.00 0.00 0.00 2.52
2805 2943 7.419711 TCTCTATACTCCATCCGTTTCTTTT 57.580 36.000 0.00 0.00 0.00 2.27
2806 2944 7.848128 TCTCTATACTCCATCCGTTTCTTTTT 58.152 34.615 0.00 0.00 0.00 1.94
2807 2945 8.974238 TCTCTATACTCCATCCGTTTCTTTTTA 58.026 33.333 0.00 0.00 0.00 1.52
2808 2946 9.250624 CTCTATACTCCATCCGTTTCTTTTTAG 57.749 37.037 0.00 0.00 0.00 1.85
2809 2947 8.755977 TCTATACTCCATCCGTTTCTTTTTAGT 58.244 33.333 0.00 0.00 0.00 2.24
2810 2948 9.379791 CTATACTCCATCCGTTTCTTTTTAGTT 57.620 33.333 0.00 0.00 0.00 2.24
2811 2949 6.555812 ACTCCATCCGTTTCTTTTTAGTTC 57.444 37.500 0.00 0.00 0.00 3.01
2812 2950 6.059484 ACTCCATCCGTTTCTTTTTAGTTCA 58.941 36.000 0.00 0.00 0.00 3.18
2813 2951 6.017357 ACTCCATCCGTTTCTTTTTAGTTCAC 60.017 38.462 0.00 0.00 0.00 3.18
2814 2952 5.823570 TCCATCCGTTTCTTTTTAGTTCACA 59.176 36.000 0.00 0.00 0.00 3.58
2815 2953 6.488683 TCCATCCGTTTCTTTTTAGTTCACAT 59.511 34.615 0.00 0.00 0.00 3.21
2816 2954 7.662258 TCCATCCGTTTCTTTTTAGTTCACATA 59.338 33.333 0.00 0.00 0.00 2.29
2817 2955 8.458843 CCATCCGTTTCTTTTTAGTTCACATAT 58.541 33.333 0.00 0.00 0.00 1.78
2838 2976 9.757227 ACATATAAGATCTGTCTTAAGTCAAGC 57.243 33.333 0.00 0.00 46.84 4.01
2839 2977 8.910666 CATATAAGATCTGTCTTAAGTCAAGCG 58.089 37.037 0.00 0.00 46.84 4.68
2840 2978 4.792521 AGATCTGTCTTAAGTCAAGCGT 57.207 40.909 1.63 0.00 33.94 5.07
2841 2979 5.899120 AGATCTGTCTTAAGTCAAGCGTA 57.101 39.130 1.63 0.00 33.94 4.42
2842 2980 5.885881 AGATCTGTCTTAAGTCAAGCGTAG 58.114 41.667 1.63 0.00 33.94 3.51
2843 2981 5.416326 AGATCTGTCTTAAGTCAAGCGTAGT 59.584 40.000 1.63 0.00 33.94 2.73
2844 2982 6.598457 AGATCTGTCTTAAGTCAAGCGTAGTA 59.402 38.462 1.63 0.00 33.94 1.82
2845 2983 6.564709 TCTGTCTTAAGTCAAGCGTAGTAA 57.435 37.500 1.63 0.00 33.94 2.24
2846 2984 6.973843 TCTGTCTTAAGTCAAGCGTAGTAAA 58.026 36.000 1.63 0.00 33.94 2.01
2847 2985 7.082602 TCTGTCTTAAGTCAAGCGTAGTAAAG 58.917 38.462 1.63 0.00 33.94 1.85
2848 2986 6.742109 TGTCTTAAGTCAAGCGTAGTAAAGT 58.258 36.000 1.63 0.00 33.94 2.66
2849 2987 7.205297 TGTCTTAAGTCAAGCGTAGTAAAGTT 58.795 34.615 1.63 0.00 33.94 2.66
2850 2988 7.707893 TGTCTTAAGTCAAGCGTAGTAAAGTTT 59.292 33.333 1.63 0.00 33.94 2.66
2851 2989 8.002665 GTCTTAAGTCAAGCGTAGTAAAGTTTG 58.997 37.037 1.63 0.00 33.94 2.93
2852 2990 7.922278 TCTTAAGTCAAGCGTAGTAAAGTTTGA 59.078 33.333 1.63 3.24 35.72 2.69
2855 2993 5.900339 TCAAGCGTAGTAAAGTTTGACTG 57.100 39.130 0.00 0.00 33.73 3.51
2856 2994 5.593968 TCAAGCGTAGTAAAGTTTGACTGA 58.406 37.500 0.00 0.00 33.73 3.41
2857 2995 5.690409 TCAAGCGTAGTAAAGTTTGACTGAG 59.310 40.000 0.00 0.00 33.73 3.35
2858 2996 5.449107 AGCGTAGTAAAGTTTGACTGAGA 57.551 39.130 0.00 0.00 0.00 3.27
2859 2997 6.026947 AGCGTAGTAAAGTTTGACTGAGAT 57.973 37.500 0.00 0.00 0.00 2.75
2860 2998 6.456501 AGCGTAGTAAAGTTTGACTGAGATT 58.543 36.000 0.00 0.00 0.00 2.40
2861 2999 6.366332 AGCGTAGTAAAGTTTGACTGAGATTG 59.634 38.462 0.00 0.00 0.00 2.67
2862 3000 6.145696 GCGTAGTAAAGTTTGACTGAGATTGT 59.854 38.462 0.00 0.00 0.00 2.71
2863 3001 7.307219 GCGTAGTAAAGTTTGACTGAGATTGTT 60.307 37.037 0.00 0.00 0.00 2.83
2864 3002 9.188588 CGTAGTAAAGTTTGACTGAGATTGTTA 57.811 33.333 0.00 0.00 0.00 2.41
2867 3005 9.832445 AGTAAAGTTTGACTGAGATTGTTAGAA 57.168 29.630 0.00 0.00 0.00 2.10
3037 3175 8.814733 TGTTATATGCGAAGTAAAATGAAACG 57.185 30.769 0.00 0.00 0.00 3.60
3038 3176 7.906010 TGTTATATGCGAAGTAAAATGAAACGG 59.094 33.333 0.00 0.00 0.00 4.44
3039 3177 6.671614 ATATGCGAAGTAAAATGAAACGGA 57.328 33.333 0.00 0.00 0.00 4.69
3040 3178 4.398549 TGCGAAGTAAAATGAAACGGAG 57.601 40.909 0.00 0.00 0.00 4.63
3041 3179 3.187637 TGCGAAGTAAAATGAAACGGAGG 59.812 43.478 0.00 0.00 0.00 4.30
3042 3180 3.425758 GCGAAGTAAAATGAAACGGAGGG 60.426 47.826 0.00 0.00 0.00 4.30
3043 3181 3.998341 CGAAGTAAAATGAAACGGAGGGA 59.002 43.478 0.00 0.00 0.00 4.20
3044 3182 4.092968 CGAAGTAAAATGAAACGGAGGGAG 59.907 45.833 0.00 0.00 0.00 4.30
3045 3183 4.635699 AGTAAAATGAAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
3046 3184 5.750352 AGTAAAATGAAACGGAGGGAGTA 57.250 39.130 0.00 0.00 0.00 2.59
3047 3185 5.485620 AGTAAAATGAAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
3048 3186 4.360951 AAAATGAAACGGAGGGAGTACA 57.639 40.909 0.00 0.00 0.00 2.90
3049 3187 4.569719 AAATGAAACGGAGGGAGTACAT 57.430 40.909 0.00 0.00 0.00 2.29
3050 3188 5.687166 AAATGAAACGGAGGGAGTACATA 57.313 39.130 0.00 0.00 0.00 2.29
3051 3189 5.888982 AATGAAACGGAGGGAGTACATAT 57.111 39.130 0.00 0.00 0.00 1.78
3052 3190 5.888982 ATGAAACGGAGGGAGTACATATT 57.111 39.130 0.00 0.00 0.00 1.28
3053 3191 6.989155 ATGAAACGGAGGGAGTACATATTA 57.011 37.500 0.00 0.00 0.00 0.98
3054 3192 6.795144 TGAAACGGAGGGAGTACATATTAA 57.205 37.500 0.00 0.00 0.00 1.40
3055 3193 7.185318 TGAAACGGAGGGAGTACATATTAAA 57.815 36.000 0.00 0.00 0.00 1.52
3056 3194 7.622713 TGAAACGGAGGGAGTACATATTAAAA 58.377 34.615 0.00 0.00 0.00 1.52
3057 3195 8.102047 TGAAACGGAGGGAGTACATATTAAAAA 58.898 33.333 0.00 0.00 0.00 1.94
3058 3196 8.502105 AAACGGAGGGAGTACATATTAAAAAG 57.498 34.615 0.00 0.00 0.00 2.27
3059 3197 7.191593 ACGGAGGGAGTACATATTAAAAAGT 57.808 36.000 0.00 0.00 0.00 2.66
3060 3198 7.046033 ACGGAGGGAGTACATATTAAAAAGTG 58.954 38.462 0.00 0.00 0.00 3.16
3061 3199 6.018180 CGGAGGGAGTACATATTAAAAAGTGC 60.018 42.308 0.00 0.00 0.00 4.40
3062 3200 6.826741 GGAGGGAGTACATATTAAAAAGTGCA 59.173 38.462 0.00 0.00 0.00 4.57
3063 3201 7.338449 GGAGGGAGTACATATTAAAAAGTGCAA 59.662 37.037 0.00 0.00 0.00 4.08
3064 3202 8.823220 AGGGAGTACATATTAAAAAGTGCAAT 57.177 30.769 0.00 0.00 0.00 3.56
3065 3203 8.686334 AGGGAGTACATATTAAAAAGTGCAATG 58.314 33.333 0.00 0.00 0.00 2.82
3066 3204 8.466798 GGGAGTACATATTAAAAAGTGCAATGT 58.533 33.333 0.00 0.00 0.00 2.71
3067 3205 9.855021 GGAGTACATATTAAAAAGTGCAATGTT 57.145 29.630 0.00 0.00 0.00 2.71
3071 3209 7.795859 ACATATTAAAAAGTGCAATGTTGTGC 58.204 30.769 0.00 0.00 45.15 4.57
3081 3219 4.863152 GCAATGTTGTGCAGAAGTTTTT 57.137 36.364 0.00 0.00 44.29 1.94
3129 3267 9.833917 CTTTCTCCTTAAAGGGTAATACTAAGG 57.166 37.037 8.91 8.91 39.92 2.69
3130 3268 7.370905 TCTCCTTAAAGGGTAATACTAAGGC 57.629 40.000 9.89 0.00 38.90 4.35
3131 3269 6.904654 TCTCCTTAAAGGGTAATACTAAGGCA 59.095 38.462 9.89 0.33 38.90 4.75
3132 3270 6.892485 TCCTTAAAGGGTAATACTAAGGCAC 58.108 40.000 9.89 0.00 38.90 5.01
3133 3271 6.675303 TCCTTAAAGGGTAATACTAAGGCACT 59.325 38.462 9.89 0.00 38.90 4.40
3134 3272 7.845800 TCCTTAAAGGGTAATACTAAGGCACTA 59.154 37.037 9.89 0.00 38.90 2.74
3135 3273 8.488668 CCTTAAAGGGTAATACTAAGGCACTAA 58.511 37.037 4.07 0.00 38.49 2.24
3138 3276 8.975663 AAAGGGTAATACTAAGGCACTAATTC 57.024 34.615 0.00 0.00 38.49 2.17
3139 3277 7.685849 AGGGTAATACTAAGGCACTAATTCA 57.314 36.000 0.00 0.00 38.49 2.57
3140 3278 8.276453 AGGGTAATACTAAGGCACTAATTCAT 57.724 34.615 0.00 0.00 38.49 2.57
3141 3279 8.724310 AGGGTAATACTAAGGCACTAATTCATT 58.276 33.333 0.00 0.00 38.49 2.57
3142 3280 9.000486 GGGTAATACTAAGGCACTAATTCATTC 58.000 37.037 0.00 0.00 38.49 2.67
3143 3281 9.780186 GGTAATACTAAGGCACTAATTCATTCT 57.220 33.333 0.00 0.00 38.49 2.40
3146 3284 9.477484 AATACTAAGGCACTAATTCATTCTACG 57.523 33.333 0.00 0.00 38.49 3.51
3147 3285 6.875076 ACTAAGGCACTAATTCATTCTACGT 58.125 36.000 0.00 0.00 38.49 3.57
3148 3286 8.004087 ACTAAGGCACTAATTCATTCTACGTA 57.996 34.615 0.00 0.00 38.49 3.57
3149 3287 8.639761 ACTAAGGCACTAATTCATTCTACGTAT 58.360 33.333 0.00 0.00 38.49 3.06
3150 3288 9.477484 CTAAGGCACTAATTCATTCTACGTATT 57.523 33.333 0.00 0.00 38.49 1.89
3151 3289 8.732746 AAGGCACTAATTCATTCTACGTATTT 57.267 30.769 0.00 0.00 38.49 1.40
3152 3290 9.826574 AAGGCACTAATTCATTCTACGTATTTA 57.173 29.630 0.00 0.00 38.49 1.40
3153 3291 9.998106 AGGCACTAATTCATTCTACGTATTTAT 57.002 29.630 0.00 0.00 36.02 1.40
3193 3331 9.189156 TGTATCATTTTCTTTCTTCCATAAGGG 57.811 33.333 0.00 0.00 33.22 3.95
3194 3332 6.530019 TCATTTTCTTTCTTCCATAAGGGC 57.470 37.500 0.00 0.00 36.21 5.19
3195 3333 6.015918 TCATTTTCTTTCTTCCATAAGGGCA 58.984 36.000 0.00 0.00 36.21 5.36
3196 3334 5.982890 TTTTCTTTCTTCCATAAGGGCAG 57.017 39.130 0.00 0.00 36.21 4.85
3197 3335 3.652057 TCTTTCTTCCATAAGGGCAGG 57.348 47.619 0.00 0.00 36.21 4.85
3198 3336 2.919602 TCTTTCTTCCATAAGGGCAGGT 59.080 45.455 0.00 0.00 36.21 4.00
3199 3337 3.054361 TCTTTCTTCCATAAGGGCAGGTC 60.054 47.826 0.00 0.00 36.21 3.85
3200 3338 1.213296 TCTTCCATAAGGGCAGGTCC 58.787 55.000 0.00 0.00 36.21 4.46
3201 3339 0.179045 CTTCCATAAGGGCAGGTCCG 60.179 60.000 0.00 0.00 36.21 4.79
3202 3340 0.912487 TTCCATAAGGGCAGGTCCGT 60.912 55.000 0.00 0.00 36.21 4.69
3203 3341 0.912487 TCCATAAGGGCAGGTCCGTT 60.912 55.000 0.00 0.00 44.47 4.44
3204 3342 0.463833 CCATAAGGGCAGGTCCGTTC 60.464 60.000 0.00 0.00 41.66 3.95
3205 3343 0.463833 CATAAGGGCAGGTCCGTTCC 60.464 60.000 0.00 0.00 41.66 3.62
3206 3344 1.968050 ATAAGGGCAGGTCCGTTCCG 61.968 60.000 0.00 0.00 41.66 4.30
3217 3355 2.860293 CGTTCCGGACACATGTGC 59.140 61.111 25.68 17.27 0.00 4.57
3218 3356 1.958715 CGTTCCGGACACATGTGCA 60.959 57.895 25.68 1.92 36.05 4.57
3219 3357 1.502990 CGTTCCGGACACATGTGCAA 61.503 55.000 25.68 8.05 36.05 4.08
3220 3358 0.238289 GTTCCGGACACATGTGCAAG 59.762 55.000 25.68 15.62 36.05 4.01
3221 3359 0.888736 TTCCGGACACATGTGCAAGG 60.889 55.000 25.68 23.07 36.05 3.61
3222 3360 1.600636 CCGGACACATGTGCAAGGT 60.601 57.895 25.68 5.61 36.05 3.50
3223 3361 1.575922 CGGACACATGTGCAAGGTG 59.424 57.895 25.68 10.96 36.05 4.00
3225 3363 1.032014 GGACACATGTGCAAGGTGTT 58.968 50.000 25.68 3.17 45.09 3.32
3226 3364 1.408702 GGACACATGTGCAAGGTGTTT 59.591 47.619 25.68 2.37 45.09 2.83
3227 3365 2.462889 GACACATGTGCAAGGTGTTTG 58.537 47.619 25.68 0.00 45.09 2.93
3228 3366 2.098614 ACACATGTGCAAGGTGTTTGA 58.901 42.857 25.68 0.00 42.72 2.69
3229 3367 2.159254 ACACATGTGCAAGGTGTTTGAC 60.159 45.455 25.68 0.00 42.72 3.18
3230 3368 1.408702 ACATGTGCAAGGTGTTTGACC 59.591 47.619 0.00 0.00 46.58 4.02
3238 3376 2.327228 GGTGTTTGACCGAACAGGG 58.673 57.895 3.21 0.00 46.96 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.326522 TCCTAGCCTGGCCATTCAGA 60.327 55.000 16.57 1.06 36.93 3.27
78 79 0.251165 CCATCCCGGTCCAAAACAGT 60.251 55.000 0.00 0.00 0.00 3.55
81 82 1.076014 ACCCATCCCGGTCCAAAAC 59.924 57.895 0.00 0.00 0.00 2.43
90 91 2.503061 CAGAGAGCACCCATCCCG 59.497 66.667 0.00 0.00 0.00 5.14
102 103 0.837691 TCCAAAGAGCCCAGCAGAGA 60.838 55.000 0.00 0.00 0.00 3.10
128 129 8.095169 AGACGTCCTCAATAGTAAATTTGTTCT 58.905 33.333 13.01 0.00 0.00 3.01
135 136 5.661759 AGGGAAGACGTCCTCAATAGTAAAT 59.338 40.000 15.75 0.00 46.92 1.40
149 150 1.002087 CAGGCTTGTTAGGGAAGACGT 59.998 52.381 0.00 0.00 33.26 4.34
204 205 7.037586 TCCTCCTTAGTCAATAATTTCCACTGT 60.038 37.037 0.00 0.00 0.00 3.55
236 237 3.474570 GCCTCTCCAGCCCGTCAT 61.475 66.667 0.00 0.00 0.00 3.06
267 268 0.249657 GCAAATTGGCAAACACCCGA 60.250 50.000 3.01 0.00 0.00 5.14
272 273 4.322650 GGAAGGATAGCAAATTGGCAAACA 60.323 41.667 7.75 0.00 35.83 2.83
275 276 2.765699 GGGAAGGATAGCAAATTGGCAA 59.234 45.455 7.75 0.68 35.83 4.52
293 294 0.459899 CGAGACATCATCGGTTGGGA 59.540 55.000 0.00 0.00 36.54 4.37
298 299 1.598132 CTACGACGAGACATCATCGGT 59.402 52.381 0.00 0.00 44.36 4.69
309 310 3.386613 AGAATCGACAACTACGACGAG 57.613 47.619 0.00 0.00 42.37 4.18
325 326 3.813166 CACCACCTACACGACAAAAGAAT 59.187 43.478 0.00 0.00 0.00 2.40
337 338 4.015406 CGCAGGCCACCACCTACA 62.015 66.667 5.01 0.00 38.26 2.74
390 391 6.980978 CAGAGAGAAGACACACAAGAGTTTTA 59.019 38.462 0.00 0.00 0.00 1.52
402 403 3.477210 ACCAAACCAGAGAGAAGACAC 57.523 47.619 0.00 0.00 0.00 3.67
434 449 5.649782 GATCAACAAAGATCCACACCAAT 57.350 39.130 0.00 0.00 38.75 3.16
459 477 6.328641 AGATAAAGCCATACGAACGAGTAT 57.671 37.500 0.14 0.00 37.78 2.12
533 552 3.318839 CAGCCATTTTCTGTTGAGGACAA 59.681 43.478 0.00 0.00 37.93 3.18
534 553 2.886523 CAGCCATTTTCTGTTGAGGACA 59.113 45.455 0.00 0.00 36.65 4.02
535 554 2.229784 CCAGCCATTTTCTGTTGAGGAC 59.770 50.000 0.00 0.00 0.00 3.85
536 555 2.158475 ACCAGCCATTTTCTGTTGAGGA 60.158 45.455 0.00 0.00 0.00 3.71
537 556 2.229784 GACCAGCCATTTTCTGTTGAGG 59.770 50.000 0.00 0.00 0.00 3.86
538 557 2.229784 GGACCAGCCATTTTCTGTTGAG 59.770 50.000 0.00 0.00 36.34 3.02
539 558 2.158475 AGGACCAGCCATTTTCTGTTGA 60.158 45.455 0.00 0.00 40.02 3.18
540 559 2.029649 CAGGACCAGCCATTTTCTGTTG 60.030 50.000 0.00 0.00 40.02 3.33
541 560 2.242043 CAGGACCAGCCATTTTCTGTT 58.758 47.619 0.00 0.00 40.02 3.16
542 561 1.915141 CAGGACCAGCCATTTTCTGT 58.085 50.000 0.00 0.00 40.02 3.41
543 562 0.529378 GCAGGACCAGCCATTTTCTG 59.471 55.000 0.00 0.00 40.02 3.02
544 563 0.112995 TGCAGGACCAGCCATTTTCT 59.887 50.000 6.39 0.00 40.02 2.52
545 564 0.529378 CTGCAGGACCAGCCATTTTC 59.471 55.000 5.57 0.00 40.02 2.29
546 565 0.901580 CCTGCAGGACCAGCCATTTT 60.902 55.000 29.88 0.00 40.02 1.82
547 566 1.304713 CCTGCAGGACCAGCCATTT 60.305 57.895 29.88 0.00 40.02 2.32
548 567 2.357836 CCTGCAGGACCAGCCATT 59.642 61.111 29.88 0.00 40.02 3.16
590 609 0.804989 GTGCAACACAGGCTATGGAC 59.195 55.000 0.00 0.00 36.32 4.02
595 614 0.465278 TTGCAGTGCAACACAGGCTA 60.465 50.000 26.36 0.81 43.99 3.93
604 623 1.602327 TTGTGTGGCTTGCAGTGCAA 61.602 50.000 27.93 27.93 46.80 4.08
606 625 0.249573 ATTTGTGTGGCTTGCAGTGC 60.250 50.000 8.58 8.58 0.00 4.40
612 631 2.664916 GTGCAGTATTTGTGTGGCTTG 58.335 47.619 0.00 0.00 0.00 4.01
616 635 3.617540 TTTCGTGCAGTATTTGTGTGG 57.382 42.857 0.00 0.00 0.00 4.17
655 674 4.233789 TCGTTTCCATTTTTGCTATGCAC 58.766 39.130 0.00 0.00 38.71 4.57
656 675 4.511617 TCGTTTCCATTTTTGCTATGCA 57.488 36.364 0.00 0.00 36.47 3.96
657 676 5.837586 TTTCGTTTCCATTTTTGCTATGC 57.162 34.783 0.00 0.00 0.00 3.14
682 701 2.713708 AGGGAAAAAGCAGAGTCCTCTT 59.286 45.455 0.00 0.00 37.98 2.85
693 712 0.318441 GTTGAGGCCAGGGAAAAAGC 59.682 55.000 5.01 0.00 0.00 3.51
717 742 1.812571 GTCATCAACAAGCCAACGGAT 59.187 47.619 0.00 0.00 0.00 4.18
718 743 1.234821 GTCATCAACAAGCCAACGGA 58.765 50.000 0.00 0.00 0.00 4.69
734 760 0.320683 CTCCTTGCACGTCCATGTCA 60.321 55.000 0.00 0.00 0.00 3.58
735 761 1.639298 GCTCCTTGCACGTCCATGTC 61.639 60.000 0.00 0.00 42.31 3.06
736 762 1.672356 GCTCCTTGCACGTCCATGT 60.672 57.895 0.00 0.00 42.31 3.21
737 763 2.401766 GGCTCCTTGCACGTCCATG 61.402 63.158 0.00 0.00 45.15 3.66
738 764 2.045926 GGCTCCTTGCACGTCCAT 60.046 61.111 0.00 0.00 45.15 3.41
739 765 3.113514 TTGGCTCCTTGCACGTCCA 62.114 57.895 0.00 0.00 45.15 4.02
740 766 2.281484 TTGGCTCCTTGCACGTCC 60.281 61.111 0.00 0.00 45.15 4.79
741 767 2.328099 CCTTGGCTCCTTGCACGTC 61.328 63.158 0.00 0.00 45.15 4.34
742 768 2.281761 CCTTGGCTCCTTGCACGT 60.282 61.111 0.00 0.00 45.15 4.49
743 769 2.032528 TCCTTGGCTCCTTGCACG 59.967 61.111 0.00 0.00 45.15 5.34
744 770 1.073897 AGTCCTTGGCTCCTTGCAC 59.926 57.895 0.00 0.00 45.15 4.57
745 771 1.073722 CAGTCCTTGGCTCCTTGCA 59.926 57.895 0.00 0.00 45.15 4.08
746 772 2.338785 GCAGTCCTTGGCTCCTTGC 61.339 63.158 0.00 0.00 41.94 4.01
747 773 2.037136 CGCAGTCCTTGGCTCCTTG 61.037 63.158 0.00 0.00 0.00 3.61
748 774 2.348998 CGCAGTCCTTGGCTCCTT 59.651 61.111 0.00 0.00 0.00 3.36
749 775 3.710722 CCGCAGTCCTTGGCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
750 776 4.785453 CCCGCAGTCCTTGGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
751 777 4.021925 ACCCGCAGTCCTTGGCTC 62.022 66.667 0.00 0.00 0.00 4.70
752 778 4.335647 CACCCGCAGTCCTTGGCT 62.336 66.667 0.00 0.00 0.00 4.75
754 780 4.641645 TGCACCCGCAGTCCTTGG 62.642 66.667 0.00 0.00 45.36 3.61
769 795 1.598130 AGTCCTTGCACGTCCTTGC 60.598 57.895 0.00 0.00 43.31 4.01
770 796 2.238353 CAGTCCTTGCACGTCCTTG 58.762 57.895 0.00 0.00 0.00 3.61
771 797 4.779475 CAGTCCTTGCACGTCCTT 57.221 55.556 0.00 0.00 0.00 3.36
970 1059 2.363147 GGGGAGTGGCGTCTCTCT 60.363 66.667 17.67 0.00 35.47 3.10
998 1089 0.757561 TCCCTCCGATGACGCCATTA 60.758 55.000 0.00 0.00 38.29 1.90
1038 1135 3.706086 TCTTCTTTTTGGCCTTGCTCTTT 59.294 39.130 3.32 0.00 0.00 2.52
1443 1543 2.497792 TAAGGTCGGGGTAGTGGCGA 62.498 60.000 0.00 0.00 0.00 5.54
1480 1580 1.338655 GATTCTCTGGTAGAGTCCGGC 59.661 57.143 0.00 0.00 42.83 6.13
1495 1595 3.962557 CTCCGGCCAGAGGATTCT 58.037 61.111 8.23 0.00 37.13 2.40
2047 2153 1.240641 TTCGCCGCAACAATCATGGT 61.241 50.000 0.00 0.00 0.00 3.55
2143 2249 3.270877 ACTTGTTTCTCTCGTGTTTGCT 58.729 40.909 0.00 0.00 0.00 3.91
2175 2281 2.667199 AACTTGCACGGGTACGCC 60.667 61.111 4.09 0.00 46.04 5.68
2229 2335 2.133520 AGGCATCATCATCACCTCCTT 58.866 47.619 0.00 0.00 0.00 3.36
2299 2432 2.651455 TGATAGACGATCAGGGACGTT 58.349 47.619 0.00 0.00 39.78 3.99
2314 2450 8.512138 ACGGATAACCTTTTGAAAGTTTGATAG 58.488 33.333 0.00 0.00 34.20 2.08
2453 2589 2.819608 CTGTTCAATATAATGGCGGGGG 59.180 50.000 0.00 0.00 0.00 5.40
2454 2590 2.228822 GCTGTTCAATATAATGGCGGGG 59.771 50.000 0.00 0.00 0.00 5.73
2455 2591 2.095768 CGCTGTTCAATATAATGGCGGG 60.096 50.000 0.00 0.00 38.12 6.13
2456 2592 3.187478 CGCTGTTCAATATAATGGCGG 57.813 47.619 0.00 0.00 38.12 6.13
2457 2593 2.665519 GCCGCTGTTCAATATAATGGCG 60.666 50.000 0.00 0.00 40.83 5.69
2458 2594 2.554032 AGCCGCTGTTCAATATAATGGC 59.446 45.455 0.00 0.00 40.22 4.40
2459 2595 5.940192 TTAGCCGCTGTTCAATATAATGG 57.060 39.130 2.16 0.00 0.00 3.16
2460 2596 8.177663 CCTAATTAGCCGCTGTTCAATATAATG 58.822 37.037 6.99 0.00 0.00 1.90
2461 2597 7.336931 CCCTAATTAGCCGCTGTTCAATATAAT 59.663 37.037 6.99 0.00 0.00 1.28
2462 2598 6.653320 CCCTAATTAGCCGCTGTTCAATATAA 59.347 38.462 6.99 0.00 0.00 0.98
2463 2599 6.014070 TCCCTAATTAGCCGCTGTTCAATATA 60.014 38.462 6.99 0.00 0.00 0.86
2464 2600 5.003804 CCCTAATTAGCCGCTGTTCAATAT 58.996 41.667 6.99 0.00 0.00 1.28
2465 2601 4.101898 TCCCTAATTAGCCGCTGTTCAATA 59.898 41.667 6.99 0.00 0.00 1.90
2466 2602 3.118038 TCCCTAATTAGCCGCTGTTCAAT 60.118 43.478 6.99 0.00 0.00 2.57
2467 2603 2.237643 TCCCTAATTAGCCGCTGTTCAA 59.762 45.455 6.99 0.00 0.00 2.69
2468 2604 1.834896 TCCCTAATTAGCCGCTGTTCA 59.165 47.619 6.99 0.00 0.00 3.18
2469 2605 2.614829 TCCCTAATTAGCCGCTGTTC 57.385 50.000 6.99 0.00 0.00 3.18
2470 2606 3.577805 AATCCCTAATTAGCCGCTGTT 57.422 42.857 6.99 0.58 0.00 3.16
2471 2607 3.214328 CAAATCCCTAATTAGCCGCTGT 58.786 45.455 6.99 0.00 0.00 4.40
2472 2608 2.554032 CCAAATCCCTAATTAGCCGCTG 59.446 50.000 6.99 0.88 0.00 5.18
2473 2609 2.441750 TCCAAATCCCTAATTAGCCGCT 59.558 45.455 6.99 0.00 0.00 5.52
2474 2610 2.858745 TCCAAATCCCTAATTAGCCGC 58.141 47.619 6.99 0.00 0.00 6.53
2475 2611 4.204012 TGTTCCAAATCCCTAATTAGCCG 58.796 43.478 6.99 0.00 0.00 5.52
2476 2612 5.445964 TCTGTTCCAAATCCCTAATTAGCC 58.554 41.667 6.99 0.00 0.00 3.93
2477 2613 7.404671 TTTCTGTTCCAAATCCCTAATTAGC 57.595 36.000 6.99 0.00 0.00 3.09
2478 2614 9.807649 CATTTTCTGTTCCAAATCCCTAATTAG 57.192 33.333 5.43 5.43 0.00 1.73
2479 2615 9.320295 ACATTTTCTGTTCCAAATCCCTAATTA 57.680 29.630 0.00 0.00 32.90 1.40
2480 2616 8.206126 ACATTTTCTGTTCCAAATCCCTAATT 57.794 30.769 0.00 0.00 32.90 1.40
2481 2617 7.797121 ACATTTTCTGTTCCAAATCCCTAAT 57.203 32.000 0.00 0.00 32.90 1.73
2482 2618 7.610580 AACATTTTCTGTTCCAAATCCCTAA 57.389 32.000 0.00 0.00 44.99 2.69
2527 2663 4.322349 CCCAAAACAGTGTCCAGTCAAAAA 60.322 41.667 0.00 0.00 0.00 1.94
2528 2664 3.194542 CCCAAAACAGTGTCCAGTCAAAA 59.805 43.478 0.00 0.00 0.00 2.44
2529 2665 2.757868 CCCAAAACAGTGTCCAGTCAAA 59.242 45.455 0.00 0.00 0.00 2.69
2530 2666 2.374184 CCCAAAACAGTGTCCAGTCAA 58.626 47.619 0.00 0.00 0.00 3.18
2531 2667 2.021723 GCCCAAAACAGTGTCCAGTCA 61.022 52.381 0.00 0.00 0.00 3.41
2532 2668 0.668535 GCCCAAAACAGTGTCCAGTC 59.331 55.000 0.00 0.00 0.00 3.51
2533 2669 0.755327 GGCCCAAAACAGTGTCCAGT 60.755 55.000 0.00 0.00 0.00 4.00
2534 2670 0.754957 TGGCCCAAAACAGTGTCCAG 60.755 55.000 0.00 0.00 0.00 3.86
2535 2671 0.754957 CTGGCCCAAAACAGTGTCCA 60.755 55.000 0.00 0.00 0.00 4.02
2536 2672 0.755327 ACTGGCCCAAAACAGTGTCC 60.755 55.000 0.00 0.00 45.54 4.02
2537 2673 2.807247 ACTGGCCCAAAACAGTGTC 58.193 52.632 0.00 0.00 45.54 3.67
2541 2677 1.247567 AATCGACTGGCCCAAAACAG 58.752 50.000 0.00 0.00 40.48 3.16
2542 2678 1.611491 GAAATCGACTGGCCCAAAACA 59.389 47.619 0.00 0.00 0.00 2.83
2543 2679 1.886542 AGAAATCGACTGGCCCAAAAC 59.113 47.619 0.00 0.00 0.00 2.43
2544 2680 2.286365 AGAAATCGACTGGCCCAAAA 57.714 45.000 0.00 0.00 0.00 2.44
2545 2681 2.286365 AAGAAATCGACTGGCCCAAA 57.714 45.000 0.00 0.00 0.00 3.28
2546 2682 3.644966 ATAAGAAATCGACTGGCCCAA 57.355 42.857 0.00 0.00 0.00 4.12
2555 2691 4.398044 GGTTTCAGCCCAATAAGAAATCGA 59.602 41.667 0.00 0.00 33.18 3.59
2578 2714 6.668323 CCTATAAACAGGCAATACGAAATGG 58.332 40.000 0.00 0.00 0.00 3.16
2602 2738 3.042560 AAAAAGAGGCAGCACGGC 58.957 55.556 0.00 0.00 41.61 5.68
2616 2752 8.988064 TGCATACAAAGTTACAAACAGAAAAA 57.012 26.923 0.00 0.00 0.00 1.94
2617 2753 9.593134 AATGCATACAAAGTTACAAACAGAAAA 57.407 25.926 0.00 0.00 0.00 2.29
2618 2754 9.593134 AAATGCATACAAAGTTACAAACAGAAA 57.407 25.926 0.00 0.00 0.00 2.52
2619 2755 9.593134 AAAATGCATACAAAGTTACAAACAGAA 57.407 25.926 0.00 0.00 0.00 3.02
2620 2756 9.593134 AAAAATGCATACAAAGTTACAAACAGA 57.407 25.926 0.00 0.00 0.00 3.41
2661 2797 6.439692 CCTGAATATACCCCTATAAACCGACT 59.560 42.308 0.00 0.00 0.00 4.18
2662 2798 6.438425 TCCTGAATATACCCCTATAAACCGAC 59.562 42.308 0.00 0.00 0.00 4.79
2663 2799 6.564099 TCCTGAATATACCCCTATAAACCGA 58.436 40.000 0.00 0.00 0.00 4.69
2664 2800 6.862469 TCCTGAATATACCCCTATAAACCG 57.138 41.667 0.00 0.00 0.00 4.44
2665 2801 8.159229 ACATCCTGAATATACCCCTATAAACC 57.841 38.462 0.00 0.00 0.00 3.27
2693 2831 7.603963 TGCACGTATACATTTTACACTCATT 57.396 32.000 3.32 0.00 0.00 2.57
2784 2922 8.943909 ACTAAAAAGAAACGGATGGAGTATAG 57.056 34.615 0.00 0.00 0.00 1.31
2786 2924 7.881232 TGAACTAAAAAGAAACGGATGGAGTAT 59.119 33.333 0.00 0.00 0.00 2.12
2790 2928 5.823570 TGTGAACTAAAAAGAAACGGATGGA 59.176 36.000 0.00 0.00 0.00 3.41
2791 2929 6.067263 TGTGAACTAAAAAGAAACGGATGG 57.933 37.500 0.00 0.00 0.00 3.51
2812 2950 9.757227 GCTTGACTTAAGACAGATCTTATATGT 57.243 33.333 10.09 0.00 44.99 2.29
2813 2951 8.910666 CGCTTGACTTAAGACAGATCTTATATG 58.089 37.037 10.09 0.00 44.99 1.78
2814 2952 8.634444 ACGCTTGACTTAAGACAGATCTTATAT 58.366 33.333 10.09 0.00 44.99 0.86
2815 2953 7.997482 ACGCTTGACTTAAGACAGATCTTATA 58.003 34.615 10.09 0.00 44.99 0.98
2816 2954 6.868622 ACGCTTGACTTAAGACAGATCTTAT 58.131 36.000 10.09 0.00 44.99 1.73
2817 2955 6.268825 ACGCTTGACTTAAGACAGATCTTA 57.731 37.500 10.09 0.00 43.70 2.10
2819 2957 4.792521 ACGCTTGACTTAAGACAGATCT 57.207 40.909 10.09 0.00 38.76 2.75
2820 2958 5.642686 ACTACGCTTGACTTAAGACAGATC 58.357 41.667 10.09 0.00 38.76 2.75
2821 2959 5.646577 ACTACGCTTGACTTAAGACAGAT 57.353 39.130 10.09 0.00 38.76 2.90
2822 2960 6.564709 TTACTACGCTTGACTTAAGACAGA 57.435 37.500 10.09 0.20 38.76 3.41
2823 2961 6.862090 ACTTTACTACGCTTGACTTAAGACAG 59.138 38.462 10.09 4.96 38.76 3.51
2824 2962 6.742109 ACTTTACTACGCTTGACTTAAGACA 58.258 36.000 10.09 6.50 38.76 3.41
2825 2963 7.634809 AACTTTACTACGCTTGACTTAAGAC 57.365 36.000 10.09 3.35 38.76 3.01
2826 2964 7.922278 TCAAACTTTACTACGCTTGACTTAAGA 59.078 33.333 10.09 0.00 38.76 2.10
2827 2965 8.002665 GTCAAACTTTACTACGCTTGACTTAAG 58.997 37.037 0.00 0.00 39.54 1.85
2828 2966 7.707893 AGTCAAACTTTACTACGCTTGACTTAA 59.292 33.333 8.96 0.00 46.61 1.85
2829 2967 7.168637 CAGTCAAACTTTACTACGCTTGACTTA 59.831 37.037 11.48 0.00 46.61 2.24
2830 2968 6.018994 CAGTCAAACTTTACTACGCTTGACTT 60.019 38.462 11.48 0.00 46.61 3.01
2831 2969 5.598769 AGTCAAACTTTACTACGCTTGACT 58.401 37.500 8.96 8.96 44.93 3.41
2832 2970 5.461078 TCAGTCAAACTTTACTACGCTTGAC 59.539 40.000 4.92 4.92 41.77 3.18
2833 2971 5.593968 TCAGTCAAACTTTACTACGCTTGA 58.406 37.500 0.00 0.00 0.00 3.02
2834 2972 5.690409 TCTCAGTCAAACTTTACTACGCTTG 59.310 40.000 0.00 0.00 0.00 4.01
2835 2973 5.839621 TCTCAGTCAAACTTTACTACGCTT 58.160 37.500 0.00 0.00 0.00 4.68
2836 2974 5.449107 TCTCAGTCAAACTTTACTACGCT 57.551 39.130 0.00 0.00 0.00 5.07
2837 2975 6.145696 ACAATCTCAGTCAAACTTTACTACGC 59.854 38.462 0.00 0.00 0.00 4.42
2838 2976 7.639162 ACAATCTCAGTCAAACTTTACTACG 57.361 36.000 0.00 0.00 0.00 3.51
2841 2979 9.832445 TTCTAACAATCTCAGTCAAACTTTACT 57.168 29.630 0.00 0.00 0.00 2.24
3011 3149 9.433317 CGTTTCATTTTACTTCGCATATAACAT 57.567 29.630 0.00 0.00 0.00 2.71
3012 3150 7.906010 CCGTTTCATTTTACTTCGCATATAACA 59.094 33.333 0.00 0.00 0.00 2.41
3013 3151 8.117988 TCCGTTTCATTTTACTTCGCATATAAC 58.882 33.333 0.00 0.00 0.00 1.89
3014 3152 8.199176 TCCGTTTCATTTTACTTCGCATATAA 57.801 30.769 0.00 0.00 0.00 0.98
3015 3153 7.042321 CCTCCGTTTCATTTTACTTCGCATATA 60.042 37.037 0.00 0.00 0.00 0.86
3016 3154 6.238374 CCTCCGTTTCATTTTACTTCGCATAT 60.238 38.462 0.00 0.00 0.00 1.78
3017 3155 5.064198 CCTCCGTTTCATTTTACTTCGCATA 59.936 40.000 0.00 0.00 0.00 3.14
3018 3156 4.142687 CCTCCGTTTCATTTTACTTCGCAT 60.143 41.667 0.00 0.00 0.00 4.73
3019 3157 3.187637 CCTCCGTTTCATTTTACTTCGCA 59.812 43.478 0.00 0.00 0.00 5.10
3020 3158 3.425758 CCCTCCGTTTCATTTTACTTCGC 60.426 47.826 0.00 0.00 0.00 4.70
3021 3159 3.998341 TCCCTCCGTTTCATTTTACTTCG 59.002 43.478 0.00 0.00 0.00 3.79
3022 3160 5.001874 ACTCCCTCCGTTTCATTTTACTTC 58.998 41.667 0.00 0.00 0.00 3.01
3023 3161 4.981812 ACTCCCTCCGTTTCATTTTACTT 58.018 39.130 0.00 0.00 0.00 2.24
3024 3162 4.635699 ACTCCCTCCGTTTCATTTTACT 57.364 40.909 0.00 0.00 0.00 2.24
3025 3163 5.240121 TGTACTCCCTCCGTTTCATTTTAC 58.760 41.667 0.00 0.00 0.00 2.01
3026 3164 5.486735 TGTACTCCCTCCGTTTCATTTTA 57.513 39.130 0.00 0.00 0.00 1.52
3027 3165 4.360951 TGTACTCCCTCCGTTTCATTTT 57.639 40.909 0.00 0.00 0.00 1.82
3028 3166 4.569719 ATGTACTCCCTCCGTTTCATTT 57.430 40.909 0.00 0.00 0.00 2.32
3029 3167 5.888982 ATATGTACTCCCTCCGTTTCATT 57.111 39.130 0.00 0.00 0.00 2.57
3030 3168 5.888982 AATATGTACTCCCTCCGTTTCAT 57.111 39.130 0.00 0.00 0.00 2.57
3031 3169 6.795144 TTAATATGTACTCCCTCCGTTTCA 57.205 37.500 0.00 0.00 0.00 2.69
3032 3170 8.496707 TTTTTAATATGTACTCCCTCCGTTTC 57.503 34.615 0.00 0.00 0.00 2.78
3033 3171 8.105197 ACTTTTTAATATGTACTCCCTCCGTTT 58.895 33.333 0.00 0.00 0.00 3.60
3034 3172 7.551617 CACTTTTTAATATGTACTCCCTCCGTT 59.448 37.037 0.00 0.00 0.00 4.44
3035 3173 7.046033 CACTTTTTAATATGTACTCCCTCCGT 58.954 38.462 0.00 0.00 0.00 4.69
3036 3174 6.018180 GCACTTTTTAATATGTACTCCCTCCG 60.018 42.308 0.00 0.00 0.00 4.63
3037 3175 6.826741 TGCACTTTTTAATATGTACTCCCTCC 59.173 38.462 0.00 0.00 0.00 4.30
3038 3176 7.859325 TGCACTTTTTAATATGTACTCCCTC 57.141 36.000 0.00 0.00 0.00 4.30
3039 3177 8.686334 CATTGCACTTTTTAATATGTACTCCCT 58.314 33.333 0.00 0.00 0.00 4.20
3040 3178 8.466798 ACATTGCACTTTTTAATATGTACTCCC 58.533 33.333 0.00 0.00 0.00 4.30
3041 3179 9.855021 AACATTGCACTTTTTAATATGTACTCC 57.145 29.630 0.00 0.00 0.00 3.85
3045 3183 8.920665 GCACAACATTGCACTTTTTAATATGTA 58.079 29.630 0.00 0.00 42.49 2.29
3046 3184 7.795859 GCACAACATTGCACTTTTTAATATGT 58.204 30.769 0.00 0.00 42.49 2.29
3060 3198 4.863152 AAAAACTTCTGCACAACATTGC 57.137 36.364 0.00 0.00 43.31 3.56
3103 3241 9.833917 CCTTAGTATTACCCTTTAAGGAGAAAG 57.166 37.037 13.36 0.00 41.76 2.62
3104 3242 8.270030 GCCTTAGTATTACCCTTTAAGGAGAAA 58.730 37.037 13.36 4.00 41.76 2.52
3105 3243 7.403813 TGCCTTAGTATTACCCTTTAAGGAGAA 59.596 37.037 13.36 6.30 41.76 2.87
3106 3244 6.904654 TGCCTTAGTATTACCCTTTAAGGAGA 59.095 38.462 13.36 0.00 41.76 3.71
3107 3245 6.990939 GTGCCTTAGTATTACCCTTTAAGGAG 59.009 42.308 13.36 5.29 41.76 3.69
3108 3246 6.675303 AGTGCCTTAGTATTACCCTTTAAGGA 59.325 38.462 13.36 0.00 41.76 3.36
3109 3247 6.896883 AGTGCCTTAGTATTACCCTTTAAGG 58.103 40.000 3.57 3.57 42.00 2.69
3113 3251 8.554011 TGAATTAGTGCCTTAGTATTACCCTTT 58.446 33.333 0.00 0.00 0.00 3.11
3114 3252 8.097791 TGAATTAGTGCCTTAGTATTACCCTT 57.902 34.615 0.00 0.00 0.00 3.95
3115 3253 7.685849 TGAATTAGTGCCTTAGTATTACCCT 57.314 36.000 0.00 0.00 0.00 4.34
3116 3254 8.919777 AATGAATTAGTGCCTTAGTATTACCC 57.080 34.615 0.00 0.00 0.00 3.69
3117 3255 9.780186 AGAATGAATTAGTGCCTTAGTATTACC 57.220 33.333 0.00 0.00 0.00 2.85
3120 3258 9.477484 CGTAGAATGAATTAGTGCCTTAGTATT 57.523 33.333 0.00 0.00 0.00 1.89
3121 3259 8.639761 ACGTAGAATGAATTAGTGCCTTAGTAT 58.360 33.333 0.00 0.00 0.00 2.12
3122 3260 8.004087 ACGTAGAATGAATTAGTGCCTTAGTA 57.996 34.615 0.00 0.00 0.00 1.82
3123 3261 6.875076 ACGTAGAATGAATTAGTGCCTTAGT 58.125 36.000 0.00 0.00 0.00 2.24
3124 3262 9.477484 AATACGTAGAATGAATTAGTGCCTTAG 57.523 33.333 0.08 0.00 0.00 2.18
3125 3263 9.826574 AAATACGTAGAATGAATTAGTGCCTTA 57.173 29.630 0.08 0.00 0.00 2.69
3126 3264 8.732746 AAATACGTAGAATGAATTAGTGCCTT 57.267 30.769 0.08 0.00 0.00 4.35
3127 3265 9.998106 ATAAATACGTAGAATGAATTAGTGCCT 57.002 29.630 0.08 0.00 0.00 4.75
3167 3305 9.189156 CCCTTATGGAAGAAAGAAAATGATACA 57.811 33.333 0.00 0.00 34.25 2.29
3168 3306 8.138074 GCCCTTATGGAAGAAAGAAAATGATAC 58.862 37.037 0.00 0.00 34.25 2.24
3169 3307 7.838696 TGCCCTTATGGAAGAAAGAAAATGATA 59.161 33.333 0.00 0.00 34.25 2.15
3170 3308 6.669154 TGCCCTTATGGAAGAAAGAAAATGAT 59.331 34.615 0.00 0.00 34.25 2.45
3171 3309 6.015918 TGCCCTTATGGAAGAAAGAAAATGA 58.984 36.000 0.00 0.00 34.25 2.57
3172 3310 6.284891 TGCCCTTATGGAAGAAAGAAAATG 57.715 37.500 0.00 0.00 34.25 2.32
3173 3311 5.423290 CCTGCCCTTATGGAAGAAAGAAAAT 59.577 40.000 0.00 0.00 43.60 1.82
3174 3312 4.772100 CCTGCCCTTATGGAAGAAAGAAAA 59.228 41.667 0.00 0.00 43.60 2.29
3175 3313 4.202673 ACCTGCCCTTATGGAAGAAAGAAA 60.203 41.667 0.00 0.00 43.60 2.52
3176 3314 3.333680 ACCTGCCCTTATGGAAGAAAGAA 59.666 43.478 0.00 0.00 43.60 2.52
3177 3315 2.919602 ACCTGCCCTTATGGAAGAAAGA 59.080 45.455 0.00 0.00 43.60 2.52
3178 3316 3.282885 GACCTGCCCTTATGGAAGAAAG 58.717 50.000 0.00 0.00 43.60 2.62
3179 3317 2.025321 GGACCTGCCCTTATGGAAGAAA 60.025 50.000 0.00 0.00 43.60 2.52
3180 3318 1.564348 GGACCTGCCCTTATGGAAGAA 59.436 52.381 0.00 0.00 43.60 2.52
3181 3319 1.213296 GGACCTGCCCTTATGGAAGA 58.787 55.000 0.00 0.00 43.60 2.87
3182 3320 0.179045 CGGACCTGCCCTTATGGAAG 60.179 60.000 0.00 0.00 39.95 3.46
3183 3321 0.912487 ACGGACCTGCCCTTATGGAA 60.912 55.000 0.00 0.00 35.39 3.53
3184 3322 0.912487 AACGGACCTGCCCTTATGGA 60.912 55.000 0.00 0.00 35.39 3.41
3185 3323 0.463833 GAACGGACCTGCCCTTATGG 60.464 60.000 0.00 0.00 37.09 2.74
3186 3324 0.463833 GGAACGGACCTGCCCTTATG 60.464 60.000 0.00 0.00 0.00 1.90
3187 3325 1.912971 GGAACGGACCTGCCCTTAT 59.087 57.895 0.00 0.00 0.00 1.73
3188 3326 3.395630 GGAACGGACCTGCCCTTA 58.604 61.111 0.00 0.00 0.00 2.69
3201 3339 0.238289 CTTGCACATGTGTCCGGAAC 59.762 55.000 26.01 7.82 0.00 3.62
3202 3340 0.888736 CCTTGCACATGTGTCCGGAA 60.889 55.000 26.01 7.62 0.00 4.30
3203 3341 1.302431 CCTTGCACATGTGTCCGGA 60.302 57.895 26.01 0.00 0.00 5.14
3204 3342 1.600636 ACCTTGCACATGTGTCCGG 60.601 57.895 26.01 22.80 0.00 5.14
3205 3343 1.165907 ACACCTTGCACATGTGTCCG 61.166 55.000 26.01 14.06 38.83 4.79
3206 3344 1.032014 AACACCTTGCACATGTGTCC 58.968 50.000 26.01 11.73 42.08 4.02
3207 3345 2.098934 TCAAACACCTTGCACATGTGTC 59.901 45.455 26.01 18.27 42.08 3.67
3208 3346 2.098614 TCAAACACCTTGCACATGTGT 58.901 42.857 26.01 8.79 44.63 3.72
3209 3347 2.462889 GTCAAACACCTTGCACATGTG 58.537 47.619 21.83 21.83 34.76 3.21
3210 3348 1.408702 GGTCAAACACCTTGCACATGT 59.591 47.619 0.00 0.00 42.84 3.21
3211 3349 1.600164 CGGTCAAACACCTTGCACATG 60.600 52.381 0.00 0.00 44.21 3.21
3212 3350 0.667993 CGGTCAAACACCTTGCACAT 59.332 50.000 0.00 0.00 44.21 3.21
3213 3351 0.393132 TCGGTCAAACACCTTGCACA 60.393 50.000 0.00 0.00 44.21 4.57
3214 3352 0.736053 TTCGGTCAAACACCTTGCAC 59.264 50.000 0.00 0.00 44.21 4.57
3215 3353 0.736053 GTTCGGTCAAACACCTTGCA 59.264 50.000 0.00 0.00 44.21 4.08
3216 3354 0.736053 TGTTCGGTCAAACACCTTGC 59.264 50.000 0.00 0.00 44.21 4.01
3217 3355 1.333619 CCTGTTCGGTCAAACACCTTG 59.666 52.381 0.00 0.00 44.21 3.61
3218 3356 1.675552 CCTGTTCGGTCAAACACCTT 58.324 50.000 0.00 0.00 44.21 3.50
3219 3357 0.179029 CCCTGTTCGGTCAAACACCT 60.179 55.000 0.00 0.00 44.21 4.00
3220 3358 2.327228 CCCTGTTCGGTCAAACACC 58.673 57.895 0.00 0.00 42.69 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.