>input_sequence_69778
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-------------------------------------------------------------ATGGCCGGCACGGTGGAGG
ACAGCGGGAAGACGGCGCCGTCCTCTCCGGCCTGGCTCCACGGCGCCGACCTGGGCCTGAGGGTGCTGCTGTTCGCCGTC
TCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATCGTGCCCTTG-----------------------
---------------------CAAAGACTCGCCAGCGCTCATGTACGTGAGTCGATCGTCG---TGACATACGTCTCTCC
TCTCCTACGGGAATTAATAAACTTCCACGTTGGTAC----GGTGCATATAAAAACATGGACTGCTGATGCTTA-TGTGTA
CCCTGTCTACGTATGGTTCGCAGTTATCTTCTCGTGGCGCTGTGCATGACGAGCTTGTATAGCCTTCTGACGGCCGCCAG
CTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCCTCATTCTGCTTGATGTGGTGAGTATCT
T------------CTACCTTGAACGAATTGTTCTCACATGTGC---AGTTGCACGCAGGCCACTGGTTGATGTAACGATC
CTATGTGTAACC-------ATGGCAGGTTTACGCGGGCATCATGGCGTCGGCGACGGGCACGGCGGGGGCCGTGGCCTGG
GTGGGGCTGAAGGGGAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTACGACAAGTTCTGCCGCCACATCGGCAG
CGCCACCTGCCTCGGCCTCGTCGCCTCCATCATCCTCGTCCTCCTCGTCGTCCTCAACGCCTACTCCCTCTACCGGAGAA
GCCGCTGA------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G259400
CAGCCCAGGCTGCTCTCATCTTCGAAAGTAAAAAGACATTATATACCAGTTCGTCAGATAGGGCACGTTGACTAACACAA
ACTAGATAAGCAACCCCTAACCAGAATCGGGAATTCTATCAGCGAGTGAAAGCGATGGATACA-TTTGAGAACAGGTAGC
CACGTCAATATTAGCATTGCTTATCTGACTGACCAATCGGTGTAGAACTTTCATTTCACTATGATAATATACTATAGACC
AATGACCATGCATGCTAGTAAGTGGGGTCAGTGTGGATATGGATGTCACCTCCCGTGCCGGTAGGAGACATACCATCACA
CAATAAAGCACAAGGGCGCATTTGGTTACTTTCTCAGTGAAGCTTGGTTTAGCGGAGCCTATTTAAGTGTATACAGACTC
TTGCTATGTTCTGTATGTCGTTTGGTTTGCTGCATCAAGCCTAACTCGTATTCTCAACCCGCGTGGAAAACGGTTGATCT
GAGCGTTTCTCGAGAGCCAGGCTGGAAGCACTTTAAGTTTCGTGCAGCCCAGTTTCTACATACAAGCTAGACAACCAATC
AACTCACTATTTAACCCATGAGAGACTGGTTGGGCTTGATGCAGCCTACCAAACGCGTCCAGCGCTTGCTTGAATTCTAA
AGAAAGAGAGCACGTGAACGCGCCAAAACGTAAG--TATTTGCGGTGTGGATGAGACTG-CAACATAGTGGACGCGATCG
TGGTAAGTTGGCGTACAACGCGGGCTTACTTACAAGTCAAAGTCAGACATGCATTGCGTACCTG----CAGCAGCCTGTG
TGTAAACAAGGGCAAGGGCAGTGACTGGCTGATAGCGTGCATTCTCATGCACGTGCCCCACCCTGGGCCA-----GCGGC
GGCTACAAGCCTATAAAACCACGCACTGCCGTGCCACGACGCCTCGGCGATCAATCCGTTGAA---TCTCTGCTAGTGCT
CAGAAACCGCAGACTC-----CCCGCCCAGCTATAGACAAGTGCGCGCCCCGACCGAAGGCATGGCCGGCACGGTGGAGG
ACAGCGGGAAGACGGCGCCGTCCTCTCCGGCCTGGCTCCACGGCGCCGACCTGGGCCTGAGGGTGCTGCTGTTCGCCGTC
TCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATCGTGCCCTTG-----------------------
---------------------CAAAGACTCGCCAGCGCTCATGTACGTGAGTCGATCGTCG---TGACATACGTCTCTCC
TCTCCTACGGGAATTAATAAACTTCCACGTTGGTAC----GGTGCATATAAAAACATGGACTGCTGATGCTTA-TGTGTA
CCCTGTCTACGTATGGTTCGCAGTTATCTTCTCGTGGCGCTGTGCATGACGAGCTTGTATAGCCTTCTGACGGCCGCCAG
CTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCCTCATTCTGCTTGATGTGGTGAGTATCT
T------------CTACCTTGAACGAATTGTTCTCACATGTGC---AGTTGCACGCAGGCCACTGGTTGATGTAACGATC
CTATGTGTAACC-------ATGGCAGGTTTACGCGGGCATCATGGCGTCGGCGACGGGCACGGCGGGGGCCGTGGCCTGG
GTGGGGCTGAAGGGGAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTACGACAAGTTCTGCCGCCACATCGGCAG
CGCCACCTGCCTCGGCCTCGTCGCCTCCATCATCCTCGTCCTCCTCGTCGTCCTCAACGCCTACTCCCTCTACCGGAGAA
GCCGCTGATCGAACCAGGCGTCCAGCCCTGCTCCCTCGTCCGGCTGGCGG-ACAAATTTCATTTGCCCTGCATGTCATCC
GTCGGCTTTGGTGAGCTTTGCGGGCCGGCGGTCAGTTGTATAAAAGATGCTACGTGTTCCTGTGGCTGTGGAGTGCTCTC
CGATA----------------TGTTCATGTACGTTGATGTTTTAAACTTGTTTGTTTCTACAACACATTGCTTTGTGACA
GTAAGCACGACTTTTATCGGTCAAAATCACGGTTCTGATCTTTGTGGCATAGTTTGGAACGATTGGACCCATTCT-----
-AAAAAAAACGAATTTGACCATTTGCTATCGCCATCATCCTCAGCGGTAGGATTTAACGTACTACCACCAGGATCTATGG
CGGTAGAAATATGGTCGTTGTCGCAGCACTCGTTGACGTGGACAAGTAGCTAGCACATTAAAACTTATGCCAGCGTCCTT
GACGGTAGACATCTTGAGCGGGTAAGAGATTGGGGGCTTTTGTGGGCGGTAGGGCATGTAACCCTATTACCAAGGTCTAT
GGCGGTAGGGTACTAAATTTAGCCTAAA-CGATACTAAAAGTTCTCGGATGTTTCTTTAGGCGGTAGGGCATGTAACCCT
ATCGCCAGGAAAGTGGCGGTA-GGCCCATGTAACCACTCCAGAGCTCATTTACCATTCTGACTAGCACACCGTTGACATC
AAATAACAATATAATTCAGTATAACAACAATATAATTGCGTATAACCAT-------------------------------
------------------------AACATTCAAATTCCACCATACAACAATTGTCCATCACAAAATAATTTGATCACAAA
TAGTTCAACATACCAAGTTCAATATAGAGTGTTCAACATACCAAGTTCAACATAGAGTGTTCAACATACCAAGTTCAATG
CAACCAAATACAAGGTTCTAAAATACTACATAGCAAGCAAGTGTCCATATTACTTTCTTCCCCTCTTGTTTAGACGATCC
TCGGCTCTCTTTGCGTGGTCTTCATTTGGTTTGAGACCGCCTCGAGCA
>chr1A_54
TCAGATAGA-----------------------------------------------------GCACGTTGACTAACACAA
ACTAGATAAGCAACCCCTAACGAGAATCATGGATGCGATCGGCGCGTGAAAGCGATGGATGCATTTGGAGAACAGCTAGC
CACGTCAACATTACCATTGCTTGTCTGACTGACCAACTGGTGTACAACTTCCATTTTATTAGGGTCGGT-----------
------------------------------------ATATGGATGTCACCTTCCCTACCGGTATCACACACAATGTAG--
-----AAGCACAAGTGCTGAATTCCAATTAACG-----------------------------------------------
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-----GAGAGCACGTGAACACACCCAAACCCAAACATATTCACGGTGTGGATGAGGCTGTCAA---------CACGATCA
TACTAAGTTG-CGTACAAAGCGGGC-TACTTGCAAGTCAAAGTCAGAAGTGCA-TGCGTACTTG----CAGCAGCCTGCG
TGTAAACAATGGCAATGAC--------------ATTGTGCATTCTCACGTACGTGCCCCACCCCACCCCACCCCGGCGGC
GGCTACAAGCCTATAAAACCACGCACTGCCGTGCCTGGGCGTCCCGGCGATCAATCCATTGAA---TCTCTTCTAGTGCT
CGGAAACCGCAGACTC-----CCCGCCCAGCTATAGACAAGCGCGCGCCCCGATCGAAGGGATGGCCGGCACCGTTGAGG
ACAGCGGGAACACGGCGCCGTCGTCGCCGGCCGGGCTCCGCGGCGCCGACCTGGCCCTGAGGGTGCTTCTGTTCGCCGTC
TCGTTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATGGTGCCCCTGGTCCTGACGCCGCCGTTCAGATT
CGGGCCGGTGCCCGCCCAGTTCAAAGACTCGCCAGCGCTCATGTACGTGAGTTGATCGTC---ATGTCATACGTCTCTCC
TCTCCTACGGGAATTGATAA-CTTCCGCGTAGGAAC----GGTGCGTATAATAACATGGATTGCTGATGCTTATTGTGTG
CCCTGTCTACGTGTGGTTTGCAGTTATCTTCTTGTGGCGCTGTGCATGACGAGCTTGTATAGCCTTCTGACGGCCGCCAC
CTCGGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCCTCATTCTGCTTGATGTGGTCAGTATCT
T------------CTGCCTTGAATGATTTGTTCTCACATGTACTGTAGTTGCACGCAGGGCACAGCTTGATGTAACAATC
CTATCTATAACC-------ATGGCAGGTTTACGCGGGCATCATGGCGTCGGCGACGGGCACGGCGGGGGCCGTGGCCTGG
GTGGGGCTGAAGGGCAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTACGGCAAGTTCTGCCGGCACATCGGCAG
CGCCACCTGCCTCGGCCTCATCGCCTCCATCATCCTCGTCCTCCTCGTCGTCCTCAACGCCTACTCCCTCTACCGGAGAA
GCCGCTGATCGAACTAGGCGTCCAGCCCCGCTCCCTCCTCCGGCTGGCGGGACAAATTTCATGTGCCGTGCATGTCATCC
GTCGGCTTTGGTGAGCTCTGCCGGCCGGCGGTCAGTTGTATAAAAGATGCTACGTGTTCCTGTGGCTGTGGAGTGCTCTA
CGACATGCGTGTGTGCGTGCGTGTACATGTGCGTTGACGTTTATC-CTTGTTTGTTTCTACAACACGTTGCTTTGTGACA
GTAAGCACGACTTTTATCGGCCAAAATCACTGTTGTAACCTTTGTGGCATAGTTTAGCATGATTTAATTAACCCTGTTTT
GAGAAAAATGGATTTAACCTTTTTGCTATCGCCAACGGT------GGTAGGATTTAACGTAC---CACCAGGGTCTATGG
CACCAGAAACCTAGTCGTCGTCACGCTCATGC-------GGGCAAGTGGTTAGCACATTAAACCCTAGGCCGGCAT----
-ACGGTAGGCACCTAGAGGGGGTAAGTGAATGGGGAATG-GGTGGGCGGTAGGGCA----ACCCTACCACCAAGGTCCTC
A-CGGTACGGTAGTAAATTTAGCCCAAAATGGTACTGAAAGTTTCCGTACGTTTCTGCAGGCGGAAGGACATGTAACCCT
GCCACCAAGAACCTTGATGATGGGCCCATGTAGTCACTCCAGAGCTCATTTACCATTTTGTCTAGCACACAAT-------
------------------------------------------------T-------------------------------
------------------------AACATTCAAATTTCACCACACAACAATTGTCCATCACACAACAATTTGATCACAAA
TAGTTCAACATACCAAGTTCAA----------------------------CATAGCGTGTTCAACATACAAAGTTGGACA
CGACCAAATAGAAGGTTCTCAAATACTACATAGCAAGCAAGTGTCCATATTACTTTCTTTCCCTCTTGCTTAGACAATCC
TCAACTCTCTTTGTGCAACCCTCATTTGGTTTTAGGCCGCCTCGAGCA
>chr1D_645
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-----GAGAGCACGTGAACACACGCAAACCCAAACATATTCGCGGTGTGGATGAGACTGTCAATGCAGCGGACGCGATCG
TACTAGGTTG-CGTACAAACCGGGC-TACTTACAAGTCAAAGTCAGACATGCA-TGCGTACGTACTTACAGCAGCCTGCA
TGTAAACAAAGGCAGTAAC--------------AGCGTGCATTCT----CACGTGCCCCACCCCACCCCA-----GCGGC
GGCTACAAGCCTATAAAACCACGCACTGCCGTGCCACGACGTCCCGGCGATAGATCCATTAATAACTCTGTGCTAGAGCT
CATAAACCGCAGACTCCCCCGCCCGCCCAGCTATAGACAAGCGCGCGGCCCGACCGAAGGCATGGCCGGCACGGTGGAGG
ACAGCGGGAAGACGGCGCCGTCGTCTCCGGCCGGGCTCCGCGGCGCCGACCTGGGCCTGAGGGTGCTGCTGTTCGCCGTC
TCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATGGTGCCCCTGGTCCTGACGCCGCCGTTCAGATT
CGGGCCGGTCCCCGCCCAGTTCAAAGACTCGCCAGCGCTCATGTACGTGAGTCGATCGTCGTCATGTCATACCTACCTCC
TCTCCTACGGGCATTAATAAGCTTCCACGTTGGTACGTACGGTGGATATAGTAACATGGACTGTTGATGCTTATGGTGTG
CCCTATCTACGTGTGGTTTGCAGTTATCTTCTTGTGGCGCTGTGCATGACGAGCTTGTATAGCCTTGTGACGGCCGCCAG
CTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCCTCATTCTGCTTGATGTGGTGAGTATCT
TGTACATGAACTACTACCTTGAATGAATTGTTCTCACATGTGT---AGTCAC--------------------TAACAATC
CTATATATAACCATTAACTATGGCAGGTTTACGCGGGCATCATGGCGTCGGCGACGGGCACGGCGGGGGCCGTGGCCTGG
GTGGGGCTGAAGGGCAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTACGACAAGTTCTGCCGCCACATCGGCAG
CGCCACCTGCCTCGGCCTCATCGCTTCCATCCTCCTCGTCCTCCTCGTCGTCCTCAACGCCTACTCCCTCTACCGGAGAA
GCCGCTGATCGAACCAGGCGTCCAGCCCCACTCCTTCGTCCGGCTGGCGGGACATATTTCATGTGCCCTGCATGCCATCC
GTCGGCTTTGGTGAGCTTTGCCAGCGGGCGGTCAGTTGTATAAAAGATGCTACGTGTTCCTGTGGCTGTGGAGTGCTCTC
CGATA----------------TGTTCATGTGCGTTGATGTTTTAAACTTGTTTGTTTCTACAACACGTTGCTTTGTGACA
GTAAGCACGACTTTTATCGGTCAAAATCACGGTTCTGACCTTTGTGGCATAGTTTGGAACGATTGGACCCGTTCT-----
-AAAAAAACCGAATTTGACCATTTGCTATCGCCATCGTCCGCGACGGTAGGATTTAACGTACTGCCACCAGGATCTATGG
CGGTAGAAATCTGGTCGCTGTCACAGCACTCGTTGACGTGGACAAGTGGCTAGCACATTAAAACCTACGCCAGCGTCCTT
GGCGGTAGACACCTGAAGCGGGTAAGAGATTGGGGGCTTTGGTGGGCGGTAGGGCATGTAACCCTATTGCCAACGTCTAT
GGCGGTAGGGTACTAAATTTAGCTCAAAACGGTACTGAAAGTTCTCGTGCGTTTCTTTAGGCAGTAGGGCATGTAACCCT
ATCGCCAGGAAAGTGGCGGTA-GGCCCATGTAACCACTCCAGAGCTCATTTACCATTCTGACTAGCACACAAT-------
------------------------------------------------TGACATCAAATAACAATATAATTCAGTATAAC
AACAATATAATTGCGTATAACCATAACATTTAAATTCCACCACACAACAATTGTCCATCACTAAATAATTTGATCATAGA
TAGTTCA------------------------------------------ACATAGAGTGTTCAACATACCAAGTTCAACG
CAACCAAATAGAAGGTTCTCAAATACTACATAGCAAGCAAGTGTCCATATTACTTTCCTCCCCTCTTGCTTAGACGATCC
TCGGCTCTCTTTGTGCGGTCCTCATTTGGTTTGAGACCGCCTCGAGCA
>SNPs
SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
---------------------S------SS-S--S-S---S---S---------------S-----S--------S----
--------S----S--------S-------------SS------S-----S-----S-S--S-S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--S-S------SS-S---S-SSS-SSSS
SSSSS---------S--SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------------S-S--S----SS--S------S----------------------SSS--S-----------
-SS-------S-------S------S---------------------------S-------S----------------S-
---------S-----S-S-SSSSSSSSSSSSSS--------------S---------------SSSS-------------
-----------------------------------------S-S-------------S----------------------
-----------------------------------------S--------------------------------------
----------------------S---------S------S----------------------------------------
-----------------------------------------------S------S-------------------------
------------------------------------------------------------------S-------------
--------------------S------------------------------S---------------------------S
------------S-----S-------------S-----------------------------------------------
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-----------------------S-----------------------------------S---S-S----------S---
----S-S-------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------------S------------------------------------------------------------
----------------------------S---------------------------------S-----------------
---------------------S----------------------------------------------------------
------------------------------S-----------------------------------S-------------
--------------------------------------S-----------------------------------------
--------S---------------------------S---S-SS-------------------S----------------
----------S-----------S------------------------S----------------S--S------------
-----------S--S-------------------------S---------------------------------------
------------------------S------S----S----------S-S------------------------------
----------------------------------------------------------------------SS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
------------------------------------------S-------------------------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-
----------S--------S------------------------------------------------S-----------
-------------S-S----S---------------------------
>forward_313
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-----------------------------------------------------CGTGCCGGTAGGAGACATAC-------
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>reverse_2335
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--------------TGAGCGGGTAAGAGATTGGG----------------------------------------------
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