Multiple sequence alignment - TraesCS1B01G261500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G261500 chr1B 100.000 4514 0 0 1 4514 459929639 459925126 0.000000e+00 8336.0
1 TraesCS1B01G261500 chr1B 91.566 83 7 0 2847 2929 592125710 592125628 1.030000e-21 115.0
2 TraesCS1B01G261500 chr1B 89.773 88 8 1 2843 2929 143050400 143050313 1.330000e-20 111.0
3 TraesCS1B01G261500 chr1D 93.214 2564 114 28 320 2856 342864774 342862244 0.000000e+00 3716.0
4 TraesCS1B01G261500 chr1D 92.490 1518 87 12 3017 4514 342862248 342860738 0.000000e+00 2146.0
5 TraesCS1B01G261500 chr1D 97.826 92 2 0 2929 3020 1026766 1026857 4.670000e-35 159.0
6 TraesCS1B01G261500 chr1D 93.750 96 6 0 1 96 342864911 342864816 1.310000e-30 145.0
7 TraesCS1B01G261500 chr1D 96.429 84 2 1 2846 2929 1026734 1026816 2.190000e-28 137.0
8 TraesCS1B01G261500 chr1A 90.489 1840 92 38 301 2099 442563911 442562114 0.000000e+00 2351.0
9 TraesCS1B01G261500 chr1A 91.459 1124 48 12 3017 4134 442561333 442560252 0.000000e+00 1500.0
10 TraesCS1B01G261500 chr1A 86.765 816 63 25 2057 2856 442562115 442561329 0.000000e+00 867.0
11 TraesCS1B01G261500 chr1A 92.042 377 22 4 4139 4514 442560183 442559814 1.440000e-144 523.0
12 TraesCS1B01G261500 chr1A 90.909 77 6 1 1 77 442563887 442563812 7.990000e-18 102.0
13 TraesCS1B01G261500 chr2D 95.930 172 3 1 139 306 130727510 130727681 4.450000e-70 276.0
14 TraesCS1B01G261500 chr2D 97.849 93 2 0 2929 3021 138294482 138294390 1.300000e-35 161.0
15 TraesCS1B01G261500 chr2B 96.386 166 2 1 138 299 41181017 41180852 2.070000e-68 270.0
16 TraesCS1B01G261500 chrUn 95.322 171 3 2 139 305 84290551 84290720 2.680000e-67 267.0
17 TraesCS1B01G261500 chrUn 95.322 171 3 2 139 305 226943876 226944045 2.680000e-67 267.0
18 TraesCS1B01G261500 chrUn 93.182 176 7 2 137 307 115400894 115400719 2.080000e-63 254.0
19 TraesCS1B01G261500 chr6B 95.266 169 3 2 135 298 521714696 521714864 3.460000e-66 263.0
20 TraesCS1B01G261500 chr5A 95.210 167 4 1 137 299 585001645 585001811 1.250000e-65 261.0
21 TraesCS1B01G261500 chr7D 94.220 173 5 2 137 304 598525845 598525673 4.480000e-65 259.0
22 TraesCS1B01G261500 chr7D 97.826 92 2 0 2929 3020 457342456 457342547 4.670000e-35 159.0
23 TraesCS1B01G261500 chr5B 92.818 181 7 3 137 311 440017395 440017575 1.610000e-64 257.0
24 TraesCS1B01G261500 chr5B 94.872 78 4 0 2852 2929 382884124 382884201 6.130000e-24 122.0
25 TraesCS1B01G261500 chr5B 94.737 76 4 0 2854 2929 128853132 128853057 7.930000e-23 119.0
26 TraesCS1B01G261500 chr7B 79.545 352 36 20 301 635 486726915 486726583 7.600000e-53 219.0
27 TraesCS1B01G261500 chr6D 96.000 100 3 1 2929 3027 449134013 449134112 1.300000e-35 161.0
28 TraesCS1B01G261500 chr6D 96.739 92 3 0 2929 3020 188888146 188888237 2.170000e-33 154.0
29 TraesCS1B01G261500 chr6D 94.805 77 4 0 2853 2929 449133987 449134063 2.210000e-23 121.0
30 TraesCS1B01G261500 chr3B 97.826 92 2 0 2929 3020 5410209 5410300 4.670000e-35 159.0
31 TraesCS1B01G261500 chr3B 97.802 91 2 0 2931 3021 564169728 564169818 1.680000e-34 158.0
32 TraesCS1B01G261500 chr3B 94.872 78 4 0 2852 2929 5410182 5410259 6.130000e-24 122.0
33 TraesCS1B01G261500 chr5D 96.739 92 3 0 2929 3020 309426763 309426672 2.170000e-33 154.0
34 TraesCS1B01G261500 chr5D 95.062 81 3 1 2850 2929 309426793 309426713 4.740000e-25 126.0
35 TraesCS1B01G261500 chr5D 78.261 115 12 6 2935 3038 179777572 179777684 1.360000e-05 62.1
36 TraesCS1B01G261500 chr4A 96.774 93 2 1 2929 3020 738312114 738312206 2.170000e-33 154.0
37 TraesCS1B01G261500 chr4A 96.104 77 3 0 2853 2929 738312088 738312164 4.740000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G261500 chr1B 459925126 459929639 4513 True 8336.000000 8336 100.000000 1 4514 1 chr1B.!!$R2 4513
1 TraesCS1B01G261500 chr1D 342860738 342864911 4173 True 2002.333333 3716 93.151333 1 4514 3 chr1D.!!$R1 4513
2 TraesCS1B01G261500 chr1A 442559814 442563911 4097 True 1068.600000 2351 90.332800 1 4514 5 chr1A.!!$R1 4513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 180 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.0 0.0 0.0 0.0 4.12 F
1405 1468 0.036671 TCATGTGCTCAGTGCCTCAG 60.037 55.0 0.0 0.0 42.0 3.35 F
2869 2992 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1473 0.034337 GTCAGTAAACCGGGCACTGA 59.966 55.0 23.38 23.38 44.78 3.41 R
2997 3120 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R
4259 4454 0.250234 GCAGTAGCATGGACAGTGGA 59.750 55.0 0.00 0.00 41.58 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 49 3.049912 GGTTGGCGTTCACTCAAAAATC 58.950 45.455 0.00 0.00 0.00 2.17
70 95 3.184541 GCAAATTGCAGAGCACCTTATG 58.815 45.455 13.73 0.00 44.26 1.90
80 105 5.817816 GCAGAGCACCTTATGTTACACTATT 59.182 40.000 0.00 0.00 0.00 1.73
81 106 6.984474 GCAGAGCACCTTATGTTACACTATTA 59.016 38.462 0.00 0.00 0.00 0.98
82 107 7.169982 GCAGAGCACCTTATGTTACACTATTAG 59.830 40.741 0.00 0.00 0.00 1.73
83 108 8.198109 CAGAGCACCTTATGTTACACTATTAGT 58.802 37.037 0.00 0.00 0.00 2.24
118 143 6.183359 GCAGTTTGTGAATGTATAGCAAAACG 60.183 38.462 0.00 0.00 31.99 3.60
140 165 7.425577 ACGTGGTTTCCTTATTTTACACTAC 57.574 36.000 0.00 0.00 0.00 2.73
142 167 7.386025 ACGTGGTTTCCTTATTTTACACTACTC 59.614 37.037 0.00 0.00 0.00 2.59
143 168 7.148523 CGTGGTTTCCTTATTTTACACTACTCC 60.149 40.741 0.00 0.00 0.00 3.85
144 169 7.120285 GTGGTTTCCTTATTTTACACTACTCCC 59.880 40.741 0.00 0.00 0.00 4.30
145 170 7.017850 TGGTTTCCTTATTTTACACTACTCCCT 59.982 37.037 0.00 0.00 0.00 4.20
146 171 7.551974 GGTTTCCTTATTTTACACTACTCCCTC 59.448 40.741 0.00 0.00 0.00 4.30
147 172 6.803366 TCCTTATTTTACACTACTCCCTCC 57.197 41.667 0.00 0.00 0.00 4.30
148 173 5.361857 TCCTTATTTTACACTACTCCCTCCG 59.638 44.000 0.00 0.00 0.00 4.63
149 174 5.128335 CCTTATTTTACACTACTCCCTCCGT 59.872 44.000 0.00 0.00 0.00 4.69
153 178 0.614134 ACACTACTCCCTCCGTTCCC 60.614 60.000 0.00 0.00 0.00 3.97
154 179 0.613853 CACTACTCCCTCCGTTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
155 180 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
156 181 1.272807 CTACTCCCTCCGTTCCCAAA 58.727 55.000 0.00 0.00 0.00 3.28
157 182 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
158 183 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
159 184 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
160 185 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
161 186 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
162 187 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
163 188 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
164 189 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
165 190 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
166 191 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
167 192 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
168 193 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
169 194 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
170 195 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
171 196 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
172 197 7.335924 CCGTTCCCAAATATTTGTCTTTCTAGA 59.664 37.037 23.24 7.17 36.45 2.43
189 214 9.567776 TCTTTCTAGACATTTGAAATGGTTACA 57.432 29.630 20.69 0.70 31.69 2.41
191 216 9.959749 TTTCTAGACATTTGAAATGGTTACAAC 57.040 29.630 20.69 4.78 0.00 3.32
192 217 8.684386 TCTAGACATTTGAAATGGTTACAACA 57.316 30.769 20.69 0.00 0.00 3.33
193 218 9.295825 TCTAGACATTTGAAATGGTTACAACAT 57.704 29.630 20.69 0.00 0.00 2.71
196 221 8.020819 AGACATTTGAAATGGTTACAACATACG 58.979 33.333 20.69 0.00 0.00 3.06
197 222 7.087639 ACATTTGAAATGGTTACAACATACGG 58.912 34.615 20.69 0.00 0.00 4.02
198 223 6.879276 TTTGAAATGGTTACAACATACGGA 57.121 33.333 0.00 0.00 0.00 4.69
199 224 7.455641 TTTGAAATGGTTACAACATACGGAT 57.544 32.000 0.00 0.00 0.00 4.18
200 225 6.429791 TGAAATGGTTACAACATACGGATG 57.570 37.500 5.94 5.94 39.16 3.51
202 227 7.104290 TGAAATGGTTACAACATACGGATGTA 58.896 34.615 15.10 0.00 45.93 2.29
203 228 7.771361 TGAAATGGTTACAACATACGGATGTAT 59.229 33.333 15.10 8.21 45.93 2.29
240 265 4.103365 AGTGTAGATTCACTCTGCTTCG 57.897 45.455 0.00 0.00 44.07 3.79
241 266 3.508012 AGTGTAGATTCACTCTGCTTCGT 59.492 43.478 0.00 0.00 44.07 3.85
242 267 4.700692 AGTGTAGATTCACTCTGCTTCGTA 59.299 41.667 0.00 0.00 44.07 3.43
243 268 5.358442 AGTGTAGATTCACTCTGCTTCGTAT 59.642 40.000 0.00 0.00 44.07 3.06
244 269 5.457148 GTGTAGATTCACTCTGCTTCGTATG 59.543 44.000 0.00 0.00 37.48 2.39
245 270 4.727507 AGATTCACTCTGCTTCGTATGT 57.272 40.909 0.00 0.00 31.12 2.29
246 271 5.836821 AGATTCACTCTGCTTCGTATGTA 57.163 39.130 0.00 0.00 31.12 2.29
247 272 5.826586 AGATTCACTCTGCTTCGTATGTAG 58.173 41.667 0.00 0.00 31.12 2.74
248 273 5.358442 AGATTCACTCTGCTTCGTATGTAGT 59.642 40.000 0.00 0.00 31.12 2.73
249 274 4.617808 TCACTCTGCTTCGTATGTAGTC 57.382 45.455 0.00 0.00 0.00 2.59
250 275 4.007659 TCACTCTGCTTCGTATGTAGTCA 58.992 43.478 0.00 0.00 0.00 3.41
251 276 4.099120 CACTCTGCTTCGTATGTAGTCAC 58.901 47.826 0.00 0.00 0.00 3.67
252 277 4.011023 ACTCTGCTTCGTATGTAGTCACT 58.989 43.478 0.00 0.00 0.00 3.41
253 278 4.459685 ACTCTGCTTCGTATGTAGTCACTT 59.540 41.667 0.00 0.00 0.00 3.16
254 279 4.733850 TCTGCTTCGTATGTAGTCACTTG 58.266 43.478 0.00 0.00 0.00 3.16
255 280 4.217767 TCTGCTTCGTATGTAGTCACTTGT 59.782 41.667 0.00 0.00 0.00 3.16
256 281 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
257 282 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
258 283 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
259 284 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
260 285 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
261 286 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
262 287 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
263 288 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
264 289 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
265 290 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
266 291 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
267 292 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
268 293 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
269 294 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
270 295 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
271 296 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
272 297 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
273 298 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
274 299 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
275 300 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
276 301 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
289 314 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
290 315 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
291 316 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
292 317 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
293 318 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
294 319 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
295 320 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
296 321 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
297 322 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
298 323 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
299 324 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
300 325 8.731591 AATATTTAGGAACGGAGGGAGTATTA 57.268 34.615 0.00 0.00 0.00 0.98
301 326 6.667558 ATTTAGGAACGGAGGGAGTATTAG 57.332 41.667 0.00 0.00 0.00 1.73
302 327 3.684408 AGGAACGGAGGGAGTATTAGT 57.316 47.619 0.00 0.00 0.00 2.24
303 328 3.991683 AGGAACGGAGGGAGTATTAGTT 58.008 45.455 0.00 0.00 0.00 2.24
304 329 4.359996 AGGAACGGAGGGAGTATTAGTTT 58.640 43.478 0.00 0.00 0.00 2.66
305 330 4.161754 AGGAACGGAGGGAGTATTAGTTTG 59.838 45.833 0.00 0.00 0.00 2.93
306 331 4.081254 GGAACGGAGGGAGTATTAGTTTGT 60.081 45.833 0.00 0.00 0.00 2.83
307 332 4.467198 ACGGAGGGAGTATTAGTTTGTG 57.533 45.455 0.00 0.00 0.00 3.33
308 333 4.091549 ACGGAGGGAGTATTAGTTTGTGA 58.908 43.478 0.00 0.00 0.00 3.58
309 334 4.529377 ACGGAGGGAGTATTAGTTTGTGAA 59.471 41.667 0.00 0.00 0.00 3.18
310 335 5.189145 ACGGAGGGAGTATTAGTTTGTGAAT 59.811 40.000 0.00 0.00 0.00 2.57
311 336 5.523916 CGGAGGGAGTATTAGTTTGTGAATG 59.476 44.000 0.00 0.00 0.00 2.67
312 337 6.629515 CGGAGGGAGTATTAGTTTGTGAATGA 60.630 42.308 0.00 0.00 0.00 2.57
313 338 6.539103 GGAGGGAGTATTAGTTTGTGAATGAC 59.461 42.308 0.00 0.00 0.00 3.06
314 339 7.016153 AGGGAGTATTAGTTTGTGAATGACA 57.984 36.000 0.00 0.00 0.00 3.58
354 379 0.895530 TCCACTAAAGACTCTGGGCG 59.104 55.000 0.00 0.00 0.00 6.13
361 386 0.318762 AAGACTCTGGGCGTCAGTTC 59.681 55.000 7.56 6.18 43.76 3.01
401 426 0.492276 AGACACCTAGTGACCCCCTT 59.508 55.000 0.96 0.00 36.96 3.95
468 493 2.035961 GTCGATACATGGCCTGAAGCTA 59.964 50.000 3.32 0.00 43.05 3.32
538 563 0.612732 TATTCCCGACCAGACACCGT 60.613 55.000 0.00 0.00 0.00 4.83
555 580 3.684305 CACCGTAACATTGCATCTGAAGA 59.316 43.478 3.97 0.00 0.00 2.87
563 588 2.975410 TGCATCTGAAGAAAGCAACG 57.025 45.000 7.97 0.00 36.61 4.10
581 606 2.771688 ACGGAGATATTCAAAGGGGGA 58.228 47.619 0.00 0.00 0.00 4.81
679 705 3.712907 GGCGGGTGTGGAAGCCTA 61.713 66.667 0.00 0.00 44.91 3.93
852 878 2.505982 CCATTGGACGGCCGAGAT 59.494 61.111 35.90 16.32 36.79 2.75
1181 1243 1.140134 TCAACCCTAGGGCTGGCTTT 61.140 55.000 28.88 10.64 39.32 3.51
1315 1377 1.302192 CGTCTTCCGCCCCTTCAAA 60.302 57.895 0.00 0.00 0.00 2.69
1403 1466 0.321034 TGTCATGTGCTCAGTGCCTC 60.321 55.000 0.00 0.00 42.00 4.70
1404 1467 0.321034 GTCATGTGCTCAGTGCCTCA 60.321 55.000 0.00 0.00 42.00 3.86
1405 1468 0.036671 TCATGTGCTCAGTGCCTCAG 60.037 55.000 0.00 0.00 42.00 3.35
1406 1469 0.321387 CATGTGCTCAGTGCCTCAGT 60.321 55.000 0.00 0.00 42.00 3.41
1407 1470 0.321387 ATGTGCTCAGTGCCTCAGTG 60.321 55.000 0.00 0.00 42.00 3.66
1408 1471 2.031616 TGCTCAGTGCCTCAGTGC 59.968 61.111 0.00 0.00 42.00 4.40
1409 1472 2.745492 GCTCAGTGCCTCAGTGCC 60.745 66.667 0.00 0.00 35.04 5.01
1410 1473 3.067091 CTCAGTGCCTCAGTGCCT 58.933 61.111 0.00 0.00 35.04 4.75
1411 1474 1.079266 CTCAGTGCCTCAGTGCCTC 60.079 63.158 0.00 0.00 35.04 4.70
1412 1475 1.824224 CTCAGTGCCTCAGTGCCTCA 61.824 60.000 0.00 0.00 35.04 3.86
1440 1503 4.083484 CCGGTTTACTGACTTGGATTGTTC 60.083 45.833 0.00 0.00 0.00 3.18
1553 1616 0.525761 GCTGCTTTGCCAAATCGGTA 59.474 50.000 2.17 0.00 36.97 4.02
1633 1696 0.313672 TCTTGATTTGGTTGTGCCGC 59.686 50.000 0.00 0.00 41.21 6.53
1648 1711 3.470567 CGCGGACTCGACTTGTGC 61.471 66.667 0.00 0.00 39.00 4.57
1656 1719 0.670546 CTCGACTTGTGCCGGTTCAT 60.671 55.000 1.90 0.00 0.00 2.57
1752 1815 1.196808 GGTGATGTGCCAAACTACACG 59.803 52.381 0.00 0.00 39.71 4.49
1934 1999 8.791355 AACTTAGGCTTAAAACACGTTAAATG 57.209 30.769 0.00 0.00 0.00 2.32
1935 2000 6.859508 ACTTAGGCTTAAAACACGTTAAATGC 59.140 34.615 0.00 0.00 0.00 3.56
1949 2014 9.480053 ACACGTTAAATGCTTACTTAGACTAAA 57.520 29.630 0.00 0.00 0.00 1.85
2044 2110 6.817765 TTTGTTTAGAGTTGCATAAGAGGG 57.182 37.500 0.00 0.00 0.00 4.30
2046 2112 5.876357 TGTTTAGAGTTGCATAAGAGGGTT 58.124 37.500 0.00 0.00 0.00 4.11
2089 2155 3.801114 TCAAGGAGATACCACATGTCG 57.199 47.619 0.00 0.00 42.04 4.35
2166 2276 5.123344 AGTTCGTTAAGAGTTGCACAAAAGT 59.877 36.000 0.00 0.00 0.00 2.66
2176 2286 1.202245 TGCACAAAAGTTTGCTCGGTC 60.202 47.619 3.68 0.00 41.79 4.79
2183 2293 1.583054 AGTTTGCTCGGTCTGTTGAC 58.417 50.000 0.00 0.00 42.22 3.18
2184 2294 0.232303 GTTTGCTCGGTCTGTTGACG 59.768 55.000 0.00 0.00 43.79 4.35
2260 2373 8.702163 ACAAGTAGGCATATTTTATTTTGTGC 57.298 30.769 0.00 0.00 0.00 4.57
2271 2384 1.967319 ATTTTGTGCGAGTGAGGTGT 58.033 45.000 0.00 0.00 0.00 4.16
2274 2387 2.029666 GTGCGAGTGAGGTGTGCT 59.970 61.111 0.00 0.00 0.00 4.40
2295 2408 1.604378 GTACCACTGCTGCCTCCAT 59.396 57.895 0.00 0.00 0.00 3.41
2399 2518 5.235516 AGTATCCACTTGTTGGTTTACTCG 58.764 41.667 0.00 0.00 46.97 4.18
2406 2525 6.424509 CCACTTGTTGGTTTACTCGTATTGTA 59.575 38.462 0.00 0.00 41.10 2.41
2451 2570 9.448438 TGTGTGTGCTTGTATTATTATTCTTCT 57.552 29.630 0.00 0.00 0.00 2.85
2464 2584 9.890629 ATTATTATTCTTCTGGCTATAATCGCA 57.109 29.630 0.00 0.00 0.00 5.10
2485 2605 5.005740 GCAGGATCCATGTGCTATATGAAA 58.994 41.667 15.82 0.00 34.23 2.69
2645 2765 1.269257 GGGAGTTGCTTGTTTGTCTGC 60.269 52.381 0.00 0.00 0.00 4.26
2732 2852 6.861055 CGCAACAGAAATTGTAAGTTGGTTAT 59.139 34.615 0.00 0.00 39.73 1.89
2738 2858 9.410556 CAGAAATTGTAAGTTGGTTATCCTTTG 57.589 33.333 0.00 0.00 34.23 2.77
2790 2913 5.105997 GCTCAAGTCTAGAATTTTGTGGCAT 60.106 40.000 1.94 0.00 0.00 4.40
2851 2974 9.428097 CGACTTGATGATCTAATTCCATATGAA 57.572 33.333 3.65 0.00 37.38 2.57
2859 2982 8.816894 TGATCTAATTCCATATGAAGTACTCCC 58.183 37.037 3.65 0.00 36.14 4.30
2860 2983 8.980832 ATCTAATTCCATATGAAGTACTCCCT 57.019 34.615 3.65 0.00 36.14 4.20
2861 2984 8.423906 TCTAATTCCATATGAAGTACTCCCTC 57.576 38.462 3.65 0.00 36.14 4.30
2862 2985 6.441088 AATTCCATATGAAGTACTCCCTCC 57.559 41.667 3.65 0.00 36.14 4.30
2863 2986 3.497332 TCCATATGAAGTACTCCCTCCG 58.503 50.000 3.65 0.00 0.00 4.63
2864 2987 3.117246 TCCATATGAAGTACTCCCTCCGT 60.117 47.826 3.65 0.00 0.00 4.69
2865 2988 3.256136 CCATATGAAGTACTCCCTCCGTC 59.744 52.174 3.65 0.00 0.00 4.79
2866 2989 1.777941 ATGAAGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2867 2990 0.324091 TGAAGTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
2868 2991 0.324091 GAAGTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
2869 2992 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2870 2993 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2871 2994 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2872 2995 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2873 2996 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2874 2997 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
2875 2998 1.838077 CTCCCTCCGTCCCAAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
2876 2999 2.238898 CTCCCTCCGTCCCAAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
2877 3000 2.026636 TCCCTCCGTCCCAAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
2878 3001 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
2879 3002 3.007635 CCTCCGTCCCAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2880 3003 2.671396 CTCCGTCCCAAAATACTTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
2881 3004 1.735571 CCGTCCCAAAATACTTGTCGG 59.264 52.381 0.00 0.00 0.00 4.79
2882 3005 2.613474 CCGTCCCAAAATACTTGTCGGA 60.613 50.000 0.00 0.00 38.03 4.55
2883 3006 2.671396 CGTCCCAAAATACTTGTCGGAG 59.329 50.000 0.00 0.00 0.00 4.63
2884 3007 3.615592 CGTCCCAAAATACTTGTCGGAGA 60.616 47.826 0.00 0.00 0.00 3.71
2885 3008 4.320870 GTCCCAAAATACTTGTCGGAGAA 58.679 43.478 0.00 0.00 39.69 2.87
2886 3009 4.758165 GTCCCAAAATACTTGTCGGAGAAA 59.242 41.667 0.00 0.00 39.69 2.52
2887 3010 5.414765 GTCCCAAAATACTTGTCGGAGAAAT 59.585 40.000 0.00 0.00 39.69 2.17
2888 3011 5.414454 TCCCAAAATACTTGTCGGAGAAATG 59.586 40.000 0.00 0.00 39.69 2.32
2889 3012 5.393027 CCCAAAATACTTGTCGGAGAAATGG 60.393 44.000 0.00 0.00 39.69 3.16
2890 3013 5.414454 CCAAAATACTTGTCGGAGAAATGGA 59.586 40.000 0.00 0.00 39.69 3.41
2891 3014 6.095440 CCAAAATACTTGTCGGAGAAATGGAT 59.905 38.462 0.00 0.00 39.69 3.41
2892 3015 7.362920 CCAAAATACTTGTCGGAGAAATGGATT 60.363 37.037 0.00 0.00 34.34 3.01
2893 3016 8.673711 CAAAATACTTGTCGGAGAAATGGATTA 58.326 33.333 0.00 0.00 32.02 1.75
2894 3017 8.801882 AAATACTTGTCGGAGAAATGGATTAA 57.198 30.769 0.00 0.00 32.02 1.40
2895 3018 8.801882 AATACTTGTCGGAGAAATGGATTAAA 57.198 30.769 0.00 0.00 39.69 1.52
2896 3019 8.980481 ATACTTGTCGGAGAAATGGATTAAAT 57.020 30.769 0.00 0.00 39.69 1.40
2897 3020 7.703058 ACTTGTCGGAGAAATGGATTAAATT 57.297 32.000 0.00 0.00 39.69 1.82
2898 3021 7.538575 ACTTGTCGGAGAAATGGATTAAATTG 58.461 34.615 0.00 0.00 39.69 2.32
2899 3022 7.393234 ACTTGTCGGAGAAATGGATTAAATTGA 59.607 33.333 0.00 0.00 39.69 2.57
2900 3023 7.695480 TGTCGGAGAAATGGATTAAATTGAA 57.305 32.000 0.00 0.00 39.69 2.69
2901 3024 8.292444 TGTCGGAGAAATGGATTAAATTGAAT 57.708 30.769 0.00 0.00 39.69 2.57
2902 3025 8.190122 TGTCGGAGAAATGGATTAAATTGAATG 58.810 33.333 0.00 0.00 39.69 2.67
2903 3026 8.190784 GTCGGAGAAATGGATTAAATTGAATGT 58.809 33.333 0.00 0.00 39.69 2.71
2904 3027 9.402320 TCGGAGAAATGGATTAAATTGAATGTA 57.598 29.630 0.00 0.00 0.00 2.29
2931 3054 8.671921 TCTATAACTAAAATACGCCTAGATCGG 58.328 37.037 8.75 0.00 0.00 4.18
2932 3055 5.779529 AACTAAAATACGCCTAGATCGGA 57.220 39.130 8.75 1.24 0.00 4.55
2933 3056 5.373981 ACTAAAATACGCCTAGATCGGAG 57.626 43.478 8.75 0.00 0.00 4.63
2934 3057 5.068636 ACTAAAATACGCCTAGATCGGAGA 58.931 41.667 8.75 0.00 45.75 3.71
2935 3058 4.931661 AAAATACGCCTAGATCGGAGAA 57.068 40.909 8.75 0.00 43.58 2.87
2936 3059 4.931661 AAATACGCCTAGATCGGAGAAA 57.068 40.909 8.75 0.00 43.58 2.52
2937 3060 5.470047 AAATACGCCTAGATCGGAGAAAT 57.530 39.130 8.75 0.00 43.58 2.17
2938 3061 2.802787 ACGCCTAGATCGGAGAAATG 57.197 50.000 8.75 0.00 43.58 2.32
2939 3062 1.341531 ACGCCTAGATCGGAGAAATGG 59.658 52.381 8.75 0.00 43.58 3.16
2940 3063 1.613925 CGCCTAGATCGGAGAAATGGA 59.386 52.381 0.00 0.00 43.58 3.41
2941 3064 2.232452 CGCCTAGATCGGAGAAATGGAT 59.768 50.000 0.00 0.00 43.58 3.41
2942 3065 3.444034 CGCCTAGATCGGAGAAATGGATA 59.556 47.826 0.00 0.00 43.58 2.59
2943 3066 4.082190 CGCCTAGATCGGAGAAATGGATAA 60.082 45.833 0.00 0.00 43.58 1.75
2944 3067 5.566826 CGCCTAGATCGGAGAAATGGATAAA 60.567 44.000 0.00 0.00 43.58 1.40
2945 3068 6.231211 GCCTAGATCGGAGAAATGGATAAAA 58.769 40.000 0.00 0.00 43.58 1.52
2946 3069 6.881602 GCCTAGATCGGAGAAATGGATAAAAT 59.118 38.462 0.00 0.00 43.58 1.82
2947 3070 7.391833 GCCTAGATCGGAGAAATGGATAAAATT 59.608 37.037 0.00 0.00 43.58 1.82
2948 3071 8.725148 CCTAGATCGGAGAAATGGATAAAATTG 58.275 37.037 0.00 0.00 43.58 2.32
2949 3072 9.494271 CTAGATCGGAGAAATGGATAAAATTGA 57.506 33.333 0.00 0.00 43.58 2.57
2950 3073 8.752005 AGATCGGAGAAATGGATAAAATTGAA 57.248 30.769 0.00 0.00 43.58 2.69
2951 3074 9.359653 AGATCGGAGAAATGGATAAAATTGAAT 57.640 29.630 0.00 0.00 43.58 2.57
2952 3075 9.403110 GATCGGAGAAATGGATAAAATTGAATG 57.597 33.333 0.00 0.00 43.58 2.67
2953 3076 8.292444 TCGGAGAAATGGATAAAATTGAATGT 57.708 30.769 0.00 0.00 0.00 2.71
2954 3077 9.402320 TCGGAGAAATGGATAAAATTGAATGTA 57.598 29.630 0.00 0.00 0.00 2.29
2990 3113 8.608844 AAATACGTCTAGATTCATCCATTTCC 57.391 34.615 0.00 0.00 0.00 3.13
2991 3114 4.962155 ACGTCTAGATTCATCCATTTCCC 58.038 43.478 0.00 0.00 0.00 3.97
2992 3115 4.202367 ACGTCTAGATTCATCCATTTCCCC 60.202 45.833 0.00 0.00 0.00 4.81
2993 3116 4.319177 GTCTAGATTCATCCATTTCCCCG 58.681 47.826 0.00 0.00 0.00 5.73
2994 3117 4.040461 GTCTAGATTCATCCATTTCCCCGA 59.960 45.833 0.00 0.00 0.00 5.14
2995 3118 3.214696 AGATTCATCCATTTCCCCGAC 57.785 47.619 0.00 0.00 0.00 4.79
2996 3119 2.509548 AGATTCATCCATTTCCCCGACA 59.490 45.455 0.00 0.00 0.00 4.35
2997 3120 2.889170 TTCATCCATTTCCCCGACAA 57.111 45.000 0.00 0.00 0.00 3.18
2998 3121 2.418368 TCATCCATTTCCCCGACAAG 57.582 50.000 0.00 0.00 0.00 3.16
2999 3122 1.633432 TCATCCATTTCCCCGACAAGT 59.367 47.619 0.00 0.00 0.00 3.16
3000 3123 2.841266 TCATCCATTTCCCCGACAAGTA 59.159 45.455 0.00 0.00 0.00 2.24
3001 3124 3.458118 TCATCCATTTCCCCGACAAGTAT 59.542 43.478 0.00 0.00 0.00 2.12
3002 3125 4.080015 TCATCCATTTCCCCGACAAGTATT 60.080 41.667 0.00 0.00 0.00 1.89
3003 3126 4.310022 TCCATTTCCCCGACAAGTATTT 57.690 40.909 0.00 0.00 0.00 1.40
3004 3127 4.266714 TCCATTTCCCCGACAAGTATTTC 58.733 43.478 0.00 0.00 0.00 2.17
3005 3128 3.380320 CCATTTCCCCGACAAGTATTTCC 59.620 47.826 0.00 0.00 0.00 3.13
3006 3129 2.389962 TTCCCCGACAAGTATTTCCG 57.610 50.000 0.00 0.00 0.00 4.30
3007 3130 0.538118 TCCCCGACAAGTATTTCCGG 59.462 55.000 0.00 0.00 39.85 5.14
3008 3131 0.538118 CCCCGACAAGTATTTCCGGA 59.462 55.000 0.00 0.00 42.49 5.14
3009 3132 1.648504 CCCGACAAGTATTTCCGGAC 58.351 55.000 1.83 0.00 42.49 4.79
3010 3133 1.274596 CCGACAAGTATTTCCGGACG 58.725 55.000 1.83 0.00 42.49 4.79
3011 3134 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3012 3135 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3013 3136 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3014 3137 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3015 3138 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3109 3232 6.701400 AGTTTTGTTCGCAAATAGCAATCTTT 59.299 30.769 0.00 0.00 45.34 2.52
3229 3352 4.150897 TCCTCTGGCATATGTTGTAACC 57.849 45.455 4.29 0.00 0.00 2.85
3263 3386 6.200854 CACATAAACTGATAGTGCGCTAATCA 59.799 38.462 11.71 13.63 0.00 2.57
3278 3401 6.127925 TGCGCTAATCAATGAGAAGATGTTTT 60.128 34.615 9.73 0.00 0.00 2.43
3408 3534 5.843019 TCCTCTCACCTTTTAATCTTGGT 57.157 39.130 0.00 0.00 0.00 3.67
3483 3609 4.243270 CGATAAAAGACGACTTTCTGGGT 58.757 43.478 13.08 0.55 44.32 4.51
3524 3650 3.242870 GGAGCGCTGTAAATGATCCAAAG 60.243 47.826 18.48 0.00 0.00 2.77
3532 3658 6.456181 GCTGTAAATGATCCAAAGAAGACTCG 60.456 42.308 0.00 0.00 0.00 4.18
3658 3786 4.838986 GCCTATCTAATGGAAGTCAGGGTA 59.161 45.833 0.00 0.00 0.00 3.69
3672 3800 4.836736 AGTCAGGGTACTGCTAGTGTTAAA 59.163 41.667 0.00 0.00 44.54 1.52
3699 3827 4.945246 AGTAACTGGCACCTGTATTATCG 58.055 43.478 0.00 0.00 0.00 2.92
3706 3834 6.267014 ACTGGCACCTGTATTATCGTAACTAT 59.733 38.462 0.00 0.00 0.00 2.12
3779 3908 1.081892 CTTCCAGACCAGATTGTGCG 58.918 55.000 0.00 0.00 0.00 5.34
3804 3934 2.279741 TGCATCGCATCTAACCACTTC 58.720 47.619 0.00 0.00 31.71 3.01
3805 3935 2.093500 TGCATCGCATCTAACCACTTCT 60.093 45.455 0.00 0.00 31.71 2.85
3823 3953 5.178252 CACTTCTTCTCACATTTGACGATGT 59.822 40.000 0.00 0.00 40.76 3.06
3910 4040 6.863275 TCTCAAGTGCGATGAAAGTATCTTA 58.137 36.000 0.00 0.00 0.00 2.10
3949 4079 5.235516 ACACTGATACTTAAGGTTGTTCCG 58.764 41.667 7.53 0.00 41.99 4.30
3976 4106 6.685527 TTGACAACACTGCACTAATAAACA 57.314 33.333 0.00 0.00 0.00 2.83
4033 4163 3.434167 GCTGTACCCTTCCATGATCACAT 60.434 47.826 0.00 0.00 37.19 3.21
4083 4213 1.350684 TCATTTGACCTAGCACCTGCA 59.649 47.619 0.00 0.00 45.16 4.41
4100 4231 5.581874 CACCTGCAAGAAAACAACTGAAATT 59.418 36.000 0.00 0.00 34.07 1.82
4170 4365 4.950050 ACACATATAGCTCACCTGCTTAC 58.050 43.478 0.00 0.00 43.74 2.34
4179 4374 1.213182 TCACCTGCTTACAACCCAACA 59.787 47.619 0.00 0.00 0.00 3.33
4183 4378 3.091545 CCTGCTTACAACCCAACATGAT 58.908 45.455 0.00 0.00 0.00 2.45
4207 4402 8.751302 ATTGTAAACGGTTTTTGGATGTTATC 57.249 30.769 11.87 0.00 0.00 1.75
4259 4454 8.311109 ACAAAGAAATTACAAACTGGTTCTTGT 58.689 29.630 0.00 0.00 35.92 3.16
4319 4514 1.890979 GCTGCTCCCATGATGTCCG 60.891 63.158 0.00 0.00 0.00 4.79
4327 4522 3.023119 TCCCATGATGTCCGAAAATTGG 58.977 45.455 0.00 0.00 0.00 3.16
4400 4595 5.869579 ACAATCTAGAACAGCTCCTGAAAA 58.130 37.500 0.00 0.00 35.18 2.29
4450 4646 7.044117 CGCATGAACACCACAATTATGAAATAC 60.044 37.037 0.00 0.00 0.00 1.89
4451 4647 7.044117 GCATGAACACCACAATTATGAAATACG 60.044 37.037 0.00 0.00 0.00 3.06
4452 4648 7.441890 TGAACACCACAATTATGAAATACGT 57.558 32.000 0.00 0.00 0.00 3.57
4453 4649 8.549338 TGAACACCACAATTATGAAATACGTA 57.451 30.769 0.00 0.00 0.00 3.57
4454 4650 8.444715 TGAACACCACAATTATGAAATACGTAC 58.555 33.333 0.00 0.00 0.00 3.67
4467 4663 6.656945 TGAAATACGTACGAGAATAGCTCTC 58.343 40.000 24.41 4.86 46.35 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 32 3.814945 CTCAGATTTTTGAGTGAACGCC 58.185 45.455 0.00 0.00 39.76 5.68
24 49 7.273598 GCTATATGATTGCAAATTGATGCTCAG 59.726 37.037 1.71 0.00 46.54 3.35
54 79 3.751175 GTGTAACATAAGGTGCTCTGCAA 59.249 43.478 0.00 0.00 37.19 4.08
80 105 8.882736 CATTCACAAACTGCTATACATTCACTA 58.117 33.333 0.00 0.00 0.00 2.74
81 106 7.391554 ACATTCACAAACTGCTATACATTCACT 59.608 33.333 0.00 0.00 0.00 3.41
82 107 7.530010 ACATTCACAAACTGCTATACATTCAC 58.470 34.615 0.00 0.00 0.00 3.18
83 108 7.686438 ACATTCACAAACTGCTATACATTCA 57.314 32.000 0.00 0.00 0.00 2.57
86 111 8.993121 GCTATACATTCACAAACTGCTATACAT 58.007 33.333 0.00 0.00 0.00 2.29
87 112 7.984617 TGCTATACATTCACAAACTGCTATACA 59.015 33.333 0.00 0.00 0.00 2.29
88 113 8.365399 TGCTATACATTCACAAACTGCTATAC 57.635 34.615 0.00 0.00 0.00 1.47
89 114 8.956533 TTGCTATACATTCACAAACTGCTATA 57.043 30.769 0.00 0.00 0.00 1.31
90 115 7.864108 TTGCTATACATTCACAAACTGCTAT 57.136 32.000 0.00 0.00 0.00 2.97
91 116 7.680442 TTTGCTATACATTCACAAACTGCTA 57.320 32.000 0.00 0.00 0.00 3.49
92 117 6.573664 TTTGCTATACATTCACAAACTGCT 57.426 33.333 0.00 0.00 0.00 4.24
93 118 6.183359 CGTTTTGCTATACATTCACAAACTGC 60.183 38.462 0.00 0.00 30.49 4.40
94 119 6.855914 ACGTTTTGCTATACATTCACAAACTG 59.144 34.615 0.00 0.00 30.49 3.16
95 120 6.855914 CACGTTTTGCTATACATTCACAAACT 59.144 34.615 0.00 0.00 30.49 2.66
96 121 6.087555 CCACGTTTTGCTATACATTCACAAAC 59.912 38.462 0.00 0.00 30.49 2.93
97 122 6.146216 CCACGTTTTGCTATACATTCACAAA 58.854 36.000 0.00 0.00 0.00 2.83
118 143 7.120285 GGGAGTAGTGTAAAATAAGGAAACCAC 59.880 40.741 0.00 0.00 0.00 4.16
140 165 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
142 167 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
143 168 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
144 169 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
145 170 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
146 171 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
147 172 8.263940 TCTAGAAAGACAAATATTTGGGAACG 57.736 34.615 27.43 11.14 42.34 3.95
163 188 9.567776 TGTAACCATTTCAAATGTCTAGAAAGA 57.432 29.630 9.31 0.00 35.05 2.52
165 190 9.959749 GTTGTAACCATTTCAAATGTCTAGAAA 57.040 29.630 9.31 0.00 35.92 2.52
166 191 9.126151 TGTTGTAACCATTTCAAATGTCTAGAA 57.874 29.630 9.31 2.60 0.00 2.10
167 192 8.684386 TGTTGTAACCATTTCAAATGTCTAGA 57.316 30.769 9.31 0.00 0.00 2.43
170 195 8.020819 CGTATGTTGTAACCATTTCAAATGTCT 58.979 33.333 9.31 0.00 0.00 3.41
171 196 7.272515 CCGTATGTTGTAACCATTTCAAATGTC 59.727 37.037 9.31 0.00 0.00 3.06
172 197 7.040340 TCCGTATGTTGTAACCATTTCAAATGT 60.040 33.333 9.31 0.00 0.00 2.71
173 198 7.309177 TCCGTATGTTGTAACCATTTCAAATG 58.691 34.615 2.80 2.80 0.00 2.32
174 199 7.455641 TCCGTATGTTGTAACCATTTCAAAT 57.544 32.000 0.00 0.00 0.00 2.32
175 200 6.879276 TCCGTATGTTGTAACCATTTCAAA 57.121 33.333 0.00 0.00 0.00 2.69
176 201 6.431543 ACATCCGTATGTTGTAACCATTTCAA 59.568 34.615 0.00 0.00 44.07 2.69
177 202 5.941058 ACATCCGTATGTTGTAACCATTTCA 59.059 36.000 0.00 0.00 44.07 2.69
178 203 6.431198 ACATCCGTATGTTGTAACCATTTC 57.569 37.500 0.00 0.00 44.07 2.17
179 204 7.925993 CATACATCCGTATGTTGTAACCATTT 58.074 34.615 0.00 0.00 46.70 2.32
180 205 7.490962 CATACATCCGTATGTTGTAACCATT 57.509 36.000 0.00 0.00 46.70 3.16
220 245 3.839293 ACGAAGCAGAGTGAATCTACAC 58.161 45.455 0.00 0.00 36.10 2.90
221 246 5.125578 ACATACGAAGCAGAGTGAATCTACA 59.874 40.000 0.00 0.00 36.10 2.74
222 247 5.583495 ACATACGAAGCAGAGTGAATCTAC 58.417 41.667 0.00 0.00 36.10 2.59
223 248 5.836821 ACATACGAAGCAGAGTGAATCTA 57.163 39.130 0.00 0.00 36.10 1.98
224 249 4.727507 ACATACGAAGCAGAGTGAATCT 57.272 40.909 0.00 0.00 39.56 2.40
225 250 5.583495 ACTACATACGAAGCAGAGTGAATC 58.417 41.667 0.00 0.00 0.00 2.52
226 251 5.125578 TGACTACATACGAAGCAGAGTGAAT 59.874 40.000 0.00 0.00 0.00 2.57
227 252 4.457949 TGACTACATACGAAGCAGAGTGAA 59.542 41.667 0.00 0.00 0.00 3.18
228 253 4.007659 TGACTACATACGAAGCAGAGTGA 58.992 43.478 0.00 0.00 0.00 3.41
229 254 4.099120 GTGACTACATACGAAGCAGAGTG 58.901 47.826 0.00 0.00 0.00 3.51
230 255 4.011023 AGTGACTACATACGAAGCAGAGT 58.989 43.478 0.00 0.00 0.00 3.24
231 256 4.624336 AGTGACTACATACGAAGCAGAG 57.376 45.455 0.00 0.00 0.00 3.35
232 257 4.217767 ACAAGTGACTACATACGAAGCAGA 59.782 41.667 0.00 0.00 0.00 4.26
233 258 4.486090 ACAAGTGACTACATACGAAGCAG 58.514 43.478 0.00 0.00 0.00 4.24
234 259 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
235 260 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
236 261 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
237 262 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
238 263 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
239 264 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
240 265 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
242 267 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
243 268 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
244 269 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
245 270 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
246 271 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
247 272 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
248 273 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
249 274 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
250 275 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
263 288 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
264 289 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
265 290 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
266 291 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
267 292 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
268 293 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
269 294 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
270 295 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
271 296 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
272 297 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
273 298 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
274 299 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
275 300 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
276 301 7.954620 ACTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
277 302 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
278 303 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
279 304 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
280 305 5.134725 ACTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
281 306 4.803329 ACTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
282 307 3.684408 ACTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
283 308 4.081254 ACAAACTAATACTCCCTCCGTTCC 60.081 45.833 0.00 0.00 0.00 3.62
284 309 4.868734 CACAAACTAATACTCCCTCCGTTC 59.131 45.833 0.00 0.00 0.00 3.95
285 310 4.529377 TCACAAACTAATACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
286 311 4.091549 TCACAAACTAATACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
287 312 4.730949 TCACAAACTAATACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
288 313 6.539103 GTCATTCACAAACTAATACTCCCTCC 59.461 42.308 0.00 0.00 0.00 4.30
289 314 7.064728 GTGTCATTCACAAACTAATACTCCCTC 59.935 40.741 0.00 0.00 45.51 4.30
290 315 6.879458 GTGTCATTCACAAACTAATACTCCCT 59.121 38.462 0.00 0.00 45.51 4.20
291 316 7.073342 GTGTCATTCACAAACTAATACTCCC 57.927 40.000 0.00 0.00 45.51 4.30
305 330 1.588674 TTCACCACGGTGTCATTCAC 58.411 50.000 15.65 0.00 45.55 3.18
306 331 1.944024 GTTTCACCACGGTGTCATTCA 59.056 47.619 15.65 0.00 45.55 2.57
307 332 1.944024 TGTTTCACCACGGTGTCATTC 59.056 47.619 15.65 4.86 45.55 2.67
308 333 2.045561 TGTTTCACCACGGTGTCATT 57.954 45.000 15.65 0.00 45.55 2.57
309 334 2.045561 TTGTTTCACCACGGTGTCAT 57.954 45.000 15.65 0.00 45.55 3.06
310 335 2.045561 ATTGTTTCACCACGGTGTCA 57.954 45.000 15.65 10.70 45.55 3.58
311 336 4.214545 TGATAATTGTTTCACCACGGTGTC 59.785 41.667 15.65 8.51 45.55 3.67
312 337 4.138290 TGATAATTGTTTCACCACGGTGT 58.862 39.130 15.65 0.00 45.55 4.16
313 338 4.757799 TGATAATTGTTTCACCACGGTG 57.242 40.909 10.09 10.09 46.64 4.94
314 339 4.398044 GGATGATAATTGTTTCACCACGGT 59.602 41.667 0.00 0.00 0.00 4.83
315 340 4.397730 TGGATGATAATTGTTTCACCACGG 59.602 41.667 0.00 0.00 0.00 4.94
316 341 5.123820 AGTGGATGATAATTGTTTCACCACG 59.876 40.000 19.27 0.00 42.45 4.94
317 342 6.515272 AGTGGATGATAATTGTTTCACCAC 57.485 37.500 18.62 18.62 40.47 4.16
318 343 8.642935 TTTAGTGGATGATAATTGTTTCACCA 57.357 30.769 0.00 0.00 0.00 4.17
332 357 2.501723 GCCCAGAGTCTTTAGTGGATGA 59.498 50.000 0.00 0.00 31.04 2.92
354 379 5.657470 TTGCTATATGATTGCGAACTGAC 57.343 39.130 0.00 0.00 33.65 3.51
361 386 6.200854 TGTCTGTACTTTGCTATATGATTGCG 59.799 38.462 0.00 0.00 33.65 4.85
401 426 2.303600 ACCCTTGCTCCGTTGTTGTATA 59.696 45.455 0.00 0.00 0.00 1.47
498 523 0.039527 GAGATTGGCCGTGCGTTTTT 60.040 50.000 0.00 0.00 0.00 1.94
538 563 5.963176 TGCTTTCTTCAGATGCAATGTTA 57.037 34.783 0.00 0.00 33.35 2.41
555 580 4.399303 CCCTTTGAATATCTCCGTTGCTTT 59.601 41.667 0.00 0.00 0.00 3.51
563 588 5.719563 TGTTTTTCCCCCTTTGAATATCTCC 59.280 40.000 0.00 0.00 0.00 3.71
581 606 1.399215 CGGCGCGTCAAGTATGTTTTT 60.399 47.619 12.89 0.00 0.00 1.94
793 819 1.361543 TCACCCCTACTAGTGCTCCTT 59.638 52.381 5.39 0.00 33.90 3.36
852 878 2.895680 GATCTGACCTCCAGCGCA 59.104 61.111 11.47 0.00 42.62 6.09
1059 1114 3.282745 GAGCTTGTCGCGGAGGTGA 62.283 63.158 6.13 0.00 45.59 4.02
1405 1468 2.741486 TAAACCGGGCACTGAGGCAC 62.741 60.000 6.32 0.00 46.44 5.01
1406 1469 2.521451 TAAACCGGGCACTGAGGCA 61.521 57.895 6.32 0.00 46.44 4.75
1407 1470 2.038837 GTAAACCGGGCACTGAGGC 61.039 63.158 6.32 0.00 43.27 4.70
1408 1471 0.673644 CAGTAAACCGGGCACTGAGG 60.674 60.000 21.36 1.44 41.80 3.86
1409 1472 0.320374 TCAGTAAACCGGGCACTGAG 59.680 55.000 23.38 7.01 42.75 3.35
1410 1473 0.034337 GTCAGTAAACCGGGCACTGA 59.966 55.000 23.38 23.38 44.78 3.41
1411 1474 0.034896 AGTCAGTAAACCGGGCACTG 59.965 55.000 20.38 20.38 40.83 3.66
1412 1475 0.763035 AAGTCAGTAAACCGGGCACT 59.237 50.000 6.32 2.22 0.00 4.40
1440 1503 3.119602 CCATCTGCAGAACCAACAAGATG 60.120 47.826 22.50 10.00 33.73 2.90
1642 1705 3.634568 TTTTACATGAACCGGCACAAG 57.365 42.857 0.00 1.25 0.00 3.16
1648 1711 6.088883 GCACACTTAATTTTTACATGAACCGG 59.911 38.462 0.00 0.00 0.00 5.28
1656 1719 7.316640 ACACACAAGCACACTTAATTTTTACA 58.683 30.769 0.00 0.00 33.74 2.41
1752 1815 3.006323 AGCATACCGATCCATCAGAAGTC 59.994 47.826 0.00 0.00 0.00 3.01
1820 1885 0.179034 GCAGGGCACTTAGCTAGCAT 60.179 55.000 18.83 4.67 44.79 3.79
1822 1887 0.107459 AAGCAGGGCACTTAGCTAGC 60.107 55.000 6.62 6.62 44.79 3.42
1908 1973 9.240159 CATTTAACGTGTTTTAAGCCTAAGTTT 57.760 29.630 0.00 0.00 0.00 2.66
1934 1999 8.710551 GGTCAAAAGAGTTTAGTCTAAGTAAGC 58.289 37.037 0.00 0.00 0.00 3.09
1935 2000 9.984190 AGGTCAAAAGAGTTTAGTCTAAGTAAG 57.016 33.333 0.00 0.00 0.00 2.34
2044 2110 9.650371 GATTTAATTTCTCAACAAGCCAAAAAC 57.350 29.630 0.00 0.00 0.00 2.43
2046 2112 8.954950 TGATTTAATTTCTCAACAAGCCAAAA 57.045 26.923 0.00 0.00 0.00 2.44
2140 2250 5.646467 TTGTGCAACTCTTAACGAACTAC 57.354 39.130 0.00 0.00 38.04 2.73
2146 2256 5.498542 GCAAACTTTTGTGCAACTCTTAACG 60.499 40.000 3.74 0.00 40.58 3.18
2166 2276 0.878523 CCGTCAACAGACCGAGCAAA 60.879 55.000 0.00 0.00 0.00 3.68
2176 2286 7.414436 TGTTCTTTTCTTTATTCCGTCAACAG 58.586 34.615 0.00 0.00 0.00 3.16
2183 2293 6.695278 TGCAGTTTGTTCTTTTCTTTATTCCG 59.305 34.615 0.00 0.00 0.00 4.30
2184 2294 7.491048 TGTGCAGTTTGTTCTTTTCTTTATTCC 59.509 33.333 0.00 0.00 0.00 3.01
2260 2373 0.800631 TACGTAGCACACCTCACTCG 59.199 55.000 0.00 0.00 0.00 4.18
2271 2384 1.080093 GCAGCAGTGGTACGTAGCA 60.080 57.895 22.78 22.78 0.00 3.49
2274 2387 1.601419 GGAGGCAGCAGTGGTACGTA 61.601 60.000 0.00 0.00 0.00 3.57
2295 2408 4.380843 AACATAAGTTGGTGATGGTGGA 57.619 40.909 0.00 0.00 36.39 4.02
2399 2518 9.807649 AATTTCATTTCCAAGATGCTACAATAC 57.192 29.630 0.00 0.00 0.00 1.89
2406 2525 5.929992 CACACAATTTCATTTCCAAGATGCT 59.070 36.000 0.00 0.00 0.00 3.79
2448 2567 3.055819 GGATCCTGCGATTATAGCCAGAA 60.056 47.826 3.84 0.00 0.00 3.02
2449 2568 2.497675 GGATCCTGCGATTATAGCCAGA 59.502 50.000 3.84 0.00 0.00 3.86
2450 2569 2.234661 TGGATCCTGCGATTATAGCCAG 59.765 50.000 14.23 0.00 0.00 4.85
2451 2570 2.256306 TGGATCCTGCGATTATAGCCA 58.744 47.619 14.23 0.00 0.00 4.75
2461 2581 2.749280 TATAGCACATGGATCCTGCG 57.251 50.000 14.23 3.66 35.98 5.18
2463 2583 7.698506 AATTTCATATAGCACATGGATCCTG 57.301 36.000 14.23 11.14 0.00 3.86
2464 2584 9.404848 CATAATTTCATATAGCACATGGATCCT 57.595 33.333 14.23 0.00 0.00 3.24
2645 2765 9.154847 ACTTTCTTTTTGAATTTTCACCTGAAG 57.845 29.630 0.00 0.00 36.83 3.02
2732 2852 7.889873 TCAGAAACTTCCATAAAACAAAGGA 57.110 32.000 0.00 0.00 0.00 3.36
2760 2880 7.917505 CACAAAATTCTAGACTTGAGCACTTTT 59.082 33.333 12.95 0.00 0.00 2.27
2761 2881 7.420800 CACAAAATTCTAGACTTGAGCACTTT 58.579 34.615 12.95 0.00 0.00 2.66
2790 2913 6.432581 ACATATGGTAGTTACTCAGAGGTCA 58.567 40.000 7.80 0.00 0.00 4.02
2851 2974 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
2852 2975 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2853 2976 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2854 2977 1.558294 GTATTTTGGGACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
2855 2978 1.838077 AGTATTTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
2856 2979 1.961133 AGTATTTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
2857 2980 2.290705 ACAAGTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2858 2981 3.007635 GACAAGTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2859 2982 2.671396 CGACAAGTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
2860 2983 2.613474 CCGACAAGTATTTTGGGACGGA 60.613 50.000 0.00 0.00 37.12 4.69
2861 2984 1.735571 CCGACAAGTATTTTGGGACGG 59.264 52.381 0.00 0.00 0.00 4.79
2862 2985 2.671396 CTCCGACAAGTATTTTGGGACG 59.329 50.000 0.00 0.00 0.00 4.79
2863 2986 3.934068 TCTCCGACAAGTATTTTGGGAC 58.066 45.455 0.00 0.00 0.00 4.46
2864 2987 4.627284 TTCTCCGACAAGTATTTTGGGA 57.373 40.909 0.00 0.00 0.00 4.37
2865 2988 5.393027 CCATTTCTCCGACAAGTATTTTGGG 60.393 44.000 0.00 0.00 0.00 4.12
2866 2989 5.414454 TCCATTTCTCCGACAAGTATTTTGG 59.586 40.000 0.00 0.00 0.00 3.28
2867 2990 6.494893 TCCATTTCTCCGACAAGTATTTTG 57.505 37.500 0.00 0.00 0.00 2.44
2868 2991 7.703058 AATCCATTTCTCCGACAAGTATTTT 57.297 32.000 0.00 0.00 0.00 1.82
2869 2992 8.801882 TTAATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2870 2993 8.801882 TTTAATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2871 2994 8.980481 ATTTAATCCATTTCTCCGACAAGTAT 57.020 30.769 0.00 0.00 0.00 2.12
2872 2995 8.673711 CAATTTAATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2873 2996 7.393234 TCAATTTAATCCATTTCTCCGACAAGT 59.607 33.333 0.00 0.00 0.00 3.16
2874 2997 7.761409 TCAATTTAATCCATTTCTCCGACAAG 58.239 34.615 0.00 0.00 0.00 3.16
2875 2998 7.695480 TCAATTTAATCCATTTCTCCGACAA 57.305 32.000 0.00 0.00 0.00 3.18
2876 2999 7.695480 TTCAATTTAATCCATTTCTCCGACA 57.305 32.000 0.00 0.00 0.00 4.35
2877 3000 8.190784 ACATTCAATTTAATCCATTTCTCCGAC 58.809 33.333 0.00 0.00 0.00 4.79
2878 3001 8.292444 ACATTCAATTTAATCCATTTCTCCGA 57.708 30.769 0.00 0.00 0.00 4.55
2905 3028 8.671921 CCGATCTAGGCGTATTTTAGTTATAGA 58.328 37.037 5.45 0.00 0.00 1.98
2906 3029 8.671921 TCCGATCTAGGCGTATTTTAGTTATAG 58.328 37.037 5.45 0.00 0.00 1.31
2907 3030 8.565896 TCCGATCTAGGCGTATTTTAGTTATA 57.434 34.615 5.45 0.00 0.00 0.98
2908 3031 7.392673 TCTCCGATCTAGGCGTATTTTAGTTAT 59.607 37.037 5.45 0.00 0.00 1.89
2909 3032 6.712095 TCTCCGATCTAGGCGTATTTTAGTTA 59.288 38.462 5.45 0.00 0.00 2.24
2910 3033 5.533903 TCTCCGATCTAGGCGTATTTTAGTT 59.466 40.000 5.45 0.00 0.00 2.24
2911 3034 5.068636 TCTCCGATCTAGGCGTATTTTAGT 58.931 41.667 5.45 0.00 0.00 2.24
2912 3035 5.624344 TCTCCGATCTAGGCGTATTTTAG 57.376 43.478 5.45 0.00 0.00 1.85
2913 3036 6.395426 TTTCTCCGATCTAGGCGTATTTTA 57.605 37.500 5.45 0.00 0.00 1.52
2914 3037 4.931661 TTCTCCGATCTAGGCGTATTTT 57.068 40.909 5.45 0.00 0.00 1.82
2915 3038 4.931661 TTTCTCCGATCTAGGCGTATTT 57.068 40.909 5.45 0.00 0.00 1.40
2916 3039 4.322049 CCATTTCTCCGATCTAGGCGTATT 60.322 45.833 5.45 0.00 0.00 1.89
2917 3040 3.193691 CCATTTCTCCGATCTAGGCGTAT 59.806 47.826 5.45 0.00 0.00 3.06
2918 3041 2.557056 CCATTTCTCCGATCTAGGCGTA 59.443 50.000 5.45 0.00 0.00 4.42
2919 3042 1.341531 CCATTTCTCCGATCTAGGCGT 59.658 52.381 5.45 0.00 0.00 5.68
2920 3043 1.613925 TCCATTTCTCCGATCTAGGCG 59.386 52.381 0.00 0.00 0.00 5.52
2921 3044 3.971245 ATCCATTTCTCCGATCTAGGC 57.029 47.619 0.00 0.00 0.00 3.93
2922 3045 8.725148 CAATTTTATCCATTTCTCCGATCTAGG 58.275 37.037 0.00 0.00 0.00 3.02
2923 3046 9.494271 TCAATTTTATCCATTTCTCCGATCTAG 57.506 33.333 0.00 0.00 0.00 2.43
2924 3047 9.845740 TTCAATTTTATCCATTTCTCCGATCTA 57.154 29.630 0.00 0.00 0.00 1.98
2925 3048 8.752005 TTCAATTTTATCCATTTCTCCGATCT 57.248 30.769 0.00 0.00 0.00 2.75
2926 3049 9.403110 CATTCAATTTTATCCATTTCTCCGATC 57.597 33.333 0.00 0.00 0.00 3.69
2927 3050 8.917088 ACATTCAATTTTATCCATTTCTCCGAT 58.083 29.630 0.00 0.00 0.00 4.18
2928 3051 8.292444 ACATTCAATTTTATCCATTTCTCCGA 57.708 30.769 0.00 0.00 0.00 4.55
2964 3087 9.057089 GGAAATGGATGAATCTAGACGTATTTT 57.943 33.333 0.00 0.00 0.00 1.82
2965 3088 7.661847 GGGAAATGGATGAATCTAGACGTATTT 59.338 37.037 0.00 0.00 0.00 1.40
2966 3089 7.162082 GGGAAATGGATGAATCTAGACGTATT 58.838 38.462 0.00 0.00 0.00 1.89
2967 3090 6.295916 GGGGAAATGGATGAATCTAGACGTAT 60.296 42.308 0.00 0.00 0.00 3.06
2968 3091 5.011738 GGGGAAATGGATGAATCTAGACGTA 59.988 44.000 0.00 0.00 0.00 3.57
2969 3092 4.202367 GGGGAAATGGATGAATCTAGACGT 60.202 45.833 0.00 0.00 0.00 4.34
2970 3093 4.319177 GGGGAAATGGATGAATCTAGACG 58.681 47.826 0.00 0.00 0.00 4.18
2971 3094 4.040461 TCGGGGAAATGGATGAATCTAGAC 59.960 45.833 0.00 0.00 0.00 2.59
2972 3095 4.040461 GTCGGGGAAATGGATGAATCTAGA 59.960 45.833 0.00 0.00 0.00 2.43
2973 3096 4.202357 TGTCGGGGAAATGGATGAATCTAG 60.202 45.833 0.00 0.00 0.00 2.43
2974 3097 3.714280 TGTCGGGGAAATGGATGAATCTA 59.286 43.478 0.00 0.00 0.00 1.98
2975 3098 2.509548 TGTCGGGGAAATGGATGAATCT 59.490 45.455 0.00 0.00 0.00 2.40
2976 3099 2.930950 TGTCGGGGAAATGGATGAATC 58.069 47.619 0.00 0.00 0.00 2.52
2977 3100 3.290710 CTTGTCGGGGAAATGGATGAAT 58.709 45.455 0.00 0.00 0.00 2.57
2978 3101 2.041081 ACTTGTCGGGGAAATGGATGAA 59.959 45.455 0.00 0.00 0.00 2.57
2979 3102 1.633432 ACTTGTCGGGGAAATGGATGA 59.367 47.619 0.00 0.00 0.00 2.92
2980 3103 2.128771 ACTTGTCGGGGAAATGGATG 57.871 50.000 0.00 0.00 0.00 3.51
2981 3104 4.519906 AATACTTGTCGGGGAAATGGAT 57.480 40.909 0.00 0.00 0.00 3.41
2982 3105 4.266714 GAAATACTTGTCGGGGAAATGGA 58.733 43.478 0.00 0.00 0.00 3.41
2983 3106 3.380320 GGAAATACTTGTCGGGGAAATGG 59.620 47.826 0.00 0.00 0.00 3.16
2984 3107 3.064820 CGGAAATACTTGTCGGGGAAATG 59.935 47.826 0.00 0.00 0.00 2.32
2985 3108 3.275999 CGGAAATACTTGTCGGGGAAAT 58.724 45.455 0.00 0.00 0.00 2.17
2986 3109 2.616001 CCGGAAATACTTGTCGGGGAAA 60.616 50.000 0.00 0.00 37.35 3.13
2987 3110 1.065998 CCGGAAATACTTGTCGGGGAA 60.066 52.381 0.00 0.00 37.35 3.97
2988 3111 0.538118 CCGGAAATACTTGTCGGGGA 59.462 55.000 0.00 0.00 37.35 4.81
2989 3112 0.538118 TCCGGAAATACTTGTCGGGG 59.462 55.000 0.00 0.00 40.92 5.73
2990 3113 1.648504 GTCCGGAAATACTTGTCGGG 58.351 55.000 5.23 0.00 40.92 5.14
2991 3114 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2992 3115 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2993 3116 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2994 3117 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2995 3118 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2996 3119 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2997 3120 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2998 3121 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2999 3122 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3000 3123 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3001 3124 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3002 3125 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3003 3126 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3004 3127 2.832201 GGTACTCCCTCCGTCCGG 60.832 72.222 0.00 0.00 0.00 5.14
3005 3128 1.041447 AATGGTACTCCCTCCGTCCG 61.041 60.000 0.00 0.00 0.00 4.79
3006 3129 2.077687 TAATGGTACTCCCTCCGTCC 57.922 55.000 0.00 0.00 0.00 4.79
3007 3130 3.294214 TCTTAATGGTACTCCCTCCGTC 58.706 50.000 0.00 0.00 0.00 4.79
3008 3131 3.393426 TCTTAATGGTACTCCCTCCGT 57.607 47.619 0.00 0.00 0.00 4.69
3009 3132 3.895656 TGATCTTAATGGTACTCCCTCCG 59.104 47.826 0.00 0.00 0.00 4.63
3010 3133 6.234177 CAATGATCTTAATGGTACTCCCTCC 58.766 44.000 0.00 0.00 0.00 4.30
3011 3134 5.703130 GCAATGATCTTAATGGTACTCCCTC 59.297 44.000 0.00 0.00 0.00 4.30
3012 3135 5.132648 TGCAATGATCTTAATGGTACTCCCT 59.867 40.000 0.00 0.00 0.00 4.20
3013 3136 5.376625 TGCAATGATCTTAATGGTACTCCC 58.623 41.667 0.00 0.00 0.00 4.30
3014 3137 7.661437 TGTATGCAATGATCTTAATGGTACTCC 59.339 37.037 0.00 0.00 0.00 3.85
3015 3138 8.607441 TGTATGCAATGATCTTAATGGTACTC 57.393 34.615 0.00 0.00 0.00 2.59
3192 3315 6.493115 TGCCAGAGGAAAGAACATCAAATTTA 59.507 34.615 0.00 0.00 0.00 1.40
3229 3352 1.086696 CAGTTTATGTGCCTCGGGTG 58.913 55.000 0.00 0.00 0.00 4.61
3263 3386 8.441312 ACATTTTTGCAAAACATCTTCTCATT 57.559 26.923 23.79 1.50 0.00 2.57
3278 3401 7.718753 ACCAGGAAAATATTCAACATTTTTGCA 59.281 29.630 0.00 0.00 36.09 4.08
3346 3472 7.514125 GCGATTGTAGTTTCATGATGAAATTGC 60.514 37.037 21.91 20.44 46.55 3.56
3524 3650 0.529555 GGAGAGCATGCCGAGTCTTC 60.530 60.000 15.66 5.58 0.00 2.87
3532 3658 1.372087 CGGAAGTTGGAGAGCATGCC 61.372 60.000 15.66 6.03 0.00 4.40
3706 3834 6.775142 TCAACCACCACAATTAGAAAAGATCA 59.225 34.615 0.00 0.00 0.00 2.92
3715 3843 7.035004 CCAAACATATCAACCACCACAATTAG 58.965 38.462 0.00 0.00 0.00 1.73
3719 3847 4.474394 TCCAAACATATCAACCACCACAA 58.526 39.130 0.00 0.00 0.00 3.33
3793 3922 6.706270 GTCAAATGTGAGAAGAAGTGGTTAGA 59.294 38.462 0.00 0.00 33.27 2.10
3798 3928 4.058124 TCGTCAAATGTGAGAAGAAGTGG 58.942 43.478 0.00 0.00 33.27 4.00
3804 3934 7.482743 CCAATTAACATCGTCAAATGTGAGAAG 59.517 37.037 0.00 0.00 39.76 2.85
3805 3935 7.040755 ACCAATTAACATCGTCAAATGTGAGAA 60.041 33.333 0.00 0.00 39.76 2.87
3823 3953 7.824779 ACTTTTAAAACAACTGCCACCAATTAA 59.175 29.630 0.00 0.00 0.00 1.40
3872 4002 4.394300 GCACTTGAGAGCATTGACTTGTAT 59.606 41.667 0.00 0.00 0.00 2.29
3938 4068 2.993937 TGTCAAAGACGGAACAACCTT 58.006 42.857 0.00 0.00 34.95 3.50
3949 4079 4.875544 TTAGTGCAGTGTTGTCAAAGAC 57.124 40.909 3.69 0.00 0.00 3.01
3976 4106 3.886123 AGCGAATGGTGTTTATTAGCCT 58.114 40.909 0.00 0.00 37.00 4.58
4083 4213 7.383300 GCATCAGCTAATTTCAGTTGTTTTCTT 59.617 33.333 0.00 0.00 37.91 2.52
4100 4231 7.303182 AGTAGGTTACATATTGCATCAGCTA 57.697 36.000 0.00 0.00 42.74 3.32
4136 4318 4.993584 AGCTATATGTGTTCTGTATGCAGC 59.006 41.667 5.85 0.00 42.29 5.25
4148 4343 4.405680 TGTAAGCAGGTGAGCTATATGTGT 59.594 41.667 0.00 0.00 45.89 3.72
4170 4365 4.233789 CCGTTTACAATCATGTTGGGTTG 58.766 43.478 11.15 0.00 41.05 3.77
4179 4374 6.754193 ACATCCAAAAACCGTTTACAATCAT 58.246 32.000 0.00 0.00 0.00 2.45
4207 4402 1.597663 GTGACTCACGTGGACAAAAGG 59.402 52.381 17.00 0.00 0.00 3.11
4259 4454 0.250234 GCAGTAGCATGGACAGTGGA 59.750 55.000 0.00 0.00 41.58 4.02
4438 4634 9.909644 AGCTATTCTCGTACGTATTTCATAATT 57.090 29.630 16.05 0.00 0.00 1.40
4467 4663 5.364778 TGGTTTGATGGTATCAGGTATTCG 58.635 41.667 0.00 0.00 40.94 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.