Multiple sequence alignment - TraesCS1B01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G259400 chr1B 100.000 2753 0 0 1 2753 456841289 456838537 0.000000e+00 5084.0
1 TraesCS1B01G259400 chr1D 89.870 1619 87 25 1157 2753 341176593 341175030 0.000000e+00 2010.0
2 TraesCS1B01G259400 chr1D 85.606 528 38 20 645 1156 341177143 341176638 1.130000e-143 520.0
3 TraesCS1B01G259400 chr1A 85.888 1318 127 36 1157 2444 440801765 440800477 0.000000e+00 1349.0
4 TraesCS1B01G259400 chr1A 83.488 539 55 16 626 1156 440802322 440801810 3.210000e-129 472.0
5 TraesCS1B01G259400 chr1A 87.640 178 22 0 2576 2753 440800429 440800252 9.990000e-50 207.0
6 TraesCS1B01G259400 chr1A 88.344 163 18 1 54 215 440802549 440802387 7.780000e-46 195.0
7 TraesCS1B01G259400 chr1A 93.269 104 7 0 2489 2592 440800488 440800385 1.320000e-33 154.0
8 TraesCS1B01G259400 chr6B 80.128 156 25 5 466 619 661047829 661047678 8.060000e-21 111.0
9 TraesCS1B01G259400 chr2A 80.137 146 27 2 475 619 756836836 756836692 1.040000e-19 108.0
10 TraesCS1B01G259400 chr2B 83.636 110 18 0 510 619 584724006 584723897 1.350000e-18 104.0
11 TraesCS1B01G259400 chr2B 81.102 127 21 1 493 616 767471748 767471874 6.270000e-17 99.0
12 TraesCS1B01G259400 chr6A 83.117 77 12 1 542 618 578040007 578039932 4.920000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G259400 chr1B 456838537 456841289 2752 True 5084.0 5084 100.0000 1 2753 1 chr1B.!!$R1 2752
1 TraesCS1B01G259400 chr1D 341175030 341177143 2113 True 1265.0 2010 87.7380 645 2753 2 chr1D.!!$R1 2108
2 TraesCS1B01G259400 chr1A 440800252 440802549 2297 True 475.4 1349 87.7258 54 2753 5 chr1A.!!$R1 2699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 313 0.030369 CGTGCCGGTAGGAGACATAC 59.97 60.0 6.36 0.0 41.02 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 2335 0.830648 CCCAATCTCTTACCCGCTCA 59.169 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.203181 GCCCAGGCTGCTCTCATC 60.203 66.667 9.56 0.00 38.26 2.92
20 21 2.744243 GCCCAGGCTGCTCTCATCT 61.744 63.158 9.56 0.00 38.26 2.90
21 22 1.913722 CCCAGGCTGCTCTCATCTT 59.086 57.895 9.56 0.00 0.00 2.40
22 23 0.179051 CCCAGGCTGCTCTCATCTTC 60.179 60.000 9.56 0.00 0.00 2.87
23 24 0.530211 CCAGGCTGCTCTCATCTTCG 60.530 60.000 9.56 0.00 0.00 3.79
24 25 0.459078 CAGGCTGCTCTCATCTTCGA 59.541 55.000 0.00 0.00 0.00 3.71
25 26 1.134877 CAGGCTGCTCTCATCTTCGAA 60.135 52.381 0.00 0.00 0.00 3.71
26 27 1.552337 AGGCTGCTCTCATCTTCGAAA 59.448 47.619 0.00 0.00 0.00 3.46
27 28 1.932511 GGCTGCTCTCATCTTCGAAAG 59.067 52.381 0.00 0.00 0.00 2.62
28 29 2.615869 GCTGCTCTCATCTTCGAAAGT 58.384 47.619 0.00 0.00 0.00 2.66
29 30 3.429547 GGCTGCTCTCATCTTCGAAAGTA 60.430 47.826 0.00 0.00 0.00 2.24
30 31 4.177026 GCTGCTCTCATCTTCGAAAGTAA 58.823 43.478 0.00 0.00 0.00 2.24
31 32 4.627467 GCTGCTCTCATCTTCGAAAGTAAA 59.373 41.667 0.00 0.00 0.00 2.01
32 33 5.120830 GCTGCTCTCATCTTCGAAAGTAAAA 59.879 40.000 0.00 0.00 0.00 1.52
33 34 6.347725 GCTGCTCTCATCTTCGAAAGTAAAAA 60.348 38.462 0.00 0.00 0.00 1.94
34 35 7.121974 TGCTCTCATCTTCGAAAGTAAAAAG 57.878 36.000 0.00 0.00 0.00 2.27
35 36 6.929049 TGCTCTCATCTTCGAAAGTAAAAAGA 59.071 34.615 0.00 0.00 32.69 2.52
36 37 7.095607 TGCTCTCATCTTCGAAAGTAAAAAGAC 60.096 37.037 0.00 0.00 31.05 3.01
37 38 7.095607 GCTCTCATCTTCGAAAGTAAAAAGACA 60.096 37.037 0.00 0.00 31.05 3.41
38 39 8.833231 TCTCATCTTCGAAAGTAAAAAGACAT 57.167 30.769 0.00 0.00 31.05 3.06
39 40 9.273016 TCTCATCTTCGAAAGTAAAAAGACATT 57.727 29.630 0.00 0.00 31.05 2.71
55 56 9.661563 AAAAAGACATTATATACCAGTTCGTCA 57.338 29.630 0.00 0.00 0.00 4.35
56 57 8.873215 AAAGACATTATATACCAGTTCGTCAG 57.127 34.615 0.00 0.00 0.00 3.51
57 58 7.818997 AGACATTATATACCAGTTCGTCAGA 57.181 36.000 0.00 0.00 0.00 3.27
58 59 8.410673 AGACATTATATACCAGTTCGTCAGAT 57.589 34.615 0.00 0.00 0.00 2.90
59 60 9.516546 AGACATTATATACCAGTTCGTCAGATA 57.483 33.333 0.00 0.00 0.00 1.98
60 61 9.776158 GACATTATATACCAGTTCGTCAGATAG 57.224 37.037 0.00 0.00 0.00 2.08
61 62 8.740906 ACATTATATACCAGTTCGTCAGATAGG 58.259 37.037 0.00 0.00 0.00 2.57
101 102 5.369409 AACTAGATAAGCAACCCCTAACC 57.631 43.478 0.00 0.00 0.00 2.85
108 109 1.065418 AGCAACCCCTAACCAGAATCG 60.065 52.381 0.00 0.00 0.00 3.34
109 110 2.017113 GCAACCCCTAACCAGAATCGG 61.017 57.143 0.00 0.00 0.00 4.18
111 112 0.043637 ACCCCTAACCAGAATCGGGA 59.956 55.000 6.40 0.00 37.05 5.14
114 115 2.174854 CCCCTAACCAGAATCGGGAATT 59.825 50.000 6.40 0.00 37.05 2.17
124 125 3.914312 GAATCGGGAATTCTATCAGCGA 58.086 45.455 5.23 0.00 40.62 4.93
140 141 1.409064 AGCGAGTGAAAGCGATGGATA 59.591 47.619 0.00 0.00 38.61 2.59
167 169 1.623811 AGAACAGGTAGCCACGTCAAT 59.376 47.619 0.00 0.00 0.00 2.57
172 174 4.945246 ACAGGTAGCCACGTCAATATTAG 58.055 43.478 0.00 0.00 0.00 1.73
181 183 5.277779 GCCACGTCAATATTAGCATTGCTTA 60.278 40.000 17.71 8.32 40.44 3.09
195 197 4.337555 GCATTGCTTATCTGACTGACCAAT 59.662 41.667 0.16 0.00 0.00 3.16
196 198 5.505324 GCATTGCTTATCTGACTGACCAATC 60.505 44.000 0.16 0.00 0.00 2.67
215 217 6.072673 ACCAATCGGTGTAGAACTTTCATTTC 60.073 38.462 0.00 0.00 46.79 2.17
217 219 5.917541 TCGGTGTAGAACTTTCATTTCAC 57.082 39.130 0.00 0.00 0.00 3.18
220 222 7.383687 TCGGTGTAGAACTTTCATTTCACTAT 58.616 34.615 0.00 0.00 0.00 2.12
222 224 7.330946 CGGTGTAGAACTTTCATTTCACTATGA 59.669 37.037 0.00 0.00 32.87 2.15
250 252 6.686484 ATACTATAGACCAATGACCATGCA 57.314 37.500 6.78 0.00 0.00 3.96
251 253 5.573380 ACTATAGACCAATGACCATGCAT 57.427 39.130 6.78 0.00 0.00 3.96
252 254 5.311265 ACTATAGACCAATGACCATGCATG 58.689 41.667 20.19 20.19 0.00 4.06
253 255 1.108776 AGACCAATGACCATGCATGC 58.891 50.000 21.69 11.82 0.00 4.06
254 256 1.108776 GACCAATGACCATGCATGCT 58.891 50.000 21.69 7.85 0.00 3.79
255 257 2.092267 AGACCAATGACCATGCATGCTA 60.092 45.455 21.69 9.50 0.00 3.49
256 258 2.292569 GACCAATGACCATGCATGCTAG 59.707 50.000 21.69 10.42 0.00 3.42
257 259 2.304092 CCAATGACCATGCATGCTAGT 58.696 47.619 21.69 13.75 0.00 2.57
258 260 3.117926 ACCAATGACCATGCATGCTAGTA 60.118 43.478 21.69 5.57 0.00 1.82
259 261 3.884693 CCAATGACCATGCATGCTAGTAA 59.115 43.478 21.69 7.60 0.00 2.24
260 262 4.023450 CCAATGACCATGCATGCTAGTAAG 60.023 45.833 21.69 8.18 0.00 2.34
261 263 3.912496 TGACCATGCATGCTAGTAAGT 57.088 42.857 21.69 11.49 0.00 2.24
262 264 3.534554 TGACCATGCATGCTAGTAAGTG 58.465 45.455 21.69 6.71 0.00 3.16
263 265 2.874701 GACCATGCATGCTAGTAAGTGG 59.125 50.000 21.69 15.91 0.00 4.00
264 266 2.224606 CCATGCATGCTAGTAAGTGGG 58.775 52.381 21.69 0.00 0.00 4.61
265 267 2.224606 CATGCATGCTAGTAAGTGGGG 58.775 52.381 20.33 0.00 0.00 4.96
266 268 1.285280 TGCATGCTAGTAAGTGGGGT 58.715 50.000 20.33 0.00 0.00 4.95
267 269 1.209504 TGCATGCTAGTAAGTGGGGTC 59.790 52.381 20.33 0.00 0.00 4.46
268 270 1.209504 GCATGCTAGTAAGTGGGGTCA 59.790 52.381 11.37 0.00 0.00 4.02
269 271 2.743183 GCATGCTAGTAAGTGGGGTCAG 60.743 54.545 11.37 0.00 0.00 3.51
270 272 2.320681 TGCTAGTAAGTGGGGTCAGT 57.679 50.000 0.00 0.00 0.00 3.41
271 273 1.899814 TGCTAGTAAGTGGGGTCAGTG 59.100 52.381 0.00 0.00 0.00 3.66
272 274 1.900486 GCTAGTAAGTGGGGTCAGTGT 59.100 52.381 0.00 0.00 0.00 3.55
273 275 2.353803 GCTAGTAAGTGGGGTCAGTGTG 60.354 54.545 0.00 0.00 0.00 3.82
274 276 1.056660 AGTAAGTGGGGTCAGTGTGG 58.943 55.000 0.00 0.00 0.00 4.17
290 292 3.389329 AGTGTGGATATGGATGTCACCTC 59.611 47.826 0.00 0.00 0.00 3.85
293 295 1.276421 GGATATGGATGTCACCTCCCG 59.724 57.143 0.00 0.00 31.32 5.14
295 297 1.119684 TATGGATGTCACCTCCCGTG 58.880 55.000 0.00 0.00 44.50 4.94
302 304 4.143333 CACCTCCCGTGCCGGTAG 62.143 72.222 1.90 6.14 46.80 3.18
305 307 3.528370 CTCCCGTGCCGGTAGGAG 61.528 72.222 14.19 13.23 46.80 3.69
309 311 2.423898 CCGTGCCGGTAGGAGACAT 61.424 63.158 14.19 0.00 42.73 3.06
311 313 0.030369 CGTGCCGGTAGGAGACATAC 59.970 60.000 6.36 0.00 41.02 2.39
312 314 0.388294 GTGCCGGTAGGAGACATACC 59.612 60.000 1.90 0.00 41.02 2.73
313 315 0.032912 TGCCGGTAGGAGACATACCA 60.033 55.000 1.90 0.00 42.45 3.25
315 317 1.272769 GCCGGTAGGAGACATACCATC 59.727 57.143 1.90 0.99 42.45 3.51
316 318 2.594131 CCGGTAGGAGACATACCATCA 58.406 52.381 11.96 0.00 42.45 3.07
317 319 2.296471 CCGGTAGGAGACATACCATCAC 59.704 54.545 11.96 0.00 42.45 3.06
318 320 2.956333 CGGTAGGAGACATACCATCACA 59.044 50.000 11.96 0.00 42.45 3.58
319 321 3.243434 CGGTAGGAGACATACCATCACAC 60.243 52.174 11.96 0.00 42.45 3.82
320 322 3.704566 GGTAGGAGACATACCATCACACA 59.295 47.826 7.57 0.00 42.01 3.72
321 323 4.161565 GGTAGGAGACATACCATCACACAA 59.838 45.833 7.57 0.00 42.01 3.33
322 324 5.163301 GGTAGGAGACATACCATCACACAAT 60.163 44.000 7.57 0.00 42.01 2.71
323 325 6.041637 GGTAGGAGACATACCATCACACAATA 59.958 42.308 7.57 0.00 42.01 1.90
333 335 4.022068 ACCATCACACAATAAAGCACAAGG 60.022 41.667 0.00 0.00 0.00 3.61
336 338 1.269448 ACACAATAAAGCACAAGGGCG 59.731 47.619 0.00 0.00 39.27 6.13
337 339 0.243636 ACAATAAAGCACAAGGGCGC 59.756 50.000 0.00 0.00 39.27 6.53
339 341 1.135024 CAATAAAGCACAAGGGCGCAT 60.135 47.619 10.83 0.00 39.27 4.73
342 344 0.600782 AAAGCACAAGGGCGCATTTG 60.601 50.000 10.83 15.46 39.27 2.32
343 345 2.432972 GCACAAGGGCGCATTTGG 60.433 61.111 21.95 14.07 0.00 3.28
344 346 3.050339 CACAAGGGCGCATTTGGT 58.950 55.556 21.95 6.60 0.00 3.67
345 347 1.367102 CACAAGGGCGCATTTGGTT 59.633 52.632 21.95 4.73 0.00 3.67
346 348 0.600557 CACAAGGGCGCATTTGGTTA 59.399 50.000 21.95 0.00 0.00 2.85
347 349 0.601057 ACAAGGGCGCATTTGGTTAC 59.399 50.000 21.95 0.00 0.00 2.50
348 350 0.887933 CAAGGGCGCATTTGGTTACT 59.112 50.000 10.83 0.00 0.00 2.24
349 351 1.272212 CAAGGGCGCATTTGGTTACTT 59.728 47.619 10.83 0.00 0.00 2.24
350 352 1.627864 AGGGCGCATTTGGTTACTTT 58.372 45.000 10.83 0.00 0.00 2.66
351 353 1.544246 AGGGCGCATTTGGTTACTTTC 59.456 47.619 10.83 0.00 0.00 2.62
352 354 1.544246 GGGCGCATTTGGTTACTTTCT 59.456 47.619 10.83 0.00 0.00 2.52
353 355 2.415491 GGGCGCATTTGGTTACTTTCTC 60.415 50.000 10.83 0.00 0.00 2.87
354 356 2.227865 GGCGCATTTGGTTACTTTCTCA 59.772 45.455 10.83 0.00 0.00 3.27
355 357 3.492313 GCGCATTTGGTTACTTTCTCAG 58.508 45.455 0.30 0.00 0.00 3.35
356 358 3.058224 GCGCATTTGGTTACTTTCTCAGT 60.058 43.478 0.30 0.00 39.87 3.41
357 359 4.466828 CGCATTTGGTTACTTTCTCAGTG 58.533 43.478 0.00 0.00 35.97 3.66
358 360 4.213270 CGCATTTGGTTACTTTCTCAGTGA 59.787 41.667 0.00 0.00 35.97 3.41
359 361 5.277779 CGCATTTGGTTACTTTCTCAGTGAA 60.278 40.000 0.00 0.00 35.97 3.18
360 362 6.145535 GCATTTGGTTACTTTCTCAGTGAAG 58.854 40.000 0.00 0.00 35.97 3.02
361 363 5.751243 TTTGGTTACTTTCTCAGTGAAGC 57.249 39.130 0.00 0.00 35.97 3.86
362 364 4.689612 TGGTTACTTTCTCAGTGAAGCT 57.310 40.909 0.00 0.00 35.97 3.74
363 365 5.036117 TGGTTACTTTCTCAGTGAAGCTT 57.964 39.130 0.00 0.00 35.97 3.74
364 366 4.816385 TGGTTACTTTCTCAGTGAAGCTTG 59.184 41.667 2.10 0.00 35.97 4.01
365 367 4.214332 GGTTACTTTCTCAGTGAAGCTTGG 59.786 45.833 2.10 0.00 35.97 3.61
366 368 3.567478 ACTTTCTCAGTGAAGCTTGGT 57.433 42.857 2.10 0.00 35.89 3.67
367 369 3.891049 ACTTTCTCAGTGAAGCTTGGTT 58.109 40.909 2.10 0.00 35.89 3.67
368 370 4.273318 ACTTTCTCAGTGAAGCTTGGTTT 58.727 39.130 2.10 0.00 35.89 3.27
369 371 5.437060 ACTTTCTCAGTGAAGCTTGGTTTA 58.563 37.500 2.10 0.00 35.89 2.01
370 372 5.529060 ACTTTCTCAGTGAAGCTTGGTTTAG 59.471 40.000 2.10 0.00 35.89 1.85
371 373 3.403038 TCTCAGTGAAGCTTGGTTTAGC 58.597 45.455 2.10 0.00 41.53 3.09
372 374 2.143122 TCAGTGAAGCTTGGTTTAGCG 58.857 47.619 2.10 0.00 45.82 4.26
373 375 1.197721 CAGTGAAGCTTGGTTTAGCGG 59.802 52.381 2.10 0.00 45.82 5.52
374 376 1.071699 AGTGAAGCTTGGTTTAGCGGA 59.928 47.619 2.10 0.00 45.82 5.54
375 377 1.464997 GTGAAGCTTGGTTTAGCGGAG 59.535 52.381 2.10 0.00 45.82 4.63
395 397 6.978338 CGGAGCCTATTTAAGTGTATACAGA 58.022 40.000 5.62 0.00 0.00 3.41
396 398 6.862090 CGGAGCCTATTTAAGTGTATACAGAC 59.138 42.308 5.62 0.00 0.00 3.51
397 399 7.255520 CGGAGCCTATTTAAGTGTATACAGACT 60.256 40.741 5.62 0.00 0.00 3.24
398 400 8.083462 GGAGCCTATTTAAGTGTATACAGACTC 58.917 40.741 5.62 0.00 0.00 3.36
399 401 8.770010 AGCCTATTTAAGTGTATACAGACTCT 57.230 34.615 5.62 0.00 0.00 3.24
400 402 9.203163 AGCCTATTTAAGTGTATACAGACTCTT 57.797 33.333 5.62 8.58 37.09 2.85
401 403 9.250624 GCCTATTTAAGTGTATACAGACTCTTG 57.749 37.037 5.62 0.00 35.41 3.02
402 404 9.250624 CCTATTTAAGTGTATACAGACTCTTGC 57.749 37.037 5.62 0.00 35.41 4.01
406 408 9.803315 TTTAAGTGTATACAGACTCTTGCTATG 57.197 33.333 5.62 0.00 35.41 2.23
407 409 7.411486 AAGTGTATACAGACTCTTGCTATGT 57.589 36.000 5.62 0.00 33.17 2.29
408 410 7.411486 AGTGTATACAGACTCTTGCTATGTT 57.589 36.000 5.62 0.00 0.00 2.71
409 411 7.484975 AGTGTATACAGACTCTTGCTATGTTC 58.515 38.462 5.62 0.00 0.00 3.18
410 412 7.340743 AGTGTATACAGACTCTTGCTATGTTCT 59.659 37.037 5.62 0.00 0.00 3.01
411 413 7.433719 GTGTATACAGACTCTTGCTATGTTCTG 59.566 40.741 5.62 0.00 0.00 3.02
412 414 4.881019 ACAGACTCTTGCTATGTTCTGT 57.119 40.909 5.39 5.39 33.07 3.41
413 415 5.984695 ACAGACTCTTGCTATGTTCTGTA 57.015 39.130 8.50 0.00 35.72 2.74
414 416 6.537453 ACAGACTCTTGCTATGTTCTGTAT 57.463 37.500 8.50 0.00 35.72 2.29
415 417 6.336566 ACAGACTCTTGCTATGTTCTGTATG 58.663 40.000 8.50 0.00 35.72 2.39
416 418 6.071108 ACAGACTCTTGCTATGTTCTGTATGT 60.071 38.462 8.50 0.00 35.72 2.29
417 419 6.475076 CAGACTCTTGCTATGTTCTGTATGTC 59.525 42.308 0.00 0.00 0.00 3.06
418 420 5.344066 ACTCTTGCTATGTTCTGTATGTCG 58.656 41.667 0.00 0.00 0.00 4.35
419 421 5.105716 ACTCTTGCTATGTTCTGTATGTCGT 60.106 40.000 0.00 0.00 0.00 4.34
420 422 5.720202 TCTTGCTATGTTCTGTATGTCGTT 58.280 37.500 0.00 0.00 0.00 3.85
421 423 6.163476 TCTTGCTATGTTCTGTATGTCGTTT 58.837 36.000 0.00 0.00 0.00 3.60
422 424 5.778161 TGCTATGTTCTGTATGTCGTTTG 57.222 39.130 0.00 0.00 0.00 2.93
423 425 4.629634 TGCTATGTTCTGTATGTCGTTTGG 59.370 41.667 0.00 0.00 0.00 3.28
424 426 4.630069 GCTATGTTCTGTATGTCGTTTGGT 59.370 41.667 0.00 0.00 0.00 3.67
425 427 5.121768 GCTATGTTCTGTATGTCGTTTGGTT 59.878 40.000 0.00 0.00 0.00 3.67
426 428 6.348213 GCTATGTTCTGTATGTCGTTTGGTTT 60.348 38.462 0.00 0.00 0.00 3.27
427 429 5.163302 TGTTCTGTATGTCGTTTGGTTTG 57.837 39.130 0.00 0.00 0.00 2.93
428 430 3.889196 TCTGTATGTCGTTTGGTTTGC 57.111 42.857 0.00 0.00 0.00 3.68
429 431 3.472652 TCTGTATGTCGTTTGGTTTGCT 58.527 40.909 0.00 0.00 0.00 3.91
430 432 3.249799 TCTGTATGTCGTTTGGTTTGCTG 59.750 43.478 0.00 0.00 0.00 4.41
431 433 2.287308 TGTATGTCGTTTGGTTTGCTGC 60.287 45.455 0.00 0.00 0.00 5.25
432 434 0.743688 ATGTCGTTTGGTTTGCTGCA 59.256 45.000 0.00 0.00 0.00 4.41
433 435 0.743688 TGTCGTTTGGTTTGCTGCAT 59.256 45.000 1.84 0.00 0.00 3.96
434 436 1.268999 TGTCGTTTGGTTTGCTGCATC 60.269 47.619 1.84 0.00 0.00 3.91
435 437 1.028130 TCGTTTGGTTTGCTGCATCA 58.972 45.000 1.84 0.00 0.00 3.07
436 438 1.406898 TCGTTTGGTTTGCTGCATCAA 59.593 42.857 1.84 0.00 0.00 2.57
437 439 1.788308 CGTTTGGTTTGCTGCATCAAG 59.212 47.619 1.84 0.00 0.00 3.02
438 440 1.528161 GTTTGGTTTGCTGCATCAAGC 59.472 47.619 1.84 8.44 43.82 4.01
439 441 0.033781 TTGGTTTGCTGCATCAAGCC 59.966 50.000 24.28 24.28 44.45 4.35
440 442 0.828762 TGGTTTGCTGCATCAAGCCT 60.829 50.000 28.73 0.00 44.49 4.58
441 443 1.176527 GGTTTGCTGCATCAAGCCTA 58.823 50.000 23.91 0.00 42.02 3.93
442 444 1.545582 GGTTTGCTGCATCAAGCCTAA 59.454 47.619 23.91 0.00 42.02 2.69
443 445 2.599659 GTTTGCTGCATCAAGCCTAAC 58.400 47.619 1.84 0.00 44.83 2.34
444 446 2.205022 TTGCTGCATCAAGCCTAACT 57.795 45.000 1.84 0.00 44.83 2.24
445 447 1.742761 TGCTGCATCAAGCCTAACTC 58.257 50.000 0.00 0.00 44.83 3.01
446 448 0.654683 GCTGCATCAAGCCTAACTCG 59.345 55.000 0.00 0.00 44.83 4.18
447 449 2.009042 GCTGCATCAAGCCTAACTCGT 61.009 52.381 0.00 0.00 44.83 4.18
448 450 2.738643 GCTGCATCAAGCCTAACTCGTA 60.739 50.000 0.00 0.00 44.83 3.43
449 451 3.722147 CTGCATCAAGCCTAACTCGTAT 58.278 45.455 0.00 0.00 44.83 3.06
450 452 4.122776 CTGCATCAAGCCTAACTCGTATT 58.877 43.478 0.00 0.00 44.83 1.89
451 453 4.119862 TGCATCAAGCCTAACTCGTATTC 58.880 43.478 0.00 0.00 44.83 1.75
452 454 4.141937 TGCATCAAGCCTAACTCGTATTCT 60.142 41.667 0.00 0.00 44.83 2.40
453 455 4.446051 GCATCAAGCCTAACTCGTATTCTC 59.554 45.833 0.00 0.00 37.23 2.87
454 456 5.592054 CATCAAGCCTAACTCGTATTCTCA 58.408 41.667 0.00 0.00 0.00 3.27
455 457 5.654603 TCAAGCCTAACTCGTATTCTCAA 57.345 39.130 0.00 0.00 0.00 3.02
456 458 5.408356 TCAAGCCTAACTCGTATTCTCAAC 58.592 41.667 0.00 0.00 0.00 3.18
457 459 4.388378 AGCCTAACTCGTATTCTCAACC 57.612 45.455 0.00 0.00 0.00 3.77
458 460 3.132467 AGCCTAACTCGTATTCTCAACCC 59.868 47.826 0.00 0.00 0.00 4.11
459 461 3.703420 CCTAACTCGTATTCTCAACCCG 58.297 50.000 0.00 0.00 0.00 5.28
460 462 2.005971 AACTCGTATTCTCAACCCGC 57.994 50.000 0.00 0.00 0.00 6.13
461 463 0.179145 ACTCGTATTCTCAACCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
462 464 0.179145 CTCGTATTCTCAACCCGCGT 60.179 55.000 4.92 0.00 0.00 6.01
463 465 0.457166 TCGTATTCTCAACCCGCGTG 60.457 55.000 4.92 0.00 0.00 5.34
464 466 1.418342 CGTATTCTCAACCCGCGTGG 61.418 60.000 8.42 8.42 41.37 4.94
465 467 0.108520 GTATTCTCAACCCGCGTGGA 60.109 55.000 18.79 0.00 37.49 4.02
466 468 0.609151 TATTCTCAACCCGCGTGGAA 59.391 50.000 18.79 1.08 37.49 3.53
467 469 0.250553 ATTCTCAACCCGCGTGGAAA 60.251 50.000 18.79 1.10 37.49 3.13
468 470 0.464013 TTCTCAACCCGCGTGGAAAA 60.464 50.000 18.79 0.00 37.49 2.29
469 471 1.161563 TCTCAACCCGCGTGGAAAAC 61.162 55.000 18.79 0.00 37.49 2.43
481 483 3.813529 GTGGAAAACGGTTGATCTGAG 57.186 47.619 0.00 0.00 0.00 3.35
482 484 2.095718 GTGGAAAACGGTTGATCTGAGC 60.096 50.000 0.00 0.00 0.00 4.26
483 485 1.128692 GGAAAACGGTTGATCTGAGCG 59.871 52.381 16.04 16.04 43.07 5.03
488 490 1.714794 CGGTTGATCTGAGCGTTTCT 58.285 50.000 11.40 0.00 33.70 2.52
489 491 1.656095 CGGTTGATCTGAGCGTTTCTC 59.344 52.381 11.40 0.00 42.23 2.87
490 492 1.656095 GGTTGATCTGAGCGTTTCTCG 59.344 52.381 0.00 0.00 44.86 4.04
491 493 2.596452 GTTGATCTGAGCGTTTCTCGA 58.404 47.619 0.00 0.00 44.86 4.04
492 494 2.551355 TGATCTGAGCGTTTCTCGAG 57.449 50.000 5.93 5.93 44.86 4.04
493 495 2.084546 TGATCTGAGCGTTTCTCGAGA 58.915 47.619 12.08 12.08 44.86 4.04
494 496 2.096657 TGATCTGAGCGTTTCTCGAGAG 59.903 50.000 15.94 5.48 44.86 3.20
495 497 0.169230 TCTGAGCGTTTCTCGAGAGC 59.831 55.000 15.94 15.60 44.86 4.09
496 498 0.800300 CTGAGCGTTTCTCGAGAGCC 60.800 60.000 15.94 9.12 44.86 4.70
497 499 1.213013 GAGCGTTTCTCGAGAGCCA 59.787 57.895 15.94 0.00 42.86 4.75
498 500 0.800300 GAGCGTTTCTCGAGAGCCAG 60.800 60.000 15.94 9.68 42.86 4.85
499 501 1.807573 GCGTTTCTCGAGAGCCAGG 60.808 63.158 15.94 10.34 42.86 4.45
500 502 1.807573 CGTTTCTCGAGAGCCAGGC 60.808 63.158 15.94 1.84 42.86 4.85
501 503 1.594310 GTTTCTCGAGAGCCAGGCT 59.406 57.895 16.12 16.12 43.88 4.58
502 504 0.739112 GTTTCTCGAGAGCCAGGCTG 60.739 60.000 22.26 7.75 39.88 4.85
503 505 1.892819 TTTCTCGAGAGCCAGGCTGG 61.893 60.000 29.44 29.44 39.88 4.85
504 506 2.757508 CTCGAGAGCCAGGCTGGA 60.758 66.667 37.07 14.01 40.96 3.86
505 507 2.283894 TCGAGAGCCAGGCTGGAA 60.284 61.111 37.07 11.05 40.96 3.53
506 508 2.186384 CGAGAGCCAGGCTGGAAG 59.814 66.667 37.07 17.28 40.96 3.46
521 523 4.813296 CTGGAAGCACTTTAAGTTTCGT 57.187 40.909 0.00 0.00 0.00 3.85
522 524 4.527564 CTGGAAGCACTTTAAGTTTCGTG 58.472 43.478 0.00 0.00 0.00 4.35
527 529 2.650608 CACTTTAAGTTTCGTGCAGCC 58.349 47.619 0.00 0.00 0.00 4.85
528 530 1.607148 ACTTTAAGTTTCGTGCAGCCC 59.393 47.619 0.00 0.00 0.00 5.19
529 531 1.606668 CTTTAAGTTTCGTGCAGCCCA 59.393 47.619 0.00 0.00 0.00 5.36
530 532 1.234821 TTAAGTTTCGTGCAGCCCAG 58.765 50.000 0.00 0.00 0.00 4.45
531 533 0.107831 TAAGTTTCGTGCAGCCCAGT 59.892 50.000 0.00 0.00 0.00 4.00
532 534 0.751643 AAGTTTCGTGCAGCCCAGTT 60.752 50.000 0.00 0.00 0.00 3.16
533 535 0.751643 AGTTTCGTGCAGCCCAGTTT 60.752 50.000 0.00 0.00 0.00 2.66
534 536 0.317854 GTTTCGTGCAGCCCAGTTTC 60.318 55.000 0.00 0.00 0.00 2.78
535 537 0.465460 TTTCGTGCAGCCCAGTTTCT 60.465 50.000 0.00 0.00 0.00 2.52
536 538 0.394938 TTCGTGCAGCCCAGTTTCTA 59.605 50.000 0.00 0.00 0.00 2.10
537 539 0.320421 TCGTGCAGCCCAGTTTCTAC 60.320 55.000 0.00 0.00 0.00 2.59
538 540 0.602638 CGTGCAGCCCAGTTTCTACA 60.603 55.000 0.00 0.00 0.00 2.74
539 541 1.826385 GTGCAGCCCAGTTTCTACAT 58.174 50.000 0.00 0.00 0.00 2.29
540 542 2.676750 CGTGCAGCCCAGTTTCTACATA 60.677 50.000 0.00 0.00 0.00 2.29
541 543 2.678336 GTGCAGCCCAGTTTCTACATAC 59.322 50.000 0.00 0.00 0.00 2.39
542 544 2.304470 TGCAGCCCAGTTTCTACATACA 59.696 45.455 0.00 0.00 0.00 2.29
543 545 3.244735 TGCAGCCCAGTTTCTACATACAA 60.245 43.478 0.00 0.00 0.00 2.41
544 546 3.375299 GCAGCCCAGTTTCTACATACAAG 59.625 47.826 0.00 0.00 0.00 3.16
545 547 3.375299 CAGCCCAGTTTCTACATACAAGC 59.625 47.826 0.00 0.00 0.00 4.01
546 548 3.264450 AGCCCAGTTTCTACATACAAGCT 59.736 43.478 0.00 0.00 0.00 3.74
547 549 4.469945 AGCCCAGTTTCTACATACAAGCTA 59.530 41.667 0.00 0.00 0.00 3.32
548 550 4.811557 GCCCAGTTTCTACATACAAGCTAG 59.188 45.833 0.00 0.00 0.00 3.42
549 551 5.395324 GCCCAGTTTCTACATACAAGCTAGA 60.395 44.000 0.00 0.00 0.00 2.43
550 552 6.043411 CCCAGTTTCTACATACAAGCTAGAC 58.957 44.000 0.00 0.00 0.00 2.59
551 553 6.351033 CCCAGTTTCTACATACAAGCTAGACA 60.351 42.308 0.00 0.00 0.00 3.41
552 554 7.097192 CCAGTTTCTACATACAAGCTAGACAA 58.903 38.462 0.00 0.00 0.00 3.18
553 555 7.063544 CCAGTTTCTACATACAAGCTAGACAAC 59.936 40.741 0.00 0.00 0.00 3.32
554 556 7.063544 CAGTTTCTACATACAAGCTAGACAACC 59.936 40.741 0.00 0.00 0.00 3.77
555 557 6.599356 TTCTACATACAAGCTAGACAACCA 57.401 37.500 0.00 0.00 0.00 3.67
556 558 6.599356 TCTACATACAAGCTAGACAACCAA 57.401 37.500 0.00 0.00 0.00 3.67
557 559 7.182817 TCTACATACAAGCTAGACAACCAAT 57.817 36.000 0.00 0.00 0.00 3.16
558 560 7.265673 TCTACATACAAGCTAGACAACCAATC 58.734 38.462 0.00 0.00 0.00 2.67
559 561 5.804639 ACATACAAGCTAGACAACCAATCA 58.195 37.500 0.00 0.00 0.00 2.57
560 562 6.237901 ACATACAAGCTAGACAACCAATCAA 58.762 36.000 0.00 0.00 0.00 2.57
561 563 6.149474 ACATACAAGCTAGACAACCAATCAAC 59.851 38.462 0.00 0.00 0.00 3.18
562 564 4.718961 ACAAGCTAGACAACCAATCAACT 58.281 39.130 0.00 0.00 0.00 3.16
563 565 4.757149 ACAAGCTAGACAACCAATCAACTC 59.243 41.667 0.00 0.00 0.00 3.01
564 566 4.623932 AGCTAGACAACCAATCAACTCA 57.376 40.909 0.00 0.00 0.00 3.41
565 567 4.319177 AGCTAGACAACCAATCAACTCAC 58.681 43.478 0.00 0.00 0.00 3.51
566 568 4.040952 AGCTAGACAACCAATCAACTCACT 59.959 41.667 0.00 0.00 0.00 3.41
567 569 5.246203 AGCTAGACAACCAATCAACTCACTA 59.754 40.000 0.00 0.00 0.00 2.74
568 570 6.070538 AGCTAGACAACCAATCAACTCACTAT 60.071 38.462 0.00 0.00 0.00 2.12
569 571 6.595716 GCTAGACAACCAATCAACTCACTATT 59.404 38.462 0.00 0.00 0.00 1.73
570 572 7.119846 GCTAGACAACCAATCAACTCACTATTT 59.880 37.037 0.00 0.00 0.00 1.40
571 573 9.653287 CTAGACAACCAATCAACTCACTATTTA 57.347 33.333 0.00 0.00 0.00 1.40
572 574 8.918202 AGACAACCAATCAACTCACTATTTAA 57.082 30.769 0.00 0.00 0.00 1.52
573 575 8.784043 AGACAACCAATCAACTCACTATTTAAC 58.216 33.333 0.00 0.00 0.00 2.01
574 576 7.882179 ACAACCAATCAACTCACTATTTAACC 58.118 34.615 0.00 0.00 0.00 2.85
575 577 7.039993 ACAACCAATCAACTCACTATTTAACCC 60.040 37.037 0.00 0.00 0.00 4.11
576 578 6.548321 ACCAATCAACTCACTATTTAACCCA 58.452 36.000 0.00 0.00 0.00 4.51
577 579 7.182060 ACCAATCAACTCACTATTTAACCCAT 58.818 34.615 0.00 0.00 0.00 4.00
578 580 7.122650 ACCAATCAACTCACTATTTAACCCATG 59.877 37.037 0.00 0.00 0.00 3.66
579 581 7.339212 CCAATCAACTCACTATTTAACCCATGA 59.661 37.037 0.00 0.00 0.00 3.07
580 582 8.400947 CAATCAACTCACTATTTAACCCATGAG 58.599 37.037 0.00 0.00 39.56 2.90
581 583 7.252612 TCAACTCACTATTTAACCCATGAGA 57.747 36.000 6.08 0.00 37.57 3.27
582 584 7.331026 TCAACTCACTATTTAACCCATGAGAG 58.669 38.462 6.08 0.00 37.57 3.20
583 585 7.180229 TCAACTCACTATTTAACCCATGAGAGA 59.820 37.037 6.08 1.57 37.57 3.10
584 586 6.879400 ACTCACTATTTAACCCATGAGAGAC 58.121 40.000 6.08 0.00 37.57 3.36
585 587 6.670027 ACTCACTATTTAACCCATGAGAGACT 59.330 38.462 6.08 0.00 37.57 3.24
586 588 6.878317 TCACTATTTAACCCATGAGAGACTG 58.122 40.000 0.00 0.00 0.00 3.51
587 589 6.051717 CACTATTTAACCCATGAGAGACTGG 58.948 44.000 0.00 0.00 0.00 4.00
588 590 5.726793 ACTATTTAACCCATGAGAGACTGGT 59.273 40.000 0.00 0.00 0.00 4.00
589 591 4.993705 TTTAACCCATGAGAGACTGGTT 57.006 40.909 0.00 0.00 41.85 3.67
590 592 2.867109 AACCCATGAGAGACTGGTTG 57.133 50.000 0.00 0.00 37.88 3.77
591 593 0.987294 ACCCATGAGAGACTGGTTGG 59.013 55.000 0.00 0.00 0.00 3.77
592 594 0.254178 CCCATGAGAGACTGGTTGGG 59.746 60.000 0.00 0.00 38.01 4.12
593 595 0.393537 CCATGAGAGACTGGTTGGGC 60.394 60.000 0.00 0.00 0.00 5.36
594 596 0.617413 CATGAGAGACTGGTTGGGCT 59.383 55.000 0.00 0.00 0.00 5.19
595 597 1.004044 CATGAGAGACTGGTTGGGCTT 59.996 52.381 0.00 0.00 0.00 4.35
596 598 0.397941 TGAGAGACTGGTTGGGCTTG 59.602 55.000 0.00 0.00 0.00 4.01
597 599 0.687354 GAGAGACTGGTTGGGCTTGA 59.313 55.000 0.00 0.00 0.00 3.02
598 600 1.280421 GAGAGACTGGTTGGGCTTGAT 59.720 52.381 0.00 0.00 0.00 2.57
599 601 1.004044 AGAGACTGGTTGGGCTTGATG 59.996 52.381 0.00 0.00 0.00 3.07
600 602 0.610232 AGACTGGTTGGGCTTGATGC 60.610 55.000 0.00 0.00 41.94 3.91
601 603 0.895100 GACTGGTTGGGCTTGATGCA 60.895 55.000 0.00 0.00 45.15 3.96
602 604 0.896940 ACTGGTTGGGCTTGATGCAG 60.897 55.000 0.00 0.00 45.15 4.41
603 605 2.221906 CTGGTTGGGCTTGATGCAGC 62.222 60.000 0.00 0.00 45.15 5.25
609 611 4.643795 GCTTGATGCAGCCTACCA 57.356 55.556 0.00 0.00 42.31 3.25
610 612 2.872408 GCTTGATGCAGCCTACCAA 58.128 52.632 0.00 0.00 42.31 3.67
611 613 1.176527 GCTTGATGCAGCCTACCAAA 58.823 50.000 0.00 0.00 42.31 3.28
612 614 1.135286 GCTTGATGCAGCCTACCAAAC 60.135 52.381 0.00 0.00 42.31 2.93
613 615 1.131126 CTTGATGCAGCCTACCAAACG 59.869 52.381 0.00 0.00 0.00 3.60
614 616 1.305219 TGATGCAGCCTACCAAACGC 61.305 55.000 0.00 0.00 0.00 4.84
615 617 2.309764 GATGCAGCCTACCAAACGCG 62.310 60.000 3.53 3.53 0.00 6.01
616 618 3.047877 GCAGCCTACCAAACGCGT 61.048 61.111 5.58 5.58 0.00 6.01
617 619 3.023591 GCAGCCTACCAAACGCGTC 62.024 63.158 14.44 0.00 0.00 5.19
618 620 2.047560 AGCCTACCAAACGCGTCC 60.048 61.111 14.44 0.00 0.00 4.79
619 621 2.357760 GCCTACCAAACGCGTCCA 60.358 61.111 14.44 0.00 0.00 4.02
620 622 2.388232 GCCTACCAAACGCGTCCAG 61.388 63.158 14.44 6.50 0.00 3.86
621 623 2.388232 CCTACCAAACGCGTCCAGC 61.388 63.158 14.44 0.00 43.95 4.85
641 643 4.083581 GCGCTTGCTTGAATTCTAAAGA 57.916 40.909 7.05 0.00 35.07 2.52
642 644 4.475944 GCGCTTGCTTGAATTCTAAAGAA 58.524 39.130 7.05 0.00 35.44 2.52
643 645 4.917415 GCGCTTGCTTGAATTCTAAAGAAA 59.083 37.500 7.05 3.15 34.95 2.52
658 660 1.772182 AGAAAGAGAGCACGTGAACG 58.228 50.000 22.23 0.40 46.33 3.95
660 662 1.548973 AAAGAGAGCACGTGAACGCG 61.549 55.000 22.23 3.53 44.43 6.01
668 670 3.082628 CGTGAACGCGCCAAAACG 61.083 61.111 5.73 5.98 0.00 3.60
669 671 2.023601 GTGAACGCGCCAAAACGT 59.976 55.556 5.73 0.00 46.07 3.99
672 674 0.042013 TGAACGCGCCAAAACGTAAG 60.042 50.000 5.73 0.00 42.68 2.34
699 704 1.160137 GGTGTGGATGAGACTGCAAC 58.840 55.000 0.00 0.00 0.00 4.17
700 705 1.543208 GGTGTGGATGAGACTGCAACA 60.543 52.381 0.00 0.00 0.00 3.33
701 706 2.430465 GTGTGGATGAGACTGCAACAT 58.570 47.619 0.00 0.00 0.00 2.71
704 709 3.261643 TGTGGATGAGACTGCAACATAGT 59.738 43.478 0.00 0.00 0.00 2.12
726 731 1.995991 CGCGATCGTGGTAAGTTGG 59.004 57.895 20.77 0.00 0.00 3.77
769 774 4.139786 ACAAGTCAAAGTCAGACATGCAT 58.860 39.130 2.66 0.00 38.02 3.96
777 782 1.062587 GTCAGACATGCATTGCGTACC 59.937 52.381 2.41 0.00 0.00 3.34
790 799 2.348998 GTACCTGCAGCAGCCTGT 59.651 61.111 17.81 12.12 41.26 4.00
801 810 1.949525 AGCAGCCTGTGTGTAAACAAG 59.050 47.619 0.00 0.00 0.00 3.16
807 816 2.034558 CCTGTGTGTAAACAAGGGCAAG 59.965 50.000 6.44 0.00 0.00 4.01
809 818 1.339929 GTGTGTAAACAAGGGCAAGGG 59.660 52.381 0.00 0.00 0.00 3.95
811 820 0.105964 TGTAAACAAGGGCAAGGGCA 60.106 50.000 0.00 0.00 43.71 5.36
812 821 0.603065 GTAAACAAGGGCAAGGGCAG 59.397 55.000 0.00 0.00 43.71 4.85
813 822 0.187361 TAAACAAGGGCAAGGGCAGT 59.813 50.000 0.00 0.00 43.71 4.40
814 823 1.402107 AAACAAGGGCAAGGGCAGTG 61.402 55.000 0.00 0.00 43.71 3.66
815 824 2.115910 CAAGGGCAAGGGCAGTGA 59.884 61.111 0.00 0.00 43.71 3.41
816 825 2.116125 AAGGGCAAGGGCAGTGAC 59.884 61.111 0.00 0.00 43.71 3.67
817 826 2.464403 AAGGGCAAGGGCAGTGACT 61.464 57.895 0.00 0.00 43.71 3.41
818 827 2.674380 GGGCAAGGGCAGTGACTG 60.674 66.667 8.52 8.52 43.71 3.51
819 828 2.674380 GGCAAGGGCAGTGACTGG 60.674 66.667 15.24 0.00 43.71 4.00
839 848 2.141517 GCTGATAGCGTGCATTCTCAT 58.858 47.619 0.00 0.00 0.00 2.90
924 938 3.038417 GCCTCGGCGATCAATCCG 61.038 66.667 11.27 10.70 46.52 4.18
980 1002 0.753262 CCGCCCAGCTATAGACAAGT 59.247 55.000 3.21 0.00 0.00 3.16
1146 1168 1.880340 CGCCAAGCAGACGGAGATC 60.880 63.158 0.00 0.00 0.00 2.75
1198 1267 1.287041 ACGTGAGTCGATCGTCGTGA 61.287 55.000 15.94 0.00 44.19 4.35
1232 1301 7.071273 TCTCCTCTCCTACGGGAATTAATAAA 58.929 38.462 0.00 0.00 41.69 1.40
1286 1360 3.197549 TGGACTGCTGATGCTTATGTGTA 59.802 43.478 0.00 0.00 40.48 2.90
1299 1373 4.336433 GCTTATGTGTACCCTGTCTACGTA 59.664 45.833 0.00 0.00 0.00 3.57
1305 1379 3.696051 TGTACCCTGTCTACGTATGGTTC 59.304 47.826 0.00 0.00 0.00 3.62
1319 1393 4.441415 CGTATGGTTCGCAGTTATCTTCTC 59.559 45.833 0.00 0.00 0.00 2.87
1458 1544 6.100668 GTGGTGAGTATCTTCTACCTTGAAC 58.899 44.000 0.00 0.00 34.92 3.18
1495 1584 4.569180 AGTTGCACGCAGGCCACT 62.569 61.111 5.01 0.00 35.19 4.00
1508 1597 0.802494 GGCCACTGGTTGATGTAACG 59.198 55.000 0.00 0.00 40.28 3.18
1516 1605 5.463392 CACTGGTTGATGTAACGATCCTATG 59.537 44.000 0.00 0.00 40.28 2.23
1518 1607 5.356426 TGGTTGATGTAACGATCCTATGTG 58.644 41.667 0.00 0.00 40.28 3.21
1806 1903 1.066929 GGCTGGCGGACAAATTTCATT 60.067 47.619 0.00 0.00 0.00 2.57
1845 1942 1.372128 GGCTTTGGTGAGCTTTGCG 60.372 57.895 0.00 0.00 42.32 4.85
1918 2031 4.584743 AGTGCTCTCCGATATGTTCATGTA 59.415 41.667 0.00 0.00 0.00 2.29
1954 2067 9.745880 TTTAAACTTGTTTGTTTCTACAACACA 57.254 25.926 8.79 0.00 43.66 3.72
2006 2119 2.742053 CGGTCAAAATCACGGTTCTGAT 59.258 45.455 0.00 0.00 31.84 2.90
2078 2197 2.221169 GACCATTTGCTATCGCCATCA 58.779 47.619 0.00 0.00 34.43 3.07
2082 2201 2.936919 TTTGCTATCGCCATCATCCT 57.063 45.000 0.00 0.00 34.43 3.24
2084 2203 1.341080 TGCTATCGCCATCATCCTCA 58.659 50.000 0.00 0.00 34.43 3.86
2085 2204 1.274447 TGCTATCGCCATCATCCTCAG 59.726 52.381 0.00 0.00 34.43 3.35
2105 2224 4.881273 TCAGCGGTAGGATTTAACGTACTA 59.119 41.667 0.00 0.00 33.46 1.82
2132 2251 4.466370 CCAGGATCTATGGCGGTAGAAATA 59.534 45.833 4.83 0.00 34.59 1.40
2144 2263 3.484649 CGGTAGAAATATGGTCGTTGTCG 59.515 47.826 0.00 0.00 38.55 4.35
2169 2288 1.677576 ACTCGTTGACGTGGACAAGTA 59.322 47.619 0.00 0.00 40.80 2.24
2186 2305 6.371825 GGACAAGTAGCTAGCACATTAAAACT 59.628 38.462 18.83 4.11 0.00 2.66
2189 2308 9.449719 ACAAGTAGCTAGCACATTAAAACTTAT 57.550 29.630 18.83 0.08 0.00 1.73
2216 2335 3.870633 GTCCTTGACGGTAGACATCTT 57.129 47.619 0.00 0.00 0.00 2.40
2242 2361 2.292257 GGGTAAGAGATTGGGGGCTTTT 60.292 50.000 0.00 0.00 0.00 2.27
2306 2425 4.202295 GCGGTAGGGTACTAAATTTAGCCT 60.202 45.833 22.45 21.15 46.78 4.58
2312 2432 7.186570 AGGGTACTAAATTTAGCCTAAACGA 57.813 36.000 22.45 0.00 44.06 3.85
2328 2448 6.020041 GCCTAAACGATACTAAAAGTTCTCGG 60.020 42.308 13.01 0.00 36.85 4.63
2330 2450 7.919621 CCTAAACGATACTAAAAGTTCTCGGAT 59.080 37.037 13.01 6.68 36.85 4.18
2430 2551 2.770164 ACCATTCTGACTAGCACACC 57.230 50.000 0.00 0.00 0.00 4.16
2431 2552 1.066858 ACCATTCTGACTAGCACACCG 60.067 52.381 0.00 0.00 0.00 4.94
2433 2554 2.612972 CCATTCTGACTAGCACACCGTT 60.613 50.000 0.00 0.00 0.00 4.44
2434 2555 2.148916 TTCTGACTAGCACACCGTTG 57.851 50.000 0.00 0.00 0.00 4.10
2435 2556 1.324383 TCTGACTAGCACACCGTTGA 58.676 50.000 0.00 0.00 0.00 3.18
2436 2557 1.000607 TCTGACTAGCACACCGTTGAC 60.001 52.381 0.00 0.00 0.00 3.18
2437 2558 0.747852 TGACTAGCACACCGTTGACA 59.252 50.000 0.00 0.00 0.00 3.58
2438 2559 1.343142 TGACTAGCACACCGTTGACAT 59.657 47.619 0.00 0.00 0.00 3.06
2439 2560 1.993370 GACTAGCACACCGTTGACATC 59.007 52.381 0.00 0.00 0.00 3.06
2440 2561 1.343142 ACTAGCACACCGTTGACATCA 59.657 47.619 0.00 0.00 0.00 3.07
2441 2562 2.224185 ACTAGCACACCGTTGACATCAA 60.224 45.455 0.00 0.00 0.00 2.57
2442 2563 1.674359 AGCACACCGTTGACATCAAA 58.326 45.000 0.00 0.00 37.63 2.69
2443 2564 2.229792 AGCACACCGTTGACATCAAAT 58.770 42.857 0.00 0.00 37.63 2.32
2444 2565 3.407698 AGCACACCGTTGACATCAAATA 58.592 40.909 0.00 0.00 37.63 1.40
2445 2566 3.818210 AGCACACCGTTGACATCAAATAA 59.182 39.130 0.00 0.00 37.63 1.40
2446 2567 3.911964 GCACACCGTTGACATCAAATAAC 59.088 43.478 0.00 0.00 37.63 1.89
2447 2568 4.555708 GCACACCGTTGACATCAAATAACA 60.556 41.667 0.00 0.00 37.63 2.41
2448 2569 5.515184 CACACCGTTGACATCAAATAACAA 58.485 37.500 0.00 0.00 37.63 2.83
2449 2570 6.148948 CACACCGTTGACATCAAATAACAAT 58.851 36.000 0.00 0.00 37.63 2.71
2450 2571 7.301789 CACACCGTTGACATCAAATAACAATA 58.698 34.615 0.00 0.00 37.63 1.90
2451 2572 7.967854 CACACCGTTGACATCAAATAACAATAT 59.032 33.333 0.00 0.00 37.63 1.28
2452 2573 9.168451 ACACCGTTGACATCAAATAACAATATA 57.832 29.630 0.00 0.00 37.63 0.86
2453 2574 9.995957 CACCGTTGACATCAAATAACAATATAA 57.004 29.630 0.00 0.00 37.63 0.98
2507 2683 6.872585 ACCATAACATTCAAATTCCACCAT 57.127 33.333 0.00 0.00 0.00 3.55
2567 2743 9.912634 CAAATAGTTCAACATACCAAGTTCAAT 57.087 29.630 0.00 0.00 0.00 2.57
2575 2751 9.599866 TCAACATACCAAGTTCAATATAGAGTG 57.400 33.333 0.00 0.00 0.00 3.51
2576 2752 9.383519 CAACATACCAAGTTCAATATAGAGTGT 57.616 33.333 0.00 0.00 0.00 3.55
2577 2753 9.959721 AACATACCAAGTTCAATATAGAGTGTT 57.040 29.630 0.00 0.00 0.00 3.32
2578 2754 9.601217 ACATACCAAGTTCAATATAGAGTGTTC 57.399 33.333 0.00 0.00 0.00 3.18
2579 2755 9.599866 CATACCAAGTTCAATATAGAGTGTTCA 57.400 33.333 0.00 0.00 0.00 3.18
2581 2757 8.324163 ACCAAGTTCAATATAGAGTGTTCAAC 57.676 34.615 0.00 0.00 0.00 3.18
2582 2758 7.936847 ACCAAGTTCAATATAGAGTGTTCAACA 59.063 33.333 0.00 0.00 0.00 3.33
2583 2759 8.950210 CCAAGTTCAATATAGAGTGTTCAACAT 58.050 33.333 0.00 0.00 0.00 2.71
2586 2762 9.601217 AGTTCAATATAGAGTGTTCAACATACC 57.399 33.333 0.00 0.00 0.00 2.73
2587 2763 9.378551 GTTCAATATAGAGTGTTCAACATACCA 57.621 33.333 0.00 0.00 0.00 3.25
2588 2764 9.952030 TTCAATATAGAGTGTTCAACATACCAA 57.048 29.630 0.00 0.00 0.00 3.67
2589 2765 9.599866 TCAATATAGAGTGTTCAACATACCAAG 57.400 33.333 0.00 0.00 0.00 3.61
2590 2766 9.383519 CAATATAGAGTGTTCAACATACCAAGT 57.616 33.333 0.00 0.00 0.00 3.16
2591 2767 9.959721 AATATAGAGTGTTCAACATACCAAGTT 57.040 29.630 0.00 0.00 0.00 2.66
2592 2768 7.907214 ATAGAGTGTTCAACATACCAAGTTC 57.093 36.000 0.00 0.00 0.00 3.01
2593 2769 5.680619 AGAGTGTTCAACATACCAAGTTCA 58.319 37.500 0.00 0.00 0.00 3.18
2623 2799 6.772716 AGAGTGTTCAACATACCAAGTTCAAT 59.227 34.615 0.00 0.00 0.00 2.57
2635 2811 5.296748 ACCAAGTTCAATGCAACCAAATAC 58.703 37.500 0.00 0.00 0.00 1.89
2644 2820 6.491745 TCAATGCAACCAAATACAAGGTTCTA 59.508 34.615 0.00 0.00 45.93 2.10
2693 2869 6.447084 TCCATATTACTTTCTTCCCCTCTTGT 59.553 38.462 0.00 0.00 0.00 3.16
2718 2894 0.873743 CGATCCTCGGCTCTCTTTGC 60.874 60.000 0.00 0.00 36.00 3.68
2720 2896 1.608717 ATCCTCGGCTCTCTTTGCGT 61.609 55.000 0.00 0.00 0.00 5.24
2725 2901 1.004440 GGCTCTCTTTGCGTGGTCT 60.004 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.203181 GATGAGAGCAGCCTGGGC 60.203 66.667 3.00 3.00 42.33 5.36
3 4 0.179051 GAAGATGAGAGCAGCCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
4 5 0.530211 CGAAGATGAGAGCAGCCTGG 60.530 60.000 0.00 0.00 0.00 4.45
5 6 0.459078 TCGAAGATGAGAGCAGCCTG 59.541 55.000 0.00 0.00 0.00 4.85
8 9 2.615869 ACTTTCGAAGATGAGAGCAGC 58.384 47.619 0.00 0.00 35.04 5.25
9 10 6.712241 TTTTACTTTCGAAGATGAGAGCAG 57.288 37.500 0.00 0.00 35.04 4.24
10 11 6.929049 TCTTTTTACTTTCGAAGATGAGAGCA 59.071 34.615 0.00 0.00 35.04 4.26
11 12 7.095607 TGTCTTTTTACTTTCGAAGATGAGAGC 60.096 37.037 0.00 0.00 35.04 4.09
12 13 8.299262 TGTCTTTTTACTTTCGAAGATGAGAG 57.701 34.615 0.00 0.00 35.04 3.20
13 14 8.833231 ATGTCTTTTTACTTTCGAAGATGAGA 57.167 30.769 0.00 0.00 35.04 3.27
29 30 9.661563 TGACGAACTGGTATATAATGTCTTTTT 57.338 29.630 0.00 0.00 0.00 1.94
30 31 9.314321 CTGACGAACTGGTATATAATGTCTTTT 57.686 33.333 0.00 0.00 0.00 2.27
31 32 8.692710 TCTGACGAACTGGTATATAATGTCTTT 58.307 33.333 0.00 0.00 0.00 2.52
32 33 8.234136 TCTGACGAACTGGTATATAATGTCTT 57.766 34.615 0.00 0.00 0.00 3.01
33 34 7.818997 TCTGACGAACTGGTATATAATGTCT 57.181 36.000 0.00 0.00 0.00 3.41
34 35 9.776158 CTATCTGACGAACTGGTATATAATGTC 57.224 37.037 0.00 0.00 0.00 3.06
35 36 8.740906 CCTATCTGACGAACTGGTATATAATGT 58.259 37.037 0.00 0.00 0.00 2.71
36 37 8.191446 CCCTATCTGACGAACTGGTATATAATG 58.809 40.741 0.00 0.00 0.00 1.90
37 38 7.147880 GCCCTATCTGACGAACTGGTATATAAT 60.148 40.741 0.00 0.00 0.00 1.28
38 39 6.152323 GCCCTATCTGACGAACTGGTATATAA 59.848 42.308 0.00 0.00 0.00 0.98
39 40 5.651139 GCCCTATCTGACGAACTGGTATATA 59.349 44.000 0.00 0.00 0.00 0.86
40 41 4.463186 GCCCTATCTGACGAACTGGTATAT 59.537 45.833 0.00 0.00 0.00 0.86
41 42 3.825014 GCCCTATCTGACGAACTGGTATA 59.175 47.826 0.00 0.00 0.00 1.47
42 43 2.628657 GCCCTATCTGACGAACTGGTAT 59.371 50.000 0.00 0.00 0.00 2.73
43 44 2.029623 GCCCTATCTGACGAACTGGTA 58.970 52.381 0.00 0.00 0.00 3.25
44 45 0.824759 GCCCTATCTGACGAACTGGT 59.175 55.000 0.00 0.00 0.00 4.00
45 46 0.824109 TGCCCTATCTGACGAACTGG 59.176 55.000 0.00 0.00 0.00 4.00
46 47 1.799181 CGTGCCCTATCTGACGAACTG 60.799 57.143 0.00 0.00 33.64 3.16
47 48 0.456221 CGTGCCCTATCTGACGAACT 59.544 55.000 0.00 0.00 33.64 3.01
48 49 0.172803 ACGTGCCCTATCTGACGAAC 59.827 55.000 0.00 0.00 35.77 3.95
49 50 0.892755 AACGTGCCCTATCTGACGAA 59.107 50.000 0.00 0.00 35.77 3.85
50 51 0.172578 CAACGTGCCCTATCTGACGA 59.827 55.000 0.00 0.00 35.77 4.20
51 52 0.172578 TCAACGTGCCCTATCTGACG 59.827 55.000 0.00 0.00 37.82 4.35
52 53 1.204941 AGTCAACGTGCCCTATCTGAC 59.795 52.381 4.91 4.91 34.69 3.51
53 54 1.557099 AGTCAACGTGCCCTATCTGA 58.443 50.000 0.00 0.00 0.00 3.27
54 55 3.187700 GTTAGTCAACGTGCCCTATCTG 58.812 50.000 0.00 0.00 0.00 2.90
55 56 2.829720 TGTTAGTCAACGTGCCCTATCT 59.170 45.455 0.00 0.00 37.48 1.98
56 57 2.928116 GTGTTAGTCAACGTGCCCTATC 59.072 50.000 0.00 0.00 37.48 2.08
57 58 2.300723 TGTGTTAGTCAACGTGCCCTAT 59.699 45.455 0.00 0.00 37.48 2.57
58 59 1.687660 TGTGTTAGTCAACGTGCCCTA 59.312 47.619 0.00 0.00 37.48 3.53
59 60 0.466543 TGTGTTAGTCAACGTGCCCT 59.533 50.000 0.00 0.00 37.48 5.19
60 61 1.301423 TTGTGTTAGTCAACGTGCCC 58.699 50.000 0.00 0.00 37.48 5.36
61 62 2.353579 AGTTTGTGTTAGTCAACGTGCC 59.646 45.455 0.00 0.00 37.48 5.01
108 109 3.735237 TCACTCGCTGATAGAATTCCC 57.265 47.619 0.65 0.00 0.00 3.97
109 110 4.025313 GCTTTCACTCGCTGATAGAATTCC 60.025 45.833 0.65 0.00 31.33 3.01
111 112 3.553511 CGCTTTCACTCGCTGATAGAATT 59.446 43.478 5.10 0.00 31.33 2.17
114 115 1.743394 TCGCTTTCACTCGCTGATAGA 59.257 47.619 5.10 0.00 31.33 1.98
116 117 2.463876 CATCGCTTTCACTCGCTGATA 58.536 47.619 0.00 0.00 0.00 2.15
120 121 0.176680 ATCCATCGCTTTCACTCGCT 59.823 50.000 0.00 0.00 0.00 4.93
124 125 5.185454 TCAAATGTATCCATCGCTTTCACT 58.815 37.500 0.00 0.00 0.00 3.41
140 141 3.412386 GTGGCTACCTGTTCTCAAATGT 58.588 45.455 0.00 0.00 0.00 2.71
145 147 0.601558 GACGTGGCTACCTGTTCTCA 59.398 55.000 0.00 0.00 0.00 3.27
154 156 5.679906 CAATGCTAATATTGACGTGGCTAC 58.320 41.667 0.00 0.00 39.79 3.58
167 169 6.931281 GGTCAGTCAGATAAGCAATGCTAATA 59.069 38.462 8.68 0.00 38.25 0.98
172 174 3.273434 TGGTCAGTCAGATAAGCAATGC 58.727 45.455 0.00 0.00 0.00 3.56
195 197 5.607477 AGTGAAATGAAAGTTCTACACCGA 58.393 37.500 0.00 0.00 42.30 4.69
196 198 5.924475 AGTGAAATGAAAGTTCTACACCG 57.076 39.130 0.00 0.00 42.30 4.94
224 226 8.825774 TGCATGGTCATTGGTCTATAGTATATT 58.174 33.333 0.00 0.00 0.00 1.28
225 227 8.379428 TGCATGGTCATTGGTCTATAGTATAT 57.621 34.615 0.00 0.00 0.00 0.86
226 228 7.790782 TGCATGGTCATTGGTCTATAGTATA 57.209 36.000 0.00 0.00 0.00 1.47
227 229 6.686484 TGCATGGTCATTGGTCTATAGTAT 57.314 37.500 0.00 0.00 0.00 2.12
228 230 6.466812 CATGCATGGTCATTGGTCTATAGTA 58.533 40.000 19.40 0.00 0.00 1.82
229 231 5.311265 CATGCATGGTCATTGGTCTATAGT 58.689 41.667 19.40 0.00 0.00 2.12
230 232 4.155462 GCATGCATGGTCATTGGTCTATAG 59.845 45.833 27.34 0.00 0.00 1.31
231 233 4.074259 GCATGCATGGTCATTGGTCTATA 58.926 43.478 27.34 0.00 0.00 1.31
232 234 2.889045 GCATGCATGGTCATTGGTCTAT 59.111 45.455 27.34 0.00 0.00 1.98
233 235 2.092267 AGCATGCATGGTCATTGGTCTA 60.092 45.455 25.20 0.00 32.13 2.59
234 236 1.108776 GCATGCATGGTCATTGGTCT 58.891 50.000 27.34 0.00 0.00 3.85
235 237 1.108776 AGCATGCATGGTCATTGGTC 58.891 50.000 25.20 6.32 32.13 4.02
236 238 2.304092 CTAGCATGCATGGTCATTGGT 58.696 47.619 33.01 12.71 39.52 3.67
237 239 2.304092 ACTAGCATGCATGGTCATTGG 58.696 47.619 33.01 20.02 39.52 3.16
238 240 4.577693 ACTTACTAGCATGCATGGTCATTG 59.422 41.667 33.01 22.25 39.52 2.82
239 241 4.577693 CACTTACTAGCATGCATGGTCATT 59.422 41.667 33.01 20.32 39.52 2.57
240 242 4.132336 CACTTACTAGCATGCATGGTCAT 58.868 43.478 33.01 23.60 39.52 3.06
241 243 3.534554 CACTTACTAGCATGCATGGTCA 58.465 45.455 33.01 17.50 39.52 4.02
242 244 2.874701 CCACTTACTAGCATGCATGGTC 59.125 50.000 33.01 15.05 39.52 4.02
243 245 2.421952 CCCACTTACTAGCATGCATGGT 60.422 50.000 31.85 31.85 41.93 3.55
244 246 2.224606 CCCACTTACTAGCATGCATGG 58.775 52.381 27.34 13.76 0.00 3.66
245 247 2.224606 CCCCACTTACTAGCATGCATG 58.775 52.381 22.70 22.70 0.00 4.06
246 248 1.846439 ACCCCACTTACTAGCATGCAT 59.154 47.619 21.98 7.44 0.00 3.96
247 249 1.209504 GACCCCACTTACTAGCATGCA 59.790 52.381 21.98 5.01 0.00 3.96
248 250 1.209504 TGACCCCACTTACTAGCATGC 59.790 52.381 10.51 10.51 0.00 4.06
249 251 2.501723 ACTGACCCCACTTACTAGCATG 59.498 50.000 0.00 0.00 0.00 4.06
250 252 2.501723 CACTGACCCCACTTACTAGCAT 59.498 50.000 0.00 0.00 0.00 3.79
251 253 1.899814 CACTGACCCCACTTACTAGCA 59.100 52.381 0.00 0.00 0.00 3.49
252 254 1.900486 ACACTGACCCCACTTACTAGC 59.100 52.381 0.00 0.00 0.00 3.42
253 255 2.233922 CCACACTGACCCCACTTACTAG 59.766 54.545 0.00 0.00 0.00 2.57
254 256 2.158279 TCCACACTGACCCCACTTACTA 60.158 50.000 0.00 0.00 0.00 1.82
255 257 1.056660 CCACACTGACCCCACTTACT 58.943 55.000 0.00 0.00 0.00 2.24
256 258 1.053424 TCCACACTGACCCCACTTAC 58.947 55.000 0.00 0.00 0.00 2.34
257 259 2.038863 ATCCACACTGACCCCACTTA 57.961 50.000 0.00 0.00 0.00 2.24
258 260 2.038863 TATCCACACTGACCCCACTT 57.961 50.000 0.00 0.00 0.00 3.16
259 261 1.839994 CATATCCACACTGACCCCACT 59.160 52.381 0.00 0.00 0.00 4.00
260 262 1.134098 CCATATCCACACTGACCCCAC 60.134 57.143 0.00 0.00 0.00 4.61
261 263 1.212375 CCATATCCACACTGACCCCA 58.788 55.000 0.00 0.00 0.00 4.96
262 264 1.507140 TCCATATCCACACTGACCCC 58.493 55.000 0.00 0.00 0.00 4.95
263 265 2.439507 ACATCCATATCCACACTGACCC 59.560 50.000 0.00 0.00 0.00 4.46
264 266 3.134623 TGACATCCATATCCACACTGACC 59.865 47.826 0.00 0.00 0.00 4.02
265 267 4.122776 GTGACATCCATATCCACACTGAC 58.877 47.826 0.00 0.00 0.00 3.51
266 268 3.134623 GGTGACATCCATATCCACACTGA 59.865 47.826 0.00 0.00 0.00 3.41
267 269 3.135348 AGGTGACATCCATATCCACACTG 59.865 47.826 0.00 0.00 0.00 3.66
268 270 3.387962 AGGTGACATCCATATCCACACT 58.612 45.455 0.00 0.00 0.00 3.55
269 271 3.495100 GGAGGTGACATCCATATCCACAC 60.495 52.174 11.95 0.00 36.79 3.82
270 272 2.705658 GGAGGTGACATCCATATCCACA 59.294 50.000 11.95 0.00 36.79 4.17
271 273 2.039084 GGGAGGTGACATCCATATCCAC 59.961 54.545 18.74 0.00 38.70 4.02
272 274 2.338809 GGGAGGTGACATCCATATCCA 58.661 52.381 18.74 0.00 38.70 3.41
273 275 1.276421 CGGGAGGTGACATCCATATCC 59.724 57.143 18.74 0.00 38.70 2.59
274 276 1.971357 ACGGGAGGTGACATCCATATC 59.029 52.381 18.74 0.00 38.70 1.63
293 295 0.388294 GGTATGTCTCCTACCGGCAC 59.612 60.000 0.00 0.00 30.00 5.01
295 297 1.272769 GATGGTATGTCTCCTACCGGC 59.727 57.143 0.00 0.00 41.35 6.13
302 304 6.238484 GCTTTATTGTGTGATGGTATGTCTCC 60.238 42.308 0.00 0.00 0.00 3.71
303 305 6.316140 TGCTTTATTGTGTGATGGTATGTCTC 59.684 38.462 0.00 0.00 0.00 3.36
305 307 6.128035 TGTGCTTTATTGTGTGATGGTATGTC 60.128 38.462 0.00 0.00 0.00 3.06
309 311 5.182950 CCTTGTGCTTTATTGTGTGATGGTA 59.817 40.000 0.00 0.00 0.00 3.25
311 313 4.487948 CCTTGTGCTTTATTGTGTGATGG 58.512 43.478 0.00 0.00 0.00 3.51
312 314 4.487948 CCCTTGTGCTTTATTGTGTGATG 58.512 43.478 0.00 0.00 0.00 3.07
313 315 3.056607 GCCCTTGTGCTTTATTGTGTGAT 60.057 43.478 0.00 0.00 0.00 3.06
315 317 2.676076 GCCCTTGTGCTTTATTGTGTG 58.324 47.619 0.00 0.00 0.00 3.82
316 318 1.269448 CGCCCTTGTGCTTTATTGTGT 59.731 47.619 0.00 0.00 0.00 3.72
317 319 1.981254 CGCCCTTGTGCTTTATTGTG 58.019 50.000 0.00 0.00 0.00 3.33
318 320 0.243636 GCGCCCTTGTGCTTTATTGT 59.756 50.000 0.00 0.00 44.66 2.71
319 321 3.034569 GCGCCCTTGTGCTTTATTG 57.965 52.632 0.00 0.00 44.66 1.90
333 335 2.227865 TGAGAAAGTAACCAAATGCGCC 59.772 45.455 4.18 0.00 0.00 6.53
336 338 5.689383 TCACTGAGAAAGTAACCAAATGC 57.311 39.130 0.00 0.00 36.83 3.56
337 339 6.016777 AGCTTCACTGAGAAAGTAACCAAATG 60.017 38.462 0.00 0.00 36.83 2.32
339 341 5.437060 AGCTTCACTGAGAAAGTAACCAAA 58.563 37.500 0.00 0.00 36.83 3.28
342 344 4.214332 CCAAGCTTCACTGAGAAAGTAACC 59.786 45.833 0.00 0.00 36.83 2.85
343 345 4.816925 ACCAAGCTTCACTGAGAAAGTAAC 59.183 41.667 0.00 0.00 36.83 2.50
344 346 5.036117 ACCAAGCTTCACTGAGAAAGTAA 57.964 39.130 0.00 0.00 36.83 2.24
345 347 4.689612 ACCAAGCTTCACTGAGAAAGTA 57.310 40.909 0.00 0.00 36.83 2.24
346 348 3.567478 ACCAAGCTTCACTGAGAAAGT 57.433 42.857 0.00 0.00 40.93 2.66
347 349 4.907879 AAACCAAGCTTCACTGAGAAAG 57.092 40.909 0.00 0.00 35.40 2.62
348 350 4.275936 GCTAAACCAAGCTTCACTGAGAAA 59.724 41.667 0.00 0.00 39.50 2.52
349 351 3.815401 GCTAAACCAAGCTTCACTGAGAA 59.185 43.478 0.00 0.00 39.50 2.87
350 352 3.403038 GCTAAACCAAGCTTCACTGAGA 58.597 45.455 0.00 0.00 39.50 3.27
351 353 2.158449 CGCTAAACCAAGCTTCACTGAG 59.842 50.000 0.00 0.00 40.49 3.35
352 354 2.143122 CGCTAAACCAAGCTTCACTGA 58.857 47.619 0.00 0.00 40.49 3.41
353 355 1.197721 CCGCTAAACCAAGCTTCACTG 59.802 52.381 0.00 0.00 40.49 3.66
354 356 1.071699 TCCGCTAAACCAAGCTTCACT 59.928 47.619 0.00 0.00 40.49 3.41
355 357 1.464997 CTCCGCTAAACCAAGCTTCAC 59.535 52.381 0.00 0.00 40.49 3.18
356 358 1.808411 CTCCGCTAAACCAAGCTTCA 58.192 50.000 0.00 0.00 40.49 3.02
357 359 0.448197 GCTCCGCTAAACCAAGCTTC 59.552 55.000 0.00 0.00 40.49 3.86
358 360 0.960861 GGCTCCGCTAAACCAAGCTT 60.961 55.000 0.00 0.00 40.49 3.74
359 361 1.377333 GGCTCCGCTAAACCAAGCT 60.377 57.895 0.00 0.00 40.49 3.74
360 362 0.107848 TAGGCTCCGCTAAACCAAGC 60.108 55.000 0.00 0.00 39.21 4.01
361 363 2.622064 ATAGGCTCCGCTAAACCAAG 57.378 50.000 0.00 0.00 0.00 3.61
362 364 3.359695 AAATAGGCTCCGCTAAACCAA 57.640 42.857 0.00 0.00 0.00 3.67
363 365 4.080751 ACTTAAATAGGCTCCGCTAAACCA 60.081 41.667 0.00 0.00 0.00 3.67
364 366 4.272748 CACTTAAATAGGCTCCGCTAAACC 59.727 45.833 0.00 0.00 0.00 3.27
365 367 4.874396 ACACTTAAATAGGCTCCGCTAAAC 59.126 41.667 0.00 0.00 0.00 2.01
366 368 5.093849 ACACTTAAATAGGCTCCGCTAAA 57.906 39.130 0.00 0.00 0.00 1.85
367 369 4.748277 ACACTTAAATAGGCTCCGCTAA 57.252 40.909 0.00 0.00 0.00 3.09
368 370 6.491062 TGTATACACTTAAATAGGCTCCGCTA 59.509 38.462 0.08 0.00 0.00 4.26
369 371 4.957684 ATACACTTAAATAGGCTCCGCT 57.042 40.909 0.00 0.00 0.00 5.52
370 372 5.535333 TGTATACACTTAAATAGGCTCCGC 58.465 41.667 0.08 0.00 0.00 5.54
371 373 6.862090 GTCTGTATACACTTAAATAGGCTCCG 59.138 42.308 0.08 0.00 0.00 4.63
372 374 7.953752 AGTCTGTATACACTTAAATAGGCTCC 58.046 38.462 0.08 0.00 0.00 4.70
373 375 8.852135 AGAGTCTGTATACACTTAAATAGGCTC 58.148 37.037 0.08 6.26 0.00 4.70
374 376 8.770010 AGAGTCTGTATACACTTAAATAGGCT 57.230 34.615 0.08 0.00 0.00 4.58
375 377 9.250624 CAAGAGTCTGTATACACTTAAATAGGC 57.749 37.037 0.08 0.00 30.48 3.93
376 378 9.250624 GCAAGAGTCTGTATACACTTAAATAGG 57.749 37.037 0.08 0.00 30.48 2.57
380 382 9.803315 CATAGCAAGAGTCTGTATACACTTAAA 57.197 33.333 0.08 0.00 30.48 1.52
381 383 8.967918 ACATAGCAAGAGTCTGTATACACTTAA 58.032 33.333 0.08 0.00 30.48 1.85
382 384 8.521170 ACATAGCAAGAGTCTGTATACACTTA 57.479 34.615 0.08 0.00 30.48 2.24
383 385 7.411486 ACATAGCAAGAGTCTGTATACACTT 57.589 36.000 0.08 1.02 31.53 3.16
384 386 7.340743 AGAACATAGCAAGAGTCTGTATACACT 59.659 37.037 0.08 0.00 0.00 3.55
385 387 7.433719 CAGAACATAGCAAGAGTCTGTATACAC 59.566 40.741 0.08 0.00 0.00 2.90
386 388 7.122799 ACAGAACATAGCAAGAGTCTGTATACA 59.877 37.037 5.25 5.25 35.72 2.29
387 389 7.484975 ACAGAACATAGCAAGAGTCTGTATAC 58.515 38.462 9.74 0.00 35.72 1.47
388 390 7.646548 ACAGAACATAGCAAGAGTCTGTATA 57.353 36.000 9.74 0.00 35.72 1.47
389 391 6.537453 ACAGAACATAGCAAGAGTCTGTAT 57.463 37.500 9.74 0.00 35.72 2.29
390 392 5.984695 ACAGAACATAGCAAGAGTCTGTA 57.015 39.130 9.74 0.00 35.72 2.74
391 393 4.881019 ACAGAACATAGCAAGAGTCTGT 57.119 40.909 0.00 6.56 33.07 3.41
392 394 6.336566 ACATACAGAACATAGCAAGAGTCTG 58.663 40.000 0.00 5.49 0.00 3.51
393 395 6.537453 ACATACAGAACATAGCAAGAGTCT 57.463 37.500 0.00 0.00 0.00 3.24
394 396 5.457148 CGACATACAGAACATAGCAAGAGTC 59.543 44.000 0.00 0.00 0.00 3.36
395 397 5.105716 ACGACATACAGAACATAGCAAGAGT 60.106 40.000 0.00 0.00 0.00 3.24
396 398 5.344066 ACGACATACAGAACATAGCAAGAG 58.656 41.667 0.00 0.00 0.00 2.85
397 399 5.324784 ACGACATACAGAACATAGCAAGA 57.675 39.130 0.00 0.00 0.00 3.02
398 400 6.243551 CAAACGACATACAGAACATAGCAAG 58.756 40.000 0.00 0.00 0.00 4.01
399 401 5.121611 CCAAACGACATACAGAACATAGCAA 59.878 40.000 0.00 0.00 0.00 3.91
400 402 4.629634 CCAAACGACATACAGAACATAGCA 59.370 41.667 0.00 0.00 0.00 3.49
401 403 4.630069 ACCAAACGACATACAGAACATAGC 59.370 41.667 0.00 0.00 0.00 2.97
402 404 6.721571 AACCAAACGACATACAGAACATAG 57.278 37.500 0.00 0.00 0.00 2.23
403 405 6.566942 GCAAACCAAACGACATACAGAACATA 60.567 38.462 0.00 0.00 0.00 2.29
404 406 5.757886 CAAACCAAACGACATACAGAACAT 58.242 37.500 0.00 0.00 0.00 2.71
405 407 4.496673 GCAAACCAAACGACATACAGAACA 60.497 41.667 0.00 0.00 0.00 3.18
406 408 3.972502 GCAAACCAAACGACATACAGAAC 59.027 43.478 0.00 0.00 0.00 3.01
407 409 3.880490 AGCAAACCAAACGACATACAGAA 59.120 39.130 0.00 0.00 0.00 3.02
408 410 3.249799 CAGCAAACCAAACGACATACAGA 59.750 43.478 0.00 0.00 0.00 3.41
409 411 3.554524 CAGCAAACCAAACGACATACAG 58.445 45.455 0.00 0.00 0.00 2.74
410 412 2.287308 GCAGCAAACCAAACGACATACA 60.287 45.455 0.00 0.00 0.00 2.29
411 413 2.287308 TGCAGCAAACCAAACGACATAC 60.287 45.455 0.00 0.00 0.00 2.39
412 414 1.950216 TGCAGCAAACCAAACGACATA 59.050 42.857 0.00 0.00 0.00 2.29
413 415 0.743688 TGCAGCAAACCAAACGACAT 59.256 45.000 0.00 0.00 0.00 3.06
414 416 0.743688 ATGCAGCAAACCAAACGACA 59.256 45.000 0.00 0.00 0.00 4.35
415 417 1.268999 TGATGCAGCAAACCAAACGAC 60.269 47.619 0.00 0.00 0.00 4.34
416 418 1.028130 TGATGCAGCAAACCAAACGA 58.972 45.000 0.00 0.00 0.00 3.85
417 419 1.788308 CTTGATGCAGCAAACCAAACG 59.212 47.619 19.25 0.93 0.00 3.60
418 420 1.528161 GCTTGATGCAGCAAACCAAAC 59.472 47.619 19.25 0.71 42.31 2.93
419 421 1.540797 GGCTTGATGCAGCAAACCAAA 60.541 47.619 27.63 1.85 45.15 3.28
420 422 0.033781 GGCTTGATGCAGCAAACCAA 59.966 50.000 27.63 2.61 45.15 3.67
421 423 0.828762 AGGCTTGATGCAGCAAACCA 60.829 50.000 32.13 6.89 45.15 3.67
422 424 1.176527 TAGGCTTGATGCAGCAAACC 58.823 50.000 25.85 25.85 45.15 3.27
423 425 2.229784 AGTTAGGCTTGATGCAGCAAAC 59.770 45.455 19.25 14.33 45.15 2.93
424 426 2.489329 GAGTTAGGCTTGATGCAGCAAA 59.511 45.455 19.25 0.10 45.15 3.68
425 427 2.086869 GAGTTAGGCTTGATGCAGCAA 58.913 47.619 17.67 17.67 45.15 3.91
426 428 1.742761 GAGTTAGGCTTGATGCAGCA 58.257 50.000 0.00 0.00 45.15 4.41
427 429 0.654683 CGAGTTAGGCTTGATGCAGC 59.345 55.000 0.00 0.00 45.15 5.25
428 430 2.015736 ACGAGTTAGGCTTGATGCAG 57.984 50.000 0.00 0.00 45.15 4.41
429 431 3.819564 ATACGAGTTAGGCTTGATGCA 57.180 42.857 0.00 0.00 45.15 3.96
430 432 4.372656 AGAATACGAGTTAGGCTTGATGC 58.627 43.478 0.00 0.00 41.94 3.91
431 433 5.592054 TGAGAATACGAGTTAGGCTTGATG 58.408 41.667 0.00 0.00 32.82 3.07
432 434 5.854010 TGAGAATACGAGTTAGGCTTGAT 57.146 39.130 0.00 0.00 32.82 2.57
433 435 5.408356 GTTGAGAATACGAGTTAGGCTTGA 58.592 41.667 0.00 0.00 32.82 3.02
434 436 4.567159 GGTTGAGAATACGAGTTAGGCTTG 59.433 45.833 0.00 0.00 34.71 4.01
435 437 4.382793 GGGTTGAGAATACGAGTTAGGCTT 60.383 45.833 0.00 0.00 0.00 4.35
436 438 3.132467 GGGTTGAGAATACGAGTTAGGCT 59.868 47.826 0.00 0.00 0.00 4.58
437 439 3.455327 GGGTTGAGAATACGAGTTAGGC 58.545 50.000 0.00 0.00 0.00 3.93
438 440 3.703420 CGGGTTGAGAATACGAGTTAGG 58.297 50.000 0.00 0.00 0.00 2.69
439 441 3.114065 GCGGGTTGAGAATACGAGTTAG 58.886 50.000 0.00 0.00 0.00 2.34
440 442 2.478370 CGCGGGTTGAGAATACGAGTTA 60.478 50.000 0.00 0.00 0.00 2.24
441 443 1.734707 CGCGGGTTGAGAATACGAGTT 60.735 52.381 0.00 0.00 0.00 3.01
442 444 0.179145 CGCGGGTTGAGAATACGAGT 60.179 55.000 0.00 0.00 0.00 4.18
443 445 0.179145 ACGCGGGTTGAGAATACGAG 60.179 55.000 12.47 0.00 0.00 4.18
444 446 0.457166 CACGCGGGTTGAGAATACGA 60.457 55.000 12.47 0.00 0.00 3.43
445 447 1.418342 CCACGCGGGTTGAGAATACG 61.418 60.000 12.47 0.00 0.00 3.06
446 448 0.108520 TCCACGCGGGTTGAGAATAC 60.109 55.000 12.47 0.00 38.11 1.89
447 449 0.609151 TTCCACGCGGGTTGAGAATA 59.391 50.000 12.47 0.00 38.11 1.75
448 450 0.250553 TTTCCACGCGGGTTGAGAAT 60.251 50.000 12.47 0.00 38.11 2.40
449 451 0.464013 TTTTCCACGCGGGTTGAGAA 60.464 50.000 12.47 3.81 38.11 2.87
450 452 1.146485 TTTTCCACGCGGGTTGAGA 59.854 52.632 12.47 0.00 38.11 3.27
451 453 1.281656 GTTTTCCACGCGGGTTGAG 59.718 57.895 12.47 0.00 38.11 3.02
452 454 2.535788 CGTTTTCCACGCGGGTTGA 61.536 57.895 12.47 1.42 43.37 3.18
453 455 2.051703 CGTTTTCCACGCGGGTTG 60.052 61.111 12.47 0.00 43.37 3.77
461 463 2.095718 GCTCAGATCAACCGTTTTCCAC 60.096 50.000 0.00 0.00 0.00 4.02
462 464 2.151202 GCTCAGATCAACCGTTTTCCA 58.849 47.619 0.00 0.00 0.00 3.53
463 465 1.128692 CGCTCAGATCAACCGTTTTCC 59.871 52.381 0.00 0.00 0.00 3.13
464 466 1.798813 ACGCTCAGATCAACCGTTTTC 59.201 47.619 0.00 0.00 0.00 2.29
465 467 1.878953 ACGCTCAGATCAACCGTTTT 58.121 45.000 0.00 0.00 0.00 2.43
466 468 1.878953 AACGCTCAGATCAACCGTTT 58.121 45.000 0.00 0.00 38.79 3.60
467 469 1.798813 GAAACGCTCAGATCAACCGTT 59.201 47.619 0.00 1.64 43.03 4.44
468 470 1.000955 AGAAACGCTCAGATCAACCGT 59.999 47.619 0.00 0.00 0.00 4.83
469 471 1.656095 GAGAAACGCTCAGATCAACCG 59.344 52.381 0.00 0.00 43.38 4.44
470 472 1.656095 CGAGAAACGCTCAGATCAACC 59.344 52.381 0.00 0.00 44.15 3.77
471 473 2.596419 CTCGAGAAACGCTCAGATCAAC 59.404 50.000 6.58 0.00 44.15 3.18
472 474 2.488153 TCTCGAGAAACGCTCAGATCAA 59.512 45.455 14.01 0.00 44.15 2.57
473 475 2.084546 TCTCGAGAAACGCTCAGATCA 58.915 47.619 14.01 0.00 44.15 2.92
474 476 2.715268 CTCTCGAGAAACGCTCAGATC 58.285 52.381 17.36 0.00 44.15 2.75
475 477 1.202245 GCTCTCGAGAAACGCTCAGAT 60.202 52.381 17.36 0.00 44.15 2.90
476 478 0.169230 GCTCTCGAGAAACGCTCAGA 59.831 55.000 17.36 0.00 44.15 3.27
477 479 0.800300 GGCTCTCGAGAAACGCTCAG 60.800 60.000 17.36 3.07 44.15 3.35
478 480 1.213013 GGCTCTCGAGAAACGCTCA 59.787 57.895 17.36 0.00 44.15 4.26
479 481 0.800300 CTGGCTCTCGAGAAACGCTC 60.800 60.000 17.36 10.73 42.26 5.03
480 482 1.214062 CTGGCTCTCGAGAAACGCT 59.786 57.895 17.36 0.00 42.26 5.07
481 483 1.807573 CCTGGCTCTCGAGAAACGC 60.808 63.158 17.36 15.98 42.26 4.84
482 484 1.807573 GCCTGGCTCTCGAGAAACG 60.808 63.158 17.36 6.18 44.09 3.60
483 485 0.739112 CAGCCTGGCTCTCGAGAAAC 60.739 60.000 20.49 12.41 36.40 2.78
484 486 1.593787 CAGCCTGGCTCTCGAGAAA 59.406 57.895 20.49 4.33 36.40 2.52
485 487 2.354401 CCAGCCTGGCTCTCGAGAA 61.354 63.158 20.49 0.28 36.40 2.87
486 488 2.757508 CCAGCCTGGCTCTCGAGA 60.758 66.667 20.49 15.70 36.40 4.04
487 489 2.295472 CTTCCAGCCTGGCTCTCGAG 62.295 65.000 20.49 5.93 36.40 4.04
488 490 2.283894 TTCCAGCCTGGCTCTCGA 60.284 61.111 20.49 11.80 36.40 4.04
489 491 2.186384 CTTCCAGCCTGGCTCTCG 59.814 66.667 20.49 7.97 36.40 4.04
490 492 2.124778 GCTTCCAGCCTGGCTCTC 60.125 66.667 20.49 2.32 36.40 3.20
491 493 2.932194 TGCTTCCAGCCTGGCTCT 60.932 61.111 20.49 0.00 41.51 4.09
492 494 2.749441 GTGCTTCCAGCCTGGCTC 60.749 66.667 20.49 7.88 41.51 4.70
493 495 2.363292 AAAGTGCTTCCAGCCTGGCT 62.363 55.000 17.22 17.22 41.51 4.75
494 496 0.609131 TAAAGTGCTTCCAGCCTGGC 60.609 55.000 11.65 11.65 41.51 4.85
495 497 1.815003 CTTAAAGTGCTTCCAGCCTGG 59.185 52.381 3.69 3.69 41.51 4.45
496 498 2.508526 ACTTAAAGTGCTTCCAGCCTG 58.491 47.619 0.00 0.00 41.51 4.85
497 499 2.959465 ACTTAAAGTGCTTCCAGCCT 57.041 45.000 0.00 0.00 41.51 4.58
498 500 3.609409 CGAAACTTAAAGTGCTTCCAGCC 60.609 47.826 0.00 0.00 41.51 4.85
499 501 3.003378 ACGAAACTTAAAGTGCTTCCAGC 59.997 43.478 0.00 0.00 42.82 4.85
500 502 4.527564 CACGAAACTTAAAGTGCTTCCAG 58.472 43.478 0.00 0.00 0.00 3.86
501 503 4.545823 CACGAAACTTAAAGTGCTTCCA 57.454 40.909 0.00 0.00 0.00 3.53
507 509 2.604614 GGGCTGCACGAAACTTAAAGTG 60.605 50.000 0.50 0.00 37.63 3.16
508 510 1.607148 GGGCTGCACGAAACTTAAAGT 59.393 47.619 0.50 0.00 0.00 2.66
509 511 1.606668 TGGGCTGCACGAAACTTAAAG 59.393 47.619 0.50 0.00 0.00 1.85
510 512 1.606668 CTGGGCTGCACGAAACTTAAA 59.393 47.619 0.50 0.00 0.00 1.52
511 513 1.234821 CTGGGCTGCACGAAACTTAA 58.765 50.000 0.50 0.00 0.00 1.85
512 514 0.107831 ACTGGGCTGCACGAAACTTA 59.892 50.000 0.50 0.00 0.00 2.24
513 515 0.751643 AACTGGGCTGCACGAAACTT 60.752 50.000 0.50 0.00 0.00 2.66
514 516 0.751643 AAACTGGGCTGCACGAAACT 60.752 50.000 0.50 0.00 0.00 2.66
515 517 0.317854 GAAACTGGGCTGCACGAAAC 60.318 55.000 0.50 0.00 0.00 2.78
516 518 0.465460 AGAAACTGGGCTGCACGAAA 60.465 50.000 0.50 0.00 0.00 3.46
517 519 0.394938 TAGAAACTGGGCTGCACGAA 59.605 50.000 0.50 0.00 0.00 3.85
518 520 0.320421 GTAGAAACTGGGCTGCACGA 60.320 55.000 0.50 0.00 0.00 4.35
519 521 0.602638 TGTAGAAACTGGGCTGCACG 60.603 55.000 0.50 0.00 0.00 5.34
520 522 1.826385 ATGTAGAAACTGGGCTGCAC 58.174 50.000 0.50 0.00 29.71 4.57
521 523 2.304470 TGTATGTAGAAACTGGGCTGCA 59.696 45.455 0.50 0.00 0.00 4.41
522 524 2.985896 TGTATGTAGAAACTGGGCTGC 58.014 47.619 0.00 0.00 0.00 5.25
523 525 3.375299 GCTTGTATGTAGAAACTGGGCTG 59.625 47.826 0.00 0.00 0.00 4.85
524 526 3.264450 AGCTTGTATGTAGAAACTGGGCT 59.736 43.478 0.00 0.00 0.00 5.19
525 527 3.610911 AGCTTGTATGTAGAAACTGGGC 58.389 45.455 0.00 0.00 0.00 5.36
526 528 6.043411 GTCTAGCTTGTATGTAGAAACTGGG 58.957 44.000 0.00 0.00 0.00 4.45
527 529 6.631016 TGTCTAGCTTGTATGTAGAAACTGG 58.369 40.000 0.00 0.00 0.00 4.00
528 530 7.063544 GGTTGTCTAGCTTGTATGTAGAAACTG 59.936 40.741 0.00 0.00 0.00 3.16
529 531 7.097834 GGTTGTCTAGCTTGTATGTAGAAACT 58.902 38.462 0.00 0.00 0.00 2.66
530 532 6.872020 TGGTTGTCTAGCTTGTATGTAGAAAC 59.128 38.462 0.00 0.00 0.00 2.78
531 533 6.999950 TGGTTGTCTAGCTTGTATGTAGAAA 58.000 36.000 0.00 0.00 0.00 2.52
532 534 6.599356 TGGTTGTCTAGCTTGTATGTAGAA 57.401 37.500 0.00 0.00 0.00 2.10
533 535 6.599356 TTGGTTGTCTAGCTTGTATGTAGA 57.401 37.500 0.00 0.00 0.00 2.59
534 536 7.041721 TGATTGGTTGTCTAGCTTGTATGTAG 58.958 38.462 0.00 0.00 0.00 2.74
535 537 6.941857 TGATTGGTTGTCTAGCTTGTATGTA 58.058 36.000 0.00 0.00 0.00 2.29
536 538 5.804639 TGATTGGTTGTCTAGCTTGTATGT 58.195 37.500 0.00 0.00 0.00 2.29
537 539 6.372659 AGTTGATTGGTTGTCTAGCTTGTATG 59.627 38.462 0.00 0.00 0.00 2.39
538 540 6.476378 AGTTGATTGGTTGTCTAGCTTGTAT 58.524 36.000 0.00 0.00 0.00 2.29
539 541 5.865085 AGTTGATTGGTTGTCTAGCTTGTA 58.135 37.500 0.00 0.00 0.00 2.41
540 542 4.718961 AGTTGATTGGTTGTCTAGCTTGT 58.281 39.130 0.00 0.00 0.00 3.16
541 543 4.756642 TGAGTTGATTGGTTGTCTAGCTTG 59.243 41.667 0.00 0.00 0.00 4.01
542 544 4.757149 GTGAGTTGATTGGTTGTCTAGCTT 59.243 41.667 0.00 0.00 0.00 3.74
543 545 4.040952 AGTGAGTTGATTGGTTGTCTAGCT 59.959 41.667 0.00 0.00 0.00 3.32
544 546 4.319177 AGTGAGTTGATTGGTTGTCTAGC 58.681 43.478 0.00 0.00 0.00 3.42
545 547 8.553459 AAATAGTGAGTTGATTGGTTGTCTAG 57.447 34.615 0.00 0.00 0.00 2.43
547 549 8.784043 GTTAAATAGTGAGTTGATTGGTTGTCT 58.216 33.333 0.00 0.00 0.00 3.41
548 550 8.021396 GGTTAAATAGTGAGTTGATTGGTTGTC 58.979 37.037 0.00 0.00 0.00 3.18
549 551 7.039993 GGGTTAAATAGTGAGTTGATTGGTTGT 60.040 37.037 0.00 0.00 0.00 3.32
550 552 7.040062 TGGGTTAAATAGTGAGTTGATTGGTTG 60.040 37.037 0.00 0.00 0.00 3.77
551 553 7.007723 TGGGTTAAATAGTGAGTTGATTGGTT 58.992 34.615 0.00 0.00 0.00 3.67
552 554 6.548321 TGGGTTAAATAGTGAGTTGATTGGT 58.452 36.000 0.00 0.00 0.00 3.67
553 555 7.339212 TCATGGGTTAAATAGTGAGTTGATTGG 59.661 37.037 0.00 0.00 0.00 3.16
554 556 8.279970 TCATGGGTTAAATAGTGAGTTGATTG 57.720 34.615 0.00 0.00 0.00 2.67
555 557 8.328758 TCTCATGGGTTAAATAGTGAGTTGATT 58.671 33.333 0.00 0.00 35.70 2.57
556 558 7.861629 TCTCATGGGTTAAATAGTGAGTTGAT 58.138 34.615 0.00 0.00 35.70 2.57
557 559 7.180229 TCTCTCATGGGTTAAATAGTGAGTTGA 59.820 37.037 0.00 0.00 35.70 3.18
558 560 7.278868 GTCTCTCATGGGTTAAATAGTGAGTTG 59.721 40.741 0.00 0.00 35.70 3.16
559 561 7.181125 AGTCTCTCATGGGTTAAATAGTGAGTT 59.819 37.037 0.00 0.00 35.70 3.01
560 562 6.670027 AGTCTCTCATGGGTTAAATAGTGAGT 59.330 38.462 0.00 0.00 35.70 3.41
561 563 6.983307 CAGTCTCTCATGGGTTAAATAGTGAG 59.017 42.308 0.00 0.00 35.58 3.51
562 564 6.127054 CCAGTCTCTCATGGGTTAAATAGTGA 60.127 42.308 0.00 0.00 32.63 3.41
563 565 6.051717 CCAGTCTCTCATGGGTTAAATAGTG 58.948 44.000 0.00 0.00 32.63 2.74
564 566 5.726793 ACCAGTCTCTCATGGGTTAAATAGT 59.273 40.000 0.00 0.00 41.13 2.12
565 567 6.240549 ACCAGTCTCTCATGGGTTAAATAG 57.759 41.667 0.00 0.00 41.13 1.73
566 568 6.414732 CAACCAGTCTCTCATGGGTTAAATA 58.585 40.000 0.00 0.00 39.71 1.40
567 569 5.256474 CAACCAGTCTCTCATGGGTTAAAT 58.744 41.667 0.00 0.00 39.71 1.40
568 570 4.506625 CCAACCAGTCTCTCATGGGTTAAA 60.507 45.833 0.00 0.00 39.71 1.52
569 571 3.009033 CCAACCAGTCTCTCATGGGTTAA 59.991 47.826 0.00 0.00 39.71 2.01
570 572 2.571653 CCAACCAGTCTCTCATGGGTTA 59.428 50.000 0.00 0.00 39.71 2.85
571 573 1.352352 CCAACCAGTCTCTCATGGGTT 59.648 52.381 0.00 0.00 42.29 4.11
572 574 0.987294 CCAACCAGTCTCTCATGGGT 59.013 55.000 0.00 0.00 41.13 4.51
573 575 0.254178 CCCAACCAGTCTCTCATGGG 59.746 60.000 0.00 0.00 41.13 4.00
574 576 0.393537 GCCCAACCAGTCTCTCATGG 60.394 60.000 0.00 0.00 42.60 3.66
575 577 0.617413 AGCCCAACCAGTCTCTCATG 59.383 55.000 0.00 0.00 0.00 3.07
576 578 1.004044 CAAGCCCAACCAGTCTCTCAT 59.996 52.381 0.00 0.00 0.00 2.90
577 579 0.397941 CAAGCCCAACCAGTCTCTCA 59.602 55.000 0.00 0.00 0.00 3.27
578 580 0.687354 TCAAGCCCAACCAGTCTCTC 59.313 55.000 0.00 0.00 0.00 3.20
579 581 1.004044 CATCAAGCCCAACCAGTCTCT 59.996 52.381 0.00 0.00 0.00 3.10
580 582 1.457346 CATCAAGCCCAACCAGTCTC 58.543 55.000 0.00 0.00 0.00 3.36
581 583 0.610232 GCATCAAGCCCAACCAGTCT 60.610 55.000 0.00 0.00 37.23 3.24
582 584 0.895100 TGCATCAAGCCCAACCAGTC 60.895 55.000 0.00 0.00 44.83 3.51
583 585 0.896940 CTGCATCAAGCCCAACCAGT 60.897 55.000 0.00 0.00 44.83 4.00
584 586 1.888018 CTGCATCAAGCCCAACCAG 59.112 57.895 0.00 0.00 44.83 4.00
585 587 2.277591 GCTGCATCAAGCCCAACCA 61.278 57.895 0.00 0.00 44.83 3.67
586 588 2.575461 GCTGCATCAAGCCCAACC 59.425 61.111 0.00 0.00 44.83 3.77
592 594 1.135286 GTTTGGTAGGCTGCATCAAGC 60.135 52.381 4.64 0.00 45.96 4.01
593 595 1.131126 CGTTTGGTAGGCTGCATCAAG 59.869 52.381 4.64 0.00 0.00 3.02
594 596 1.164411 CGTTTGGTAGGCTGCATCAA 58.836 50.000 4.64 0.00 0.00 2.57
595 597 1.305219 GCGTTTGGTAGGCTGCATCA 61.305 55.000 4.64 0.00 34.83 3.07
596 598 1.429423 GCGTTTGGTAGGCTGCATC 59.571 57.895 4.64 0.00 34.83 3.91
597 599 2.398554 CGCGTTTGGTAGGCTGCAT 61.399 57.895 4.64 0.00 35.51 3.96
598 600 3.047280 CGCGTTTGGTAGGCTGCA 61.047 61.111 4.64 0.00 35.51 4.41
599 601 3.023591 GACGCGTTTGGTAGGCTGC 62.024 63.158 15.53 0.00 35.51 5.25
600 602 2.388232 GGACGCGTTTGGTAGGCTG 61.388 63.158 15.53 0.00 35.51 4.85
601 603 2.047560 GGACGCGTTTGGTAGGCT 60.048 61.111 15.53 0.00 35.51 4.58
602 604 2.357760 TGGACGCGTTTGGTAGGC 60.358 61.111 15.53 0.00 0.00 3.93
603 605 2.388232 GCTGGACGCGTTTGGTAGG 61.388 63.158 15.53 1.03 0.00 3.18
604 606 3.165498 GCTGGACGCGTTTGGTAG 58.835 61.111 15.53 8.90 0.00 3.18
618 620 7.274646 TTTCTTTAGAATTCAAGCAAGCGCTG 61.275 38.462 12.58 6.58 39.92 5.18
619 621 5.278463 TTTCTTTAGAATTCAAGCAAGCGCT 60.278 36.000 2.64 2.64 41.55 5.92
620 622 4.083581 TCTTTAGAATTCAAGCAAGCGC 57.916 40.909 8.44 0.00 38.99 5.92
621 623 6.373779 TCTTTCTTTAGAATTCAAGCAAGCG 58.626 36.000 8.44 0.00 33.54 4.68
622 624 7.588512 TCTCTTTCTTTAGAATTCAAGCAAGC 58.411 34.615 8.44 0.00 33.54 4.01
623 625 7.750014 GCTCTCTTTCTTTAGAATTCAAGCAAG 59.250 37.037 8.44 9.40 33.54 4.01
624 626 7.229306 TGCTCTCTTTCTTTAGAATTCAAGCAA 59.771 33.333 8.44 0.00 35.75 3.91
625 627 6.712095 TGCTCTCTTTCTTTAGAATTCAAGCA 59.288 34.615 8.44 12.28 36.03 3.91
626 628 7.020602 GTGCTCTCTTTCTTTAGAATTCAAGC 58.979 38.462 8.44 2.75 33.54 4.01
627 629 7.095439 ACGTGCTCTCTTTCTTTAGAATTCAAG 60.095 37.037 8.44 3.75 33.54 3.02
628 630 6.706270 ACGTGCTCTCTTTCTTTAGAATTCAA 59.294 34.615 8.44 0.00 33.54 2.69
629 631 6.146184 CACGTGCTCTCTTTCTTTAGAATTCA 59.854 38.462 0.82 0.00 33.54 2.57
630 632 6.366332 TCACGTGCTCTCTTTCTTTAGAATTC 59.634 38.462 11.67 0.00 33.54 2.17
631 633 6.223852 TCACGTGCTCTCTTTCTTTAGAATT 58.776 36.000 11.67 0.00 33.54 2.17
632 634 5.784177 TCACGTGCTCTCTTTCTTTAGAAT 58.216 37.500 11.67 0.00 33.54 2.40
633 635 5.196341 TCACGTGCTCTCTTTCTTTAGAA 57.804 39.130 11.67 0.00 0.00 2.10
634 636 4.848562 TCACGTGCTCTCTTTCTTTAGA 57.151 40.909 11.67 0.00 0.00 2.10
635 637 4.143514 CGTTCACGTGCTCTCTTTCTTTAG 60.144 45.833 11.67 0.00 34.11 1.85
636 638 3.734231 CGTTCACGTGCTCTCTTTCTTTA 59.266 43.478 11.67 0.00 34.11 1.85
637 639 2.540101 CGTTCACGTGCTCTCTTTCTTT 59.460 45.455 11.67 0.00 34.11 2.52
638 640 2.128035 CGTTCACGTGCTCTCTTTCTT 58.872 47.619 11.67 0.00 34.11 2.52
639 641 1.772182 CGTTCACGTGCTCTCTTTCT 58.228 50.000 11.67 0.00 34.11 2.52
640 642 0.161870 GCGTTCACGTGCTCTCTTTC 59.838 55.000 11.67 0.00 42.22 2.62
641 643 1.548973 CGCGTTCACGTGCTCTCTTT 61.549 55.000 11.67 0.00 43.06 2.52
642 644 2.016704 CGCGTTCACGTGCTCTCTT 61.017 57.895 11.67 0.00 43.06 2.85
643 645 2.429236 CGCGTTCACGTGCTCTCT 60.429 61.111 11.67 0.00 43.06 3.10
658 660 2.340283 GCAAATACTTACGTTTTGGCGC 59.660 45.455 0.00 0.00 32.33 6.53
660 662 2.912345 CCGCAAATACTTACGTTTTGGC 59.088 45.455 10.69 3.91 32.33 4.52
663 665 4.529446 CACACCGCAAATACTTACGTTTT 58.471 39.130 0.00 0.00 0.00 2.43
668 670 3.936453 TCATCCACACCGCAAATACTTAC 59.064 43.478 0.00 0.00 0.00 2.34
669 671 4.081365 TCTCATCCACACCGCAAATACTTA 60.081 41.667 0.00 0.00 0.00 2.24
672 674 2.351726 GTCTCATCCACACCGCAAATAC 59.648 50.000 0.00 0.00 0.00 1.89
677 681 1.293179 CAGTCTCATCCACACCGCA 59.707 57.895 0.00 0.00 0.00 5.69
734 739 0.997196 GACTTGTAAGTAAGCCCGCG 59.003 55.000 0.00 0.00 39.88 6.46
741 746 7.042051 GCATGTCTGACTTTGACTTGTAAGTAA 60.042 37.037 9.51 0.00 39.88 2.24
769 774 3.049674 GCTGCTGCAGGTACGCAA 61.050 61.111 29.05 0.00 42.45 4.85
777 782 0.886043 TTACACACAGGCTGCTGCAG 60.886 55.000 24.80 24.80 41.91 4.41
790 799 1.698506 CCCTTGCCCTTGTTTACACA 58.301 50.000 0.00 0.00 0.00 3.72
801 810 2.674380 CAGTCACTGCCCTTGCCC 60.674 66.667 0.00 0.00 36.33 5.36
807 816 0.179062 CTATCAGCCAGTCACTGCCC 60.179 60.000 0.00 0.00 35.04 5.36
809 818 1.150567 CGCTATCAGCCAGTCACTGC 61.151 60.000 0.00 0.00 38.18 4.40
811 820 0.174389 CACGCTATCAGCCAGTCACT 59.826 55.000 0.00 0.00 38.18 3.41
812 821 1.424493 GCACGCTATCAGCCAGTCAC 61.424 60.000 0.00 0.00 38.18 3.67
813 822 1.153568 GCACGCTATCAGCCAGTCA 60.154 57.895 0.00 0.00 38.18 3.41
814 823 0.531532 ATGCACGCTATCAGCCAGTC 60.532 55.000 0.00 0.00 38.18 3.51
815 824 0.107508 AATGCACGCTATCAGCCAGT 60.108 50.000 0.00 0.00 38.18 4.00
816 825 0.585357 GAATGCACGCTATCAGCCAG 59.415 55.000 0.00 0.00 38.18 4.85
817 826 0.178767 AGAATGCACGCTATCAGCCA 59.821 50.000 0.00 0.00 38.18 4.75
818 827 0.864455 GAGAATGCACGCTATCAGCC 59.136 55.000 0.00 0.00 38.18 4.85
819 828 1.575244 TGAGAATGCACGCTATCAGC 58.425 50.000 0.00 0.00 38.02 4.26
820 829 2.096367 GCATGAGAATGCACGCTATCAG 60.096 50.000 5.83 0.00 46.25 2.90
821 830 1.869132 GCATGAGAATGCACGCTATCA 59.131 47.619 5.83 0.00 46.25 2.15
822 831 2.591066 GCATGAGAATGCACGCTATC 57.409 50.000 5.83 0.00 46.25 2.08
924 938 3.854666 TGAGCACTAGCAGAGATTCAAC 58.145 45.455 0.00 0.00 45.49 3.18
1153 1175 2.606961 CGCTGGCGAGTCTTTGCAA 61.607 57.895 9.51 0.00 42.83 4.08
1198 1267 3.493002 CGTAGGAGAGGAGAGACGTATGT 60.493 52.174 0.00 0.00 0.00 2.29
1259 1332 2.211250 AGCATCAGCAGTCCATGTTT 57.789 45.000 0.00 0.00 45.49 2.83
1286 1360 1.747355 CGAACCATACGTAGACAGGGT 59.253 52.381 0.08 0.00 32.41 4.34
1299 1373 3.119101 ACGAGAAGATAACTGCGAACCAT 60.119 43.478 0.00 0.00 0.00 3.55
1305 1379 0.924090 GCCACGAGAAGATAACTGCG 59.076 55.000 0.00 0.00 0.00 5.18
1319 1393 4.450122 GTCATGCACAGCGCCACG 62.450 66.667 2.29 0.00 41.33 4.94
1458 1544 3.058708 ACTGCACATGTGAGAACAATTCG 60.059 43.478 29.80 8.07 34.02 3.34
1491 1580 2.936498 GGATCGTTACATCAACCAGTGG 59.064 50.000 7.91 7.91 33.19 4.00
1495 1584 5.105106 ACACATAGGATCGTTACATCAACCA 60.105 40.000 0.00 0.00 33.19 3.67
1497 1586 7.042925 GGTTACACATAGGATCGTTACATCAAC 60.043 40.741 0.00 0.00 0.00 3.18
1508 1597 4.067896 CTGCCATGGTTACACATAGGATC 58.932 47.826 14.67 0.00 0.00 3.36
1684 1780 1.006805 CGAGGATGATGGAGGCGAC 60.007 63.158 0.00 0.00 0.00 5.19
1806 1903 1.750018 CGGATGACATGCAGGGCAA 60.750 57.895 12.64 0.00 43.62 4.52
1918 2031 7.876896 ACAAACAAGTTTAAAACATCAACGT 57.123 28.000 0.00 0.00 0.00 3.99
2006 2119 3.252215 CGTTCCAAACTATGCCACAAAGA 59.748 43.478 0.00 0.00 0.00 2.52
2050 2169 4.908736 CGATAGCAAATGGTCAAATTCGT 58.091 39.130 0.00 0.00 0.00 3.85
2082 2201 3.696051 AGTACGTTAAATCCTACCGCTGA 59.304 43.478 0.00 0.00 0.00 4.26
2084 2203 4.036852 GGTAGTACGTTAAATCCTACCGCT 59.963 45.833 0.00 0.00 38.58 5.52
2085 2204 4.202010 TGGTAGTACGTTAAATCCTACCGC 60.202 45.833 0.00 0.00 46.91 5.68
2105 2224 2.136791 CGCCATAGATCCTGGTGGT 58.863 57.895 14.78 0.00 39.99 4.16
2132 2251 2.030412 TGCTGCGACAACGACCAT 59.970 55.556 0.00 0.00 42.66 3.55
2144 2263 2.546321 CACGTCAACGAGTGCTGC 59.454 61.111 9.88 0.00 43.02 5.25
2169 2288 5.652014 TGGCATAAGTTTTAATGTGCTAGCT 59.348 36.000 17.23 0.00 33.38 3.32
2186 2305 3.153024 GTCAAGGACGCTGGCATAA 57.847 52.632 0.00 0.00 0.00 1.90
2213 2332 2.168521 CCAATCTCTTACCCGCTCAAGA 59.831 50.000 0.00 0.00 0.00 3.02
2216 2335 0.830648 CCCAATCTCTTACCCGCTCA 59.169 55.000 0.00 0.00 0.00 4.26
2242 2361 4.108299 CATGCCCTACCGCCCACA 62.108 66.667 0.00 0.00 0.00 4.17
2306 2425 8.246180 ACATCCGAGAACTTTTAGTATCGTTTA 58.754 33.333 11.14 1.54 36.44 2.01
2312 2432 9.503399 AAAGAAACATCCGAGAACTTTTAGTAT 57.497 29.630 0.00 0.00 0.00 2.12
2317 2437 6.294010 GCCTAAAGAAACATCCGAGAACTTTT 60.294 38.462 0.00 0.00 0.00 2.27
2328 2448 3.203716 CCCTACCGCCTAAAGAAACATC 58.796 50.000 0.00 0.00 0.00 3.06
2330 2450 1.339342 GCCCTACCGCCTAAAGAAACA 60.339 52.381 0.00 0.00 0.00 2.83
2475 2596 9.509855 GAATTTGAATGTTATGGTTATACGCAA 57.490 29.630 0.00 0.00 0.00 4.85
2476 2597 8.132362 GGAATTTGAATGTTATGGTTATACGCA 58.868 33.333 0.00 0.00 0.00 5.24
2477 2598 8.132362 TGGAATTTGAATGTTATGGTTATACGC 58.868 33.333 0.00 0.00 0.00 4.42
2478 2599 9.445786 GTGGAATTTGAATGTTATGGTTATACG 57.554 33.333 0.00 0.00 0.00 3.06
2479 2600 9.744468 GGTGGAATTTGAATGTTATGGTTATAC 57.256 33.333 0.00 0.00 0.00 1.47
2480 2601 9.480861 TGGTGGAATTTGAATGTTATGGTTATA 57.519 29.630 0.00 0.00 0.00 0.98
2481 2602 8.372877 TGGTGGAATTTGAATGTTATGGTTAT 57.627 30.769 0.00 0.00 0.00 1.89
2482 2603 7.782897 TGGTGGAATTTGAATGTTATGGTTA 57.217 32.000 0.00 0.00 0.00 2.85
2483 2604 6.678568 TGGTGGAATTTGAATGTTATGGTT 57.321 33.333 0.00 0.00 0.00 3.67
2484 2605 6.872585 ATGGTGGAATTTGAATGTTATGGT 57.127 33.333 0.00 0.00 0.00 3.55
2485 2606 7.780064 TGTATGGTGGAATTTGAATGTTATGG 58.220 34.615 0.00 0.00 0.00 2.74
2486 2607 9.086336 GTTGTATGGTGGAATTTGAATGTTATG 57.914 33.333 0.00 0.00 0.00 1.90
2487 2608 8.811017 TGTTGTATGGTGGAATTTGAATGTTAT 58.189 29.630 0.00 0.00 0.00 1.89
2567 2743 8.590204 TGAACTTGGTATGTTGAACACTCTATA 58.410 33.333 0.00 0.00 0.00 1.31
2568 2744 7.450074 TGAACTTGGTATGTTGAACACTCTAT 58.550 34.615 0.00 0.00 0.00 1.98
2569 2745 6.822442 TGAACTTGGTATGTTGAACACTCTA 58.178 36.000 0.00 0.00 0.00 2.43
2570 2746 5.680619 TGAACTTGGTATGTTGAACACTCT 58.319 37.500 0.00 0.00 0.00 3.24
2571 2747 6.183360 TGTTGAACTTGGTATGTTGAACACTC 60.183 38.462 0.00 0.00 42.96 3.51
2572 2748 5.650266 TGTTGAACTTGGTATGTTGAACACT 59.350 36.000 0.00 0.00 42.96 3.55
2573 2749 5.885881 TGTTGAACTTGGTATGTTGAACAC 58.114 37.500 0.00 0.00 42.96 3.32
2575 2751 8.094798 TCTATGTTGAACTTGGTATGTTGAAC 57.905 34.615 0.00 0.00 40.26 3.18
2576 2752 7.936847 ACTCTATGTTGAACTTGGTATGTTGAA 59.063 33.333 0.00 0.00 0.00 2.69
2577 2753 7.387673 CACTCTATGTTGAACTTGGTATGTTGA 59.612 37.037 0.00 0.00 0.00 3.18
2578 2754 7.173218 ACACTCTATGTTGAACTTGGTATGTTG 59.827 37.037 0.00 0.00 38.98 3.33
2579 2755 7.224297 ACACTCTATGTTGAACTTGGTATGTT 58.776 34.615 0.00 0.00 38.98 2.71
2580 2756 6.769512 ACACTCTATGTTGAACTTGGTATGT 58.230 36.000 0.00 0.00 38.98 2.29
2623 2799 6.716934 TTTAGAACCTTGTATTTGGTTGCA 57.283 33.333 1.88 0.00 45.48 4.08
2644 2820 7.148239 GGACACTTGCTTGCTATGTAGTATTTT 60.148 37.037 0.00 0.00 0.00 1.82
2718 2894 3.563808 TCTCAAACCAAATGAAGACCACG 59.436 43.478 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.