Multiple sequence alignment - TraesCS1B01G225800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G225800 chr1B 100.000 3146 0 0 1 3146 405674739 405671594 0.000000e+00 5810.0
1 TraesCS1B01G225800 chr1B 87.342 79 10 0 1106 1184 405525953 405525875 1.200000e-14 91.6
2 TraesCS1B01G225800 chr1A 91.301 2345 120 34 388 2696 374960399 374958103 0.000000e+00 3123.0
3 TraesCS1B01G225800 chr1A 85.255 373 33 9 2684 3034 374951372 374951000 6.410000e-97 364.0
4 TraesCS1B01G225800 chr1A 88.608 79 9 0 1106 1184 374690536 374690458 2.580000e-16 97.1
5 TraesCS1B01G225800 chr1D 93.570 2084 89 24 285 2332 300668281 300666207 0.000000e+00 3064.0
6 TraesCS1B01G225800 chr1D 87.532 385 28 8 2575 2944 300664440 300664061 8.060000e-116 427.0
7 TraesCS1B01G225800 chr1D 89.804 255 18 2 2337 2583 300666234 300665980 1.410000e-83 320.0
8 TraesCS1B01G225800 chr1D 83.260 227 27 5 1 217 300668513 300668288 6.880000e-47 198.0
9 TraesCS1B01G225800 chr1D 88.608 79 9 0 1106 1184 300326696 300326618 2.580000e-16 97.1
10 TraesCS1B01G225800 chr6A 81.208 894 87 34 580 1402 16337156 16338039 0.000000e+00 645.0
11 TraesCS1B01G225800 chr6A 79.899 592 72 31 765 1323 16290028 16289451 1.060000e-104 390.0
12 TraesCS1B01G225800 chr6D 80.903 864 87 41 580 1403 15552066 15551241 7.460000e-171 610.0
13 TraesCS1B01G225800 chr6D 83.784 296 23 11 580 859 15599819 15599533 1.120000e-64 257.0
14 TraesCS1B01G225800 chr6D 88.500 200 17 1 996 1189 15589699 15589500 1.460000e-58 237.0
15 TraesCS1B01G225800 chrUn 87.692 520 59 1 1635 2149 319197541 319197022 4.490000e-168 601.0
16 TraesCS1B01G225800 chrUn 87.216 352 45 0 1798 2149 348953558 348953909 4.890000e-108 401.0
17 TraesCS1B01G225800 chrUn 87.216 352 45 0 1798 2149 459176789 459177140 4.890000e-108 401.0
18 TraesCS1B01G225800 chrUn 82.009 428 39 21 745 1153 76417679 76417271 2.340000e-86 329.0
19 TraesCS1B01G225800 chrUn 82.009 428 39 21 745 1153 311042676 311042268 2.340000e-86 329.0
20 TraesCS1B01G225800 chrUn 82.353 391 52 14 1021 1403 319198036 319197655 1.090000e-84 324.0
21 TraesCS1B01G225800 chrUn 82.353 391 52 14 1021 1403 347746837 347746456 1.090000e-84 324.0
22 TraesCS1B01G225800 chrUn 81.545 233 23 10 660 876 319199736 319199508 1.160000e-39 174.0
23 TraesCS1B01G225800 chrUn 81.545 233 23 10 660 876 347748537 347748309 1.160000e-39 174.0
24 TraesCS1B01G225800 chrUn 86.250 160 20 1 1246 1403 76409062 76409221 4.170000e-39 172.0
25 TraesCS1B01G225800 chrUn 93.902 82 4 1 2857 2937 24159623 24159704 4.260000e-24 122.0
26 TraesCS1B01G225800 chr2B 90.435 115 5 3 3037 3146 32055984 32056097 2.530000e-31 147.0
27 TraesCS1B01G225800 chr6B 85.106 141 18 2 1265 1402 27668936 27669076 1.180000e-29 141.0
28 TraesCS1B01G225800 chr4D 89.474 76 7 1 2862 2936 494098903 494098828 9.290000e-16 95.3
29 TraesCS1B01G225800 chr3B 88.000 75 8 1 2857 2930 15700456 15700530 1.550000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G225800 chr1B 405671594 405674739 3145 True 5810.000000 5810 100.000000 1 3146 1 chr1B.!!$R2 3145
1 TraesCS1B01G225800 chr1A 374958103 374960399 2296 True 3123.000000 3123 91.301000 388 2696 1 chr1A.!!$R3 2308
2 TraesCS1B01G225800 chr1D 300664061 300668513 4452 True 1002.250000 3064 88.541500 1 2944 4 chr1D.!!$R2 2943
3 TraesCS1B01G225800 chr6A 16337156 16338039 883 False 645.000000 645 81.208000 580 1402 1 chr6A.!!$F1 822
4 TraesCS1B01G225800 chr6A 16289451 16290028 577 True 390.000000 390 79.899000 765 1323 1 chr6A.!!$R1 558
5 TraesCS1B01G225800 chr6D 15551241 15552066 825 True 610.000000 610 80.903000 580 1403 1 chr6D.!!$R1 823
6 TraesCS1B01G225800 chrUn 319197022 319199736 2714 True 366.333333 601 83.863333 660 2149 3 chrUn.!!$R3 1489
7 TraesCS1B01G225800 chrUn 347746456 347748537 2081 True 249.000000 324 81.949000 660 1403 2 chrUn.!!$R4 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 412 0.174162 TAAACCGAGCGGCCTAAGTC 59.826 55.0 9.14 0.0 39.32 3.01 F
1109 2585 0.040246 GCCGTCGCTAGATCCTACAC 60.040 60.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 3343 0.325933 CCCTCCTGAACTGCATGTCA 59.674 55.0 0.0 0.0 0.0 3.58 R
2961 6098 0.032130 TCACTCACGCTCAACAGGTC 59.968 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.303948 CATGTGGCATGACCTGGGA 59.696 57.895 0.00 0.00 40.22 4.37
33 34 0.750546 CATGTGGCATGACCTGGGAG 60.751 60.000 0.00 0.00 40.22 4.30
34 35 2.439156 GTGGCATGACCTGGGAGC 60.439 66.667 0.00 0.00 40.22 4.70
36 37 2.124403 GGCATGACCTGGGAGCTG 60.124 66.667 0.00 0.00 34.51 4.24
37 38 2.827642 GCATGACCTGGGAGCTGC 60.828 66.667 0.00 0.00 0.00 5.25
38 39 2.996395 CATGACCTGGGAGCTGCT 59.004 61.111 0.00 0.00 0.00 4.24
39 40 1.302285 CATGACCTGGGAGCTGCTT 59.698 57.895 2.53 0.00 0.00 3.91
40 41 0.543277 CATGACCTGGGAGCTGCTTA 59.457 55.000 2.53 0.00 0.00 3.09
41 42 0.835941 ATGACCTGGGAGCTGCTTAG 59.164 55.000 2.53 4.14 0.00 2.18
55 56 1.284785 TGCTTAGGCCCAAATAGCACT 59.715 47.619 0.00 0.00 36.96 4.40
70 71 0.746659 GCACTGCCCAGTTTCTTTGT 59.253 50.000 0.00 0.00 40.20 2.83
73 74 3.550842 GCACTGCCCAGTTTCTTTGTAAG 60.551 47.826 0.00 0.00 40.20 2.34
85 87 3.146066 TCTTTGTAAGCCGAGTGCATTT 58.854 40.909 0.00 0.00 44.83 2.32
91 93 5.833082 TGTAAGCCGAGTGCATTTTAAAAA 58.167 33.333 4.44 0.00 44.83 1.94
92 94 6.451393 TGTAAGCCGAGTGCATTTTAAAAAT 58.549 32.000 4.44 0.00 44.83 1.82
98 100 6.251376 GCCGAGTGCATTTTAAAAATACTCTG 59.749 38.462 24.44 21.55 40.77 3.35
104 115 9.797473 GTGCATTTTAAAAATACTCTGCTTTTC 57.203 29.630 17.94 7.09 0.00 2.29
120 131 8.997621 TCTGCTTTTCTGTATTAAACGTAGAT 57.002 30.769 0.00 0.00 27.41 1.98
126 137 8.511465 TTTCTGTATTAAACGTAGATATCGGC 57.489 34.615 0.00 0.00 0.00 5.54
136 147 6.754702 ACGTAGATATCGGCTTACATGTAT 57.245 37.500 6.36 0.00 0.00 2.29
137 148 6.552629 ACGTAGATATCGGCTTACATGTATG 58.447 40.000 6.36 10.32 0.00 2.39
138 149 6.150641 ACGTAGATATCGGCTTACATGTATGT 59.849 38.462 17.33 2.75 44.48 2.29
140 151 5.641709 AGATATCGGCTTACATGTATGTCG 58.358 41.667 29.60 29.60 41.97 4.35
158 169 5.369685 TGTCGTGAACATGCAACATAAAT 57.630 34.783 0.00 0.00 31.20 1.40
161 172 5.855925 GTCGTGAACATGCAACATAAATTCA 59.144 36.000 0.00 0.00 0.00 2.57
162 173 6.362016 GTCGTGAACATGCAACATAAATTCAA 59.638 34.615 0.00 0.00 0.00 2.69
168 179 7.795431 ACATGCAACATAAATTCAACTTACG 57.205 32.000 0.00 0.00 0.00 3.18
213 224 5.961396 TCGTTCCGGGATGAAAAATTAAA 57.039 34.783 0.73 0.00 0.00 1.52
217 228 4.333690 TCCGGGATGAAAAATTAAACCGA 58.666 39.130 0.00 0.00 42.42 4.69
218 229 4.396790 TCCGGGATGAAAAATTAAACCGAG 59.603 41.667 0.00 0.00 42.42 4.63
220 231 5.092781 CGGGATGAAAAATTAAACCGAGTG 58.907 41.667 0.00 0.00 42.42 3.51
221 232 5.407502 GGGATGAAAAATTAAACCGAGTGG 58.592 41.667 0.00 0.00 42.84 4.00
238 249 2.307496 TGGTACACTCGGTTTAGGGA 57.693 50.000 0.00 0.00 0.00 4.20
239 250 2.173519 TGGTACACTCGGTTTAGGGAG 58.826 52.381 0.00 0.00 36.36 4.30
240 251 1.479730 GGTACACTCGGTTTAGGGAGG 59.520 57.143 0.00 0.00 34.58 4.30
241 252 2.174360 GTACACTCGGTTTAGGGAGGT 58.826 52.381 0.00 0.00 34.58 3.85
242 253 0.974383 ACACTCGGTTTAGGGAGGTG 59.026 55.000 0.00 0.00 34.58 4.00
243 254 0.391263 CACTCGGTTTAGGGAGGTGC 60.391 60.000 0.00 0.00 34.58 5.01
244 255 1.221021 CTCGGTTTAGGGAGGTGCC 59.779 63.158 0.00 0.00 0.00 5.01
245 256 1.536907 TCGGTTTAGGGAGGTGCCA 60.537 57.895 0.00 0.00 38.95 4.92
246 257 0.912487 TCGGTTTAGGGAGGTGCCAT 60.912 55.000 0.00 0.00 38.95 4.40
247 258 0.748005 CGGTTTAGGGAGGTGCCATG 60.748 60.000 0.00 0.00 38.95 3.66
248 259 0.331616 GGTTTAGGGAGGTGCCATGT 59.668 55.000 0.00 0.00 38.95 3.21
249 260 1.463674 GTTTAGGGAGGTGCCATGTG 58.536 55.000 0.00 0.00 38.95 3.21
250 261 0.331278 TTTAGGGAGGTGCCATGTGG 59.669 55.000 0.00 0.00 38.95 4.17
268 279 3.452755 TGGCACTACCATCGATGTTAG 57.547 47.619 23.80 23.80 46.36 2.34
269 280 2.764010 TGGCACTACCATCGATGTTAGT 59.236 45.455 24.99 24.99 46.36 2.24
270 281 3.181479 TGGCACTACCATCGATGTTAGTC 60.181 47.826 27.07 21.15 46.36 2.59
271 282 3.043586 GCACTACCATCGATGTTAGTCG 58.956 50.000 27.07 22.39 34.35 4.18
272 283 3.488721 GCACTACCATCGATGTTAGTCGT 60.489 47.826 27.07 17.37 42.07 4.34
273 284 4.280461 CACTACCATCGATGTTAGTCGTC 58.720 47.826 27.07 0.00 42.07 4.20
274 285 2.865343 ACCATCGATGTTAGTCGTCC 57.135 50.000 23.27 0.00 42.07 4.79
275 286 1.065102 ACCATCGATGTTAGTCGTCCG 59.935 52.381 23.27 7.00 42.07 4.79
276 287 1.065102 CCATCGATGTTAGTCGTCCGT 59.935 52.381 23.27 0.00 42.07 4.69
277 288 2.373269 CATCGATGTTAGTCGTCCGTC 58.627 52.381 17.50 0.00 42.07 4.79
278 289 1.441738 TCGATGTTAGTCGTCCGTCA 58.558 50.000 0.00 0.00 42.07 4.35
279 290 2.011947 TCGATGTTAGTCGTCCGTCAT 58.988 47.619 0.00 0.00 42.07 3.06
280 291 3.197265 TCGATGTTAGTCGTCCGTCATA 58.803 45.455 0.00 0.00 42.07 2.15
281 292 3.811497 TCGATGTTAGTCGTCCGTCATAT 59.189 43.478 0.00 0.00 42.07 1.78
282 293 4.084171 TCGATGTTAGTCGTCCGTCATATC 60.084 45.833 0.00 0.00 42.07 1.63
283 294 4.319261 CGATGTTAGTCGTCCGTCATATCA 60.319 45.833 0.00 0.00 36.88 2.15
341 353 0.537188 AGGTAAGTCGAGTGCCCATG 59.463 55.000 10.23 0.00 0.00 3.66
342 354 0.535335 GGTAAGTCGAGTGCCCATGA 59.465 55.000 0.00 0.00 0.00 3.07
345 357 3.181469 GGTAAGTCGAGTGCCCATGAATA 60.181 47.826 0.00 0.00 0.00 1.75
352 364 3.244353 CGAGTGCCCATGAATAGGATCTT 60.244 47.826 0.00 0.00 0.00 2.40
359 371 5.048434 GCCCATGAATAGGATCTTTGCTTAC 60.048 44.000 0.00 0.00 0.00 2.34
375 387 7.705325 TCTTTGCTTACATCTTATAAGTCGGTC 59.295 37.037 12.19 0.17 33.04 4.79
393 405 2.991866 GGTCTAATATAAACCGAGCGGC 59.008 50.000 9.14 0.00 39.32 6.53
394 406 2.991866 GTCTAATATAAACCGAGCGGCC 59.008 50.000 9.14 0.00 39.32 6.13
400 412 0.174162 TAAACCGAGCGGCCTAAGTC 59.826 55.000 9.14 0.00 39.32 3.01
570 585 5.084722 CGAACCGTATATCCTTCGTATCAC 58.915 45.833 0.00 0.00 32.65 3.06
641 661 5.766670 TCTGACTTTCTCTGCAATCAACAAT 59.233 36.000 0.00 0.00 0.00 2.71
736 764 2.047560 GCGTAAACCGGTGCCTCT 60.048 61.111 8.52 0.00 36.94 3.69
742 772 0.322546 AAACCGGTGCCTCTCCATTC 60.323 55.000 8.52 0.00 0.00 2.67
743 773 2.190578 CCGGTGCCTCTCCATTCC 59.809 66.667 0.00 0.00 0.00 3.01
879 915 2.754012 TGGCTTGCCTATAAATGCCT 57.246 45.000 13.18 0.00 40.82 4.75
912 965 0.679002 CCCTCCAGCCATCACAACAG 60.679 60.000 0.00 0.00 0.00 3.16
983 1042 8.750298 CCTACAAGTCTAAGAAGGTTCATAGAA 58.250 37.037 6.31 0.00 38.67 2.10
1048 2524 1.483595 CCTTGTGGCACTCCTCTCCA 61.484 60.000 19.83 0.00 0.00 3.86
1109 2585 0.040246 GCCGTCGCTAGATCCTACAC 60.040 60.000 0.00 0.00 0.00 2.90
1217 2710 4.260743 CGATGACGGCACATATTTTCATGT 60.261 41.667 0.00 0.00 36.39 3.21
1387 2920 0.174845 GGCATGTGCTACGAGGTACA 59.825 55.000 4.84 0.00 41.70 2.90
1388 2921 1.278238 GCATGTGCTACGAGGTACAC 58.722 55.000 0.00 0.00 34.93 2.90
1590 3142 1.518325 CATGGCCAAGTACGTTGACA 58.482 50.000 10.96 0.00 38.60 3.58
1647 3199 2.299297 CGAGTACTCCAACAACCCTTCT 59.701 50.000 17.23 0.00 0.00 2.85
1653 3205 1.214175 TCCAACAACCCTTCTTGCTCA 59.786 47.619 0.00 0.00 0.00 4.26
1692 3244 3.380320 TCGTCATCACCGACATGAACTAT 59.620 43.478 0.00 0.00 35.54 2.12
1941 3498 1.068281 CGTATGGAGCTCATGCAGACT 59.932 52.381 17.19 0.00 39.13 3.24
2076 3633 0.175073 ATACCGGAAAGACGCTGGTC 59.825 55.000 9.46 0.00 43.76 4.02
2108 3665 2.283143 ATCCCGGCTTATTGGCAGCA 62.283 55.000 0.00 0.00 39.21 4.41
2178 3735 1.264557 CGTACTTCTCCGATCGATGCT 59.735 52.381 18.66 0.00 0.00 3.79
2180 3737 0.387202 ACTTCTCCGATCGATGCTGG 59.613 55.000 18.66 1.64 0.00 4.85
2281 3848 3.311596 ACTTTCAAGCGTGTTAACTGTCC 59.688 43.478 7.22 0.00 0.00 4.02
2300 3867 2.567169 TCCTCGATTGTGTGTCCTGAAT 59.433 45.455 0.00 0.00 0.00 2.57
2316 3883 3.118482 CCTGAATATGTGTGGCTGTCTCT 60.118 47.826 0.00 0.00 0.00 3.10
2317 3884 4.118410 CTGAATATGTGTGGCTGTCTCTC 58.882 47.826 0.00 0.00 0.00 3.20
2318 3885 3.771479 TGAATATGTGTGGCTGTCTCTCT 59.229 43.478 0.00 0.00 0.00 3.10
2319 3886 4.142071 TGAATATGTGTGGCTGTCTCTCTC 60.142 45.833 0.00 0.00 0.00 3.20
2320 3887 1.935799 ATGTGTGGCTGTCTCTCTCT 58.064 50.000 0.00 0.00 0.00 3.10
2321 3888 1.252175 TGTGTGGCTGTCTCTCTCTC 58.748 55.000 0.00 0.00 0.00 3.20
2322 3889 1.202989 TGTGTGGCTGTCTCTCTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
2323 3890 1.202114 GTGTGGCTGTCTCTCTCTCTG 59.798 57.143 0.00 0.00 0.00 3.35
2324 3891 1.202989 TGTGGCTGTCTCTCTCTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
2325 3892 1.202114 GTGGCTGTCTCTCTCTCTGTG 59.798 57.143 0.00 0.00 0.00 3.66
2326 3893 1.202989 TGGCTGTCTCTCTCTCTGTGT 60.203 52.381 0.00 0.00 0.00 3.72
2327 3894 1.202114 GGCTGTCTCTCTCTCTGTGTG 59.798 57.143 0.00 0.00 0.00 3.82
2328 3895 1.885887 GCTGTCTCTCTCTCTGTGTGT 59.114 52.381 0.00 0.00 0.00 3.72
2329 3896 2.351641 GCTGTCTCTCTCTCTGTGTGTG 60.352 54.545 0.00 0.00 0.00 3.82
2330 3897 2.884012 CTGTCTCTCTCTCTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
2331 3898 2.620585 TGTCTCTCTCTCTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
2332 3899 2.621055 GTCTCTCTCTCTGTGTGTGTGT 59.379 50.000 0.00 0.00 0.00 3.72
2333 3900 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
2334 3901 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
2335 3902 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
2336 3903 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
2337 3904 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
2338 3905 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
2339 3906 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
2340 3907 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2341 3908 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2342 3909 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2343 3910 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2344 3911 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2345 3912 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2346 3913 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2347 3914 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2348 3915 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2349 3916 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2438 4005 1.209261 TCGCAGTTCCATGCCTGATAA 59.791 47.619 8.84 0.00 43.49 1.75
2453 4020 6.422333 TGCCTGATAAAGTGTGATCCAATTA 58.578 36.000 0.00 0.00 29.72 1.40
2491 4058 5.596836 TCAAATGGATGAAGTTTATGGCC 57.403 39.130 0.00 0.00 0.00 5.36
2492 4059 4.097741 TCAAATGGATGAAGTTTATGGCCG 59.902 41.667 0.00 0.00 0.00 6.13
2493 4060 2.799126 TGGATGAAGTTTATGGCCGT 57.201 45.000 1.35 1.35 0.00 5.68
2494 4061 2.364632 TGGATGAAGTTTATGGCCGTG 58.635 47.619 8.05 0.00 0.00 4.94
2495 4062 1.065551 GGATGAAGTTTATGGCCGTGC 59.934 52.381 8.05 0.00 0.00 5.34
2513 4088 3.553105 CGTGCGGACATATATCATCATGG 59.447 47.826 8.11 0.00 0.00 3.66
2514 4089 3.310774 GTGCGGACATATATCATCATGGC 59.689 47.826 0.63 0.00 0.00 4.40
2535 4110 4.865365 GGCCATTAGCTTATCATCGAGTAC 59.135 45.833 0.00 0.00 43.05 2.73
2541 4116 2.663602 GCTTATCATCGAGTACATGCCG 59.336 50.000 0.00 0.00 0.00 5.69
2559 4134 1.869690 GCGGTTCCTGCACTTTCTC 59.130 57.895 0.00 0.00 0.00 2.87
2589 5712 5.065988 ACGAACCATACCAAAATGTAGATGC 59.934 40.000 0.00 0.00 0.00 3.91
2594 5717 7.850193 ACCATACCAAAATGTAGATGCAAATT 58.150 30.769 0.00 0.00 0.00 1.82
2640 5763 7.865820 TCCTTAGAGATGAAGATGGACATTTT 58.134 34.615 0.00 0.00 0.00 1.82
2681 5804 4.037565 TCGAGATGTACATTTGCCGTCTAT 59.962 41.667 10.30 0.00 0.00 1.98
2716 5839 8.213518 TCTTGCTTTGACAAACATATATCTCC 57.786 34.615 0.00 0.00 0.00 3.71
2717 5840 6.942532 TGCTTTGACAAACATATATCTCCC 57.057 37.500 0.00 0.00 0.00 4.30
2718 5841 6.662755 TGCTTTGACAAACATATATCTCCCT 58.337 36.000 0.00 0.00 0.00 4.20
2719 5842 6.543465 TGCTTTGACAAACATATATCTCCCTG 59.457 38.462 0.00 0.00 0.00 4.45
2720 5843 6.016777 GCTTTGACAAACATATATCTCCCTGG 60.017 42.308 0.00 0.00 0.00 4.45
2721 5844 6.823286 TTGACAAACATATATCTCCCTGGA 57.177 37.500 0.00 0.00 0.00 3.86
2722 5845 7.392766 TTGACAAACATATATCTCCCTGGAT 57.607 36.000 0.00 0.00 0.00 3.41
2723 5846 7.392766 TGACAAACATATATCTCCCTGGATT 57.607 36.000 0.00 0.00 0.00 3.01
2724 5847 7.453393 TGACAAACATATATCTCCCTGGATTC 58.547 38.462 0.00 0.00 0.00 2.52
2728 5858 6.537453 ACATATATCTCCCTGGATTCGAAG 57.463 41.667 3.35 0.00 0.00 3.79
2738 5868 3.125829 CCTGGATTCGAAGTGTGTGATTG 59.874 47.826 3.35 0.00 0.00 2.67
2739 5869 3.073678 TGGATTCGAAGTGTGTGATTGG 58.926 45.455 3.35 0.00 0.00 3.16
2778 5909 3.394606 ACCATAGCCCACAGGTAATTAGG 59.605 47.826 0.00 0.00 34.57 2.69
2781 5912 2.127708 AGCCCACAGGTAATTAGGAGG 58.872 52.381 0.00 0.00 34.57 4.30
2782 5913 1.143073 GCCCACAGGTAATTAGGAGGG 59.857 57.143 8.84 8.84 38.10 4.30
2785 5916 2.438392 CCACAGGTAATTAGGAGGGGAC 59.562 54.545 0.00 0.00 0.00 4.46
2802 5934 0.038159 GACCACAGGTCGAGGTTGAG 60.038 60.000 0.00 0.00 43.14 3.02
2813 5950 4.322499 GGTCGAGGTTGAGTTAATTCTGGA 60.322 45.833 0.00 0.00 0.00 3.86
2821 5958 6.538742 GGTTGAGTTAATTCTGGAATCATCGA 59.461 38.462 0.00 0.00 0.00 3.59
2831 5968 3.264947 TGGAATCATCGAAAGCAGTCAG 58.735 45.455 0.00 0.00 0.00 3.51
2846 5983 3.491447 GCAGTCAGTTTGTCCAAAGCAAT 60.491 43.478 0.00 0.00 0.00 3.56
2851 5988 6.265196 AGTCAGTTTGTCCAAAGCAATCATTA 59.735 34.615 0.00 0.00 0.00 1.90
2855 5992 4.389890 TGTCCAAAGCAATCATTATGGC 57.610 40.909 0.00 0.00 31.46 4.40
2856 5993 3.768215 TGTCCAAAGCAATCATTATGGCA 59.232 39.130 0.00 0.00 34.09 4.92
2858 5995 4.807304 GTCCAAAGCAATCATTATGGCAAG 59.193 41.667 0.00 0.00 34.09 4.01
2872 6009 0.875059 GGCAAGACCAAGTGTAGCAC 59.125 55.000 0.00 0.00 38.86 4.40
2944 6081 2.944349 GAGTAGTACCGAAGTGCTAGCT 59.056 50.000 17.23 0.00 41.21 3.32
2945 6082 2.944349 AGTAGTACCGAAGTGCTAGCTC 59.056 50.000 17.23 12.88 41.21 4.09
2946 6083 1.104630 AGTACCGAAGTGCTAGCTCC 58.895 55.000 17.23 6.57 37.15 4.70
2947 6084 0.815734 GTACCGAAGTGCTAGCTCCA 59.184 55.000 17.23 0.00 0.00 3.86
2948 6085 1.103803 TACCGAAGTGCTAGCTCCAG 58.896 55.000 17.23 6.53 0.00 3.86
2949 6086 1.520342 CCGAAGTGCTAGCTCCAGC 60.520 63.158 17.23 1.26 42.15 4.85
2959 6096 2.999355 GCTAGCTCCAGCAACTATATGC 59.001 50.000 7.70 0.00 46.78 3.14
2969 6106 4.542662 GCAACTATATGCAGACCTGTTG 57.457 45.455 14.55 14.55 45.70 3.33
2970 6107 4.191544 GCAACTATATGCAGACCTGTTGA 58.808 43.478 19.94 0.00 45.70 3.18
2971 6108 4.272018 GCAACTATATGCAGACCTGTTGAG 59.728 45.833 19.94 3.05 45.70 3.02
2972 6109 4.065321 ACTATATGCAGACCTGTTGAGC 57.935 45.455 0.00 0.00 0.00 4.26
2973 6110 1.945387 ATATGCAGACCTGTTGAGCG 58.055 50.000 0.00 0.00 0.00 5.03
2974 6111 0.608130 TATGCAGACCTGTTGAGCGT 59.392 50.000 0.00 0.00 0.00 5.07
2975 6112 0.952497 ATGCAGACCTGTTGAGCGTG 60.952 55.000 0.00 0.00 0.00 5.34
2976 6113 1.300931 GCAGACCTGTTGAGCGTGA 60.301 57.895 0.00 0.00 0.00 4.35
2977 6114 1.287730 GCAGACCTGTTGAGCGTGAG 61.288 60.000 0.00 0.00 0.00 3.51
2978 6115 0.032678 CAGACCTGTTGAGCGTGAGT 59.967 55.000 0.00 0.00 0.00 3.41
2979 6116 0.032678 AGACCTGTTGAGCGTGAGTG 59.967 55.000 0.00 0.00 0.00 3.51
2980 6117 0.032130 GACCTGTTGAGCGTGAGTGA 59.968 55.000 0.00 0.00 0.00 3.41
2981 6118 0.464036 ACCTGTTGAGCGTGAGTGAA 59.536 50.000 0.00 0.00 0.00 3.18
2982 6119 1.134521 ACCTGTTGAGCGTGAGTGAAA 60.135 47.619 0.00 0.00 0.00 2.69
2983 6120 2.146342 CCTGTTGAGCGTGAGTGAAAT 58.854 47.619 0.00 0.00 0.00 2.17
2984 6121 2.158449 CCTGTTGAGCGTGAGTGAAATC 59.842 50.000 0.00 0.00 0.00 2.17
2985 6122 3.062763 CTGTTGAGCGTGAGTGAAATCT 58.937 45.455 0.00 0.00 0.00 2.40
2986 6123 4.237724 CTGTTGAGCGTGAGTGAAATCTA 58.762 43.478 0.00 0.00 0.00 1.98
2987 6124 4.627058 TGTTGAGCGTGAGTGAAATCTAA 58.373 39.130 0.00 0.00 0.00 2.10
2988 6125 4.686091 TGTTGAGCGTGAGTGAAATCTAAG 59.314 41.667 0.00 0.00 0.00 2.18
2989 6126 3.849911 TGAGCGTGAGTGAAATCTAAGG 58.150 45.455 0.00 0.00 0.00 2.69
2990 6127 3.509967 TGAGCGTGAGTGAAATCTAAGGA 59.490 43.478 0.00 0.00 0.00 3.36
2991 6128 4.109050 GAGCGTGAGTGAAATCTAAGGAG 58.891 47.826 0.00 0.00 0.00 3.69
2992 6129 3.118956 AGCGTGAGTGAAATCTAAGGAGG 60.119 47.826 0.00 0.00 0.00 4.30
2993 6130 3.786635 CGTGAGTGAAATCTAAGGAGGG 58.213 50.000 0.00 0.00 0.00 4.30
2994 6131 3.536570 GTGAGTGAAATCTAAGGAGGGC 58.463 50.000 0.00 0.00 0.00 5.19
2995 6132 2.505819 TGAGTGAAATCTAAGGAGGGCC 59.494 50.000 0.00 0.00 0.00 5.80
2996 6133 2.505819 GAGTGAAATCTAAGGAGGGCCA 59.494 50.000 6.18 0.00 36.29 5.36
2997 6134 2.919602 AGTGAAATCTAAGGAGGGCCAA 59.080 45.455 6.18 0.00 36.29 4.52
2998 6135 3.333680 AGTGAAATCTAAGGAGGGCCAAA 59.666 43.478 6.18 0.00 36.29 3.28
2999 6136 4.086457 GTGAAATCTAAGGAGGGCCAAAA 58.914 43.478 6.18 0.00 36.29 2.44
3000 6137 4.082190 GTGAAATCTAAGGAGGGCCAAAAC 60.082 45.833 6.18 0.00 36.29 2.43
3001 6138 3.825908 AATCTAAGGAGGGCCAAAACA 57.174 42.857 6.18 0.00 36.29 2.83
3002 6139 3.825908 ATCTAAGGAGGGCCAAAACAA 57.174 42.857 6.18 0.00 36.29 2.83
3003 6140 2.871453 TCTAAGGAGGGCCAAAACAAC 58.129 47.619 6.18 0.00 36.29 3.32
3004 6141 2.445525 TCTAAGGAGGGCCAAAACAACT 59.554 45.455 6.18 0.00 36.29 3.16
3005 6142 3.653836 TCTAAGGAGGGCCAAAACAACTA 59.346 43.478 6.18 0.00 36.29 2.24
3006 6143 2.586648 AGGAGGGCCAAAACAACTAG 57.413 50.000 6.18 0.00 36.29 2.57
3007 6144 2.062636 AGGAGGGCCAAAACAACTAGA 58.937 47.619 6.18 0.00 36.29 2.43
3008 6145 2.040412 AGGAGGGCCAAAACAACTAGAG 59.960 50.000 6.18 0.00 36.29 2.43
3009 6146 2.039879 GGAGGGCCAAAACAACTAGAGA 59.960 50.000 6.18 0.00 0.00 3.10
3010 6147 3.308473 GGAGGGCCAAAACAACTAGAGAT 60.308 47.826 6.18 0.00 0.00 2.75
3011 6148 4.336280 GAGGGCCAAAACAACTAGAGATT 58.664 43.478 6.18 0.00 0.00 2.40
3012 6149 5.497474 GAGGGCCAAAACAACTAGAGATTA 58.503 41.667 6.18 0.00 0.00 1.75
3013 6150 5.501156 AGGGCCAAAACAACTAGAGATTAG 58.499 41.667 6.18 0.00 0.00 1.73
3014 6151 5.250774 AGGGCCAAAACAACTAGAGATTAGA 59.749 40.000 6.18 0.00 0.00 2.10
3015 6152 5.586643 GGGCCAAAACAACTAGAGATTAGAG 59.413 44.000 4.39 0.00 0.00 2.43
3016 6153 6.407202 GGCCAAAACAACTAGAGATTAGAGA 58.593 40.000 0.00 0.00 0.00 3.10
3017 6154 6.536941 GGCCAAAACAACTAGAGATTAGAGAG 59.463 42.308 0.00 0.00 0.00 3.20
3018 6155 6.536941 GCCAAAACAACTAGAGATTAGAGAGG 59.463 42.308 0.00 0.00 0.00 3.69
3019 6156 6.536941 CCAAAACAACTAGAGATTAGAGAGGC 59.463 42.308 0.00 0.00 0.00 4.70
3020 6157 5.862678 AACAACTAGAGATTAGAGAGGCC 57.137 43.478 0.00 0.00 0.00 5.19
3021 6158 3.886505 ACAACTAGAGATTAGAGAGGCCG 59.113 47.826 0.00 0.00 0.00 6.13
3022 6159 3.149005 ACTAGAGATTAGAGAGGCCGG 57.851 52.381 0.00 0.00 0.00 6.13
3023 6160 2.224917 ACTAGAGATTAGAGAGGCCGGG 60.225 54.545 2.18 0.00 0.00 5.73
3024 6161 0.178947 AGAGATTAGAGAGGCCGGGG 60.179 60.000 2.18 0.00 0.00 5.73
3025 6162 0.178958 GAGATTAGAGAGGCCGGGGA 60.179 60.000 2.18 0.00 0.00 4.81
3026 6163 0.489567 AGATTAGAGAGGCCGGGGAT 59.510 55.000 2.18 0.00 0.00 3.85
3027 6164 1.132689 AGATTAGAGAGGCCGGGGATT 60.133 52.381 2.18 0.00 0.00 3.01
3028 6165 2.111972 AGATTAGAGAGGCCGGGGATTA 59.888 50.000 2.18 0.00 0.00 1.75
3029 6166 2.011122 TTAGAGAGGCCGGGGATTAG 57.989 55.000 2.18 0.00 0.00 1.73
3030 6167 0.542232 TAGAGAGGCCGGGGATTAGC 60.542 60.000 2.18 0.00 0.00 3.09
3031 6168 2.040884 AGAGGCCGGGGATTAGCA 60.041 61.111 2.18 0.00 0.00 3.49
3032 6169 2.105806 GAGAGGCCGGGGATTAGCAG 62.106 65.000 2.18 0.00 0.00 4.24
3033 6170 3.171388 AGGCCGGGGATTAGCAGG 61.171 66.667 2.18 0.00 0.00 4.85
3034 6171 4.271016 GGCCGGGGATTAGCAGGG 62.271 72.222 2.18 0.00 0.00 4.45
3035 6172 3.489513 GCCGGGGATTAGCAGGGT 61.490 66.667 2.18 0.00 0.00 4.34
3036 6173 3.056754 GCCGGGGATTAGCAGGGTT 62.057 63.158 2.18 0.00 0.00 4.11
3037 6174 1.613061 CCGGGGATTAGCAGGGTTT 59.387 57.895 0.00 0.00 0.00 3.27
3038 6175 0.033503 CCGGGGATTAGCAGGGTTTT 60.034 55.000 0.00 0.00 0.00 2.43
3039 6176 1.618616 CCGGGGATTAGCAGGGTTTTT 60.619 52.381 0.00 0.00 0.00 1.94
3061 6198 5.722021 TTTTGAGGGGTAAAGCAAGATTC 57.278 39.130 0.00 0.00 0.00 2.52
3062 6199 4.380843 TTGAGGGGTAAAGCAAGATTCA 57.619 40.909 0.00 0.00 0.00 2.57
3063 6200 4.591321 TGAGGGGTAAAGCAAGATTCAT 57.409 40.909 0.00 0.00 0.00 2.57
3064 6201 4.526970 TGAGGGGTAAAGCAAGATTCATC 58.473 43.478 0.00 0.00 0.00 2.92
3065 6202 3.545703 AGGGGTAAAGCAAGATTCATCG 58.454 45.455 0.00 0.00 0.00 3.84
3066 6203 3.199946 AGGGGTAAAGCAAGATTCATCGA 59.800 43.478 0.00 0.00 0.00 3.59
3067 6204 3.945285 GGGGTAAAGCAAGATTCATCGAA 59.055 43.478 0.00 0.00 0.00 3.71
3068 6205 4.035675 GGGGTAAAGCAAGATTCATCGAAG 59.964 45.833 0.00 0.00 0.00 3.79
3069 6206 4.636206 GGGTAAAGCAAGATTCATCGAAGT 59.364 41.667 0.00 0.00 0.00 3.01
3070 6207 5.220681 GGGTAAAGCAAGATTCATCGAAGTC 60.221 44.000 0.00 0.00 0.00 3.01
3071 6208 4.954092 AAAGCAAGATTCATCGAAGTCC 57.046 40.909 0.00 0.00 0.00 3.85
3072 6209 3.616956 AGCAAGATTCATCGAAGTCCA 57.383 42.857 0.00 0.00 0.00 4.02
3073 6210 3.265791 AGCAAGATTCATCGAAGTCCAC 58.734 45.455 0.00 0.00 0.00 4.02
3074 6211 3.002791 GCAAGATTCATCGAAGTCCACA 58.997 45.455 0.00 0.00 0.00 4.17
3075 6212 3.624861 GCAAGATTCATCGAAGTCCACAT 59.375 43.478 0.00 0.00 0.00 3.21
3076 6213 4.495349 GCAAGATTCATCGAAGTCCACATG 60.495 45.833 0.00 0.00 0.00 3.21
3077 6214 3.201290 AGATTCATCGAAGTCCACATGC 58.799 45.455 0.00 0.00 0.00 4.06
3078 6215 2.470983 TTCATCGAAGTCCACATGCA 57.529 45.000 0.00 0.00 0.00 3.96
3079 6216 2.014335 TCATCGAAGTCCACATGCAG 57.986 50.000 0.00 0.00 0.00 4.41
3080 6217 1.276138 TCATCGAAGTCCACATGCAGT 59.724 47.619 0.00 0.00 0.00 4.40
3089 6226 3.458872 CACATGCAGTGGGATACGT 57.541 52.632 8.03 0.00 44.69 3.57
3090 6227 1.290203 CACATGCAGTGGGATACGTC 58.710 55.000 0.00 0.00 44.69 4.34
3091 6228 1.134699 CACATGCAGTGGGATACGTCT 60.135 52.381 0.00 0.00 44.69 4.18
3092 6229 1.555075 ACATGCAGTGGGATACGTCTT 59.445 47.619 0.00 0.00 37.60 3.01
3093 6230 2.027192 ACATGCAGTGGGATACGTCTTT 60.027 45.455 0.00 0.00 37.60 2.52
3094 6231 2.093306 TGCAGTGGGATACGTCTTTG 57.907 50.000 0.00 0.00 37.60 2.77
3095 6232 1.338674 TGCAGTGGGATACGTCTTTGG 60.339 52.381 0.00 0.00 37.60 3.28
3096 6233 1.338769 GCAGTGGGATACGTCTTTGGT 60.339 52.381 0.00 0.00 37.60 3.67
3097 6234 2.618053 CAGTGGGATACGTCTTTGGTC 58.382 52.381 0.00 0.00 37.60 4.02
3098 6235 2.028476 CAGTGGGATACGTCTTTGGTCA 60.028 50.000 0.00 0.00 37.60 4.02
3099 6236 2.838202 AGTGGGATACGTCTTTGGTCAT 59.162 45.455 0.00 0.00 37.60 3.06
3100 6237 4.028131 AGTGGGATACGTCTTTGGTCATA 58.972 43.478 0.00 0.00 37.60 2.15
3101 6238 4.099573 AGTGGGATACGTCTTTGGTCATAG 59.900 45.833 0.00 0.00 37.60 2.23
3102 6239 3.386726 TGGGATACGTCTTTGGTCATAGG 59.613 47.826 0.00 0.00 37.60 2.57
3103 6240 3.244112 GGGATACGTCTTTGGTCATAGGG 60.244 52.174 0.00 0.00 37.60 3.53
3104 6241 2.973694 TACGTCTTTGGTCATAGGGC 57.026 50.000 0.00 0.00 0.00 5.19
3105 6242 1.276622 ACGTCTTTGGTCATAGGGCT 58.723 50.000 0.00 0.00 0.00 5.19
3106 6243 1.066143 ACGTCTTTGGTCATAGGGCTG 60.066 52.381 0.00 0.00 0.00 4.85
3107 6244 1.743772 CGTCTTTGGTCATAGGGCTGG 60.744 57.143 0.00 0.00 0.00 4.85
3108 6245 0.255890 TCTTTGGTCATAGGGCTGGC 59.744 55.000 0.00 0.00 0.00 4.85
3109 6246 0.753111 CTTTGGTCATAGGGCTGGCC 60.753 60.000 13.15 13.15 41.49 5.36
3111 6248 3.006677 GGTCATAGGGCTGGCCAA 58.993 61.111 23.25 1.74 40.77 4.52
3112 6249 1.306296 GGTCATAGGGCTGGCCAAA 59.694 57.895 23.25 10.40 40.77 3.28
3113 6250 1.037579 GGTCATAGGGCTGGCCAAAC 61.038 60.000 23.25 13.31 40.77 2.93
3114 6251 1.037579 GTCATAGGGCTGGCCAAACC 61.038 60.000 23.25 15.88 37.98 3.27
3127 6264 2.097680 CCAAACCAAACATGGCATCC 57.902 50.000 0.00 0.00 0.00 3.51
3128 6265 1.338960 CCAAACCAAACATGGCATCCC 60.339 52.381 0.00 0.00 0.00 3.85
3130 6267 1.269012 AACCAAACATGGCATCCCAG 58.731 50.000 0.00 0.00 46.24 4.45
3131 6268 0.409092 ACCAAACATGGCATCCCAGA 59.591 50.000 0.00 0.00 46.24 3.86
3132 6269 0.819582 CCAAACATGGCATCCCAGAC 59.180 55.000 0.00 0.00 46.24 3.51
3133 6270 0.819582 CAAACATGGCATCCCAGACC 59.180 55.000 0.00 0.00 46.24 3.85
3134 6271 0.706433 AAACATGGCATCCCAGACCT 59.294 50.000 0.00 0.00 46.24 3.85
3135 6272 0.257039 AACATGGCATCCCAGACCTC 59.743 55.000 0.00 0.00 46.24 3.85
3136 6273 0.622738 ACATGGCATCCCAGACCTCT 60.623 55.000 0.00 0.00 46.24 3.69
3137 6274 0.549950 CATGGCATCCCAGACCTCTT 59.450 55.000 0.00 0.00 46.24 2.85
3138 6275 0.549950 ATGGCATCCCAGACCTCTTG 59.450 55.000 0.00 0.00 46.24 3.02
3139 6276 0.547471 TGGCATCCCAGACCTCTTGA 60.547 55.000 0.00 0.00 35.79 3.02
3140 6277 0.107459 GGCATCCCAGACCTCTTGAC 60.107 60.000 0.00 0.00 0.00 3.18
3141 6278 0.615331 GCATCCCAGACCTCTTGACA 59.385 55.000 0.00 0.00 0.00 3.58
3142 6279 1.003580 GCATCCCAGACCTCTTGACAA 59.996 52.381 0.00 0.00 0.00 3.18
3143 6280 2.553028 GCATCCCAGACCTCTTGACAAA 60.553 50.000 0.00 0.00 0.00 2.83
3144 6281 3.341823 CATCCCAGACCTCTTGACAAAG 58.658 50.000 0.00 0.00 34.45 2.77
3145 6282 1.072331 TCCCAGACCTCTTGACAAAGC 59.928 52.381 0.00 0.00 33.06 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.080641 CTCCCAGGTCATGCCACA 58.919 61.111 8.58 0.00 40.61 4.17
23 24 1.267574 CCTAAGCAGCTCCCAGGTCA 61.268 60.000 0.00 0.00 0.00 4.02
32 33 1.752084 GCTATTTGGGCCTAAGCAGCT 60.752 52.381 21.97 0.00 42.56 4.24
33 34 0.670706 GCTATTTGGGCCTAAGCAGC 59.329 55.000 17.17 17.17 42.56 5.25
34 35 1.678101 GTGCTATTTGGGCCTAAGCAG 59.322 52.381 13.70 10.20 43.35 4.24
36 37 1.678101 CAGTGCTATTTGGGCCTAAGC 59.322 52.381 4.53 2.99 38.76 3.09
37 38 1.678101 GCAGTGCTATTTGGGCCTAAG 59.322 52.381 8.18 0.00 0.00 2.18
38 39 1.684869 GGCAGTGCTATTTGGGCCTAA 60.685 52.381 16.11 3.27 38.37 2.69
39 40 0.106719 GGCAGTGCTATTTGGGCCTA 60.107 55.000 16.11 0.00 38.37 3.93
40 41 1.380380 GGCAGTGCTATTTGGGCCT 60.380 57.895 16.11 0.00 38.37 5.19
41 42 2.426406 GGGCAGTGCTATTTGGGCC 61.426 63.158 16.11 0.00 40.63 5.80
55 56 1.960689 GGCTTACAAAGAAACTGGGCA 59.039 47.619 0.00 0.00 0.00 5.36
70 71 7.822658 AGTATTTTTAAAATGCACTCGGCTTA 58.177 30.769 17.88 0.00 45.15 3.09
73 74 6.251376 CAGAGTATTTTTAAAATGCACTCGGC 59.749 38.462 19.26 5.60 45.13 5.54
91 93 8.773404 ACGTTTAATACAGAAAAGCAGAGTAT 57.227 30.769 0.00 0.00 0.00 2.12
92 94 9.350357 CTACGTTTAATACAGAAAAGCAGAGTA 57.650 33.333 0.00 0.00 0.00 2.59
98 100 9.990888 CGATATCTACGTTTAATACAGAAAAGC 57.009 33.333 0.00 0.00 0.00 3.51
104 115 9.059485 GTAAGCCGATATCTACGTTTAATACAG 57.941 37.037 0.00 0.00 0.00 2.74
113 124 6.150641 ACATACATGTAAGCCGATATCTACGT 59.849 38.462 10.14 0.00 39.68 3.57
120 131 4.276431 TCACGACATACATGTAAGCCGATA 59.724 41.667 20.89 7.54 41.95 2.92
125 136 5.718649 ATGTTCACGACATACATGTAAGC 57.281 39.130 10.14 1.52 47.00 3.09
136 147 4.820284 TTTATGTTGCATGTTCACGACA 57.180 36.364 0.00 0.00 43.71 4.35
137 148 5.855925 TGAATTTATGTTGCATGTTCACGAC 59.144 36.000 0.00 0.00 0.00 4.34
138 149 6.006759 TGAATTTATGTTGCATGTTCACGA 57.993 33.333 0.00 0.00 0.00 4.35
140 151 7.642071 AGTTGAATTTATGTTGCATGTTCAC 57.358 32.000 0.00 0.00 0.00 3.18
156 167 2.478894 CGTGTCTGGCGTAAGTTGAATT 59.521 45.455 0.00 0.00 41.68 2.17
158 169 1.202440 ACGTGTCTGGCGTAAGTTGAA 60.202 47.619 0.00 0.00 41.06 2.69
161 172 0.599204 CCACGTGTCTGGCGTAAGTT 60.599 55.000 15.65 0.00 40.90 2.66
162 173 1.006571 CCACGTGTCTGGCGTAAGT 60.007 57.895 15.65 0.00 40.90 2.24
218 229 1.895131 TCCCTAAACCGAGTGTACCAC 59.105 52.381 0.00 0.00 34.10 4.16
220 231 1.479730 CCTCCCTAAACCGAGTGTACC 59.520 57.143 0.00 0.00 0.00 3.34
221 232 2.094338 CACCTCCCTAAACCGAGTGTAC 60.094 54.545 0.00 0.00 0.00 2.90
222 233 2.173519 CACCTCCCTAAACCGAGTGTA 58.826 52.381 0.00 0.00 0.00 2.90
223 234 0.974383 CACCTCCCTAAACCGAGTGT 59.026 55.000 0.00 0.00 0.00 3.55
224 235 0.391263 GCACCTCCCTAAACCGAGTG 60.391 60.000 0.00 0.00 0.00 3.51
225 236 1.551019 GGCACCTCCCTAAACCGAGT 61.551 60.000 0.00 0.00 0.00 4.18
226 237 1.221021 GGCACCTCCCTAAACCGAG 59.779 63.158 0.00 0.00 0.00 4.63
227 238 0.912487 ATGGCACCTCCCTAAACCGA 60.912 55.000 0.00 0.00 0.00 4.69
228 239 0.748005 CATGGCACCTCCCTAAACCG 60.748 60.000 0.00 0.00 0.00 4.44
229 240 0.331616 ACATGGCACCTCCCTAAACC 59.668 55.000 0.00 0.00 0.00 3.27
230 241 1.463674 CACATGGCACCTCCCTAAAC 58.536 55.000 0.00 0.00 0.00 2.01
231 242 0.331278 CCACATGGCACCTCCCTAAA 59.669 55.000 0.00 0.00 0.00 1.85
232 243 1.998530 CCACATGGCACCTCCCTAA 59.001 57.895 0.00 0.00 0.00 2.69
233 244 3.739922 CCACATGGCACCTCCCTA 58.260 61.111 0.00 0.00 0.00 3.53
254 265 2.288729 CGGACGACTAACATCGATGGTA 59.711 50.000 28.09 24.79 45.13 3.25
255 266 1.065102 CGGACGACTAACATCGATGGT 59.935 52.381 28.09 25.03 45.13 3.55
256 267 1.065102 ACGGACGACTAACATCGATGG 59.935 52.381 28.09 13.74 45.13 3.51
257 268 2.223180 TGACGGACGACTAACATCGATG 60.223 50.000 23.68 23.68 45.13 3.84
258 269 2.011947 TGACGGACGACTAACATCGAT 58.988 47.619 1.63 0.00 45.13 3.59
259 270 1.441738 TGACGGACGACTAACATCGA 58.558 50.000 1.63 0.00 45.13 3.59
261 272 5.104562 TGATATGACGGACGACTAACATC 57.895 43.478 0.00 0.00 0.00 3.06
262 273 5.707242 ATGATATGACGGACGACTAACAT 57.293 39.130 0.00 0.00 0.00 2.71
263 274 5.509716 AATGATATGACGGACGACTAACA 57.490 39.130 0.00 0.00 0.00 2.41
264 275 7.594015 ACATAAATGATATGACGGACGACTAAC 59.406 37.037 0.00 0.00 0.00 2.34
265 276 7.654568 ACATAAATGATATGACGGACGACTAA 58.345 34.615 0.00 0.00 0.00 2.24
266 277 7.210718 ACATAAATGATATGACGGACGACTA 57.789 36.000 0.00 0.00 0.00 2.59
267 278 6.085555 ACATAAATGATATGACGGACGACT 57.914 37.500 0.00 0.00 0.00 4.18
268 279 6.581370 CAACATAAATGATATGACGGACGAC 58.419 40.000 0.00 0.00 0.00 4.34
269 280 5.176774 GCAACATAAATGATATGACGGACGA 59.823 40.000 0.00 0.00 0.00 4.20
270 281 5.374080 GCAACATAAATGATATGACGGACG 58.626 41.667 2.67 0.00 0.00 4.79
271 282 5.614668 CGGCAACATAAATGATATGACGGAC 60.615 44.000 12.34 0.00 37.31 4.79
272 283 4.450757 CGGCAACATAAATGATATGACGGA 59.549 41.667 12.34 0.00 37.31 4.69
273 284 4.450757 TCGGCAACATAAATGATATGACGG 59.549 41.667 16.92 5.66 39.46 4.79
274 285 5.405269 TCTCGGCAACATAAATGATATGACG 59.595 40.000 13.36 13.36 39.93 4.35
275 286 6.785488 TCTCGGCAACATAAATGATATGAC 57.215 37.500 2.67 0.00 0.00 3.06
276 287 6.204688 GGTTCTCGGCAACATAAATGATATGA 59.795 38.462 2.67 0.00 0.00 2.15
277 288 6.017192 TGGTTCTCGGCAACATAAATGATATG 60.017 38.462 0.00 0.00 0.00 1.78
278 289 6.017109 GTGGTTCTCGGCAACATAAATGATAT 60.017 38.462 0.00 0.00 0.00 1.63
279 290 5.295787 GTGGTTCTCGGCAACATAAATGATA 59.704 40.000 0.00 0.00 0.00 2.15
280 291 4.096382 GTGGTTCTCGGCAACATAAATGAT 59.904 41.667 0.00 0.00 0.00 2.45
281 292 3.438781 GTGGTTCTCGGCAACATAAATGA 59.561 43.478 0.00 0.00 0.00 2.57
282 293 3.440173 AGTGGTTCTCGGCAACATAAATG 59.560 43.478 0.00 0.00 0.00 2.32
283 294 3.440173 CAGTGGTTCTCGGCAACATAAAT 59.560 43.478 0.00 0.00 0.00 1.40
345 357 9.771534 GACTTATAAGATGTAAGCAAAGATCCT 57.228 33.333 19.38 0.00 33.47 3.24
352 364 7.108841 AGACCGACTTATAAGATGTAAGCAA 57.891 36.000 19.38 0.00 33.47 3.91
375 387 3.314541 AGGCCGCTCGGTTTATATTAG 57.685 47.619 10.24 0.00 37.65 1.73
384 396 3.823330 CGACTTAGGCCGCTCGGT 61.823 66.667 10.24 0.00 37.65 4.69
385 397 4.570663 CCGACTTAGGCCGCTCGG 62.571 72.222 15.90 15.90 39.78 4.63
393 405 0.034896 AGTGTTGCACCCGACTTAGG 59.965 55.000 0.00 0.00 34.49 2.69
394 406 1.429463 GAGTGTTGCACCCGACTTAG 58.571 55.000 0.00 0.00 34.49 2.18
400 412 1.434555 TAAATCGAGTGTTGCACCCG 58.565 50.000 0.00 0.00 36.95 5.28
416 429 8.458843 GCCAATTTCAACTCTGCTTACTATAAA 58.541 33.333 0.00 0.00 0.00 1.40
460 473 6.376299 AGGAAAATCAAATAAACCCGAGTACC 59.624 38.462 0.00 0.00 0.00 3.34
570 585 0.992072 CACGTTGTATCCTGCAGTCG 59.008 55.000 13.81 7.90 0.00 4.18
574 589 1.298340 CCCCACGTTGTATCCTGCA 59.702 57.895 0.00 0.00 0.00 4.41
641 661 1.550327 TGTGGGTGCACAAGTCAAAA 58.450 45.000 20.43 0.98 31.35 2.44
736 764 1.782752 GGAATCATGGAGGGGAATGGA 59.217 52.381 0.00 0.00 0.00 3.41
742 772 1.772819 CGGAGGGAATCATGGAGGGG 61.773 65.000 0.00 0.00 0.00 4.79
743 773 1.056700 ACGGAGGGAATCATGGAGGG 61.057 60.000 0.00 0.00 0.00 4.30
879 915 1.526887 GAGGGGATGACATTGCCGA 59.473 57.895 0.00 0.00 0.00 5.54
983 1042 3.845781 CCATATTGGCACTACAGGTCT 57.154 47.619 0.00 0.00 0.00 3.85
1048 2524 1.215647 GGACGGACGTGAAGAGCAT 59.784 57.895 0.53 0.00 0.00 3.79
1125 2601 2.531685 TACCAGGTGGCCTTGGCT 60.532 61.111 17.89 10.07 39.32 4.75
1217 2710 2.293677 ATGATTTAGTGCAGCGACGA 57.706 45.000 0.00 0.00 0.00 4.20
1255 2781 1.353103 CCTGCAAATCGATCGGTGC 59.647 57.895 23.62 23.62 37.51 5.01
1532 3072 2.676608 CACATGGCAGCAGGGGTA 59.323 61.111 0.00 0.00 0.00 3.69
1647 3199 4.399395 CTCGGCTGGCCTGAGCAA 62.399 66.667 16.32 3.73 41.08 3.91
1653 3205 4.488911 ATCCTCCTCGGCTGGCCT 62.489 66.667 3.32 0.00 0.00 5.19
1791 3343 0.325933 CCCTCCTGAACTGCATGTCA 59.674 55.000 0.00 0.00 0.00 3.58
1923 3480 4.154942 TCATAGTCTGCATGAGCTCCATA 58.845 43.478 12.15 0.00 42.74 2.74
1941 3498 4.517815 GTCGGGCGGCCGTTCATA 62.518 66.667 43.56 26.10 34.52 2.15
1956 3513 1.113517 TATCCTGCCAGTAGCCCGTC 61.114 60.000 0.00 0.00 42.71 4.79
1996 3553 2.125106 GGTGTCCATCCGCCAGAC 60.125 66.667 0.00 0.00 35.02 3.51
2023 3580 2.440980 GGAGAATGGCCCCTGCAC 60.441 66.667 0.00 0.00 40.13 4.57
2121 3678 1.518367 AGAACTGGAGGTTGGACCAA 58.482 50.000 1.69 1.69 41.95 3.67
2178 3735 5.777223 TGATGACACCAAAATGATTAACCCA 59.223 36.000 0.00 0.00 0.00 4.51
2180 3737 6.152661 TCCTGATGACACCAAAATGATTAACC 59.847 38.462 0.00 0.00 0.00 2.85
2246 3803 4.267928 CGCTTGAAAGTACATAGTGCCTAC 59.732 45.833 0.00 0.00 0.00 3.18
2281 3848 5.006068 CACATATTCAGGACACACAATCGAG 59.994 44.000 0.00 0.00 0.00 4.04
2300 3867 3.020274 GAGAGAGAGACAGCCACACATA 58.980 50.000 0.00 0.00 0.00 2.29
2316 3883 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
2317 3884 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
2318 3885 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
2319 3886 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
2320 3887 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
2321 3888 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2322 3889 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2323 3890 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2324 3891 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2325 3892 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2326 3893 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2327 3894 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2328 3895 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2329 3896 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2330 3897 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2331 3898 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2332 3899 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2333 3900 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2334 3901 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2335 3902 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2336 3903 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2337 3904 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2338 3905 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2339 3906 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2340 3907 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2341 3908 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2342 3909 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2343 3910 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2344 3911 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2345 3912 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2346 3913 1.884235 TTCACACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
2347 3914 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
2348 3915 2.816672 ACATTTCACACACACACACACA 59.183 40.909 0.00 0.00 0.00 3.72
2349 3916 3.485947 ACATTTCACACACACACACAC 57.514 42.857 0.00 0.00 0.00 3.82
2491 4058 3.553105 CCATGATGATATATGTCCGCACG 59.447 47.826 0.00 0.00 0.00 5.34
2492 4059 3.310774 GCCATGATGATATATGTCCGCAC 59.689 47.826 0.00 0.00 0.00 5.34
2493 4060 3.534554 GCCATGATGATATATGTCCGCA 58.465 45.455 0.00 0.00 0.00 5.69
2494 4061 2.874701 GGCCATGATGATATATGTCCGC 59.125 50.000 0.00 0.00 0.00 5.54
2495 4062 4.141233 TGGCCATGATGATATATGTCCG 57.859 45.455 0.00 0.00 0.00 4.79
2513 4088 5.470368 TGTACTCGATGATAAGCTAATGGC 58.530 41.667 0.00 0.00 42.19 4.40
2514 4089 6.035435 GCATGTACTCGATGATAAGCTAATGG 59.965 42.308 0.00 0.00 0.00 3.16
2541 4116 1.869690 GAGAAAGTGCAGGAACCGC 59.130 57.895 0.00 0.00 0.00 5.68
2569 4144 6.849085 TTTGCATCTACATTTTGGTATGGT 57.151 33.333 0.00 0.00 0.00 3.55
2626 5749 8.142994 TCGCTAGAAATAAAATGTCCATCTTC 57.857 34.615 0.00 0.00 0.00 2.87
2640 5763 7.388224 ACATCTCGATCTACTTCGCTAGAAATA 59.612 37.037 0.00 0.00 38.97 1.40
2702 5825 6.701340 TCGAATCCAGGGAGATATATGTTTG 58.299 40.000 0.00 0.00 0.00 2.93
2715 5838 1.001974 TCACACACTTCGAATCCAGGG 59.998 52.381 0.00 0.00 0.00 4.45
2716 5839 2.455674 TCACACACTTCGAATCCAGG 57.544 50.000 0.00 0.00 0.00 4.45
2717 5840 3.125829 CCAATCACACACTTCGAATCCAG 59.874 47.826 0.00 0.00 0.00 3.86
2718 5841 3.073678 CCAATCACACACTTCGAATCCA 58.926 45.455 0.00 0.00 0.00 3.41
2719 5842 2.420022 CCCAATCACACACTTCGAATCC 59.580 50.000 0.00 0.00 0.00 3.01
2720 5843 2.159517 GCCCAATCACACACTTCGAATC 60.160 50.000 0.00 0.00 0.00 2.52
2721 5844 1.812571 GCCCAATCACACACTTCGAAT 59.187 47.619 0.00 0.00 0.00 3.34
2722 5845 1.234821 GCCCAATCACACACTTCGAA 58.765 50.000 0.00 0.00 0.00 3.71
2723 5846 0.107643 TGCCCAATCACACACTTCGA 59.892 50.000 0.00 0.00 0.00 3.71
2724 5847 0.238289 GTGCCCAATCACACACTTCG 59.762 55.000 0.00 0.00 36.77 3.79
2738 5868 1.404583 GGTTTCAGATTGCATGTGCCC 60.405 52.381 2.07 0.00 41.18 5.36
2739 5869 1.273048 TGGTTTCAGATTGCATGTGCC 59.727 47.619 2.07 0.00 41.18 5.01
2747 5878 3.355378 TGTGGGCTATGGTTTCAGATTG 58.645 45.455 0.00 0.00 0.00 2.67
2785 5916 0.393077 AACTCAACCTCGACCTGTGG 59.607 55.000 0.00 0.00 37.26 4.17
2787 5918 4.283722 AGAATTAACTCAACCTCGACCTGT 59.716 41.667 0.00 0.00 0.00 4.00
2799 5931 7.201644 GCTTTCGATGATTCCAGAATTAACTCA 60.202 37.037 0.00 0.00 0.00 3.41
2802 5934 6.785191 TGCTTTCGATGATTCCAGAATTAAC 58.215 36.000 0.00 0.00 0.00 2.01
2813 5950 4.516698 ACAAACTGACTGCTTTCGATGATT 59.483 37.500 0.00 0.00 0.00 2.57
2821 5958 3.429410 GCTTTGGACAAACTGACTGCTTT 60.429 43.478 0.00 0.00 0.00 3.51
2831 5968 5.063817 GCCATAATGATTGCTTTGGACAAAC 59.936 40.000 0.00 0.00 0.00 2.93
2851 5988 5.642163 TGTGCTACACTTGGTCTTGCCAT 62.642 47.826 0.00 0.00 38.54 4.40
2855 5992 1.532868 GCTGTGCTACACTTGGTCTTG 59.467 52.381 0.00 0.00 35.11 3.02
2856 5993 1.543429 GGCTGTGCTACACTTGGTCTT 60.543 52.381 0.00 0.00 35.11 3.01
2858 5995 1.291877 CGGCTGTGCTACACTTGGTC 61.292 60.000 0.00 0.00 35.11 4.02
2872 6009 1.434622 GACACATGATCCAGCGGCTG 61.435 60.000 22.84 22.84 0.00 4.85
2944 6081 3.041211 AGGTCTGCATATAGTTGCTGGA 58.959 45.455 5.64 0.07 43.18 3.86
2945 6082 3.136763 CAGGTCTGCATATAGTTGCTGG 58.863 50.000 5.64 0.00 43.18 4.85
2946 6083 3.801698 ACAGGTCTGCATATAGTTGCTG 58.198 45.455 0.00 0.24 43.18 4.41
2947 6084 4.080919 TCAACAGGTCTGCATATAGTTGCT 60.081 41.667 11.83 0.00 43.18 3.91
2948 6085 4.191544 TCAACAGGTCTGCATATAGTTGC 58.808 43.478 11.83 0.00 43.07 4.17
2949 6086 4.272018 GCTCAACAGGTCTGCATATAGTTG 59.728 45.833 10.90 10.90 36.97 3.16
2950 6087 4.446371 GCTCAACAGGTCTGCATATAGTT 58.554 43.478 0.00 0.00 0.00 2.24
2951 6088 3.491619 CGCTCAACAGGTCTGCATATAGT 60.492 47.826 0.00 0.00 0.00 2.12
2952 6089 3.055591 CGCTCAACAGGTCTGCATATAG 58.944 50.000 0.00 0.00 0.00 1.31
2953 6090 2.430694 ACGCTCAACAGGTCTGCATATA 59.569 45.455 0.00 0.00 0.00 0.86
2954 6091 1.208052 ACGCTCAACAGGTCTGCATAT 59.792 47.619 0.00 0.00 0.00 1.78
2955 6092 0.608130 ACGCTCAACAGGTCTGCATA 59.392 50.000 0.00 0.00 0.00 3.14
2956 6093 0.952497 CACGCTCAACAGGTCTGCAT 60.952 55.000 0.00 0.00 0.00 3.96
2957 6094 1.595109 CACGCTCAACAGGTCTGCA 60.595 57.895 0.00 0.00 0.00 4.41
2958 6095 1.287730 CTCACGCTCAACAGGTCTGC 61.288 60.000 0.00 0.00 0.00 4.26
2959 6096 0.032678 ACTCACGCTCAACAGGTCTG 59.967 55.000 0.00 0.00 0.00 3.51
2960 6097 0.032678 CACTCACGCTCAACAGGTCT 59.967 55.000 0.00 0.00 0.00 3.85
2961 6098 0.032130 TCACTCACGCTCAACAGGTC 59.968 55.000 0.00 0.00 0.00 3.85
2962 6099 0.464036 TTCACTCACGCTCAACAGGT 59.536 50.000 0.00 0.00 0.00 4.00
2963 6100 1.581934 TTTCACTCACGCTCAACAGG 58.418 50.000 0.00 0.00 0.00 4.00
2964 6101 3.062763 AGATTTCACTCACGCTCAACAG 58.937 45.455 0.00 0.00 0.00 3.16
2965 6102 3.111853 AGATTTCACTCACGCTCAACA 57.888 42.857 0.00 0.00 0.00 3.33
2966 6103 4.092091 CCTTAGATTTCACTCACGCTCAAC 59.908 45.833 0.00 0.00 0.00 3.18
2967 6104 4.021456 TCCTTAGATTTCACTCACGCTCAA 60.021 41.667 0.00 0.00 0.00 3.02
2968 6105 3.509967 TCCTTAGATTTCACTCACGCTCA 59.490 43.478 0.00 0.00 0.00 4.26
2969 6106 4.109050 CTCCTTAGATTTCACTCACGCTC 58.891 47.826 0.00 0.00 0.00 5.03
2970 6107 3.118956 CCTCCTTAGATTTCACTCACGCT 60.119 47.826 0.00 0.00 0.00 5.07
2971 6108 3.190874 CCTCCTTAGATTTCACTCACGC 58.809 50.000 0.00 0.00 0.00 5.34
2972 6109 3.786635 CCCTCCTTAGATTTCACTCACG 58.213 50.000 0.00 0.00 0.00 4.35
2973 6110 3.536570 GCCCTCCTTAGATTTCACTCAC 58.463 50.000 0.00 0.00 0.00 3.51
2974 6111 2.505819 GGCCCTCCTTAGATTTCACTCA 59.494 50.000 0.00 0.00 0.00 3.41
2975 6112 2.505819 TGGCCCTCCTTAGATTTCACTC 59.494 50.000 0.00 0.00 0.00 3.51
2976 6113 2.562296 TGGCCCTCCTTAGATTTCACT 58.438 47.619 0.00 0.00 0.00 3.41
2977 6114 3.366052 TTGGCCCTCCTTAGATTTCAC 57.634 47.619 0.00 0.00 0.00 3.18
2978 6115 4.086457 GTTTTGGCCCTCCTTAGATTTCA 58.914 43.478 0.00 0.00 0.00 2.69
2979 6116 4.086457 TGTTTTGGCCCTCCTTAGATTTC 58.914 43.478 0.00 0.00 0.00 2.17
2980 6117 4.126520 TGTTTTGGCCCTCCTTAGATTT 57.873 40.909 0.00 0.00 0.00 2.17
2981 6118 3.825908 TGTTTTGGCCCTCCTTAGATT 57.174 42.857 0.00 0.00 0.00 2.40
2982 6119 3.076032 AGTTGTTTTGGCCCTCCTTAGAT 59.924 43.478 0.00 0.00 0.00 1.98
2983 6120 2.445525 AGTTGTTTTGGCCCTCCTTAGA 59.554 45.455 0.00 0.00 0.00 2.10
2984 6121 2.876581 AGTTGTTTTGGCCCTCCTTAG 58.123 47.619 0.00 0.00 0.00 2.18
2985 6122 3.653836 TCTAGTTGTTTTGGCCCTCCTTA 59.346 43.478 0.00 0.00 0.00 2.69
2986 6123 2.445525 TCTAGTTGTTTTGGCCCTCCTT 59.554 45.455 0.00 0.00 0.00 3.36
2987 6124 2.040412 CTCTAGTTGTTTTGGCCCTCCT 59.960 50.000 0.00 0.00 0.00 3.69
2988 6125 2.039879 TCTCTAGTTGTTTTGGCCCTCC 59.960 50.000 0.00 0.00 0.00 4.30
2989 6126 3.418684 TCTCTAGTTGTTTTGGCCCTC 57.581 47.619 0.00 0.00 0.00 4.30
2990 6127 4.388577 AATCTCTAGTTGTTTTGGCCCT 57.611 40.909 0.00 0.00 0.00 5.19
2991 6128 5.497474 TCTAATCTCTAGTTGTTTTGGCCC 58.503 41.667 0.00 0.00 0.00 5.80
2992 6129 6.407202 TCTCTAATCTCTAGTTGTTTTGGCC 58.593 40.000 0.00 0.00 0.00 5.36
2993 6130 6.536941 CCTCTCTAATCTCTAGTTGTTTTGGC 59.463 42.308 0.00 0.00 0.00 4.52
2994 6131 6.536941 GCCTCTCTAATCTCTAGTTGTTTTGG 59.463 42.308 0.00 0.00 0.00 3.28
2995 6132 6.536941 GGCCTCTCTAATCTCTAGTTGTTTTG 59.463 42.308 0.00 0.00 0.00 2.44
2996 6133 6.628398 CGGCCTCTCTAATCTCTAGTTGTTTT 60.628 42.308 0.00 0.00 0.00 2.43
2997 6134 5.163499 CGGCCTCTCTAATCTCTAGTTGTTT 60.163 44.000 0.00 0.00 0.00 2.83
2998 6135 4.339814 CGGCCTCTCTAATCTCTAGTTGTT 59.660 45.833 0.00 0.00 0.00 2.83
2999 6136 3.886505 CGGCCTCTCTAATCTCTAGTTGT 59.113 47.826 0.00 0.00 0.00 3.32
3000 6137 3.254657 CCGGCCTCTCTAATCTCTAGTTG 59.745 52.174 0.00 0.00 0.00 3.16
3001 6138 3.492337 CCGGCCTCTCTAATCTCTAGTT 58.508 50.000 0.00 0.00 0.00 2.24
3002 6139 2.224917 CCCGGCCTCTCTAATCTCTAGT 60.225 54.545 0.00 0.00 0.00 2.57
3003 6140 2.442413 CCCGGCCTCTCTAATCTCTAG 58.558 57.143 0.00 0.00 0.00 2.43
3004 6141 1.075698 CCCCGGCCTCTCTAATCTCTA 59.924 57.143 0.00 0.00 0.00 2.43
3005 6142 0.178947 CCCCGGCCTCTCTAATCTCT 60.179 60.000 0.00 0.00 0.00 3.10
3006 6143 0.178958 TCCCCGGCCTCTCTAATCTC 60.179 60.000 0.00 0.00 0.00 2.75
3007 6144 0.489567 ATCCCCGGCCTCTCTAATCT 59.510 55.000 0.00 0.00 0.00 2.40
3008 6145 1.353091 AATCCCCGGCCTCTCTAATC 58.647 55.000 0.00 0.00 0.00 1.75
3009 6146 2.541466 CTAATCCCCGGCCTCTCTAAT 58.459 52.381 0.00 0.00 0.00 1.73
3010 6147 2.011122 CTAATCCCCGGCCTCTCTAA 57.989 55.000 0.00 0.00 0.00 2.10
3011 6148 0.542232 GCTAATCCCCGGCCTCTCTA 60.542 60.000 0.00 0.00 0.00 2.43
3012 6149 1.839296 GCTAATCCCCGGCCTCTCT 60.839 63.158 0.00 0.00 0.00 3.10
3013 6150 2.105806 CTGCTAATCCCCGGCCTCTC 62.106 65.000 0.00 0.00 0.00 3.20
3014 6151 2.040884 TGCTAATCCCCGGCCTCT 60.041 61.111 0.00 0.00 0.00 3.69
3015 6152 2.427753 CTGCTAATCCCCGGCCTC 59.572 66.667 0.00 0.00 0.00 4.70
3016 6153 3.171388 CCTGCTAATCCCCGGCCT 61.171 66.667 0.00 0.00 0.00 5.19
3017 6154 4.271016 CCCTGCTAATCCCCGGCC 62.271 72.222 0.00 0.00 0.00 6.13
3018 6155 2.567664 AAACCCTGCTAATCCCCGGC 62.568 60.000 0.00 0.00 0.00 6.13
3019 6156 0.033503 AAAACCCTGCTAATCCCCGG 60.034 55.000 0.00 0.00 0.00 5.73
3020 6157 1.847328 AAAAACCCTGCTAATCCCCG 58.153 50.000 0.00 0.00 0.00 5.73
3038 6175 5.600484 TGAATCTTGCTTTACCCCTCAAAAA 59.400 36.000 0.00 0.00 0.00 1.94
3039 6176 5.144100 TGAATCTTGCTTTACCCCTCAAAA 58.856 37.500 0.00 0.00 0.00 2.44
3040 6177 4.735369 TGAATCTTGCTTTACCCCTCAAA 58.265 39.130 0.00 0.00 0.00 2.69
3041 6178 4.380843 TGAATCTTGCTTTACCCCTCAA 57.619 40.909 0.00 0.00 0.00 3.02
3042 6179 4.526970 GATGAATCTTGCTTTACCCCTCA 58.473 43.478 0.00 0.00 0.00 3.86
3043 6180 3.561725 CGATGAATCTTGCTTTACCCCTC 59.438 47.826 0.00 0.00 0.00 4.30
3044 6181 3.199946 TCGATGAATCTTGCTTTACCCCT 59.800 43.478 0.00 0.00 0.00 4.79
3045 6182 3.541632 TCGATGAATCTTGCTTTACCCC 58.458 45.455 0.00 0.00 0.00 4.95
3046 6183 4.636206 ACTTCGATGAATCTTGCTTTACCC 59.364 41.667 5.16 0.00 0.00 3.69
3047 6184 5.220681 GGACTTCGATGAATCTTGCTTTACC 60.221 44.000 5.16 0.00 0.00 2.85
3048 6185 5.351465 TGGACTTCGATGAATCTTGCTTTAC 59.649 40.000 5.16 0.00 0.00 2.01
3049 6186 5.351465 GTGGACTTCGATGAATCTTGCTTTA 59.649 40.000 5.16 0.00 0.00 1.85
3050 6187 4.154918 GTGGACTTCGATGAATCTTGCTTT 59.845 41.667 5.16 0.00 0.00 3.51
3051 6188 3.686726 GTGGACTTCGATGAATCTTGCTT 59.313 43.478 5.16 0.00 0.00 3.91
3052 6189 3.265791 GTGGACTTCGATGAATCTTGCT 58.734 45.455 5.16 0.00 0.00 3.91
3053 6190 3.002791 TGTGGACTTCGATGAATCTTGC 58.997 45.455 5.16 0.00 0.00 4.01
3054 6191 4.495349 GCATGTGGACTTCGATGAATCTTG 60.495 45.833 5.16 3.30 0.00 3.02
3055 6192 3.624861 GCATGTGGACTTCGATGAATCTT 59.375 43.478 5.16 0.00 0.00 2.40
3056 6193 3.201290 GCATGTGGACTTCGATGAATCT 58.799 45.455 5.16 0.00 0.00 2.40
3057 6194 2.938451 TGCATGTGGACTTCGATGAATC 59.062 45.455 5.16 0.00 0.00 2.52
3058 6195 2.941064 CTGCATGTGGACTTCGATGAAT 59.059 45.455 5.16 0.00 0.00 2.57
3059 6196 2.289631 ACTGCATGTGGACTTCGATGAA 60.290 45.455 5.16 0.00 0.00 2.57
3060 6197 1.276138 ACTGCATGTGGACTTCGATGA 59.724 47.619 5.16 0.00 0.00 2.92
3061 6198 1.395954 CACTGCATGTGGACTTCGATG 59.604 52.381 8.03 0.00 42.68 3.84
3062 6199 1.730501 CACTGCATGTGGACTTCGAT 58.269 50.000 8.03 0.00 42.68 3.59
3063 6200 3.215642 CACTGCATGTGGACTTCGA 57.784 52.632 8.03 0.00 42.68 3.71
3071 6208 1.134699 AGACGTATCCCACTGCATGTG 60.135 52.381 8.73 8.73 45.80 3.21
3072 6209 1.195115 AGACGTATCCCACTGCATGT 58.805 50.000 0.00 0.00 0.00 3.21
3073 6210 2.315925 AAGACGTATCCCACTGCATG 57.684 50.000 0.00 0.00 0.00 4.06
3074 6211 2.632377 CAAAGACGTATCCCACTGCAT 58.368 47.619 0.00 0.00 0.00 3.96
3075 6212 1.338674 CCAAAGACGTATCCCACTGCA 60.339 52.381 0.00 0.00 0.00 4.41
3076 6213 1.338769 ACCAAAGACGTATCCCACTGC 60.339 52.381 0.00 0.00 0.00 4.40
3077 6214 2.028476 TGACCAAAGACGTATCCCACTG 60.028 50.000 0.00 0.00 0.00 3.66
3078 6215 2.253610 TGACCAAAGACGTATCCCACT 58.746 47.619 0.00 0.00 0.00 4.00
3079 6216 2.754946 TGACCAAAGACGTATCCCAC 57.245 50.000 0.00 0.00 0.00 4.61
3080 6217 3.386726 CCTATGACCAAAGACGTATCCCA 59.613 47.826 0.00 0.00 0.00 4.37
3081 6218 3.244112 CCCTATGACCAAAGACGTATCCC 60.244 52.174 0.00 0.00 0.00 3.85
3082 6219 3.802675 GCCCTATGACCAAAGACGTATCC 60.803 52.174 0.00 0.00 0.00 2.59
3083 6220 3.069729 AGCCCTATGACCAAAGACGTATC 59.930 47.826 0.00 0.00 0.00 2.24
3084 6221 3.039011 AGCCCTATGACCAAAGACGTAT 58.961 45.455 0.00 0.00 0.00 3.06
3085 6222 2.167693 CAGCCCTATGACCAAAGACGTA 59.832 50.000 0.00 0.00 0.00 3.57
3086 6223 1.066143 CAGCCCTATGACCAAAGACGT 60.066 52.381 0.00 0.00 0.00 4.34
3087 6224 1.656652 CAGCCCTATGACCAAAGACG 58.343 55.000 0.00 0.00 0.00 4.18
3088 6225 2.019156 GCCAGCCCTATGACCAAAGAC 61.019 57.143 0.00 0.00 0.00 3.01
3089 6226 0.255890 GCCAGCCCTATGACCAAAGA 59.744 55.000 0.00 0.00 0.00 2.52
3090 6227 0.753111 GGCCAGCCCTATGACCAAAG 60.753 60.000 0.00 0.00 0.00 2.77
3091 6228 1.306296 GGCCAGCCCTATGACCAAA 59.694 57.895 0.00 0.00 0.00 3.28
3092 6229 1.505151 TTGGCCAGCCCTATGACCAA 61.505 55.000 5.11 0.00 34.91 3.67
3093 6230 1.505151 TTTGGCCAGCCCTATGACCA 61.505 55.000 5.11 0.00 34.56 4.02
3094 6231 1.037579 GTTTGGCCAGCCCTATGACC 61.038 60.000 5.11 0.00 34.56 4.02
3095 6232 1.037579 GGTTTGGCCAGCCCTATGAC 61.038 60.000 15.37 2.60 37.17 3.06
3096 6233 1.306296 GGTTTGGCCAGCCCTATGA 59.694 57.895 15.37 0.00 37.17 2.15
3097 6234 1.000233 TGGTTTGGCCAGCCCTATG 60.000 57.895 21.26 0.00 43.61 2.23
3098 6235 3.519291 TGGTTTGGCCAGCCCTAT 58.481 55.556 21.26 0.00 43.61 2.57
3108 6245 1.338960 GGGATGCCATGTTTGGTTTGG 60.339 52.381 0.00 0.00 45.57 3.28
3109 6246 1.347050 TGGGATGCCATGTTTGGTTTG 59.653 47.619 0.00 0.00 45.57 2.93
3110 6247 1.624813 CTGGGATGCCATGTTTGGTTT 59.375 47.619 6.34 0.00 45.57 3.27
3111 6248 1.203162 TCTGGGATGCCATGTTTGGTT 60.203 47.619 6.34 0.00 45.57 3.67
3112 6249 0.409092 TCTGGGATGCCATGTTTGGT 59.591 50.000 6.34 0.00 45.57 3.67
3113 6250 0.819582 GTCTGGGATGCCATGTTTGG 59.180 55.000 6.34 0.00 46.66 3.28
3114 6251 0.819582 GGTCTGGGATGCCATGTTTG 59.180 55.000 6.34 0.00 0.00 2.93
3115 6252 0.706433 AGGTCTGGGATGCCATGTTT 59.294 50.000 6.34 0.00 0.00 2.83
3116 6253 0.257039 GAGGTCTGGGATGCCATGTT 59.743 55.000 6.34 0.00 0.00 2.71
3117 6254 0.622738 AGAGGTCTGGGATGCCATGT 60.623 55.000 6.34 0.00 0.00 3.21
3118 6255 0.549950 AAGAGGTCTGGGATGCCATG 59.450 55.000 6.34 1.04 0.00 3.66
3119 6256 0.549950 CAAGAGGTCTGGGATGCCAT 59.450 55.000 6.34 0.00 0.00 4.40
3120 6257 0.547471 TCAAGAGGTCTGGGATGCCA 60.547 55.000 5.57 5.57 0.00 4.92
3121 6258 0.107459 GTCAAGAGGTCTGGGATGCC 60.107 60.000 0.00 0.00 0.00 4.40
3122 6259 0.615331 TGTCAAGAGGTCTGGGATGC 59.385 55.000 0.00 0.00 0.00 3.91
3123 6260 3.341823 CTTTGTCAAGAGGTCTGGGATG 58.658 50.000 0.00 0.00 30.57 3.51
3124 6261 2.290577 GCTTTGTCAAGAGGTCTGGGAT 60.291 50.000 0.00 0.00 30.57 3.85
3125 6262 1.072331 GCTTTGTCAAGAGGTCTGGGA 59.928 52.381 0.00 0.00 30.57 4.37
3126 6263 1.528129 GCTTTGTCAAGAGGTCTGGG 58.472 55.000 0.00 0.00 30.57 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.