>input_sequence_59368
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----------------------ATGGCTGGCGTCTCCA------------------------------------------
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-----GCAATGCCATTGCCCTTGTG------GCACTCCTCTCCATGCTCTTCACGTCCGTCCGTTCTGCGGTCAACTACG
ACACCGCCGTCGCTAGATCCTACACCTCCGGCTGGCTCCCAGCCAAGGCCACCTGGTACGGAGCGCCCAACGGCGCCGGC
CCCGACGACAACGGTACGTCTAT-------------ATGA----TCCGATGACGGCACATATTTTCATGTCGTCGCTGCA
CTAAATCA------------------------TA---------GTACTAATAATGCTGATGCACCG-------ATCGATT
TGCAGGTGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCAATCTCCTCCATGGGGGCATGCGGTAACGAGCCTATTT
TCGCCGGCGGCGAGGGCTGTGGCATGTGCTACGAGGTACACGTAC----T---GCATTAATTGCACCATGCATGGCGCCG
ACACCCGACAGTTTCAGTTAAATTAGTTGATGGTGATCATTTTATTAGTTGGTCAAACTCAAACCTGACAGCATCTCCAT
TTTACGATATCGGTGACTTTTAATTAGTGAATACCCCTGCTGCCATGTGCATGCAAAGCACAATGTACTCCATGGCCAAG
TA------------CGTTGACATTTAATTTGTTTTGCTCTGTGCTTCAGATTAAGTGCGAGTACTCCAACAACCCTTCTT
GCTCAGGCCAGCCGAGGAGGATCGTCATCACCGACATGAACTATTACCCCGTGGCCAGGTACCACCTCGACCTCAGTGGC
ACCGCGTTCGGCTCCATGGCCAAGTACGGCCTCAACGACCGGCTCCGCCACGCCGGCATCATTGACA-----TGCAGTTC
AGGAGGGTGCCCTGCAACTTCCCGGGTATGAAGGTGACCTTCCACGTCCAGCGTGGCTCCAACCCCAACTATCTCGCGGT
GCTCGTGGAGTACGTGAATGTGGACGGGACCGTGGTGCGTATGGAGCTCATGCAGACTATGAACGGCCGCCCGACGGGCT
ACTGGCAGGATATGCGCCGCTCGTGGGGCTCCGTCTGGCGGATGGACACCAACCGCCCGGTGCAGGGGCCATTCTCCATC
CGCATCACCAGCGATACCGGAAAGACGCTGGTCGCCAACAATGCCATCCCGGCTTATTGGCAGCAGGACCATGCCTATTG
GTCCAACCTCCAGTTCTACTGA----------------------------------------------------------
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>chr1B_1_TraesCS1B01G225800
CTCGGCTGACATGCCATGTGGCATGACCTGGGAGCTGCTTAGGCCCAAATAGCACTGCCCAGTTTCTTTGTAAGCCGAGT
GCA-TTTTAAAAATACTCTGCTT---------TTCTGTATTAAACGTAGATATCGGCTTACATGTATGTCGTGAACATGC
AACATAAATTCAACTTACGCCAGACACGTGGCTGCAGGCGATCGTTCCGGGATGAAAAATTAAACCGAGTGGTACACTCG
GTTTAGGGAGGTGCCATGTGGCACTACCATCGATGTTAGTCGTCCGTCATATCATTTATGTTGCCGAGAACCACTGTTTT
GAACTCGGCTT-TAGGTAAGTCGAGTGCCCATGAATAGGATCTTTGCTTACATCTTATAAGTCGGTCTAATATAAACCGA
GCGGCCTAAGTC-GGGTGCAACACTCGATTTATAGTAAGCAGAGTTGAAATTGGCCTTTGCCGAGTATTTTTGGTACTCG
GGTTTATTTGATTTTCCTGTAGTGTGAAAACCTCTTTAGCATCATTCCCTCGCGAAGCATGGCAATGCGTTAAGATAAGC
GAACCGTATAT--CCTTCGTATCACGACTGCAGGATACAACGTG-GGGCCTGATCTTAGGGCAT----AACGATGGTCTG
ACTTTCTCTGCAATCAACAATTTTGACTTGTGCACCCACAAAATCATTAGCGGGTGCTCGGTGATCACCTGCCAAGATGT
GATTTTATAGTTG--------TGCGCGCGTAAACCGGTGCCTCTC--CATTCCCCTCCATGATTCCCTCCGTAGCCATGT
GACCTTGCAGCTCTAAACACGCCATCACGTAG------TCGTCGGGTGCAACTGCAACTTGCGCCGACTCGTCGTTCTCA
CCTCATTTTGCCTATTGGCTTGCCTATAAATGCCTCGGCAATGTCATCCCCTCCAGCCATCACAAC--------------
---AGAAACAGGAGTAGTACTACTACTC---CAGCCTCCGGCGAGTACATACCCTACAAGTC---TAAGAAGGTTCATAG
AA----GACCTGTAGTGCCAATATGGCTGGCGTCTCCA------------------------------------------
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-----GCAATGCCATTGCCCTTGTG------GCACTCCTCTCCATGCTCTTCACGTCCGTCCGTTCTGCGGTCAACTACG
ACACCGCCGTCGCTAGATCCTACACCTCCGGCTGGCTCCCAGCCAAGGCCACCTGGTACGGAGCGCCCAACGGCGCCGGC
CCCGACGACAACGGTACGTCTAT-------------ATGA----TCCGATGACGGCACATATTTTCATGTCGTCGCTGCA
CTAAATCA------------------------TA---------GTACTAATAATGCTGATGCACCG-------ATCGATT
TGCAGGTGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCAATCTCCTCCATGGGGGCATGCGGTAACGAGCCTATTT
TCGCCGGCGGCGAGGGCTGTGGCATGTGCTACGAGGTACACGTAC----T---GCATTAATTGCACCATGCATGGCGCCG
ACACCCGACAGTTTCAGTTAAATTAGTTGATGGTGATCATTTTATTAGTTGGTCAAACTCAAACCTGACAGCATCTCCAT
TTTACGATATCGGTGACTTTTAATTAGTGAATACCCCTGCTGCCATGTGCATGCAAAGCACAATGTACTCCATGGCCAAG
TA------------CGTTGACATTTAATTTGTTTTGCTCTGTGCTTCAGATTAAGTGCGAGTACTCCAACAACCCTTCTT
GCTCAGGCCAGCCGAGGAGGATCGTCATCACCGACATGAACTATTACCCCGTGGCCAGGTACCACCTCGACCTCAGTGGC
ACCGCGTTCGGCTCCATGGCCAAGTACGGCCTCAACGACCGGCTCCGCCACGCCGGCATCATTGACA-----TGCAGTTC
AGGAGGGTGCCCTGCAACTTCCCGGGTATGAAGGTGACCTTCCACGTCCAGCGTGGCTCCAACCCCAACTATCTCGCGGT
GCTCGTGGAGTACGTGAATGTGGACGGGACCGTGGTGCGTATGGAGCTCATGCAGACTATGAACGGCCGCCCGACGGGCT
ACTGGCAGGATATGCGCCGCTCGTGGGGCTCCGTCTGGCGGATGGACACCAACCGCCCGGTGCAGGGGCCATTCTCCATC
CGCATCACCAGCGATACCGGAAAGACGCTGGTCGCCAACAATGCCATCCCGGCTTATTGGCAGCAGGACCATGCCTATTG
GTCCAACCTCCAGTTCTACTGATTTGCTTACGTGCGTACTTCTCCGATCGATGCTGGGTTAATCATTTTGGTGTCATCAG
GATGATCCCTATTTACGATGATCGAATGATTTTAAGTTATTAGTAGGCACTATGTACTTT----------CAAGCGTGTT
AACTGTCCTCGATTGTGTGTCCTGAATATGTGTGGCTGTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGAAATGTAAGGAGCTAGGCAAGTGGAGTAGCATCCATGTGCTACCCCGGCCACTATCGCAGTTCCATGCCT
GATAAAGTGTGATCCAATTAAGCTTATAAATTAATTCAAATGGATGAAGTTTATGGCCGTGC--------GGACATATAT
CATCATGGCCATTAGCTTATCATCGAGTACATGCCGCGGTTCCTGCACTTTCTCGTTCCACGAACCAT------------
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----------------ACCAAAATGTAGATGCAAATTTTGCAAATATTTTTTTTTCTTCCTTAGAGATGAAGATGGACAT
TTTATTTCTAGCGAAGTAGATCGAGATGTACATTTGCCGTCTATGTCCTTTTTTCTTGCTTTGACAAACATATATCTCCC
TGGATTC-------GAAGTGTGTGATTGG-GCACATGCAATCTGAAACCATAGCCCACAGGTAATTAGGAGGGGACCA-C
AGGTCGAGGTTGAG-----TTAATTCTGGAATCATCGAAAGCAGTCAGTTTGTCCAAAGCAATCATTATGGCAAGACCAA
GTGTAGCACAGCCGCTGGATCATGTGTCGTGTGAGAATCGGGCATAGAGTGTCGGCGCCGAGTAGTACCGAAGTGCTAGC
TCCAGCAACTATATGCAGACCTGTTGAGCGTGAGTGAAATCTAAGGAGGGCCAAAACAACTAGAGATTAGAGAGGCCGGG
GATTAGCAGGGTTTTTTTTGAGGGGTAAAGCAAGATTCATCGAAGTCCACATGCAGTGGGATACGTCTTTGGTCATAGGG
CTGGCCAAACCAAACATGGCATCCCAGACCTCTTGACAAAGC
>chr1D_1
CTCGGCTTACATGCCACGTGGCACGACCTGGGGCTTCTCAT-GCCCAAATAGCACCGCCCAGTTTCTTTGCAAACCGAGT
GCATTTCTAAAAGCACTCTACTTACATTTACGTTGTGTATTAAGCGTAGACATCGAATTACATGTACACCATGAACATGC
AACATATAGTCGGCTTACACCAGACACGTGGCTGGAGGCGATCGTTCCGGGATGAAAAATTAAGCCGGCTTCG-------
------------------------------------------------------TTTATGTTGCCGAGAACCACTGTTTT
GAACTCGGCTTATAGGTAAGTCGAGTGCCCATAGATGGGATCTGTGCTTATATCTTATAAGTCGGTGTAATATAAGTCGA
GCCGAGTAAGT-GGGGTGCAACACTCGACTTATAGCAAGCAGAGTTGAAATTGGCCTTTGCCGAGTATTTTTAGTACTCG
GGTTTATTTGGTTTTCCTGTGGTGTGAAAACCTCTTTAGCATCATTCCCTCGCGAAGCATGACAATGCGTTAAGATAAGC
GAACCGTATATATCCTTCGTATCAGGACGGCAGGATACAACGTGGGGGCCTGATCTTAGGGCAT----AACGATGGTCTG
ACTTTCTCTACAATCAACAA-TTTGACTTGTGCACCCAAAAAATCATTAGCGGGTGCTCGGTGATCTCCT-GCAAGATGT
GATTTTATAGTTG--------TGCGCGCGTAAACCGGTGCCTCGC--CATT--CCTCCATGATTCCCTCCGTAGCCATGT
GACCTTGCAGCTCTAAACACGCCATCACGTAG------TCGTCGGGTGCAACTGCAACTTGCGCCGACTCGTCCTTCTCA
CCTCATTTTGCCTATTGGCTTGCCTATAAATGCCCCGGCAATGTCACCCCGTCCAGCCATCACAAC--------------
---ACAAACAGGAGTACTACTACTACTCCG---GTCTTCAGCGATATTGGCG-CTACAAGTC---TAAGAAGGTTCATAG
ACGTACGACCTGTAGCGCCAATATGGCTGGCCTCTCCA------------------------------------------
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-----CCAATGCCATTGCCCTTGTG------GCACTCCTCTCCGTGCTCTTCACGTCCGTCCGTTCTGCGGTCGACTACG
ACACCGCCGTCGCTAGATCCTACAACTCCGGCTGGCTCCCCGCCAAGGCCACCTGGTACGGGGCGCCCAACGGCGCCGGC
CCCGACGACAATGGTACGTCTAT-------------AGGA----TCCGATGACGGCACATATTTTCATGCCGTCGCTGTA
CCAAATCATATACTCGTG--------CCAACTTA---------GTACTAATAATGTTGATCCACCG-------ATCGATT
TGCAGGTGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCAATCTCTTCCATGGGGGCATGCGGTAACGAGCCTATTT
TCGCCGGCGGCGAGGGCTGTGGCATGTGCTACGAGGTAC--GTACAA-------CATTAATTGCACCATGCATGGCGCCG
ACACCCGACAGTTTCAGTTAAATTAGTTGATGGTGATCATTTTATTAGTTGGTCAAACTCAAACCTGACAGCATCTCCAT
TTTACGATATCGGTGACTTTTAATTAGTGAACACCCCTGCTGCCATGTGCTTGCAAAGCACAATGTACTCCATGCCCAAG
TACGTACATCGGGACGTTGACCTTTAATTTGTTTTGCTCTGTGCTTCAGATTAAATGCGAGTACTCCAACAACCCTTCCT
GCTCCGGCCAGCCGAGGAGGATCGTCATCACCGACATGAACTACTACCCCGTGGCCAGGTACCACCTCGACCTCAGTGGC
ACCGCGTTCGGCTCCATGGCCAGGTACGGCCTCAACGACCGGCTCCGCCACGCCGGCATCATCGACA-----TGCAGTTC
AGGAGGGTGCCCTGCAACTTCCCGGGTATGAAGGTGACCTTCCACGTCCAGCGTGGCTCCAACCCCAACTATCTCGCGGT
GCTCGTGGAATACGTGAATGTGGACGGGACCGTGGTGCGGATGGAGCTCATGCAGACCATCAACGGCCGCCCTACGGGCT
ACTGGCAGGACATGCGCCGCTCGTGGGGCTCCATCTGGCGGATGGACACCAACCGCCGGCTGCAGGGGCCATTCGCCATC
CGCATCACCAGCGACACCGGAAAGACGCTGGTGGCCAACAATGCCATTCCGGCTTATTGGCAGCCGGACCATGCCTACTG
GTCCAACCTCCAGTTCTACTGATTTGCTTACGTGCGTACTTCTCCGATCGATGCCGAGTTAATCATTTTGGTGTCATCAG
GACGATCCCTATTTACGAGGATCGAATGATTTTAAGTTATTACTAGGCACTATGTACTTT----------CAAGCGTGTT
AACTGTCGTCGATTGTGTGTCCTGAAGATGTGTGGCTGTCTT----------------------------------TGTA
TGTGTGTGTGAAATGTAAGGAGCTAGGCAAGTGGAGTAGCATCCATGTGCTACCCCGGCCACTACCGCGGTTCCATGCCT
GATAGAGTGTGATCCAATTGAGCTTATAAATTAATTCAAATGGATGAAGTTTATGGCATATATACAGTGTGGACATATAT
CATCATGTGCATTAGCTTATCATCGAGTATATGCCACGGTTCTTGCGCTTTCTTGTTCCACGACCCATACCAAAATGGCT
CAGTGGTTGGGCATGCGGTTGTGCAGCCTAACGATCCGAGTTCAATTCCTAGAATTGACAGGTGATGCACAGGGGTTTTC
CCCCATTTATTGAGAATCAAGTTTGATGTGTGGTGGAACCACTCATCAAAAAATATCTTGATACTCATTTAAAAAATTCG
GAGGACCATGTTTATCTTGGTACTCATACTAAAATGGTCGTATGTATCCCTAGTTGGTGCAGAGGCCGGGAAGTGAAATT
CTCCCCCTTATACTTAGCCCGTGACCTCCTTCCCCCGTGCGGCGGCGCCGCGCCGCACCGGGGCCTCCCCGCCAGGCCTC
CCCCTCCTCCCGCCGGGCCTCCCTCTCCTCCCGCCGCCGCCGCCGAGGGCATCGCAGGCTAAGCCTGTGGGCCGCAGCGG
CGGCGGCGGCAATCTTCCTCGGCCGGCGATCGGATCTGGGTGGCGGCGACATACTCCGGCCGATCCAAGGGCGATGGCGC
AGGCTGGTGGCGACCAGGGCTGTCGTGCTGGTGCCGGCGACGAAGAGATCACGTCGGCGGCTAGGGTGTCCGATCTGGAT
CCCATTCGGATCTGGATGGTGGTTCCTCGAGCCGTCGTGCGCATCCTTTGTTCCGGCGCGGCAAGCGGCCTCTGGACTAG
GCACGCAACACGAGGACGTCGGGGGCTCTGGCCCTTGGCGTGGAGGTGGTGGCCATCTTCTTCGCCGGAGGCGGTCGACT
AGATGGTTGTGGATTCTCGCATCCAGTCCAGGTGTACAGTGGGGAGACGGGGCTGTCGGTGAAAACCGTGCTATGACTCG
GGTCATGGCGGGCGATGGCGGCGTTTTCGCGTCGTTATCTTGTTGAAGACATTGCCTTTGCAGCTTCTGTCGACTTGCTT
GCGCTGCTCTGGGTGAAAACCTTGATCCGGAGTTTCCGGATCGGACGATGGCGGTGCTTTTGGGGCGTCGTTTTCCCTCA
TGGGGGCATCGTTTTTTGAGCAGCGGCTGGATGCAGGACCAGAGGACGGATTCTTTGGTGGAGCGGTGCGGCATCTCACT
CATTAATGGCGGCGGGTCTCGGCGGCATGGCGCTGTGGTGACTCTGCGTCCGATGCGCGAAGATGGACTCGCGCAGGAGG
GTGACGCGGTCTGGCGTCGTGGTGGCGTTGACGGCAGCTAGACCGGGCAAGGTTGATGCATCAGTACAGCTTTGAAGATG
GATTTGTGGCAGGTGGCTGCGGCGGCCTCAGACCCGGCAGGCGTCCTGGTTGAGGAGTGCGCCGGACTGGTAGGTGACCC
ATAGCCGGCAGGCGTCCTGGATGGGACCTCAGGTCTTTGATGTTAGGTTTGGCTGCGAGGTCTGTTTGATACTAGGCCCA
GACTATCAGCATCCCTTCATCACTTGGATAGGAGTAGCGACACTTTTGTTGCCTAGTCGGTGGTTTCAGTCTTACTGTTG
TATGACTTTGTAAGGTCTTGTGTGAATAATTAATAAAGTGGCTGCATGCATCGTCCAGATGCAGAGGTCGGGGGTCCTCC
TCCATTTAAAAGAAAAACCAAAATGTAGATGAAAATCTTGCAA----TTTTTTTCCTTCCTTAGAGATCAAGATGGACAT
TTCATTTCTAGCGAAGTAGATCGAGATGTACATTTGCCGTCTACGTCTTTTTTCCTTGCTTTGATAAACATATATCTGTT
CCCGGATTCGGTAGGAAATGTGTGATTCACGCACATGAAATCTGAAACCATAGCCCACAGGTAATTAGAAGCCGAACGGC
AGGTCGAGGTGGAAATTAATTAATTCTGGGATCATCGGAAGCAGTCATTTTGTCCAAAGCAACCATTCTGGTCAAACCAA
GTGTAGCATAGCCGCTGGATCATGTGTCGTGTGAGAATCGGGCATAGAGTGTCGGCGCCGAGTAGTACCGAAGTGCTAGC
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>chr1A_388
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------------------------------------------------------------------------------GA
GCGGAGTAAGTGGGGGTGCAACACTCGACTTATAGTAAGCAGAGCTGAAATTGGCCTTTGCTGAGTATTTTTAGTACTTC
GTTTTATTTGATTTTCGTGTAGTGTGAAAACCTCTTTAGCATCATTACCTCGCGAAGCATGGCAATGCGTTAAGATAAGC
GAAGCG--TATATCCTTCGTATCAGGACGGCAGGATACAACGTGGGGGCCTGATCTTAGGGCAT----AACGATGGTCTG
ACTTTCTCTGCAATCAACAA-TTTGACTTGTGCACCCAAAAAATCATTAGCGGGTGCCCGGTGATCCCCTGCCAAGATGT
GATTTTATAGTTG--------CGCGCGCGTAAACCGGTGCCTCGC--CATT--CCTCCATGATTCCCTCCGTAGCCATGT
GACCTTGCAGCTCTAAACACGCCATCACGTAG------TCGTCGGGTGCAACTG------------ACTCGTCGTTCTCA
CCTCA-TTTGCCTATTGGCTTGCCTATAAATGCCCCGGCAATGTCATCCCCTCCAGCCATCACAAC--------------
---ACAAACAGGAGTAGTACTACTACTC---CAGTCTCCGGCGAGTACATACCCTACAGGTC---CAACAAGGTTCATAG
----ACGACCTGTAGCGCCAATATGGCTGGCGTCTCCA------------------------------------------
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-----GCAATGCCATTGCCCTTGTG------GCACTCCTCTCCGTGCTCTTCACGGGCGTCCGTTCTGCGGTCAACTACG
ACACCGCCGTCGCTAGATCCTACAACTCTGGCTGGCTCCCCGCCAAGGCCACCTGGTACGGGGCGCCCAACGGCGCCGGC
CCCGACGACAACGGTACGTCCAT-------------ACGA----TACCATGACGGCACATATTTTCATGCCGTCGCTGTA
CTAAATCATATAGTCGTG--------CCAACTTAGTACTAGTGGTACTAAAAATGTTGATCCACCG-------ATCGATT
TGCAGGTGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCAATCTCCTCCATGGGGGCATGCGGTAACGAGCCTATTT
TCGCCGGCGGCGAGGGCTGTGGCATGTGCTACGAGGTAC--GTAC----T---GCATTAATTGCACCATGCATGGCGCCG
ACACCCGACACTTTCAGTTAAATTAGTTGATGGTGATCATTTTATTAGTTGGTCAAACTCAAACCTGACAGCATCTCCAT
TTTACGATATCGGTGACTTTTGATTAGTGAGCACTCCTGCTGCCATGTGCATGCAAAGCACAATGTACTCCATGGCCAAG
TA------------CGTTGACCTTTAATTTGTTTTGCTCTATGCTTCAGATTAAGTGCGACTACTCCAACAACCCTTCCT
GCTCCGGCCAGCCGAGGAGGATCGTCATCACCGACATGAACTACTACCCCGTGGCCAGGTACCACCTCGACCTCAGTGGC
ACCGCATTCGGCTCCATGGCCAGGTACGGCCTCAACGACCGGCTCCGCCACGCCGGCATCATCGACA-----TGCAGTTC
AGGAGGGTGCCCTGCAACTTCCCGGGTATGAAGGTGACCTTCCACGTCCAGCGTGGCTCCAACCCTAACTATCTCGCGGT
GCTCGTGGAGTACGCGAACGTGGACGGGACCGTGGTGCGGATGGAGCTCATGCAGACCATCAACGGCCGCCCAACGGGCT
ACTATCAGGATATGCGCCGCTCGTGGGGCTCCATCTGGCGGATGGACACCAACCGCCCGCTGCAGGGGCCATTCGCCATC
CGCATCACCAGCGATACCGGAAAGACGCTGGTGGCCAACAATGCCATCCCGGCTTATTGGCAGCCGGACCATGCCTACTG
GTCCAACCTCCAGTTCTATTGATTGGCTTACGTGCGTACTTCTCCGATCGATGCCGAGTTAATCATTTTGGTGTCATCAG
CATGATCCCTATTTGTGAGGATCTAATGATTTTAAGTTATTGCCAGGCACTATCTACTTTCAAGCGTTAACAAGCGTGTT
AACTGTCGTCGATTGTGTGTCGGGAAGATGTGTGGCTGTCTC----------------------------------TCTG
TGCGTGTGTGAAATGTAAGGAGCTAGGCAAGTGGAGTAGCATCCATGTGCTACCCCGGCCACTATCGCAGTTCCAGGCCT
GATAGAGTGTGATCCAATTGAGCTTATAAATTAATTCAAATGGATGAAGTTTATGGCATATATACAGTTTGGACATATGT
CATCATGCGCATTAGCTTATCATCGAGTATATGCCACGGTTCCTGCGCTTTCTTGTTCCACGACCCAT------------
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----------------ACCAAAATGTAGATGAAAATCTTGCAA----TTTTTTTCCTTCCTTAGAGATCAAGATGGACAT
TTCATTTCTAGCGAAGTAGATCGAGATGTACATTTGCCGTCTACGTCCTTTTTTTTG-----------------------
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>chr6A_580
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---------------------------------GATATAACGTG-CGGCCTGGTCTTATGGCATATGTAACGATGGTCTG
ACTTTGTCTGCAATCAACAA-CTTGACTTGTGCACCCCCCAAATGATTAGCGGATGATCAGTGATCACCG-CCAATATGT
GATTGTA---TTG--------TACGCGCGTAAACCGGCCGGTGCCTGTATT--CCTCCATGATTCCCTCCGTAGCCATGT
GACCCTGTAGCCCTAAATACGCCATCCGCGTAGTCGTCTCGTCGGGTGCAACTGCAACTTGCGCCGGCTCGTCGTTCTCA
CCTCGTTTCGCTTATTGGCCTGCCTATAAATGCCCTGGCAATGTCATCCCGTCCAGCCATCACAAGTTCACAACACAACA
CAAACT----GGAGTAGTACAACTACTTCTGCAGTCTCCAGCGAGTACACATCCTACAAGTC---TAGGAAGGTTCATAG
----TCCACCTATAGTGCCAATATGGCTGGCATCTCCA------------------------------------------
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-----CCAACGACATTGCCATTGTGCTTGTGGCACTTCTCTCCGTGCTTGTCACGTCCGTCCGTTCTGCGGCCAACTACG
ACACCTCCGCCGCTAGATCCTACAACTCCGGCTGGCTCCCCGCCAAGGCCACCTGGTACGGTGCGCCCACCGGCGCCGGC
CCCAACGACAACGGTATGCCCAGCCTATATGTTCCGATCA----TCCGATGACTGCGCACATTTTCATGCATCACATGC-
------------GTAGTGTGCGTGTGCCAACTTATA-------CTAGAAATAATGCTGATCTACCCATGGATAATGGATT
TGCAGGCGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCCTTCTCCTCCATGACGTCCTGCGGCAACGAGCCTCTCT
TCGACGGCGGCGCAGGCTGCGGCAGCTGCTACGAGGTAC--GTAC----TACTGCATTAAT-------------------
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>chr6D_580
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---------------------------------GATATAACGTG-CGGCCTGGTCTTATGGCATATGTAACGATGGTCTG
ACTTTGTCTGCAATCAACAA-CTTGACTTGTGCACCCCCCAAATGATTAGCGGATGATCGGTGATCACCG-TCAATATGT
GATTGTA---TTG--------TACGCGCGTAAACCAGCCGGTGCCTGTATT--CCTCTATGATTCCCTCCGTAGCCATGT
GAGCCTGTAGCCCTAAACACGCCATCCGCGTAGTCGTCTCGTCGGGTGCAACTGCAACTTGCGCCGACTCGTCGTTCTCA
CCTCATTTCGCCTATTGGCCTGCCTATAAATGCCCAGGCAATGTCATCCCGTCCAGCCATCACAAGTTCACAACACAA--
---ACAAACAGGAATAGTACAT--------------------------ATATCCTACAAGGTTAGCAAGAAGGTTCATAG
TCGA-------------CCAATATGGCTGGCATCTCCA------------------------------------------
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-----CCAATGCCATTGTCCTTGTGCTTGTGGCACTCCTCTCCGTGCTCGTCACGTCCGTCCGTTGTGCGGCCAACTACG
ACACCGCCGCCGCTAGATCCTACAACTCCGGCTGGCTCCCCGCCAAGGCCACCTGGTACGGAGCACCCACCGGCGCCGGC
CCCATGGACAACGGTACGCCCAT-------------ATCTATGCTCCCATGGCGGCGCACATTTTCATGCATCAACTAT-
------------GTACG---------------------TAGTGCTAGTAATAGTGCTGATCTACGG-------ATGGATT
TGCAGGCGGTGCTTGCGGTTTCAAGAACGTGAACCAGTACCCCTTCTCCTCCATGACGTCCTGCGGCAACGAGCCTCTCT
TCGACGGCGGCGCCGGCTGCGGCAGCTGCTACGAGGTAC--GTACGTAATACTGCATTAATT------------------
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>chrUn_660
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--------------------------------------CAAAATGATTAGCGGATGCTCGGTGATCACCA-CCAATATGT
GATTTTATATATAGTCGTACATACGCGCGTAAACCGGCCAG-GCCTGCATT--CCTCCATGATTCCCTCCGTAGCCATGT
GAGCTTGTAGTCCTAAACACGTCATACGCGTAGTCATCTCCTCGGCTGCAATGGCAACTTGCGCCGGCTCGTCGTTCTCA
CCTCATTTTGGCTGTTGGCCTGCCTATAAATTCTCCAGCCTCCAG-----------------------------------
-----------------------------------------------------------------TAAGAAGGTTCACAG
ACAA-------------CCAATATGGCTGGCGTCTCCACCCAAGGGTGGACACGGTCCGGGCCGGTCCGGTCCCGGTCCG
AGCCGTCGATTGGACCGGCCGCCGGCGGTCCGGTCCGGACCGGACCGAGCAGTGCAGCGGTCCTGATTTCAGGGACCGGA
CTGGCGGACGTGAAGCTCGGTGCGGACCGGCGGTCCTCACGATCCCGGCGACGTCCAGTCACTGACACGTGGGCTCAGGA
TGTCCGACAGGTGGTCGGAGAAGCAGCAACGTGGCCGGAGTCGGAGAAGACGTACTTGATGGCGGCGCGGCGGTGCGAGG
GAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGCGGCACGGCCGCGTGGGGGAGAGGGG
GAGCAGCCGCGCGAGGGAGCGGCGGCGCGAGGCGGAGGCTCGGCAGCGCGAGGCGAAGGCGCGGTGGCGCTGGGGAGAGG
AAGGCGAGGGAGAGGGGGCGGCGCGACTGGTAGCCTTGAGCGTCCGCAAGTATATTTTTAGCAGGTTTTTTCCGTTGCAT
GCAAATAATTTAGCGCATGCATGGGCCCACGATTTTCCTTGTATGGACCTTGCCGTGATTGGTGGATTAATTCTGACGTG
AAGTTAGTCGTGGGATGACACCATGATTGTCGGATCGAATCATTTTTGTTTCTCTCGTTCCTTCTATTTTCTGCATGTTC
GTCTGAATAAGAGGAAACTGCGTCATGGGATGGCGTCTGAATAATAGGAAACTGCGTCATAAGAGGAAACTGATTTCTCA
CGTTAGTGGCAACTAAAAGGAACGAAGCGAGGAATTGTCGTGGAAAGCGCCTAAATTATCGGATCGAATCATGTTTATCT
CGTTCTCTCTATTTTCTGTCGACTGATTAAAAAGAAAACAGAACGGTAGGGCGTGACTGCCTCTTGCTCCTGTGTGACTC
TCAGATAATCACGGGTGTGATGGCGTCTTCTTTCTATTTTCTGTTCTCTTCTACTCCTTCTGTAAACTAATATAAGAGCG
TTTAGATCACTGAAATAGTGATCTAAACACTCTTATATTAATTTACGGAGGGAGTACATCACTGGCGACACGAGTTTTCT
TTTTTGTTCGACTGAATAAACGGAAACAAATCAAGGAGGGCCGCGCCCACAAGCGGGAGAAGGACGGCGGGGCGTGGTCG
TGGTCACTCAGCGCGCGGATCTCACCGGCCAGAGCGTGGTGGCCGCGATGACGAGGAACGGCCTGCAGCGCGCTTCGGTC
CGCTCGGTCGGCTCGGTCAAAGACCGGACCGGTCTGACAAAATTTCGGGCCTAAATTGTGTAACCGGACCGGCTAATTTC
TTCAACAGGTCAGGATCGAACGGTCCGGTCTCAAACGGGCCACGAGCGGGCCGAAAAGCCCGCTCGCTCCGTCCAGGCTG
GTCCACCAATGACATTGCCCTTGTGCTTGTGGCACTCCTCTCCGTGCTCGTCACGTCCGTCCGTTCTGTGGCCAACTACG
ACACCTCCGCCGCCAGATCCTACAACTCCGGCTGGCTGCCCGCCAAGGCCACCTGGTACGGAGCGCCCACCGGCGCCGGA
CCCAACGACAACGGTACGACCAT-------------ATATATATA----------CACACATTTGCATGCATCACATAC-
------------GTAGTG--------CCAACTTACA--------TAGTAATAATGCTGATCTACGG-------ATGGATT
TGCAGGCGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCATTCTCCTCCATGACGTCCTGCGGCAACGAGCCTCTGT
TCGACGGTGGCGCAGGCTGCGGCAGCTGCTATGAGGTAC--GTAC----TACTGCATTACTTATCT-------------G
ACACCCGACAGTGTCAGTTAAATTAGTTGGTCAAATCAAC----------------------------------------
---------------------------------------CTACCACGTGCATGCAAAGTATGCAT---------------
--------------CGTTGACCTGTACGTGTTTCATCCAGATCCGATGTGTCGCCG---------CCAACAACCCTTCCT
GCTCCGGCTAGCCGAGGAGGGTGGTCATCACCGACATGAACTACTACCCCGTGGCCAGGTACCACTTCGACCTCAGTGGC
ACGGCGTTCGGGGCCATGGCCAAGAACGGCCTCAACGACAAGCTCCGCCACGCCGGCATCATCGACACGCAGTGCAGTTC
AGGAGGGTGCGCTGCAACTTCCCGGGCATGAAGGTCACCTTCCACGTCCAGCGTGGCTCCAACCCTAACTACCTCGCGGT
GCTCGTGGAGTACGCCGACGTGGATGGGACCGTGGTGCGGATGGAGCTGATGCAGACCAGGAACGGCCGCCCCACGGGGT
TCTGGGAGCCGATGCGGCGCTCCTGGGGATCCATCTGGCGGATGGACACCAGCCGCCCGCTGCAGGGGGCCTTCTCCATG
CGCATCACCAGCGACTCCGGCAAGACGCTGGTGGCCAACAATGTCATCCCGGCCTACTGGCGGCCGGACAAAGCCTACGG
GTCCAACGTCCAGTTCTATTGATTT-------------------------------------------------------
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>chrUn_660
--------------------------------------------------------------------------------
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--------------------------------------CAAAATGATTAGCGGATGCTCGGTGATCACCA-CCAATATGT
GATTTTATATATAGTCGTACATACGCGCGTAAACCGGCCAG-GCCTGCATT--CCTCCATGATTCCCTCCGTAGCCATGT
GAGCTTGTAGTCCTAAACACGTCATACGCGTAGTCATCTCCTCGGCTGCAATGGCAACTTGCGCCGGCTCGTCGTTCTCA
CCTCATTTTGGCTGTTGGCCTGCCTATAAATTCTCCAGCCTCCAG-----------------------------------
-----------------------------------------------------------------TAAGAAGGTTCACAG
ACAA-------------CCAATATGGCTGGCGTCTCCACCCAAGGGTGGACACGGTCCGGGCCGGTCCGGTCCCGGTCCG
AGCCGTCGATTGGACCGGCCGCCGGCGGTCCGGTCCGGACCGGACCGAGCAGTGCAGCGGTCCTGATTTCAGGGACCGGA
CTGGCGGACGTGAAGCTCGGTGCGGACCGGCGGTCCTCACGATCCCGGCGACGTCCAGTCACTGACACGTGGGCTCAGGA
TGTCCGACAGGTGGTCGGAGAAGCAGCAACGTGGCCGGAGTCGGAGAAGACGTACTTGATGGCGGCGCGGCGGTGCGAGG
GAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGCGGCACGGCCGCGTGGGGGAGAGGGG
GAGCAGCCGCGCGAGGGAGCGGCGGCGCGAGGCGGAGGCTCGGCAGCGCGAGGCGAAGGCGCGGTGGCGCTGGGGAGAGG
AAGGCGAGGGAGAGGGGGCGGCGCGACTGGTAGCCTTGAGCGTCCGCAAGTATATTTTTAGCAGGTTTTTTCCGTTGCAT
GCAAATAATTTAGCGCATGCATGGGCCCACGATTTTCCTTGTATGGACCTTGCCGTGATTGGTGGATTAATTCTGACGTG
AAGTTAGTCGTGGGATGACACCATGATTGTCGGATCGAATCATTTTTGTTTCTCTCGTTCCTTCTATTTTCTGCATGTTC
GTCTGAATAAGAGGAAACTGCGTCATGGGATGGCGTCTGAATAATAGGAAACTGCGTCATAAGAGGAAACTGATTTCTCA
CGTTAGTGGCAACTAAAAGGAACGAAGCGAGGAATTGTCGTGGAAAGCGCCTAAATTATCGGATCGAATCATGTTTATCT
CGTTCTCTCTATTTTCTGTCGACTGATTAAAAAGAAAACAGAACGGTAGGGCGTGACTGCCTCTTGCTCCTGTGTGACTC
TCAGATAATCACGGGTGTGATGGCGTCTTCTTTCTATTTTCTGTTCTCTTCTACTCCTTCTGTAAACTAATATAAGAGCG
TTTAGATCACTGAAATAGTGATCTAAACACTCTTATATTAATTTACGGAGGGAGTACATCACTGGCGACACGAGTTTTCT
TTTTTGTTCGACTGAATAAACGGAAACAAATCAAGGAGGGCCGCGCCCACAAGCGGGAGAAGGACGGCGGGGCGTGGTCG
TGGTCACTCAGCGCGCGGATCTCACCGGCCAGAGCGTGGTGGCCGCGATGACGAGGAACGGCCTGCAGCGCGCTTCGGTC
CGCTCGGTCGGCTCGGTCAAAGACCGGACCGGTCTGACAAAATTTCGGGCCTAAATTGTGTAACCGGACCGGCTAATTTC
TTCAACAGGTCAGGATCGAACGGTCCGGTCTCAAACGGGCCACGAGCGGGCCGAAAAGCCCGCTCGCTCCGTCCAGGCTG
GTCCACCAATGACATTGCCCTTGTGCTTGTGGCACTCCTCTCCGTGCTCGTCACGTCCGTCCGTTCTGTGGCCAACTACG
ACACCTCCGCCGCCAGATCCTACAACTCCGGCTGGCTGCCCGCCAAGGCCACCTGGTACGGAGCGCCCACCGGCGCCGGA
CCCAACGACAACGGTACGACCAT-------------ATATATATA----------CACACATTTGCATGCATCACATAC-
------------GTAGTG--------CCAACTTACA--------TAGTAATAATGCTGATCTACGG-------ATGGATT
TGCAGGCGGTGCTTGCGGCTTCAAGAACGTGAACCAGTACCCATTCTCCTCCATGACGTCCTGCGGCAACGAGCCTCTGT
TCGACGGTGGCGCAGGCTGCGGCAGCTGCTATGAGGTAC--GTAC----TACTGCATTACTT------------------
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>chr6A_765
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------GCCATGT
TACCTTGGAGCCCTAAACACGCCATACGCGTAGCCGTCTCGTCGGATGCAACTGCAACATGCGCCGACTCGTCGTTCCCA
CCTCATTTTGCCCATTGGCCTGCCTATAAATGCCCTGGCAATGTCATCCCGTCCAGCCATCACAAGTTCACAACACAACA
CAAACAAACAGGAGTAGTACAACTACTTCTGCAGTCTCCAGCGAGTA------------GTC---TAGGAAGGTTCATAG
----TCCACCTATAGTGCCAATATGGCTGGCGTCTCCA------------------------------------------
--------------------------------------------------------------------------------
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-----CCAACGACATTGCCATTGTGCTTGTGGCACTTCTCTCCGTGCTCGTCACGTCCGTCTGTTCTGCGGCCAACTACG
ACACCTCCGCCGCCAGATCCTACAACTCCGGCTGGCTGCCCGCCAAGGCCACCTGGTACGGAGCGCCCACCGGCGCCGGA
CCCAACGACAACGGTACGACCAT-------------ATATATAT------------ACACATTTGCATGCATCACGTTC-
------------GCAGTG--------CCAACTTACA--------TAGTAATAATGCTGTTCTCCTCCATT----TGGATT
TGCAGGCGGTGCTTGCGGCTTCAAGAACGTCAACCAGTACCCTTTCTCCTCCATG-------------------------
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>SNPs
-------S--------S------S--------SSS-SSSSSS-------------S--------------S--S------
------S-----SS-----S--------------S--------S------S----SS---------SSS-S---------
------S-S--SS-----S---------------S----------------------------S---SS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
--------------------------------SS--S------S------S---------------S--------SS---
----SS-----S----------------S-------------------------------------------S-------
--------------------------------------------------------------------------------
------------------------S---S---------------------------------------------------
--------------------S-----------------------------------------------------------
-------------------------------------------S-------SS---------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
----S-----------------------------S---------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
------------------------S---------------S---------------------------------------
---------------------------------------------------------------------S----------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
---------------------------------------SS---------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
---------------------S--------------------------------------------------------S-
----S--------------------------------------S------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------S--------------S-------
--------------------------------S--------------------------S--------------------
--------------------------------S-------------------------------S------------S--
------------------------------------------------------S-S-----------------------
------------------S-----------------------S-------------------------------------
-------S------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------------------------------------
----S--------------S-------------------------------------SSSSS------------------
-------SS--------------------S-----S----------S------S---------S----------------
--------------------------------------------------------------------------------
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-------------------------------S----S------SSSS-------S-------------S-----------
--S----------------------------------------S--------------------S------------SSS
SSSSSSS----------S---------SS--------S------------------------------S--SS--S-S--
----------S--S---------------S-------S---------S--------------S----S---SS-S-----
--------S-----------------------------------------------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_412
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TAAACCGA
GCGGCCTAAGTC--------------------------------------------------------------------
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------------------------------------------
>reverse_3343
--------------------------------------------------------------------------------
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--------------------------------------------------------------TGACATGCAGTTCAGGAG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>forward_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----GCCGTCGCTAGATCCTACAC-------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>reverse_6098
--------------------------------------------------------------------------------
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-----------------GACCTGTTGAGCGTGAGTGA-------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
