Multiple sequence alignment - TraesCS1B01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G219300 chr1B 100.000 3938 0 0 1 3938 396596929 396592992 0.000000e+00 7273
1 TraesCS1B01G219300 chr1B 96.386 83 3 0 3296 3378 543023057 543023139 1.910000e-28 137
2 TraesCS1B01G219300 chr1B 93.976 83 5 0 3296 3378 171887313 171887395 4.130000e-25 126
3 TraesCS1B01G219300 chr1A 92.896 2393 106 29 1563 3935 368362673 368360325 0.000000e+00 3419
4 TraesCS1B01G219300 chr1A 94.236 1596 47 17 5 1562 368364292 368362704 0.000000e+00 2396
5 TraesCS1B01G219300 chr1A 93.976 83 5 0 3296 3378 61089287 61089369 4.130000e-25 126
6 TraesCS1B01G219300 chr1D 96.140 1658 33 5 1563 3198 295185200 295183552 0.000000e+00 2678
7 TraesCS1B01G219300 chr1D 95.937 1575 37 16 5 1562 295186795 295185231 0.000000e+00 2529
8 TraesCS1B01G219300 chr1D 88.111 757 57 22 3204 3938 295147773 295147028 0.000000e+00 869
9 TraesCS1B01G219300 chr1D 94.286 105 5 1 2078 2182 354518920 354519023 4.070000e-35 159
10 TraesCS1B01G219300 chr2A 94.949 99 3 2 2078 2175 587158260 587158357 1.890000e-33 154
11 TraesCS1B01G219300 chr4D 94.000 100 6 0 2076 2175 503153842 503153941 6.820000e-33 152
12 TraesCS1B01G219300 chr4B 92.453 106 8 0 2070 2175 618087758 618087863 6.820000e-33 152
13 TraesCS1B01G219300 chr4B 93.976 83 5 0 3296 3378 186741668 186741750 4.130000e-25 126
14 TraesCS1B01G219300 chr5D 90.351 114 11 0 2066 2179 134782097 134782210 2.450000e-32 150
15 TraesCS1B01G219300 chr5B 93.269 104 4 3 2078 2179 316712702 316712600 2.450000e-32 150
16 TraesCS1B01G219300 chr5B 94.382 89 5 0 3290 3378 693877672 693877760 1.910000e-28 137
17 TraesCS1B01G219300 chr4A 92.453 106 7 1 2071 2176 66915081 66914977 2.450000e-32 150
18 TraesCS1B01G219300 chr6A 93.407 91 3 3 3289 3378 308174318 308174406 8.880000e-27 132
19 TraesCS1B01G219300 chr2D 96.250 80 3 0 3299 3378 7661703 7661624 8.880000e-27 132
20 TraesCS1B01G219300 chr7D 92.135 89 5 2 3291 3378 1943590 1943677 1.490000e-24 124
21 TraesCS1B01G219300 chr3A 91.304 92 6 1 3287 3378 21228470 21228381 1.490000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G219300 chr1B 396592992 396596929 3937 True 7273.0 7273 100.0000 1 3938 1 chr1B.!!$R1 3937
1 TraesCS1B01G219300 chr1A 368360325 368364292 3967 True 2907.5 3419 93.5660 5 3935 2 chr1A.!!$R1 3930
2 TraesCS1B01G219300 chr1D 295183552 295186795 3243 True 2603.5 2678 96.0385 5 3198 2 chr1D.!!$R2 3193
3 TraesCS1B01G219300 chr1D 295147028 295147773 745 True 869.0 869 88.1110 3204 3938 1 chr1D.!!$R1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 743 0.034896 GAAGGAAACCCTCTGCGTCA 59.965 55.0 0.0 0.0 32.44 4.35 F
2343 2415 0.250901 GGAACTGCAAAGAGCCTGGA 60.251 55.0 0.0 0.0 44.83 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2619 2691 1.095600 CCCTCTCGTTGATCTCGTCA 58.904 55.0 9.75 0.0 34.25 4.35 R
3873 3991 1.042229 TTGCAAAACTGCCATCTGCT 58.958 45.0 0.00 0.0 42.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.289834 CACAAGCGCCACAGCCTT 61.290 61.111 2.29 0.00 38.01 4.35
77 78 3.063725 CGACTTCTAGTCTTCTACGGGTG 59.936 52.174 5.41 0.00 42.92 4.61
236 241 3.518998 CATCGCGAGTCGGGGTCT 61.519 66.667 26.79 11.26 40.17 3.85
341 346 1.306141 TTCCCTGCTGGAGATCCGT 60.306 57.895 11.88 0.00 46.24 4.69
377 382 1.861971 GGTTTCGTCGACTTCACCTT 58.138 50.000 14.70 0.00 0.00 3.50
397 402 0.239879 CACCTAATTTGCGCCGTGTT 59.760 50.000 4.18 0.00 0.00 3.32
398 403 1.465387 CACCTAATTTGCGCCGTGTTA 59.535 47.619 4.18 0.00 0.00 2.41
411 416 0.373716 CGTGTTAGCAGAAATCGGCC 59.626 55.000 0.00 0.00 37.79 6.13
412 417 0.733150 GTGTTAGCAGAAATCGGCCC 59.267 55.000 0.00 0.00 37.79 5.80
420 425 1.818363 GAAATCGGCCCGTCTTCCC 60.818 63.158 1.63 0.00 0.00 3.97
519 536 0.326927 CGCCCCTAGGGTTTCTTTCA 59.673 55.000 26.66 0.00 46.51 2.69
520 537 1.064685 CGCCCCTAGGGTTTCTTTCAT 60.065 52.381 26.66 0.00 46.51 2.57
606 624 2.401583 TGTTGATAATCCAGCGTGCT 57.598 45.000 0.00 0.00 0.00 4.40
666 691 8.769891 GTCAGGTGGTAAAACAAAATTTATTGG 58.230 33.333 0.00 0.00 34.56 3.16
674 699 5.731957 AACAAAATTTATTGGTAGGGCGT 57.268 34.783 0.00 0.00 34.56 5.68
681 706 1.762708 ATTGGTAGGGCGTGAATTGG 58.237 50.000 0.00 0.00 0.00 3.16
685 710 0.035820 GTAGGGCGTGAATTGGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
688 713 0.965363 GGGCGTGAATTGGGTGATGT 60.965 55.000 0.00 0.00 0.00 3.06
711 736 1.064825 TGTCTGGGAAGGAAACCCTC 58.935 55.000 0.00 0.00 46.82 4.30
718 743 0.034896 GAAGGAAACCCTCTGCGTCA 59.965 55.000 0.00 0.00 32.44 4.35
764 790 0.795698 TTGCATGTCGTGAATGGTCG 59.204 50.000 0.00 0.00 0.00 4.79
798 824 2.047560 AAGTTCGTGCGGCCTACC 60.048 61.111 0.00 0.00 0.00 3.18
1193 1223 4.759782 TGCTTTCTCTCCTAACTGTATGC 58.240 43.478 0.00 0.00 0.00 3.14
1557 1597 2.356069 GCCCTGCTATTTTCTAGTGCAC 59.644 50.000 9.40 9.40 0.00 4.57
1663 1733 9.261035 TGGGGTTTTCATGCTTTTAATATTCTA 57.739 29.630 0.00 0.00 0.00 2.10
1813 1883 8.414003 TCTAGTATCAGCGTGAATTGATAGTTT 58.586 33.333 7.03 0.00 39.46 2.66
2020 2091 8.902540 ATGATACTTGAAGTTTGAACTGTACA 57.097 30.769 1.97 0.00 39.66 2.90
2208 2279 4.020573 ACGTTATTCTTCCATGTGACCAGA 60.021 41.667 0.00 0.00 0.00 3.86
2209 2280 4.568359 CGTTATTCTTCCATGTGACCAGAG 59.432 45.833 0.00 0.00 0.00 3.35
2260 2332 4.589216 TCTTCTGAGGCAAAAACATTGG 57.411 40.909 0.00 0.00 0.00 3.16
2268 2340 2.137523 GCAAAAACATTGGCCACTCAG 58.862 47.619 3.88 0.00 0.00 3.35
2343 2415 0.250901 GGAACTGCAAAGAGCCTGGA 60.251 55.000 0.00 0.00 44.83 3.86
2619 2691 0.684153 CCCGTCAATGCCCCAAATCT 60.684 55.000 0.00 0.00 0.00 2.40
2662 2734 4.148825 CTCCTCCCTTCCGTGGCG 62.149 72.222 0.00 0.00 0.00 5.69
2700 2793 2.456119 CGGTGATGCTCTGTTCCGC 61.456 63.158 0.00 0.00 0.00 5.54
2706 2799 4.681978 GCTCTGTTCCGCGGTGGT 62.682 66.667 27.15 0.00 39.52 4.16
2889 2982 1.803334 GTGGTCACATGGCTTACGAA 58.197 50.000 0.00 0.00 0.00 3.85
2993 3086 4.378770 CCTTTTGATCCATCGTGTTGTGAG 60.379 45.833 0.00 0.00 0.00 3.51
3001 3094 3.308053 CCATCGTGTTGTGAGTCATCATC 59.692 47.826 0.00 0.00 37.87 2.92
3024 3117 2.916111 GACGTGCGTCATGTTTTTGAT 58.084 42.857 18.32 0.00 44.02 2.57
3029 3122 4.041049 GTGCGTCATGTTTTTGATTGTCA 58.959 39.130 0.00 0.00 0.00 3.58
3031 3124 4.739228 TGCGTCATGTTTTTGATTGTCAAG 59.261 37.500 0.00 0.00 37.70 3.02
3034 3127 5.507149 CGTCATGTTTTTGATTGTCAAGGGA 60.507 40.000 0.00 0.00 37.70 4.20
3035 3128 6.458210 GTCATGTTTTTGATTGTCAAGGGAT 58.542 36.000 0.00 0.00 37.70 3.85
3037 3130 6.930164 TCATGTTTTTGATTGTCAAGGGATTG 59.070 34.615 0.00 0.00 37.70 2.67
3254 3348 5.102313 TCTATATGAATGGAGCGCGTTATG 58.898 41.667 8.43 0.00 0.00 1.90
3300 3397 9.048446 TGGTCTAAACTGTGTTTTCAGTATTAC 57.952 33.333 0.94 0.00 46.25 1.89
3304 3401 7.506328 AAACTGTGTTTTCAGTATTACTCCC 57.494 36.000 0.00 0.00 46.25 4.30
3305 3402 6.435292 ACTGTGTTTTCAGTATTACTCCCT 57.565 37.500 0.00 0.00 45.31 4.20
3306 3403 6.465084 ACTGTGTTTTCAGTATTACTCCCTC 58.535 40.000 0.00 0.00 45.31 4.30
3307 3404 5.801380 TGTGTTTTCAGTATTACTCCCTCC 58.199 41.667 0.00 0.00 0.00 4.30
3308 3405 4.868734 GTGTTTTCAGTATTACTCCCTCCG 59.131 45.833 0.00 0.00 0.00 4.63
3310 3407 4.996788 TTTCAGTATTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
3311 3408 3.947612 TCAGTATTACTCCCTCCGTCT 57.052 47.619 0.00 0.00 0.00 4.18
3312 3409 3.818180 TCAGTATTACTCCCTCCGTCTC 58.182 50.000 0.00 0.00 0.00 3.36
3313 3410 3.201487 TCAGTATTACTCCCTCCGTCTCA 59.799 47.826 0.00 0.00 0.00 3.27
3316 3413 5.021458 AGTATTACTCCCTCCGTCTCAAAA 58.979 41.667 0.00 0.00 0.00 2.44
3317 3414 5.661759 AGTATTACTCCCTCCGTCTCAAAAT 59.338 40.000 0.00 0.00 0.00 1.82
3318 3415 6.837568 AGTATTACTCCCTCCGTCTCAAAATA 59.162 38.462 0.00 0.00 0.00 1.40
3322 3419 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
3323 3420 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
3324 3421 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
3326 3423 5.238583 CCTCCGTCTCAAAATAAGTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
3327 3424 6.395629 CCTCCGTCTCAAAATAAGTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
3329 3426 7.063544 CCTCCGTCTCAAAATAAGTGTCTTAAG 59.936 40.741 0.00 0.00 0.00 1.85
3330 3427 6.367969 TCCGTCTCAAAATAAGTGTCTTAAGC 59.632 38.462 0.00 0.00 0.00 3.09
3333 3430 8.922676 CGTCTCAAAATAAGTGTCTTAAGCTTA 58.077 33.333 0.86 0.86 0.00 3.09
3335 3432 9.998106 TCTCAAAATAAGTGTCTTAAGCTTAGT 57.002 29.630 6.24 0.00 0.00 2.24
3372 3469 9.372369 ACTAGAGCTAATACAAAATTGAGACAC 57.628 33.333 0.00 0.00 0.00 3.67
3373 3470 9.593134 CTAGAGCTAATACAAAATTGAGACACT 57.407 33.333 0.00 0.00 0.00 3.55
3374 3471 8.854614 AGAGCTAATACAAAATTGAGACACTT 57.145 30.769 0.00 0.00 0.00 3.16
3416 3519 0.882042 ACTGGAGCTTGCGTGTGAAG 60.882 55.000 0.00 0.00 0.00 3.02
3433 3536 6.312672 CGTGTGAAGTGAAATGGATGTACATA 59.687 38.462 8.71 0.00 0.00 2.29
3500 3606 3.557595 AGCGCACAAGCTTAATCATACTC 59.442 43.478 11.47 0.00 46.80 2.59
3522 3629 5.569355 TCTTCTATTGAAAGCCAATCCACA 58.431 37.500 0.00 0.00 43.96 4.17
3531 3638 5.822519 TGAAAGCCAATCCACAGACATATAC 59.177 40.000 0.00 0.00 0.00 1.47
3532 3639 3.995199 AGCCAATCCACAGACATATACG 58.005 45.455 0.00 0.00 0.00 3.06
3533 3640 3.388024 AGCCAATCCACAGACATATACGT 59.612 43.478 0.00 0.00 0.00 3.57
3616 3723 2.100584 GGATGTTCACCACACTTGCAAA 59.899 45.455 0.00 0.00 38.61 3.68
3743 3855 9.921637 CTCTATAAGACCATCTAATCCAACTTC 57.078 37.037 0.00 0.00 0.00 3.01
3812 3927 6.238676 CCAGATCCTTCAACTATTTCATGCAG 60.239 42.308 0.00 0.00 0.00 4.41
3813 3928 5.826737 AGATCCTTCAACTATTTCATGCAGG 59.173 40.000 0.00 0.00 0.00 4.85
3814 3929 4.272489 TCCTTCAACTATTTCATGCAGGG 58.728 43.478 0.00 0.00 29.81 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.781307 TGGTGGGCCGGAATCGAG 61.781 66.667 5.05 0.00 39.00 4.04
15 16 3.663176 CTGTGGCGCTTGTGGTGG 61.663 66.667 7.64 0.00 0.00 4.61
16 17 4.332637 GCTGTGGCGCTTGTGGTG 62.333 66.667 7.64 0.00 0.00 4.17
36 37 7.750014 AGAAGTCGTAACGCAAAGTTTTAAAAA 59.250 29.630 1.31 0.00 43.86 1.94
77 78 3.172919 GCTCACAGAAAGCGAGCC 58.827 61.111 0.00 0.00 44.70 4.70
236 241 3.371063 GCGACGGTGAGGGACAGA 61.371 66.667 0.00 0.00 0.00 3.41
288 293 3.136123 CCCTACGAGTCCGGCGAA 61.136 66.667 9.30 0.00 40.78 4.70
377 382 0.604243 ACACGGCGCAAATTAGGTGA 60.604 50.000 10.83 0.00 0.00 4.02
397 402 1.143183 GACGGGCCGATTTCTGCTA 59.857 57.895 35.78 0.00 0.00 3.49
398 403 2.125106 GACGGGCCGATTTCTGCT 60.125 61.111 35.78 7.12 0.00 4.24
411 416 0.527817 CGAAATCTCGGGGAAGACGG 60.528 60.000 0.00 0.00 41.57 4.79
412 417 2.959275 CGAAATCTCGGGGAAGACG 58.041 57.895 0.00 0.00 41.57 4.18
420 425 2.995810 AGCTAAAGGCACGAAATCTCGG 60.996 50.000 0.00 0.00 43.38 4.63
538 556 2.232452 CCATGCTCCTAAGTCCTATCGG 59.768 54.545 0.00 0.00 0.00 4.18
606 624 0.682852 CCGTCCTACAACCACCTCAA 59.317 55.000 0.00 0.00 0.00 3.02
666 691 0.035820 TCACCCAATTCACGCCCTAC 60.036 55.000 0.00 0.00 0.00 3.18
674 699 4.037803 CAGACAACAACATCACCCAATTCA 59.962 41.667 0.00 0.00 0.00 2.57
681 706 2.270352 TCCCAGACAACAACATCACC 57.730 50.000 0.00 0.00 0.00 4.02
685 710 3.593442 TTCCTTCCCAGACAACAACAT 57.407 42.857 0.00 0.00 0.00 2.71
688 713 2.661718 GGTTTCCTTCCCAGACAACAA 58.338 47.619 0.00 0.00 0.00 2.83
711 736 2.328473 TCTTGATTTCTCGTGACGCAG 58.672 47.619 0.00 0.00 0.00 5.18
718 743 1.656652 CCCGCATCTTGATTTCTCGT 58.343 50.000 0.00 0.00 0.00 4.18
764 790 0.392595 CTTCCCCTACTTTCCGCCAC 60.393 60.000 0.00 0.00 0.00 5.01
798 824 0.238289 AAGCACGCTGAATTCCAACG 59.762 50.000 2.27 6.65 39.99 4.10
1055 1085 2.698763 TATGGCGCGTCACGGTACA 61.699 57.895 19.15 0.00 43.93 2.90
1106 1136 0.328258 ATAAGGCGGCTCAAACCTGT 59.672 50.000 13.70 0.00 32.92 4.00
1193 1223 1.603802 CAGGTAGCATTATGGCCAACG 59.396 52.381 10.96 0.00 0.00 4.10
1522 1553 9.958180 AAAATAGCAGGGCTAAAATAAAACATT 57.042 25.926 1.63 0.00 44.62 2.71
1524 1555 8.811994 AGAAAATAGCAGGGCTAAAATAAAACA 58.188 29.630 1.63 0.00 44.62 2.83
1527 1558 9.695155 ACTAGAAAATAGCAGGGCTAAAATAAA 57.305 29.630 1.63 0.00 44.62 1.40
1530 1561 6.039829 GCACTAGAAAATAGCAGGGCTAAAAT 59.960 38.462 1.63 0.00 44.62 1.82
1531 1562 5.357032 GCACTAGAAAATAGCAGGGCTAAAA 59.643 40.000 1.63 0.00 44.62 1.52
1532 1563 4.881850 GCACTAGAAAATAGCAGGGCTAAA 59.118 41.667 1.63 0.00 44.62 1.85
1533 1564 4.080582 TGCACTAGAAAATAGCAGGGCTAA 60.081 41.667 1.63 0.00 44.62 3.09
1557 1597 6.954852 CGGCATACAAAAGCAAATAACAAATG 59.045 34.615 0.00 0.00 0.00 2.32
1813 1883 1.529744 GGGGTGGGGGATCTCAAATA 58.470 55.000 0.00 0.00 0.00 1.40
1848 1919 3.364889 TGACTTAAGACAGGTGACACG 57.635 47.619 10.09 0.00 0.00 4.49
2164 2235 3.993658 ATGACCTATGTACTCCCTCCA 57.006 47.619 0.00 0.00 0.00 3.86
2208 2279 3.181450 GGATGTACTATGCAGGCTTTCCT 60.181 47.826 0.00 0.00 45.66 3.36
2209 2280 3.142174 GGATGTACTATGCAGGCTTTCC 58.858 50.000 0.00 0.00 0.00 3.13
2260 2332 5.752955 TGCAGAAATTTAAAAACTGAGTGGC 59.247 36.000 17.57 7.43 0.00 5.01
2268 2340 5.982465 TGTGCCTGCAGAAATTTAAAAAC 57.018 34.783 17.39 0.00 0.00 2.43
2619 2691 1.095600 CCCTCTCGTTGATCTCGTCA 58.904 55.000 9.75 0.00 34.25 4.35
2662 2734 2.125512 ACGGAACAGAGCATCGCC 60.126 61.111 0.00 0.00 42.67 5.54
2685 2757 2.125552 CCGCGGAACAGAGCATCA 60.126 61.111 24.07 0.00 37.82 3.07
2700 2793 1.450312 GAAGGGAGCATCACCACCG 60.450 63.158 0.00 0.00 41.89 4.94
2706 2799 1.918293 ACCACGGAAGGGAGCATCA 60.918 57.895 0.00 0.00 35.60 3.07
2889 2982 1.059006 GGAGCCTCCCAGATGGACAT 61.059 60.000 0.00 0.00 38.61 3.06
2993 3086 1.321743 GACGCACGTCAAGATGATGAC 59.678 52.381 17.70 0.00 44.96 3.06
3014 3107 6.232692 CCAATCCCTTGACAATCAAAAACAT 58.767 36.000 0.00 0.00 35.73 2.71
3024 3117 3.335183 TGGAATACCCAATCCCTTGACAA 59.665 43.478 0.00 0.00 43.29 3.18
3029 3122 3.336694 ACAACTGGAATACCCAATCCCTT 59.663 43.478 0.00 0.00 46.07 3.95
3031 3124 3.382083 ACAACTGGAATACCCAATCCC 57.618 47.619 0.00 0.00 46.07 3.85
3034 3127 4.220602 GCAGAAACAACTGGAATACCCAAT 59.779 41.667 0.00 0.00 46.07 3.16
3035 3128 3.572255 GCAGAAACAACTGGAATACCCAA 59.428 43.478 0.00 0.00 46.07 4.12
3037 3130 3.153919 TGCAGAAACAACTGGAATACCC 58.846 45.455 0.00 0.00 35.47 3.69
3200 3294 9.605275 CTCTCAACAGAATGATCCAGTTAATAA 57.395 33.333 0.00 0.00 39.69 1.40
3201 3295 8.762645 ACTCTCAACAGAATGATCCAGTTAATA 58.237 33.333 0.00 0.00 39.69 0.98
3202 3296 7.551974 CACTCTCAACAGAATGATCCAGTTAAT 59.448 37.037 0.00 0.00 39.69 1.40
3254 3348 8.986477 AGACCATGAAATTTGTAAGCATTAAC 57.014 30.769 0.00 0.00 28.70 2.01
3300 3397 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
3302 3399 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3304 3401 7.412020 GCTTAAGACACTTATTTTGAGACGGAG 60.412 40.741 6.67 0.00 0.00 4.63
3305 3402 6.367969 GCTTAAGACACTTATTTTGAGACGGA 59.632 38.462 6.67 0.00 0.00 4.69
3306 3403 6.369065 AGCTTAAGACACTTATTTTGAGACGG 59.631 38.462 6.67 0.00 0.00 4.79
3307 3404 7.352719 AGCTTAAGACACTTATTTTGAGACG 57.647 36.000 6.67 0.00 0.00 4.18
3346 3443 9.372369 GTGTCTCAATTTTGTATTAGCTCTAGT 57.628 33.333 0.00 0.00 0.00 2.57
3347 3444 9.593134 AGTGTCTCAATTTTGTATTAGCTCTAG 57.407 33.333 0.00 0.00 0.00 2.43
3349 3446 8.854614 AAGTGTCTCAATTTTGTATTAGCTCT 57.145 30.769 0.00 0.00 0.00 4.09
3378 3481 9.765795 GCTCCAGTTATAAGATTGTACAGTATT 57.234 33.333 3.64 3.64 0.00 1.89
3500 3606 5.649395 TCTGTGGATTGGCTTTCAATAGAAG 59.351 40.000 0.00 0.00 45.36 2.85
3522 3629 6.183360 CGAGCTTGCTATCTACGTATATGTCT 60.183 42.308 0.00 0.00 0.00 3.41
3531 3638 1.783711 CAAGCGAGCTTGCTATCTACG 59.216 52.381 28.72 9.52 46.60 3.51
3551 3658 9.588096 ACCAATAATATTTCCCAGATAACCTTC 57.412 33.333 0.00 0.00 0.00 3.46
3625 3737 4.275936 GGCATGTGTAGTTCTTGTTCTGTT 59.724 41.667 0.00 0.00 0.00 3.16
3629 3741 3.146066 TGGGCATGTGTAGTTCTTGTTC 58.854 45.455 0.00 0.00 0.00 3.18
3813 3928 6.413783 TTTTATTGACTTTTCTTGTCCCCC 57.586 37.500 0.00 0.00 33.83 5.40
3814 3929 9.639601 CTAATTTTATTGACTTTTCTTGTCCCC 57.360 33.333 0.00 0.00 33.83 4.81
3873 3991 1.042229 TTGCAAAACTGCCATCTGCT 58.958 45.000 0.00 0.00 42.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.