Multiple sequence alignment - TraesCS1B01G244300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G244300 chr1B 100.000 3429 0 0 1 3429 433596905 433600333 0.000000e+00 6333.0
1 TraesCS1B01G244300 chr1B 95.745 141 4 2 2883 3022 102627851 102627712 3.440000e-55 226.0
2 TraesCS1B01G244300 chr1B 96.269 134 5 0 2883 3016 372226385 372226518 1.600000e-53 220.0
3 TraesCS1B01G244300 chr1D 90.206 2430 120 51 327 2696 320581650 320584021 0.000000e+00 3061.0
4 TraesCS1B01G244300 chr1D 92.366 262 18 2 3168 3429 320585797 320586056 4.180000e-99 372.0
5 TraesCS1B01G244300 chr1D 82.232 439 46 10 1 431 320409012 320409426 1.960000e-92 350.0
6 TraesCS1B01G244300 chr1D 94.318 176 5 4 2714 2884 320584288 320584463 7.300000e-67 265.0
7 TraesCS1B01G244300 chr1A 91.982 2008 83 37 734 2690 402279076 402277096 0.000000e+00 2745.0
8 TraesCS1B01G244300 chr1A 84.884 258 31 4 14 265 402282340 402282085 1.580000e-63 254.0
9 TraesCS1B01G244300 chr1A 82.877 292 40 6 14 298 402797184 402796896 1.580000e-63 254.0
10 TraesCS1B01G244300 chr1A 94.048 168 3 5 2712 2872 402276821 402276654 7.350000e-62 248.0
11 TraesCS1B01G244300 chr1A 82.686 283 39 6 14 289 402281954 402281675 3.420000e-60 243.0
12 TraesCS1B01G244300 chr1A 83.333 252 36 4 1 247 402797571 402797321 9.570000e-56 228.0
13 TraesCS1B01G244300 chr1A 82.308 260 30 9 313 563 402281679 402281427 9.640000e-51 211.0
14 TraesCS1B01G244300 chr1A 85.833 120 14 1 315 431 402282453 402282334 1.290000e-24 124.0
15 TraesCS1B01G244300 chr1A 84.259 108 14 1 327 431 402282055 402281948 6.050000e-18 102.0
16 TraesCS1B01G244300 chr1A 93.220 59 4 0 3049 3107 487019763 487019821 1.700000e-13 87.9
17 TraesCS1B01G244300 chr1A 92.857 56 4 0 3050 3105 20239896 20239841 7.890000e-12 82.4
18 TraesCS1B01G244300 chr1A 92.982 57 3 1 3049 3105 58193099 58193044 7.890000e-12 82.4
19 TraesCS1B01G244300 chr7B 97.059 136 4 0 2880 3015 489146773 489146908 2.660000e-56 230.0
20 TraesCS1B01G244300 chr7B 95.455 132 6 0 2876 3007 133487101 133486970 9.640000e-51 211.0
21 TraesCS1B01G244300 chr7B 91.667 60 5 0 3046 3105 683446765 683446706 2.190000e-12 84.2
22 TraesCS1B01G244300 chr5B 98.438 128 2 0 2883 3010 555175727 555175600 3.440000e-55 226.0
23 TraesCS1B01G244300 chr5B 96.324 136 5 0 2879 3014 354511531 354511666 1.240000e-54 224.0
24 TraesCS1B01G244300 chr5B 90.476 63 4 1 3045 3105 229081664 229081726 7.890000e-12 82.4
25 TraesCS1B01G244300 chr4B 96.970 132 4 0 2877 3008 514055760 514055891 4.450000e-54 222.0
26 TraesCS1B01G244300 chr6B 96.269 134 5 0 2875 3008 68120697 68120830 1.600000e-53 220.0
27 TraesCS1B01G244300 chr3B 90.123 162 11 5 2856 3013 527239544 527239384 4.490000e-49 206.0
28 TraesCS1B01G244300 chr2A 94.643 56 3 0 3050 3105 108260273 108260328 1.700000e-13 87.9
29 TraesCS1B01G244300 chr7D 94.444 54 3 0 3052 3105 581452041 581451988 2.190000e-12 84.2
30 TraesCS1B01G244300 chr7A 92.857 56 4 0 3050 3105 20757510 20757565 7.890000e-12 82.4
31 TraesCS1B01G244300 chr3D 91.525 59 5 0 3047 3105 311870950 311870892 7.890000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G244300 chr1B 433596905 433600333 3428 False 6333.000000 6333 100.000000 1 3429 1 chr1B.!!$F2 3428
1 TraesCS1B01G244300 chr1D 320581650 320586056 4406 False 1232.666667 3061 92.296667 327 3429 3 chr1D.!!$F2 3102
2 TraesCS1B01G244300 chr1A 402276654 402282453 5799 True 561.000000 2745 86.571429 14 2872 7 chr1A.!!$R3 2858
3 TraesCS1B01G244300 chr1A 402796896 402797571 675 True 241.000000 254 83.105000 1 298 2 chr1A.!!$R4 297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 1109 0.106569 TGCACATGGCCTTATGAGGG 60.107 55.0 9.94 1.06 43.75 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2468 5209 0.537188 AGGACGCGGATTGTGAATCT 59.463 50.0 12.47 0.0 38.01 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 182 1.674359 ATCCGTGTTTGCACAACTCA 58.326 45.000 11.34 0.00 45.50 3.41
88 189 4.975502 CGTGTTTGCACAACTCATAACATT 59.024 37.500 11.34 0.00 45.50 2.71
127 229 6.958752 GTGTTGTTTGTTGTTGCCTTTTTATC 59.041 34.615 0.00 0.00 0.00 1.75
159 261 3.264193 TGTGTCAATCTGCTAGGGTGATT 59.736 43.478 0.00 0.00 0.00 2.57
160 262 3.624861 GTGTCAATCTGCTAGGGTGATTG 59.375 47.826 8.19 8.19 44.76 2.67
161 263 3.264193 TGTCAATCTGCTAGGGTGATTGT 59.736 43.478 12.61 0.00 44.16 2.71
163 265 5.053145 GTCAATCTGCTAGGGTGATTGTAG 58.947 45.833 12.61 0.00 44.16 2.74
166 268 6.382859 TCAATCTGCTAGGGTGATTGTAGTAA 59.617 38.462 12.61 0.00 44.16 2.24
167 269 7.071196 TCAATCTGCTAGGGTGATTGTAGTAAT 59.929 37.037 12.61 0.00 44.16 1.89
168 270 8.367911 CAATCTGCTAGGGTGATTGTAGTAATA 58.632 37.037 0.00 0.00 40.97 0.98
172 274 9.561069 CTGCTAGGGTGATTGTAGTAATATTTT 57.439 33.333 0.00 0.00 0.00 1.82
173 275 9.337396 TGCTAGGGTGATTGTAGTAATATTTTG 57.663 33.333 0.00 0.00 0.00 2.44
215 321 8.496872 ACAGAAAAACAATTACGGATTTAACG 57.503 30.769 0.00 0.00 37.36 3.18
217 323 7.804129 CAGAAAAACAATTACGGATTTAACGGA 59.196 33.333 0.00 0.00 35.23 4.69
218 324 7.804600 AGAAAAACAATTACGGATTTAACGGAC 59.195 33.333 0.00 0.00 35.23 4.79
226 332 4.248058 ACGGATTTAACGGACTTGGTTAG 58.752 43.478 0.00 0.00 32.01 2.34
227 333 4.021192 ACGGATTTAACGGACTTGGTTAGA 60.021 41.667 0.00 0.00 32.01 2.10
230 336 6.110707 GGATTTAACGGACTTGGTTAGATGA 58.889 40.000 0.00 0.00 32.01 2.92
232 338 7.120138 GGATTTAACGGACTTGGTTAGATGAAA 59.880 37.037 0.00 0.00 32.01 2.69
233 339 7.989416 TTTAACGGACTTGGTTAGATGAAAT 57.011 32.000 0.00 0.00 32.01 2.17
257 363 5.878406 TTAGGATTGAAGCTAAGGAGGAG 57.122 43.478 0.00 0.00 0.00 3.69
285 391 1.562475 CCCCACCCCTTCGAAATTAGA 59.438 52.381 0.00 0.00 0.00 2.10
286 392 2.421529 CCCCACCCCTTCGAAATTAGAG 60.422 54.545 0.00 0.00 0.00 2.43
287 393 2.421529 CCCACCCCTTCGAAATTAGAGG 60.422 54.545 0.00 0.00 0.00 3.69
315 421 2.327200 GGGGGTATTCTCGAAACAGG 57.673 55.000 0.00 0.00 0.00 4.00
316 422 1.134189 GGGGGTATTCTCGAAACAGGG 60.134 57.143 0.00 0.00 0.00 4.45
317 423 1.835531 GGGGTATTCTCGAAACAGGGA 59.164 52.381 0.00 0.00 0.00 4.20
318 424 2.158943 GGGGTATTCTCGAAACAGGGAG 60.159 54.545 0.00 0.00 0.00 4.30
319 425 2.158943 GGGTATTCTCGAAACAGGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
320 426 2.764572 GGTATTCTCGAAACAGGGAGGA 59.235 50.000 0.00 0.00 0.00 3.71
321 427 3.181474 GGTATTCTCGAAACAGGGAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
322 428 2.304221 TTCTCGAAACAGGGAGGAGA 57.696 50.000 0.00 0.00 32.30 3.71
323 429 1.840737 TCTCGAAACAGGGAGGAGAG 58.159 55.000 0.00 0.00 30.75 3.20
324 430 1.354705 TCTCGAAACAGGGAGGAGAGA 59.645 52.381 0.00 0.00 30.75 3.10
325 431 2.171840 CTCGAAACAGGGAGGAGAGAA 58.828 52.381 0.00 0.00 0.00 2.87
374 480 2.223803 AGATCGCCCATAGGTCTAGG 57.776 55.000 0.00 0.00 34.57 3.02
380 486 4.023980 TCGCCCATAGGTCTAGGATTATG 58.976 47.826 0.00 0.00 34.57 1.90
391 497 8.980832 AGGTCTAGGATTATGGTTTGAGATAT 57.019 34.615 0.00 0.00 0.00 1.63
392 498 9.041354 AGGTCTAGGATTATGGTTTGAGATATC 57.959 37.037 0.00 0.00 0.00 1.63
422 531 5.753438 CCTATGTGATTGTAATAGCGTGTGT 59.247 40.000 0.00 0.00 0.00 3.72
432 541 9.929180 ATTGTAATAGCGTGTGTCATTATATCT 57.071 29.630 0.00 0.00 0.00 1.98
516 1019 8.554835 TTTGAGATAAATGTTTATCCGTGTGA 57.445 30.769 17.50 2.61 46.40 3.58
520 1023 8.506168 AGATAAATGTTTATCCGTGTGACAAT 57.494 30.769 17.50 0.00 46.40 2.71
525 1028 9.921637 AAATGTTTATCCGTGTGACAATATTTT 57.078 25.926 0.00 0.00 0.00 1.82
527 1030 8.735303 TGTTTATCCGTGTGACAATATTTTTG 57.265 30.769 0.00 0.00 0.00 2.44
528 1031 8.568794 TGTTTATCCGTGTGACAATATTTTTGA 58.431 29.630 0.00 0.00 0.00 2.69
529 1032 9.061610 GTTTATCCGTGTGACAATATTTTTGAG 57.938 33.333 0.00 0.00 0.00 3.02
530 1033 8.554835 TTATCCGTGTGACAATATTTTTGAGA 57.445 30.769 0.00 0.00 0.00 3.27
531 1034 7.630242 ATCCGTGTGACAATATTTTTGAGAT 57.370 32.000 0.00 0.00 0.00 2.75
533 1036 6.429692 TCCGTGTGACAATATTTTTGAGATGT 59.570 34.615 0.00 0.00 0.00 3.06
534 1037 7.604545 TCCGTGTGACAATATTTTTGAGATGTA 59.395 33.333 0.00 0.00 0.00 2.29
535 1038 7.692291 CCGTGTGACAATATTTTTGAGATGTAC 59.308 37.037 0.00 0.00 0.00 2.90
553 1056 7.324178 AGATGTACTGTAATTGTGTTCTCTCC 58.676 38.462 0.00 0.00 0.00 3.71
557 1060 5.941788 ACTGTAATTGTGTTCTCTCCCTTT 58.058 37.500 0.00 0.00 0.00 3.11
558 1061 7.074653 ACTGTAATTGTGTTCTCTCCCTTTA 57.925 36.000 0.00 0.00 0.00 1.85
559 1062 7.514721 ACTGTAATTGTGTTCTCTCCCTTTAA 58.485 34.615 0.00 0.00 0.00 1.52
560 1063 7.996644 ACTGTAATTGTGTTCTCTCCCTTTAAA 59.003 33.333 0.00 0.00 0.00 1.52
561 1064 8.161699 TGTAATTGTGTTCTCTCCCTTTAAAC 57.838 34.615 0.00 0.00 0.00 2.01
562 1065 7.776030 TGTAATTGTGTTCTCTCCCTTTAAACA 59.224 33.333 0.00 0.00 0.00 2.83
563 1066 6.635030 ATTGTGTTCTCTCCCTTTAAACAC 57.365 37.500 9.16 9.16 46.13 3.32
564 1067 4.457466 TGTGTTCTCTCCCTTTAAACACC 58.543 43.478 12.53 0.00 45.64 4.16
565 1068 3.497262 GTGTTCTCTCCCTTTAAACACCG 59.503 47.826 5.58 0.00 42.29 4.94
566 1069 3.388676 TGTTCTCTCCCTTTAAACACCGA 59.611 43.478 0.00 0.00 0.00 4.69
567 1070 4.041198 TGTTCTCTCCCTTTAAACACCGAT 59.959 41.667 0.00 0.00 0.00 4.18
568 1071 5.246656 TGTTCTCTCCCTTTAAACACCGATA 59.753 40.000 0.00 0.00 0.00 2.92
569 1072 6.070424 TGTTCTCTCCCTTTAAACACCGATAT 60.070 38.462 0.00 0.00 0.00 1.63
570 1073 5.914033 TCTCTCCCTTTAAACACCGATATG 58.086 41.667 0.00 0.00 0.00 1.78
571 1074 4.448210 TCTCCCTTTAAACACCGATATGC 58.552 43.478 0.00 0.00 0.00 3.14
572 1075 4.080807 TCTCCCTTTAAACACCGATATGCA 60.081 41.667 0.00 0.00 0.00 3.96
587 1090 2.511600 GCATAAGCACCCGACGCT 60.512 61.111 0.00 0.00 42.98 5.07
602 1105 1.357690 CGCTGCACATGGCCTTATG 59.642 57.895 3.32 2.28 43.89 1.90
604 1107 0.666913 GCTGCACATGGCCTTATGAG 59.333 55.000 9.94 3.33 43.89 2.90
606 1109 0.106569 TGCACATGGCCTTATGAGGG 60.107 55.000 9.94 1.06 43.75 4.30
696 1784 1.067749 TTGTGTTGTGCCTGCATGC 59.932 52.632 11.82 11.82 0.00 4.06
697 1785 1.673808 TTGTGTTGTGCCTGCATGCA 61.674 50.000 21.29 21.29 39.37 3.96
698 1786 1.290955 GTGTTGTGCCTGCATGCAT 59.709 52.632 22.97 0.00 44.30 3.96
699 1787 1.011968 GTGTTGTGCCTGCATGCATG 61.012 55.000 22.97 22.70 44.30 4.06
732 3435 2.225496 ACTGGGAGGAGTGAGAGACAAT 60.225 50.000 0.00 0.00 0.00 2.71
783 3486 9.092322 CCTCGTTTCAATCGAATAAAATAATCG 57.908 33.333 0.00 0.00 36.89 3.34
784 3487 9.632969 CTCGTTTCAATCGAATAAAATAATCGT 57.367 29.630 0.00 0.00 37.79 3.73
915 3618 1.067985 CATCATCTCATCCGTCTCCCG 60.068 57.143 0.00 0.00 0.00 5.14
916 3619 1.006805 CATCTCATCCGTCTCCCGC 60.007 63.158 0.00 0.00 34.38 6.13
917 3620 1.455773 ATCTCATCCGTCTCCCGCA 60.456 57.895 0.00 0.00 34.38 5.69
918 3621 1.459455 ATCTCATCCGTCTCCCGCAG 61.459 60.000 0.00 0.00 34.38 5.18
919 3622 3.781770 CTCATCCGTCTCCCGCAGC 62.782 68.421 0.00 0.00 34.38 5.25
920 3623 4.899239 CATCCGTCTCCCGCAGCC 62.899 72.222 0.00 0.00 34.38 4.85
961 3669 0.666374 CCACCACAGAAAAACGGACC 59.334 55.000 0.00 0.00 0.00 4.46
966 3674 1.746220 CACAGAAAAACGGACCCAACA 59.254 47.619 0.00 0.00 0.00 3.33
967 3675 1.746787 ACAGAAAAACGGACCCAACAC 59.253 47.619 0.00 0.00 0.00 3.32
968 3676 1.746220 CAGAAAAACGGACCCAACACA 59.254 47.619 0.00 0.00 0.00 3.72
969 3677 2.164624 CAGAAAAACGGACCCAACACAA 59.835 45.455 0.00 0.00 0.00 3.33
993 3701 1.877443 GAAAGTTAAACCAGCCTCGCA 59.123 47.619 0.00 0.00 0.00 5.10
994 3702 1.975660 AAGTTAAACCAGCCTCGCAA 58.024 45.000 0.00 0.00 0.00 4.85
1114 3830 3.873883 GGAGATCGCCGTCGTCGT 61.874 66.667 0.00 0.00 36.96 4.34
1148 3867 4.400961 GACGGCAAGGAGGCTGCT 62.401 66.667 1.28 1.28 44.09 4.24
1175 3897 2.442272 GAGGAGGTGGAGCCGCTA 60.442 66.667 0.00 0.00 43.70 4.26
1763 4491 2.567497 CGTGGTGTCAGGTACCCGT 61.567 63.158 8.74 0.00 37.40 5.28
2188 4916 3.827898 GCTCTACGCCTGACCGCT 61.828 66.667 0.00 0.00 0.00 5.52
2243 4971 4.790962 AGGCATGCCACGCTCTGG 62.791 66.667 37.18 0.00 44.08 3.86
2251 4979 1.450134 CCACGCTCTGGCATTGCTA 60.450 57.895 8.82 0.75 38.60 3.49
2273 5001 0.598419 TCGATCGCCAAGCAGCATAG 60.598 55.000 11.09 0.00 0.00 2.23
2383 5115 9.530633 GTATCTTTTCATCCGATGTAGTAACTT 57.469 33.333 8.24 0.00 0.00 2.66
2417 5149 9.577110 TGCTTAGCATAAAAGAAGAATGAAATG 57.423 29.630 1.39 0.00 31.71 2.32
2418 5150 9.028185 GCTTAGCATAAAAGAAGAATGAAATGG 57.972 33.333 0.00 0.00 0.00 3.16
2452 5190 5.565592 ACAACATTGGCGCCATATATATG 57.434 39.130 33.25 30.20 0.00 1.78
2468 5209 7.122204 CCATATATATGTACCCTGACGAGTTCA 59.878 40.741 19.11 0.00 31.82 3.18
2517 5261 7.227314 CAGCTATGTTCTGCAATTAGAATACCA 59.773 37.037 0.00 0.00 38.79 3.25
2527 5271 6.017440 TGCAATTAGAATACCAATTACGCTCC 60.017 38.462 0.00 0.00 0.00 4.70
2528 5272 6.017440 GCAATTAGAATACCAATTACGCTCCA 60.017 38.462 0.00 0.00 0.00 3.86
2529 5273 7.352739 CAATTAGAATACCAATTACGCTCCAC 58.647 38.462 0.00 0.00 0.00 4.02
2530 5274 4.481368 AGAATACCAATTACGCTCCACA 57.519 40.909 0.00 0.00 0.00 4.17
2533 5277 2.561478 ACCAATTACGCTCCACACTT 57.439 45.000 0.00 0.00 0.00 3.16
2534 5278 2.151202 ACCAATTACGCTCCACACTTG 58.849 47.619 0.00 0.00 0.00 3.16
2535 5279 1.135689 CCAATTACGCTCCACACTTGC 60.136 52.381 0.00 0.00 0.00 4.01
2536 5280 1.806542 CAATTACGCTCCACACTTGCT 59.193 47.619 0.00 0.00 0.00 3.91
2538 5282 2.363788 TTACGCTCCACACTTGCTAG 57.636 50.000 0.00 0.00 0.00 3.42
2539 5283 0.530744 TACGCTCCACACTTGCTAGG 59.469 55.000 0.00 0.00 0.00 3.02
2635 5394 1.956477 ACAACTTGCAAGTTAGGGCTG 59.044 47.619 37.19 28.15 46.89 4.85
2667 5426 3.243873 GGATCCATGCGTGTCAGAGATTA 60.244 47.826 6.95 0.00 0.00 1.75
2669 5428 1.854743 CCATGCGTGTCAGAGATTACG 59.145 52.381 4.96 0.00 39.37 3.18
2704 5466 9.790344 AATCAAAATTACCCAAAATGACATCAA 57.210 25.926 0.00 0.00 0.00 2.57
2705 5467 8.830201 TCAAAATTACCCAAAATGACATCAAG 57.170 30.769 0.00 0.00 0.00 3.02
2706 5468 8.428063 TCAAAATTACCCAAAATGACATCAAGT 58.572 29.630 0.00 0.00 0.00 3.16
2709 5471 9.927668 AAATTACCCAAAATGACATCAAGTTAG 57.072 29.630 0.00 0.00 0.00 2.34
2886 5940 7.404671 TTTTGAGTAATTCCTTAATGCTCCC 57.595 36.000 0.00 0.00 31.82 4.30
2887 5941 5.975988 TGAGTAATTCCTTAATGCTCCCT 57.024 39.130 0.00 0.00 31.82 4.20
2888 5942 5.930135 TGAGTAATTCCTTAATGCTCCCTC 58.070 41.667 0.00 0.00 31.82 4.30
2889 5943 5.163195 TGAGTAATTCCTTAATGCTCCCTCC 60.163 44.000 0.00 0.00 31.82 4.30
2890 5944 2.938956 ATTCCTTAATGCTCCCTCCG 57.061 50.000 0.00 0.00 0.00 4.63
2891 5945 1.580059 TTCCTTAATGCTCCCTCCGT 58.420 50.000 0.00 0.00 0.00 4.69
2892 5946 1.120530 TCCTTAATGCTCCCTCCGTC 58.879 55.000 0.00 0.00 0.00 4.79
2893 5947 0.106894 CCTTAATGCTCCCTCCGTCC 59.893 60.000 0.00 0.00 0.00 4.79
2894 5948 0.249489 CTTAATGCTCCCTCCGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
2895 5949 1.682451 TTAATGCTCCCTCCGTCCGG 61.682 60.000 0.00 0.00 0.00 5.14
2896 5950 2.577020 TAATGCTCCCTCCGTCCGGA 62.577 60.000 0.00 0.00 42.90 5.14
2897 5951 3.976490 ATGCTCCCTCCGTCCGGAA 62.976 63.158 5.23 0.00 44.66 4.30
2898 5952 3.387947 GCTCCCTCCGTCCGGAAA 61.388 66.667 5.23 0.00 44.66 3.13
2899 5953 2.732619 GCTCCCTCCGTCCGGAAAT 61.733 63.158 5.23 0.00 44.66 2.17
2900 5954 1.397390 GCTCCCTCCGTCCGGAAATA 61.397 60.000 5.23 0.00 44.66 1.40
2901 5955 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2902 5956 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2903 5957 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2904 5958 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2905 5959 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2906 5960 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2907 5961 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2908 5962 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2909 5963 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2910 5964 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2911 5965 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2912 5966 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2913 5967 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2914 5968 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2915 5969 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2916 5970 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2917 5971 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2918 5972 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2926 5980 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
2927 5981 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
2928 5982 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
2929 5983 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
2930 5984 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
2931 5985 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
2934 5988 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2940 5994 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
2948 6002 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
2964 6018 9.670442 TGTATTTTAGTTCTAGATACATCCCCT 57.330 33.333 0.00 0.00 30.60 4.79
2968 6022 9.681062 TTTTAGTTCTAGATACATCCCCTTTTG 57.319 33.333 0.00 0.00 0.00 2.44
2969 6023 6.893020 AGTTCTAGATACATCCCCTTTTGT 57.107 37.500 0.00 0.00 0.00 2.83
2970 6024 6.890293 AGTTCTAGATACATCCCCTTTTGTC 58.110 40.000 0.00 0.00 0.00 3.18
2971 6025 5.888982 TCTAGATACATCCCCTTTTGTCC 57.111 43.478 0.00 0.00 0.00 4.02
2972 6026 5.285401 TCTAGATACATCCCCTTTTGTCCA 58.715 41.667 0.00 0.00 0.00 4.02
2973 6027 5.911178 TCTAGATACATCCCCTTTTGTCCAT 59.089 40.000 0.00 0.00 0.00 3.41
2974 6028 5.472301 AGATACATCCCCTTTTGTCCATT 57.528 39.130 0.00 0.00 0.00 3.16
2975 6029 5.842339 AGATACATCCCCTTTTGTCCATTT 58.158 37.500 0.00 0.00 0.00 2.32
2976 6030 6.263754 AGATACATCCCCTTTTGTCCATTTT 58.736 36.000 0.00 0.00 0.00 1.82
2977 6031 4.622260 ACATCCCCTTTTGTCCATTTTG 57.378 40.909 0.00 0.00 0.00 2.44
2978 6032 4.230455 ACATCCCCTTTTGTCCATTTTGA 58.770 39.130 0.00 0.00 0.00 2.69
2979 6033 4.845796 ACATCCCCTTTTGTCCATTTTGAT 59.154 37.500 0.00 0.00 0.00 2.57
2980 6034 4.888326 TCCCCTTTTGTCCATTTTGATG 57.112 40.909 0.00 0.00 0.00 3.07
2981 6035 4.487804 TCCCCTTTTGTCCATTTTGATGA 58.512 39.130 0.00 0.00 0.00 2.92
2982 6036 4.283212 TCCCCTTTTGTCCATTTTGATGAC 59.717 41.667 0.00 0.00 0.00 3.06
2983 6037 4.040217 CCCCTTTTGTCCATTTTGATGACA 59.960 41.667 0.00 0.00 0.00 3.58
2984 6038 5.454471 CCCCTTTTGTCCATTTTGATGACAA 60.454 40.000 0.00 0.00 34.47 3.18
2985 6039 5.697633 CCCTTTTGTCCATTTTGATGACAAG 59.302 40.000 0.00 0.00 37.13 3.16
2986 6040 6.282930 CCTTTTGTCCATTTTGATGACAAGT 58.717 36.000 0.00 0.00 37.13 3.16
2987 6041 7.432869 CCTTTTGTCCATTTTGATGACAAGTA 58.567 34.615 0.00 0.00 37.13 2.24
2988 6042 8.090214 CCTTTTGTCCATTTTGATGACAAGTAT 58.910 33.333 0.00 0.00 37.13 2.12
2989 6043 9.480053 CTTTTGTCCATTTTGATGACAAGTATT 57.520 29.630 0.00 0.00 37.13 1.89
2990 6044 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
2991 6045 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
2992 6046 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
2993 6047 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
2994 6048 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
2995 6049 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2996 6050 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2997 6051 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2998 6052 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2999 6053 2.070783 TGACAAGTATTTTCGGACGGC 58.929 47.619 0.00 0.00 0.00 5.68
3000 6054 1.060122 GACAAGTATTTTCGGACGGCG 59.940 52.381 4.80 4.80 0.00 6.46
3001 6055 0.372334 CAAGTATTTTCGGACGGCGG 59.628 55.000 13.24 0.00 0.00 6.13
3002 6056 0.741927 AAGTATTTTCGGACGGCGGG 60.742 55.000 13.24 0.00 0.00 6.13
3003 6057 1.153588 GTATTTTCGGACGGCGGGA 60.154 57.895 13.24 2.15 0.00 5.14
3004 6058 1.142314 TATTTTCGGACGGCGGGAG 59.858 57.895 13.24 1.04 0.00 4.30
3013 6067 1.956477 GGACGGCGGGAGTACTTAATA 59.044 52.381 13.24 0.00 0.00 0.98
3037 6091 4.127171 GGCATACAATCACGATACAACCT 58.873 43.478 0.00 0.00 0.00 3.50
3041 6095 1.999735 CAATCACGATACAACCTGCGT 59.000 47.619 0.00 0.00 37.48 5.24
3049 6103 4.387862 ACGATACAACCTGCGTTAGAAAAG 59.612 41.667 0.00 0.00 32.42 2.27
3050 6104 4.648970 GATACAACCTGCGTTAGAAAAGC 58.351 43.478 0.00 0.00 0.00 3.51
3051 6105 1.263217 ACAACCTGCGTTAGAAAAGCG 59.737 47.619 0.00 0.00 0.00 4.68
3053 6107 1.873698 ACCTGCGTTAGAAAAGCGAA 58.126 45.000 0.00 0.00 0.00 4.70
3054 6108 1.529865 ACCTGCGTTAGAAAAGCGAAC 59.470 47.619 0.00 0.00 0.00 3.95
3055 6109 1.136057 CCTGCGTTAGAAAAGCGAACC 60.136 52.381 0.00 0.00 0.00 3.62
3057 6111 1.941294 TGCGTTAGAAAAGCGAACCAA 59.059 42.857 0.00 0.00 0.00 3.67
3058 6112 2.286536 TGCGTTAGAAAAGCGAACCAAC 60.287 45.455 0.00 0.00 0.00 3.77
3059 6113 2.286536 GCGTTAGAAAAGCGAACCAACA 60.287 45.455 0.00 0.00 0.00 3.33
3060 6114 3.608474 GCGTTAGAAAAGCGAACCAACAT 60.608 43.478 0.00 0.00 0.00 2.71
3061 6115 3.906008 CGTTAGAAAAGCGAACCAACATG 59.094 43.478 0.00 0.00 0.00 3.21
3063 6117 3.354089 AGAAAAGCGAACCAACATGTG 57.646 42.857 0.00 0.00 0.00 3.21
3077 6131 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
3078 6132 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
3080 6134 3.417069 TGTGGTTGGATGGTTAGAGTG 57.583 47.619 0.00 0.00 0.00 3.51
3081 6135 2.976185 TGTGGTTGGATGGTTAGAGTGA 59.024 45.455 0.00 0.00 0.00 3.41
3083 6137 3.008049 GTGGTTGGATGGTTAGAGTGACT 59.992 47.826 0.00 0.00 0.00 3.41
3084 6138 3.007940 TGGTTGGATGGTTAGAGTGACTG 59.992 47.826 0.00 0.00 0.00 3.51
3085 6139 3.008049 GGTTGGATGGTTAGAGTGACTGT 59.992 47.826 0.00 0.00 0.00 3.55
3086 6140 3.961480 TGGATGGTTAGAGTGACTGTG 57.039 47.619 0.00 0.00 0.00 3.66
3087 6141 3.506398 TGGATGGTTAGAGTGACTGTGA 58.494 45.455 0.00 0.00 0.00 3.58
3088 6142 4.096681 TGGATGGTTAGAGTGACTGTGAT 58.903 43.478 0.00 0.00 0.00 3.06
3089 6143 5.269189 TGGATGGTTAGAGTGACTGTGATA 58.731 41.667 0.00 0.00 0.00 2.15
3091 6145 6.040955 TGGATGGTTAGAGTGACTGTGATATC 59.959 42.308 0.00 0.00 0.00 1.63
3092 6146 5.854010 TGGTTAGAGTGACTGTGATATCC 57.146 43.478 0.00 0.00 0.00 2.59
3093 6147 4.649674 TGGTTAGAGTGACTGTGATATCCC 59.350 45.833 0.00 0.00 0.00 3.85
3095 6149 3.404869 AGAGTGACTGTGATATCCCCA 57.595 47.619 0.00 0.00 0.00 4.96
3096 6150 3.303938 AGAGTGACTGTGATATCCCCAG 58.696 50.000 14.69 14.69 0.00 4.45
3097 6151 3.034635 GAGTGACTGTGATATCCCCAGT 58.965 50.000 19.54 19.54 41.90 4.00
3102 6156 3.577919 ACTGTGATATCCCCAGTCTACC 58.422 50.000 15.71 0.00 34.44 3.18
3104 6158 3.576118 CTGTGATATCCCCAGTCTACCAG 59.424 52.174 0.00 0.00 0.00 4.00
3105 6159 3.206639 TGTGATATCCCCAGTCTACCAGA 59.793 47.826 0.00 0.00 0.00 3.86
3106 6160 3.829601 GTGATATCCCCAGTCTACCAGAG 59.170 52.174 0.00 0.00 0.00 3.35
3108 6162 4.170053 TGATATCCCCAGTCTACCAGAGAA 59.830 45.833 0.00 0.00 35.37 2.87
3109 6163 2.534042 TCCCCAGTCTACCAGAGAAG 57.466 55.000 0.00 0.00 35.37 2.85
3111 6165 2.104170 CCCCAGTCTACCAGAGAAGAC 58.896 57.143 0.00 0.00 42.02 3.01
3113 6167 3.370104 CCCAGTCTACCAGAGAAGACAT 58.630 50.000 5.38 0.00 43.74 3.06
3114 6168 3.383185 CCCAGTCTACCAGAGAAGACATC 59.617 52.174 5.38 0.00 43.74 3.06
3115 6169 3.383185 CCAGTCTACCAGAGAAGACATCC 59.617 52.174 5.38 0.00 43.74 3.51
3116 6170 3.383185 CAGTCTACCAGAGAAGACATCCC 59.617 52.174 5.38 0.00 43.74 3.85
3117 6171 2.696187 GTCTACCAGAGAAGACATCCCC 59.304 54.545 0.00 0.00 41.46 4.81
3118 6172 1.683917 CTACCAGAGAAGACATCCCCG 59.316 57.143 0.00 0.00 0.00 5.73
3119 6173 0.252284 ACCAGAGAAGACATCCCCGT 60.252 55.000 0.00 0.00 0.00 5.28
3121 6175 1.406069 CCAGAGAAGACATCCCCGTTG 60.406 57.143 0.00 0.00 0.00 4.10
3123 6177 1.550976 AGAGAAGACATCCCCGTTGAC 59.449 52.381 0.00 0.00 0.00 3.18
3124 6178 0.246635 AGAAGACATCCCCGTTGACG 59.753 55.000 0.00 0.00 39.44 4.35
3126 6180 0.037605 AAGACATCCCCGTTGACGAC 60.038 55.000 4.91 0.00 43.02 4.34
3158 7284 2.050985 GCGCATAAATGAGCCGCC 60.051 61.111 0.30 0.00 45.96 6.13
3163 7289 2.476686 CGCATAAATGAGCCGCCATATG 60.477 50.000 0.00 0.00 0.00 1.78
3165 7291 3.191162 GCATAAATGAGCCGCCATATGAA 59.809 43.478 3.65 0.00 0.00 2.57
3166 7292 4.142315 GCATAAATGAGCCGCCATATGAAT 60.142 41.667 3.65 0.00 0.00 2.57
3167 7293 5.622914 GCATAAATGAGCCGCCATATGAATT 60.623 40.000 3.65 0.00 0.00 2.17
3168 7294 6.404623 GCATAAATGAGCCGCCATATGAATTA 60.405 38.462 3.65 0.00 0.00 1.40
3170 7296 3.483808 TGAGCCGCCATATGAATTACA 57.516 42.857 3.65 0.00 0.00 2.41
3171 7297 3.138304 TGAGCCGCCATATGAATTACAC 58.862 45.455 3.65 0.00 0.00 2.90
3188 7412 7.669722 TGAATTACACCCTAAAGCTCTGAAAAT 59.330 33.333 0.00 0.00 0.00 1.82
3196 7420 2.299326 AGCTCTGAAAATGCCCACTT 57.701 45.000 0.00 0.00 0.00 3.16
3198 7422 1.888512 GCTCTGAAAATGCCCACTTGA 59.111 47.619 0.00 0.00 0.00 3.02
3221 7445 5.468540 TTCTTTGATCTCCTGAAGAACGA 57.531 39.130 0.00 0.00 37.61 3.85
3253 7477 1.884004 ACGACCAAAACCGTCCGTG 60.884 57.895 0.00 0.00 33.23 4.94
3255 7479 1.824272 CGACCAAAACCGTCCGTGTC 61.824 60.000 0.00 0.00 0.00 3.67
3292 7516 0.449388 GCCATCCAAGTTGAGAAGCG 59.551 55.000 3.87 0.00 0.00 4.68
3300 7524 0.394565 AGTTGAGAAGCGGCTTGTCT 59.605 50.000 31.61 20.00 35.24 3.41
3359 7583 1.672356 CAGTCCTCCCAAGTTGCCG 60.672 63.158 0.00 0.00 0.00 5.69
3361 7585 3.565214 TCCTCCCAAGTTGCCGCA 61.565 61.111 0.00 0.00 0.00 5.69
3390 7614 2.346803 CTCACCAATGGTCCTTACACG 58.653 52.381 0.00 0.00 31.02 4.49
3396 7620 2.505557 GGTCCTTACACGACCGCG 60.506 66.667 0.00 0.00 40.46 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 126 6.158871 TCTCACTCCTAGGAGAGAAGAACATA 59.841 42.308 39.72 15.86 44.53 2.29
40 141 5.516059 TTAGAAGACCACTCTCACTCCTA 57.484 43.478 0.00 0.00 0.00 2.94
41 142 2.990740 AGAAGACCACTCTCACTCCT 57.009 50.000 0.00 0.00 0.00 3.69
51 152 3.120304 GCAAACACGGATTAGAAGACCAC 60.120 47.826 0.00 0.00 0.00 4.16
94 195 5.176590 GCAACAACAAACAACACAAAAGAGA 59.823 36.000 0.00 0.00 0.00 3.10
103 204 6.650807 TGATAAAAAGGCAACAACAAACAACA 59.349 30.769 0.00 0.00 41.41 3.33
127 229 3.181503 GCAGATTGACACATGCTAGGTTG 60.182 47.826 0.00 0.00 35.78 3.77
167 269 9.534565 CTGTAGCTCTAGCATTACTTCAAAATA 57.465 33.333 4.54 0.00 45.16 1.40
168 270 8.260818 TCTGTAGCTCTAGCATTACTTCAAAAT 58.739 33.333 4.54 0.00 45.16 1.82
172 274 6.775594 TTCTGTAGCTCTAGCATTACTTCA 57.224 37.500 4.54 0.00 45.16 3.02
173 275 8.384365 GTTTTTCTGTAGCTCTAGCATTACTTC 58.616 37.037 4.54 0.00 45.16 3.01
230 336 8.949421 TCCTCCTTAGCTTCAATCCTAATATTT 58.051 33.333 0.00 0.00 0.00 1.40
232 338 7.181845 CCTCCTCCTTAGCTTCAATCCTAATAT 59.818 40.741 0.00 0.00 0.00 1.28
233 339 6.498651 CCTCCTCCTTAGCTTCAATCCTAATA 59.501 42.308 0.00 0.00 0.00 0.98
246 352 1.460497 CCCCTCCCTCCTCCTTAGC 60.460 68.421 0.00 0.00 0.00 3.09
299 405 2.764572 TCCTCCCTGTTTCGAGAATACC 59.235 50.000 0.00 0.00 0.00 2.73
300 406 3.700038 TCTCCTCCCTGTTTCGAGAATAC 59.300 47.826 0.00 0.00 0.00 1.89
301 407 3.954904 CTCTCCTCCCTGTTTCGAGAATA 59.045 47.826 0.00 0.00 0.00 1.75
302 408 2.763448 CTCTCCTCCCTGTTTCGAGAAT 59.237 50.000 0.00 0.00 0.00 2.40
303 409 2.171840 CTCTCCTCCCTGTTTCGAGAA 58.828 52.381 0.00 0.00 0.00 2.87
304 410 1.354705 TCTCTCCTCCCTGTTTCGAGA 59.645 52.381 0.00 0.00 0.00 4.04
305 411 1.840737 TCTCTCCTCCCTGTTTCGAG 58.159 55.000 0.00 0.00 0.00 4.04
306 412 2.304221 TTCTCTCCTCCCTGTTTCGA 57.696 50.000 0.00 0.00 0.00 3.71
307 413 3.618690 AATTCTCTCCTCCCTGTTTCG 57.381 47.619 0.00 0.00 0.00 3.46
308 414 6.319911 CCAAATAATTCTCTCCTCCCTGTTTC 59.680 42.308 0.00 0.00 0.00 2.78
309 415 6.011628 TCCAAATAATTCTCTCCTCCCTGTTT 60.012 38.462 0.00 0.00 0.00 2.83
310 416 5.492524 TCCAAATAATTCTCTCCTCCCTGTT 59.507 40.000 0.00 0.00 0.00 3.16
311 417 5.039645 TCCAAATAATTCTCTCCTCCCTGT 58.960 41.667 0.00 0.00 0.00 4.00
312 418 5.636903 TCCAAATAATTCTCTCCTCCCTG 57.363 43.478 0.00 0.00 0.00 4.45
313 419 5.398467 GCTTCCAAATAATTCTCTCCTCCCT 60.398 44.000 0.00 0.00 0.00 4.20
314 420 4.824537 GCTTCCAAATAATTCTCTCCTCCC 59.175 45.833 0.00 0.00 0.00 4.30
315 421 5.689835 AGCTTCCAAATAATTCTCTCCTCC 58.310 41.667 0.00 0.00 0.00 4.30
316 422 7.637631 AAAGCTTCCAAATAATTCTCTCCTC 57.362 36.000 0.00 0.00 0.00 3.71
317 423 7.452813 ACAAAAGCTTCCAAATAATTCTCTCCT 59.547 33.333 0.00 0.00 0.00 3.69
318 424 7.606349 ACAAAAGCTTCCAAATAATTCTCTCC 58.394 34.615 0.00 0.00 0.00 3.71
323 429 9.791838 CGTTTTACAAAAGCTTCCAAATAATTC 57.208 29.630 0.00 0.00 0.00 2.17
324 430 9.535878 TCGTTTTACAAAAGCTTCCAAATAATT 57.464 25.926 0.00 0.00 0.00 1.40
325 431 9.191995 CTCGTTTTACAAAAGCTTCCAAATAAT 57.808 29.630 0.00 0.00 0.00 1.28
360 466 4.104831 ACCATAATCCTAGACCTATGGGC 58.895 47.826 19.67 0.00 43.42 5.36
364 470 8.980832 ATCTCAAACCATAATCCTAGACCTAT 57.019 34.615 0.00 0.00 0.00 2.57
374 480 6.347725 GGTGCACGATATCTCAAACCATAATC 60.348 42.308 11.45 0.00 0.00 1.75
380 486 2.906354 AGGTGCACGATATCTCAAACC 58.094 47.619 11.45 4.08 0.00 3.27
391 497 2.760634 ACAATCACATAGGTGCACGA 57.239 45.000 11.45 0.98 44.87 4.35
392 498 5.333339 GCTATTACAATCACATAGGTGCACG 60.333 44.000 11.45 0.00 44.87 5.34
448 951 8.683550 TTCACATAAGATACGTTGTAGACAAG 57.316 34.615 0.00 0.00 36.39 3.16
453 956 5.331607 GCGCTTCACATAAGATACGTTGTAG 60.332 44.000 0.00 0.00 0.00 2.74
457 960 3.306166 GTGCGCTTCACATAAGATACGTT 59.694 43.478 9.73 0.00 44.98 3.99
463 966 2.078226 GCGTGCGCTTCACATAAGA 58.922 52.632 9.73 0.00 45.92 2.10
504 1007 9.004717 TCTCAAAAATATTGTCACACGGATAAA 57.995 29.630 0.00 0.00 29.93 1.40
525 1028 8.367911 AGAGAACACAATTACAGTACATCTCAA 58.632 33.333 0.00 0.00 33.71 3.02
527 1030 7.489757 GGAGAGAACACAATTACAGTACATCTC 59.510 40.741 0.00 0.00 0.00 2.75
528 1031 7.324178 GGAGAGAACACAATTACAGTACATCT 58.676 38.462 0.00 0.00 0.00 2.90
529 1032 6.535508 GGGAGAGAACACAATTACAGTACATC 59.464 42.308 0.00 0.00 0.00 3.06
530 1033 6.213600 AGGGAGAGAACACAATTACAGTACAT 59.786 38.462 0.00 0.00 0.00 2.29
531 1034 5.542635 AGGGAGAGAACACAATTACAGTACA 59.457 40.000 0.00 0.00 0.00 2.90
533 1036 6.681729 AAGGGAGAGAACACAATTACAGTA 57.318 37.500 0.00 0.00 0.00 2.74
534 1037 5.568620 AAGGGAGAGAACACAATTACAGT 57.431 39.130 0.00 0.00 0.00 3.55
535 1038 7.979444 TTAAAGGGAGAGAACACAATTACAG 57.021 36.000 0.00 0.00 0.00 2.74
545 1048 3.999046 TCGGTGTTTAAAGGGAGAGAAC 58.001 45.455 0.00 0.00 0.00 3.01
553 1056 6.142817 GCTTATGCATATCGGTGTTTAAAGG 58.857 40.000 7.36 0.00 39.41 3.11
570 1073 2.511600 AGCGTCGGGTGCTTATGC 60.512 61.111 0.00 0.00 40.48 3.14
571 1074 3.398920 CAGCGTCGGGTGCTTATG 58.601 61.111 0.00 0.00 41.72 1.90
582 1085 1.097547 ATAAGGCCATGTGCAGCGTC 61.098 55.000 5.01 0.00 43.89 5.19
585 1088 0.666913 CTCATAAGGCCATGTGCAGC 59.333 55.000 5.01 0.00 43.89 5.25
587 1090 0.106569 CCCTCATAAGGCCATGTGCA 60.107 55.000 5.01 0.00 43.89 4.57
619 1123 3.857157 AACAAACTCACCTCCTGCTAA 57.143 42.857 0.00 0.00 0.00 3.09
643 1148 1.185618 ACACTTGACCGGCTGCTAGA 61.186 55.000 0.00 0.00 0.00 2.43
644 1149 1.016130 CACACTTGACCGGCTGCTAG 61.016 60.000 0.00 0.00 0.00 3.42
648 1170 2.253758 CCACACACTTGACCGGCTG 61.254 63.158 0.00 0.00 0.00 4.85
651 1173 1.891919 CACCCACACACTTGACCGG 60.892 63.158 0.00 0.00 0.00 5.28
696 1784 0.322816 CCAGTCCCAGGAACACCATG 60.323 60.000 0.00 0.00 0.00 3.66
697 1785 1.500783 CCCAGTCCCAGGAACACCAT 61.501 60.000 0.00 0.00 0.00 3.55
698 1786 2.153401 CCCAGTCCCAGGAACACCA 61.153 63.158 0.00 0.00 0.00 4.17
699 1787 1.842381 CTCCCAGTCCCAGGAACACC 61.842 65.000 0.00 0.00 0.00 4.16
732 3435 3.817084 CTCAACATTCTTCCAACAGAGCA 59.183 43.478 0.00 0.00 0.00 4.26
783 3486 1.597027 CCCGTGTGTCAACCTCCAC 60.597 63.158 0.00 0.00 0.00 4.02
784 3487 2.813726 CCCCGTGTGTCAACCTCCA 61.814 63.158 0.00 0.00 0.00 3.86
859 3562 2.036346 ACAAAACTCTTGCCTGCAATCC 59.964 45.455 4.84 0.00 35.20 3.01
961 3669 4.106909 GTTTAACTTTCGGGTTGTGTTGG 58.893 43.478 0.00 0.00 0.00 3.77
966 3674 2.359848 GCTGGTTTAACTTTCGGGTTGT 59.640 45.455 0.00 0.00 0.00 3.32
967 3675 2.287970 GGCTGGTTTAACTTTCGGGTTG 60.288 50.000 0.00 0.00 0.00 3.77
968 3676 1.958579 GGCTGGTTTAACTTTCGGGTT 59.041 47.619 0.00 0.00 0.00 4.11
969 3677 1.144298 AGGCTGGTTTAACTTTCGGGT 59.856 47.619 0.00 0.00 0.00 5.28
1029 3741 1.642952 CTCCTGCTTTCTTGGCGAGC 61.643 60.000 0.00 0.00 36.95 5.03
1085 3801 3.771110 GATCTCCCCCTGCTGCTGC 62.771 68.421 8.89 8.89 40.20 5.25
1086 3802 2.509916 GATCTCCCCCTGCTGCTG 59.490 66.667 0.00 0.00 0.00 4.41
1088 3804 4.925861 GCGATCTCCCCCTGCTGC 62.926 72.222 0.00 0.00 0.00 5.25
1089 3805 4.247380 GGCGATCTCCCCCTGCTG 62.247 72.222 0.00 0.00 0.00 4.41
1092 3808 3.917760 GACGGCGATCTCCCCCTG 61.918 72.222 16.62 0.00 0.00 4.45
1095 3811 4.267503 GACGACGGCGATCTCCCC 62.268 72.222 22.49 0.00 41.64 4.81
1096 3812 4.609247 CGACGACGGCGATCTCCC 62.609 72.222 22.49 0.00 41.64 4.30
1481 4203 2.503382 GGAGGATGACGAGGAGGCC 61.503 68.421 0.00 0.00 0.00 5.19
1691 4413 3.997064 CTCCTCCTCTGCCGTTGCG 62.997 68.421 0.00 0.00 41.78 4.85
1928 4656 1.817941 GCCGCGGAACACCATGTAT 60.818 57.895 33.48 0.00 0.00 2.29
2188 4916 3.691342 CGGACCGGACTGGAGCAA 61.691 66.667 9.46 0.00 42.00 3.91
2243 4971 0.718343 GGCGATCGATCTAGCAATGC 59.282 55.000 21.57 15.62 0.00 3.56
2251 4979 1.593750 GCTGCTTGGCGATCGATCT 60.594 57.895 21.57 0.00 0.00 2.75
2273 5001 4.121669 TCGTGAGAGCCTGCGAGC 62.122 66.667 0.00 0.00 34.84 5.03
2425 5163 1.032794 TGGCGCCAATGTTGTTGTAA 58.967 45.000 30.74 0.00 0.00 2.41
2426 5164 1.252175 ATGGCGCCAATGTTGTTGTA 58.748 45.000 36.33 4.88 0.00 2.41
2428 5166 2.582728 ATATGGCGCCAATGTTGTTG 57.417 45.000 36.33 0.00 0.00 3.33
2431 5169 5.565592 ACATATATATGGCGCCAATGTTG 57.434 39.130 36.33 25.78 38.00 3.33
2432 5170 5.588648 GGTACATATATATGGCGCCAATGTT 59.411 40.000 35.77 23.66 38.00 2.71
2468 5209 0.537188 AGGACGCGGATTGTGAATCT 59.463 50.000 12.47 0.00 38.01 2.40
2517 5261 2.185004 AGCAAGTGTGGAGCGTAATT 57.815 45.000 0.00 0.00 0.00 1.40
2527 5271 3.118738 CCTACCCTAACCTAGCAAGTGTG 60.119 52.174 0.00 0.00 0.00 3.82
2528 5272 3.105283 CCTACCCTAACCTAGCAAGTGT 58.895 50.000 0.00 0.00 0.00 3.55
2529 5273 2.434702 CCCTACCCTAACCTAGCAAGTG 59.565 54.545 0.00 0.00 0.00 3.16
2530 5274 2.045465 ACCCTACCCTAACCTAGCAAGT 59.955 50.000 0.00 0.00 0.00 3.16
2533 5277 2.044769 TCAACCCTACCCTAACCTAGCA 59.955 50.000 0.00 0.00 0.00 3.49
2534 5278 2.755686 TCAACCCTACCCTAACCTAGC 58.244 52.381 0.00 0.00 0.00 3.42
2535 5279 4.553678 TGATCAACCCTACCCTAACCTAG 58.446 47.826 0.00 0.00 0.00 3.02
2536 5280 4.630382 TGATCAACCCTACCCTAACCTA 57.370 45.455 0.00 0.00 0.00 3.08
2538 5282 3.072622 GGATGATCAACCCTACCCTAACC 59.927 52.174 10.88 0.00 0.00 2.85
2539 5283 3.974642 AGGATGATCAACCCTACCCTAAC 59.025 47.826 17.78 0.00 0.00 2.34
2635 5394 1.245732 GCATGGATCCTCTTGATGCC 58.754 55.000 18.79 5.57 40.86 4.40
2691 5453 5.644644 GAGCCCTAACTTGATGTCATTTTG 58.355 41.667 0.00 0.00 0.00 2.44
2696 5458 1.207089 CCGAGCCCTAACTTGATGTCA 59.793 52.381 0.00 0.00 0.00 3.58
2697 5459 1.207329 ACCGAGCCCTAACTTGATGTC 59.793 52.381 0.00 0.00 0.00 3.06
2698 5460 1.066143 CACCGAGCCCTAACTTGATGT 60.066 52.381 0.00 0.00 0.00 3.06
2699 5461 1.207089 TCACCGAGCCCTAACTTGATG 59.793 52.381 0.00 0.00 0.00 3.07
2701 5463 0.606604 GTCACCGAGCCCTAACTTGA 59.393 55.000 0.00 0.00 0.00 3.02
2702 5464 0.391263 GGTCACCGAGCCCTAACTTG 60.391 60.000 0.00 0.00 0.00 3.16
2703 5465 0.544595 AGGTCACCGAGCCCTAACTT 60.545 55.000 0.00 0.00 0.00 2.66
2704 5466 1.078710 AGGTCACCGAGCCCTAACT 59.921 57.895 0.00 0.00 0.00 2.24
2705 5467 1.218316 CAGGTCACCGAGCCCTAAC 59.782 63.158 0.00 0.00 0.00 2.34
2706 5468 0.834687 AACAGGTCACCGAGCCCTAA 60.835 55.000 0.00 0.00 0.00 2.69
2708 5470 2.526873 AACAGGTCACCGAGCCCT 60.527 61.111 0.00 0.00 0.00 5.19
2709 5471 2.358737 CAACAGGTCACCGAGCCC 60.359 66.667 0.00 0.00 0.00 5.19
2783 5830 0.251916 CTGTGGATAACGAAGGGCCA 59.748 55.000 6.18 0.00 0.00 5.36
2865 5919 5.163195 GGAGGGAGCATTAAGGAATTACTCA 60.163 44.000 0.00 0.00 31.42 3.41
2872 5926 1.485066 GACGGAGGGAGCATTAAGGAA 59.515 52.381 0.00 0.00 0.00 3.36
2879 5933 3.976490 TTCCGGACGGAGGGAGCAT 62.976 63.158 13.64 0.00 46.06 3.79
2884 5938 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2885 5939 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2886 5940 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2887 5941 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2888 5942 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2889 5943 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2890 5944 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2891 5945 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2892 5946 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2893 5947 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2900 5954 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2901 5955 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2902 5956 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2903 5957 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2904 5958 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2905 5959 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2908 5962 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2914 5968 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
2922 5976 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
2938 5992 9.670442 AGGGGATGTATCTAGAACTAAAATACA 57.330 33.333 0.00 13.81 37.26 2.29
2942 5996 9.681062 CAAAAGGGGATGTATCTAGAACTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
2943 5997 8.832735 ACAAAAGGGGATGTATCTAGAACTAAA 58.167 33.333 0.00 0.00 0.00 1.85
2944 5998 8.388656 ACAAAAGGGGATGTATCTAGAACTAA 57.611 34.615 0.00 0.00 0.00 2.24
2945 5999 7.070821 GGACAAAAGGGGATGTATCTAGAACTA 59.929 40.741 0.00 0.00 0.00 2.24
2946 6000 6.126739 GGACAAAAGGGGATGTATCTAGAACT 60.127 42.308 0.00 0.00 0.00 3.01
2947 6001 6.056236 GGACAAAAGGGGATGTATCTAGAAC 58.944 44.000 0.00 0.00 0.00 3.01
2948 6002 5.729229 TGGACAAAAGGGGATGTATCTAGAA 59.271 40.000 0.00 0.00 0.00 2.10
2949 6003 5.285401 TGGACAAAAGGGGATGTATCTAGA 58.715 41.667 0.00 0.00 0.00 2.43
2950 6004 5.630415 TGGACAAAAGGGGATGTATCTAG 57.370 43.478 0.00 0.00 0.00 2.43
2951 6005 6.590656 AATGGACAAAAGGGGATGTATCTA 57.409 37.500 0.00 0.00 0.00 1.98
2952 6006 5.472301 AATGGACAAAAGGGGATGTATCT 57.528 39.130 0.00 0.00 0.00 1.98
2953 6007 6.154363 TCAAAATGGACAAAAGGGGATGTATC 59.846 38.462 0.00 0.00 0.00 2.24
2954 6008 6.022315 TCAAAATGGACAAAAGGGGATGTAT 58.978 36.000 0.00 0.00 0.00 2.29
2955 6009 5.398236 TCAAAATGGACAAAAGGGGATGTA 58.602 37.500 0.00 0.00 0.00 2.29
2956 6010 4.230455 TCAAAATGGACAAAAGGGGATGT 58.770 39.130 0.00 0.00 0.00 3.06
2957 6011 4.888326 TCAAAATGGACAAAAGGGGATG 57.112 40.909 0.00 0.00 0.00 3.51
2958 6012 5.046376 GTCATCAAAATGGACAAAAGGGGAT 60.046 40.000 0.00 0.00 33.42 3.85
2959 6013 4.283212 GTCATCAAAATGGACAAAAGGGGA 59.717 41.667 0.00 0.00 33.42 4.81
2960 6014 4.040217 TGTCATCAAAATGGACAAAAGGGG 59.960 41.667 0.00 0.00 33.42 4.79
2961 6015 5.212532 TGTCATCAAAATGGACAAAAGGG 57.787 39.130 0.00 0.00 33.42 3.95
2962 6016 6.282930 ACTTGTCATCAAAATGGACAAAAGG 58.717 36.000 7.70 0.41 34.98 3.11
2963 6017 9.480053 AATACTTGTCATCAAAATGGACAAAAG 57.520 29.630 7.70 0.73 34.98 2.27
2964 6018 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
2965 6019 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
2966 6020 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
2967 6021 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
2968 6022 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
2969 6023 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2970 6024 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2971 6025 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2972 6026 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2973 6027 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2974 6028 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2975 6029 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2976 6030 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2977 6031 3.242316 GCCGTCCGAAAATACTTGTCATC 60.242 47.826 0.00 0.00 0.00 2.92
2978 6032 2.676342 GCCGTCCGAAAATACTTGTCAT 59.324 45.455 0.00 0.00 0.00 3.06
2979 6033 2.070783 GCCGTCCGAAAATACTTGTCA 58.929 47.619 0.00 0.00 0.00 3.58
2980 6034 1.060122 CGCCGTCCGAAAATACTTGTC 59.940 52.381 0.00 0.00 40.02 3.18
2981 6035 1.073177 CGCCGTCCGAAAATACTTGT 58.927 50.000 0.00 0.00 40.02 3.16
2982 6036 0.372334 CCGCCGTCCGAAAATACTTG 59.628 55.000 0.00 0.00 40.02 3.16
2983 6037 0.741927 CCCGCCGTCCGAAAATACTT 60.742 55.000 0.00 0.00 40.02 2.24
2984 6038 1.153509 CCCGCCGTCCGAAAATACT 60.154 57.895 0.00 0.00 40.02 2.12
2985 6039 1.149964 CTCCCGCCGTCCGAAAATAC 61.150 60.000 0.00 0.00 40.02 1.89
2986 6040 1.142314 CTCCCGCCGTCCGAAAATA 59.858 57.895 0.00 0.00 40.02 1.40
2987 6041 1.606885 TACTCCCGCCGTCCGAAAAT 61.607 55.000 0.00 0.00 40.02 1.82
2988 6042 2.274645 TACTCCCGCCGTCCGAAAA 61.275 57.895 0.00 0.00 40.02 2.29
2989 6043 2.676121 TACTCCCGCCGTCCGAAA 60.676 61.111 0.00 0.00 40.02 3.46
2990 6044 3.443045 GTACTCCCGCCGTCCGAA 61.443 66.667 0.00 0.00 40.02 4.30
2991 6045 2.535485 TAAGTACTCCCGCCGTCCGA 62.535 60.000 0.00 0.00 40.02 4.55
2992 6046 1.656818 TTAAGTACTCCCGCCGTCCG 61.657 60.000 0.00 0.00 0.00 4.79
2993 6047 0.749049 ATTAAGTACTCCCGCCGTCC 59.251 55.000 0.00 0.00 0.00 4.79
2994 6048 3.551659 CCTTATTAAGTACTCCCGCCGTC 60.552 52.174 0.00 0.00 0.00 4.79
2995 6049 2.363359 CCTTATTAAGTACTCCCGCCGT 59.637 50.000 0.00 0.00 0.00 5.68
2996 6050 2.865276 GCCTTATTAAGTACTCCCGCCG 60.865 54.545 0.00 0.00 0.00 6.46
2997 6051 2.103601 TGCCTTATTAAGTACTCCCGCC 59.896 50.000 0.00 0.00 0.00 6.13
2998 6052 3.464111 TGCCTTATTAAGTACTCCCGC 57.536 47.619 0.00 0.00 0.00 6.13
2999 6053 6.092955 TGTATGCCTTATTAAGTACTCCCG 57.907 41.667 0.00 0.00 0.00 5.14
3000 6054 8.154856 TGATTGTATGCCTTATTAAGTACTCCC 58.845 37.037 0.00 0.00 0.00 4.30
3001 6055 8.989980 GTGATTGTATGCCTTATTAAGTACTCC 58.010 37.037 0.00 0.00 0.00 3.85
3002 6056 8.700644 CGTGATTGTATGCCTTATTAAGTACTC 58.299 37.037 0.00 0.00 0.00 2.59
3003 6057 8.418662 TCGTGATTGTATGCCTTATTAAGTACT 58.581 33.333 2.88 0.00 0.00 2.73
3004 6058 8.583810 TCGTGATTGTATGCCTTATTAAGTAC 57.416 34.615 2.88 0.49 0.00 2.73
3013 6067 4.574828 GGTTGTATCGTGATTGTATGCCTT 59.425 41.667 0.00 0.00 0.00 4.35
3037 6091 1.584175 TGGTTCGCTTTTCTAACGCA 58.416 45.000 0.00 0.00 0.00 5.24
3041 6095 4.261405 CCACATGTTGGTTCGCTTTTCTAA 60.261 41.667 0.00 0.00 41.10 2.10
3057 6111 3.330701 ACTCTAACCATCCAACCACATGT 59.669 43.478 0.00 0.00 0.00 3.21
3058 6112 3.691118 CACTCTAACCATCCAACCACATG 59.309 47.826 0.00 0.00 0.00 3.21
3059 6113 3.587061 TCACTCTAACCATCCAACCACAT 59.413 43.478 0.00 0.00 0.00 3.21
3060 6114 2.976185 TCACTCTAACCATCCAACCACA 59.024 45.455 0.00 0.00 0.00 4.17
3061 6115 3.008049 AGTCACTCTAACCATCCAACCAC 59.992 47.826 0.00 0.00 0.00 4.16
3063 6117 3.008049 ACAGTCACTCTAACCATCCAACC 59.992 47.826 0.00 0.00 0.00 3.77
3064 6118 3.997021 CACAGTCACTCTAACCATCCAAC 59.003 47.826 0.00 0.00 0.00 3.77
3065 6119 3.901222 TCACAGTCACTCTAACCATCCAA 59.099 43.478 0.00 0.00 0.00 3.53
3066 6120 3.506398 TCACAGTCACTCTAACCATCCA 58.494 45.455 0.00 0.00 0.00 3.41
3067 6121 4.744795 ATCACAGTCACTCTAACCATCC 57.255 45.455 0.00 0.00 0.00 3.51
3068 6122 6.451393 GGATATCACAGTCACTCTAACCATC 58.549 44.000 4.83 0.00 0.00 3.51
3070 6124 4.649674 GGGATATCACAGTCACTCTAACCA 59.350 45.833 4.83 0.00 0.00 3.67
3071 6125 4.039366 GGGGATATCACAGTCACTCTAACC 59.961 50.000 7.40 0.00 0.00 2.85
3072 6126 4.649674 TGGGGATATCACAGTCACTCTAAC 59.350 45.833 7.40 0.00 0.00 2.34
3073 6127 4.878968 TGGGGATATCACAGTCACTCTAA 58.121 43.478 7.40 0.00 0.00 2.10
3074 6128 4.079154 ACTGGGGATATCACAGTCACTCTA 60.079 45.833 20.41 0.00 41.27 2.43
3076 6130 3.034635 ACTGGGGATATCACAGTCACTC 58.965 50.000 20.41 0.00 41.27 3.51
3077 6131 3.121929 ACTGGGGATATCACAGTCACT 57.878 47.619 20.41 4.75 41.27 3.41
3083 6137 3.206639 TCTGGTAGACTGGGGATATCACA 59.793 47.826 7.40 3.31 0.00 3.58
3084 6138 3.829601 CTCTGGTAGACTGGGGATATCAC 59.170 52.174 4.83 0.00 0.00 3.06
3085 6139 3.727391 TCTCTGGTAGACTGGGGATATCA 59.273 47.826 4.83 0.00 0.00 2.15
3086 6140 4.390129 TCTCTGGTAGACTGGGGATATC 57.610 50.000 0.00 0.00 0.00 1.63
3087 6141 4.420552 TCTTCTCTGGTAGACTGGGGATAT 59.579 45.833 0.00 0.00 32.51 1.63
3088 6142 3.792114 TCTTCTCTGGTAGACTGGGGATA 59.208 47.826 0.00 0.00 32.51 2.59
3089 6143 2.587777 TCTTCTCTGGTAGACTGGGGAT 59.412 50.000 0.00 0.00 32.51 3.85
3091 6145 2.104170 GTCTTCTCTGGTAGACTGGGG 58.896 57.143 0.00 0.00 37.06 4.96
3092 6146 2.808919 TGTCTTCTCTGGTAGACTGGG 58.191 52.381 0.00 0.00 39.54 4.45
3093 6147 3.383185 GGATGTCTTCTCTGGTAGACTGG 59.617 52.174 0.00 0.00 39.54 4.00
3095 6149 3.628769 GGGGATGTCTTCTCTGGTAGACT 60.629 52.174 0.00 0.00 39.54 3.24
3096 6150 2.696187 GGGGATGTCTTCTCTGGTAGAC 59.304 54.545 0.00 0.00 39.36 2.59
3097 6151 2.687014 CGGGGATGTCTTCTCTGGTAGA 60.687 54.545 0.00 0.00 0.00 2.59
3098 6152 1.683917 CGGGGATGTCTTCTCTGGTAG 59.316 57.143 0.00 0.00 0.00 3.18
3100 6154 0.252284 ACGGGGATGTCTTCTCTGGT 60.252 55.000 0.00 0.00 35.26 4.00
3102 6156 1.550524 TCAACGGGGATGTCTTCTCTG 59.449 52.381 0.00 0.00 37.22 3.35
3104 6158 1.736032 CGTCAACGGGGATGTCTTCTC 60.736 57.143 0.00 0.00 35.37 2.87
3105 6159 0.246635 CGTCAACGGGGATGTCTTCT 59.753 55.000 0.00 0.00 35.37 2.85
3106 6160 0.245539 TCGTCAACGGGGATGTCTTC 59.754 55.000 2.31 0.00 40.29 2.87
3108 6162 1.590147 GTCGTCAACGGGGATGTCT 59.410 57.895 2.31 0.00 40.29 3.41
3109 6163 4.180496 GTCGTCAACGGGGATGTC 57.820 61.111 2.31 0.00 40.29 3.06
3134 7260 1.840141 GCTCATTTATGCGCGAAACAC 59.160 47.619 12.10 0.00 0.00 3.32
3137 7263 0.027455 CGGCTCATTTATGCGCGAAA 59.973 50.000 12.10 6.31 39.29 3.46
3143 7269 2.749076 TCATATGGCGGCTCATTTATGC 59.251 45.455 11.43 0.00 0.00 3.14
3158 7284 7.933577 TCAGAGCTTTAGGGTGTAATTCATATG 59.066 37.037 0.00 0.00 0.00 1.78
3163 7289 7.448748 TTTTCAGAGCTTTAGGGTGTAATTC 57.551 36.000 0.00 0.00 0.00 2.17
3165 7291 6.127619 GCATTTTCAGAGCTTTAGGGTGTAAT 60.128 38.462 0.00 0.00 0.00 1.89
3166 7292 5.183140 GCATTTTCAGAGCTTTAGGGTGTAA 59.817 40.000 0.00 0.00 0.00 2.41
3167 7293 4.700213 GCATTTTCAGAGCTTTAGGGTGTA 59.300 41.667 0.00 0.00 0.00 2.90
3168 7294 3.507622 GCATTTTCAGAGCTTTAGGGTGT 59.492 43.478 0.00 0.00 0.00 4.16
3170 7296 3.092301 GGCATTTTCAGAGCTTTAGGGT 58.908 45.455 0.00 0.00 0.00 4.34
3171 7297 2.428530 GGGCATTTTCAGAGCTTTAGGG 59.571 50.000 0.00 0.00 0.00 3.53
3188 7412 4.012374 GAGATCAAAGAATCAAGTGGGCA 58.988 43.478 0.00 0.00 0.00 5.36
3196 7420 5.871524 CGTTCTTCAGGAGATCAAAGAATCA 59.128 40.000 0.00 0.00 39.26 2.57
3198 7422 5.872070 GTCGTTCTTCAGGAGATCAAAGAAT 59.128 40.000 0.00 0.00 39.26 2.40
3221 7445 0.671781 GGTCGTGCTGAGATTGCTGT 60.672 55.000 0.00 0.00 0.00 4.40
3253 7477 0.179081 GTATCTCGCCTTGGTGGGAC 60.179 60.000 4.77 0.00 36.00 4.46
3255 7479 1.227263 CGTATCTCGCCTTGGTGGG 60.227 63.158 0.00 0.00 36.00 4.61
3300 7524 3.691342 CGAGAGCACCGGGTTGGA 61.691 66.667 6.32 0.00 42.00 3.53
3341 7565 1.672356 CGGCAACTTGGGAGGACTG 60.672 63.158 0.00 0.00 0.00 3.51
3342 7566 2.750350 CGGCAACTTGGGAGGACT 59.250 61.111 0.00 0.00 0.00 3.85
3364 7588 1.076024 AGGACCATTGGTGAGCATGTT 59.924 47.619 14.44 0.00 35.25 2.71
3393 7617 2.094126 CTAAAGCAGGGAATCGCGCG 62.094 60.000 26.76 26.76 34.07 6.86
3395 7619 0.931005 GTCTAAAGCAGGGAATCGCG 59.069 55.000 0.00 0.00 0.00 5.87
3396 7620 1.300481 GGTCTAAAGCAGGGAATCGC 58.700 55.000 0.00 0.00 0.00 4.58
3405 7629 1.203994 GTAGCCGAGTGGTCTAAAGCA 59.796 52.381 0.00 0.00 37.67 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.