Multiple sequence alignment - TraesCS1B01G218900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G218900 chr1B 100.000 5203 0 0 1 5203 396356261 396361463 0.000000e+00 9609.0
1 TraesCS1B01G218900 chr1A 95.635 2268 86 11 177 2434 367869974 367872238 0.000000e+00 3627.0
2 TraesCS1B01G218900 chr1A 92.133 2199 101 25 2435 4622 367872329 367874466 0.000000e+00 3037.0
3 TraesCS1B01G218900 chr1A 95.019 261 12 1 4944 5203 367874571 367874831 4.850000e-110 409.0
4 TraesCS1B01G218900 chr1A 95.455 66 3 0 1 66 367852650 367852715 7.130000e-19 106.0
5 TraesCS1B01G218900 chr1D 93.258 2210 95 15 1369 3564 294739417 294741586 0.000000e+00 3206.0
6 TraesCS1B01G218900 chr1D 97.440 1211 27 4 177 1385 294738195 294739403 0.000000e+00 2061.0
7 TraesCS1B01G218900 chr1D 93.182 1012 44 13 3617 4622 294741705 294742697 0.000000e+00 1463.0
8 TraesCS1B01G218900 chr1D 92.857 266 12 3 4944 5203 294742802 294743066 3.800000e-101 379.0
9 TraesCS1B01G218900 chr1D 96.825 63 2 0 1 63 294738007 294738069 7.130000e-19 106.0
10 TraesCS1B01G218900 chr4D 85.542 83 10 2 4825 4905 93837960 93838042 9.280000e-13 86.1
11 TraesCS1B01G218900 chr7B 100.000 33 0 0 150 182 686844680 686844648 1.560000e-05 62.1
12 TraesCS1B01G218900 chr7A 92.308 39 2 1 4825 4862 736062516 736062478 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G218900 chr1B 396356261 396361463 5202 False 9609.000000 9609 100.000000 1 5203 1 chr1B.!!$F1 5202
1 TraesCS1B01G218900 chr1A 367869974 367874831 4857 False 2357.666667 3627 94.262333 177 5203 3 chr1A.!!$F2 5026
2 TraesCS1B01G218900 chr1D 294738007 294743066 5059 False 1443.000000 3206 94.712400 1 5203 5 chr1D.!!$F1 5202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 840 0.250513 GTCCCTCGTCTTCCAATGCT 59.749 55.0 0.00 0.00 0.00 3.79 F
1533 1624 0.906066 ATTGGATGCCTGCATTGCAA 59.094 45.0 13.18 0.00 42.92 4.08 F
2285 2384 0.588737 TGCGTTTAAATGCTGCGTCA 59.411 45.0 27.82 8.55 41.45 4.35 F
3540 3742 0.393820 CTGCAAATGCCTGGTTGGTT 59.606 50.0 2.46 0.00 41.18 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2087 1.112113 GTCTCCCCAGAATAGCACGA 58.888 55.000 0.0 0.0 0.00 4.35 R
3383 3585 1.415659 CTAATCCAGGACCAGCAGAGG 59.584 57.143 0.0 0.0 0.00 3.69 R
3809 4100 1.614317 GCTGGGTTCTGCTACATGGTT 60.614 52.381 0.0 0.0 35.36 3.67 R
4877 5174 0.037590 TCCGCCCCATAATGTATGCC 59.962 55.000 0.0 0.0 34.85 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 99 9.730420 ATATAACTCAAAATACGGCAAAATCAC 57.270 29.630 0.00 0.00 0.00 3.06
121 170 2.228103 GAGGTGATCGTCAGTGTGTACA 59.772 50.000 0.00 0.00 0.00 2.90
122 171 2.030185 AGGTGATCGTCAGTGTGTACAC 60.030 50.000 19.36 19.36 46.77 2.90
140 189 7.127042 GTGTACACGTGAACATTTGATTTGTA 58.873 34.615 25.01 0.00 0.00 2.41
141 190 7.801315 GTGTACACGTGAACATTTGATTTGTAT 59.199 33.333 25.01 0.00 0.00 2.29
142 191 8.012809 TGTACACGTGAACATTTGATTTGTATC 58.987 33.333 25.01 0.00 0.00 2.24
143 192 6.964908 ACACGTGAACATTTGATTTGTATCA 58.035 32.000 25.01 0.00 39.00 2.15
144 193 7.592938 ACACGTGAACATTTGATTTGTATCAT 58.407 30.769 25.01 0.00 40.37 2.45
145 194 7.538334 ACACGTGAACATTTGATTTGTATCATG 59.462 33.333 25.01 0.00 40.37 3.07
146 195 6.527722 ACGTGAACATTTGATTTGTATCATGC 59.472 34.615 0.00 0.00 40.37 4.06
147 196 6.748658 CGTGAACATTTGATTTGTATCATGCT 59.251 34.615 0.00 0.00 40.37 3.79
148 197 7.274033 CGTGAACATTTGATTTGTATCATGCTT 59.726 33.333 0.00 0.00 40.37 3.91
149 198 8.377681 GTGAACATTTGATTTGTATCATGCTTG 58.622 33.333 0.00 0.00 40.37 4.01
150 199 8.089597 TGAACATTTGATTTGTATCATGCTTGT 58.910 29.630 0.00 0.00 40.37 3.16
151 200 8.836268 AACATTTGATTTGTATCATGCTTGTT 57.164 26.923 0.00 0.00 40.37 2.83
152 201 8.836268 ACATTTGATTTGTATCATGCTTGTTT 57.164 26.923 0.00 0.00 40.37 2.83
153 202 9.275398 ACATTTGATTTGTATCATGCTTGTTTT 57.725 25.926 0.00 0.00 40.37 2.43
158 207 9.288124 TGATTTGTATCATGCTTGTTTTTATCG 57.712 29.630 0.00 0.00 35.87 2.92
159 208 8.633075 ATTTGTATCATGCTTGTTTTTATCGG 57.367 30.769 0.00 0.00 0.00 4.18
160 209 6.993786 TGTATCATGCTTGTTTTTATCGGA 57.006 33.333 0.00 0.00 0.00 4.55
161 210 7.566760 TGTATCATGCTTGTTTTTATCGGAT 57.433 32.000 0.00 0.00 0.00 4.18
162 211 7.416817 TGTATCATGCTTGTTTTTATCGGATG 58.583 34.615 0.00 0.00 0.00 3.51
163 212 5.895636 TCATGCTTGTTTTTATCGGATGT 57.104 34.783 0.00 0.00 0.00 3.06
164 213 5.879237 TCATGCTTGTTTTTATCGGATGTC 58.121 37.500 0.00 0.00 0.00 3.06
165 214 4.695217 TGCTTGTTTTTATCGGATGTCC 57.305 40.909 0.00 0.00 0.00 4.02
166 215 3.442273 TGCTTGTTTTTATCGGATGTCCC 59.558 43.478 0.00 0.00 0.00 4.46
167 216 3.181490 GCTTGTTTTTATCGGATGTCCCC 60.181 47.826 0.00 0.00 0.00 4.81
414 464 1.681264 GCTTGCTAGTCCTCTCTCTCC 59.319 57.143 0.00 0.00 0.00 3.71
468 520 0.965866 TTCCCTGATCTGCTCGTCGT 60.966 55.000 0.00 0.00 0.00 4.34
786 840 0.250513 GTCCCTCGTCTTCCAATGCT 59.749 55.000 0.00 0.00 0.00 3.79
787 841 1.480954 GTCCCTCGTCTTCCAATGCTA 59.519 52.381 0.00 0.00 0.00 3.49
886 946 1.633774 TGGTGTTTGTGTTGGTTGGT 58.366 45.000 0.00 0.00 0.00 3.67
915 975 2.438434 ATTTGGCGAGGCGAAGGG 60.438 61.111 5.57 0.00 0.00 3.95
923 983 2.204090 AGGCGAAGGGAAGGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
1191 1251 1.898863 ATAACCTGCTGGAGGACCAT 58.101 50.000 22.89 8.47 46.33 3.55
1231 1291 1.296392 CTGAGCACAACGGATCCCA 59.704 57.895 6.06 0.00 0.00 4.37
1337 1397 5.672194 ACCATCTGAAGGGTAATACCTCAAT 59.328 40.000 9.58 1.31 37.93 2.57
1338 1398 6.160459 ACCATCTGAAGGGTAATACCTCAATT 59.840 38.462 9.58 0.00 37.93 2.32
1357 1417 3.313524 TTGCTGCGGCTCTCCTGA 61.314 61.111 20.27 0.00 39.59 3.86
1410 1501 5.343307 TCAAATGTCAGTCTAGCTATGCA 57.657 39.130 0.00 0.00 0.00 3.96
1411 1502 5.111989 TCAAATGTCAGTCTAGCTATGCAC 58.888 41.667 0.00 0.00 0.00 4.57
1413 1504 3.790152 TGTCAGTCTAGCTATGCACTG 57.210 47.619 16.35 16.35 38.09 3.66
1479 1570 5.093457 GTCTGTGATTGATGCTGATTGTTG 58.907 41.667 0.00 0.00 0.00 3.33
1495 1586 5.754406 TGATTGTTGTCAGCCATTTTTCTTG 59.246 36.000 0.00 0.00 0.00 3.02
1503 1594 2.841881 AGCCATTTTTCTTGCCATGGAT 59.158 40.909 18.40 0.00 38.88 3.41
1533 1624 0.906066 ATTGGATGCCTGCATTGCAA 59.094 45.000 13.18 0.00 42.92 4.08
1593 1684 9.372541 CAAACAAGTGCAATTTAAATGATGTTC 57.627 29.630 0.39 0.00 0.00 3.18
1595 1686 8.524870 ACAAGTGCAATTTAAATGATGTTCTC 57.475 30.769 0.39 0.00 0.00 2.87
1599 1690 7.752239 AGTGCAATTTAAATGATGTTCTCTTCG 59.248 33.333 0.39 0.00 0.00 3.79
1653 1751 9.855021 CGATCCTTGGTTGATTTATTTTACTTT 57.145 29.630 0.00 0.00 0.00 2.66
1774 1873 5.779241 TGTCAATCTCCATTAGTTCCCTT 57.221 39.130 0.00 0.00 0.00 3.95
1775 1874 5.500234 TGTCAATCTCCATTAGTTCCCTTG 58.500 41.667 0.00 0.00 0.00 3.61
1988 2087 1.963515 GTTGCAAATGTTGGGGACTCT 59.036 47.619 0.00 0.00 0.00 3.24
2173 2272 7.284489 TGTGAAGGGTATTATTCAGGTAAATGC 59.716 37.037 0.00 0.00 36.16 3.56
2174 2273 7.502561 GTGAAGGGTATTATTCAGGTAAATGCT 59.497 37.037 0.00 0.00 36.16 3.79
2175 2274 8.058847 TGAAGGGTATTATTCAGGTAAATGCTT 58.941 33.333 0.00 0.00 31.93 3.91
2184 2283 4.326826 TCAGGTAAATGCTTGGAGTTCAG 58.673 43.478 0.00 0.00 0.00 3.02
2215 2314 2.812591 CTGGCATGTGATCCATAGCTTC 59.187 50.000 0.00 0.00 31.97 3.86
2231 2330 6.642950 CCATAGCTTCCTTTATACAGTCTTCG 59.357 42.308 0.00 0.00 0.00 3.79
2243 2342 3.362706 ACAGTCTTCGGACATTAGGCTA 58.637 45.455 0.00 0.00 46.67 3.93
2281 2380 3.547468 CCATAACTGCGTTTAAATGCTGC 59.453 43.478 28.86 15.24 41.75 5.25
2285 2384 0.588737 TGCGTTTAAATGCTGCGTCA 59.411 45.000 27.82 8.55 41.45 4.35
2286 2385 1.198867 TGCGTTTAAATGCTGCGTCAT 59.801 42.857 27.82 0.00 41.45 3.06
2287 2386 1.578915 GCGTTTAAATGCTGCGTCATG 59.421 47.619 22.42 0.00 37.92 3.07
2288 2387 2.176369 CGTTTAAATGCTGCGTCATGG 58.824 47.619 0.00 0.00 0.00 3.66
2296 2395 0.740868 GCTGCGTCATGGTGCTTCTA 60.741 55.000 10.68 0.00 0.00 2.10
2305 2404 6.423905 GCGTCATGGTGCTTCTATTAGAATTA 59.576 38.462 6.59 0.00 33.13 1.40
2346 2445 8.218338 ACATTAGGCAAATTCTCAGTTATCAG 57.782 34.615 0.00 0.00 0.00 2.90
2352 2451 8.381636 AGGCAAATTCTCAGTTATCAGCTATAT 58.618 33.333 0.00 0.00 0.00 0.86
2438 2627 7.281774 TCCGAGTCTTGTAATTAGGTACAGTAG 59.718 40.741 0.00 0.00 35.47 2.57
2502 2691 2.036958 TGATGTCGATCCCGCAAATT 57.963 45.000 0.00 0.00 35.37 1.82
2521 2710 8.586273 CGCAAATTAATTATTATGTATGCCTGC 58.414 33.333 0.01 2.27 0.00 4.85
2549 2738 6.711277 TCTTAAAACAGATATGAGGTGTGCT 58.289 36.000 0.00 0.00 0.00 4.40
2550 2739 7.168219 TCTTAAAACAGATATGAGGTGTGCTT 58.832 34.615 0.00 0.00 0.00 3.91
2551 2740 8.318412 TCTTAAAACAGATATGAGGTGTGCTTA 58.682 33.333 0.00 0.00 0.00 3.09
2552 2741 9.113838 CTTAAAACAGATATGAGGTGTGCTTAT 57.886 33.333 0.00 0.00 0.00 1.73
2553 2742 7.559590 AAAACAGATATGAGGTGTGCTTATC 57.440 36.000 0.00 0.00 0.00 1.75
2554 2743 5.876651 ACAGATATGAGGTGTGCTTATCA 57.123 39.130 0.00 0.00 0.00 2.15
2555 2744 6.430962 ACAGATATGAGGTGTGCTTATCAT 57.569 37.500 0.00 0.00 36.42 2.45
2556 2745 6.228995 ACAGATATGAGGTGTGCTTATCATG 58.771 40.000 0.00 0.00 34.38 3.07
2565 2762 7.657354 TGAGGTGTGCTTATCATGTACAATATC 59.343 37.037 0.00 0.00 32.34 1.63
2592 2789 7.002276 TCATGTGCATTTCCTAGATGAATCAT 58.998 34.615 0.00 0.00 0.00 2.45
2788 2987 1.142060 TCGGCTTCCAGAAACTTTCCA 59.858 47.619 0.00 0.00 0.00 3.53
2873 3072 5.270893 TCATCATTTTTGCATCTGATGGG 57.729 39.130 18.60 0.00 43.23 4.00
3017 3216 4.173036 TCATGCATTCTTTTTCCGAACC 57.827 40.909 0.00 0.00 0.00 3.62
3033 3232 5.055812 TCCGAACCACAAAGTACGTATTTT 58.944 37.500 9.99 9.99 0.00 1.82
3039 3238 6.203647 ACCACAAAGTACGTATTTTTGCTTC 58.796 36.000 23.94 1.84 35.71 3.86
3089 3288 3.211045 TGTTTCTGTTGAGGTAAGTGGC 58.789 45.455 0.00 0.00 0.00 5.01
3090 3289 3.118038 TGTTTCTGTTGAGGTAAGTGGCT 60.118 43.478 0.00 0.00 0.00 4.75
3148 3348 8.986991 ACCAGATATGAACATCTTTAGAACTCT 58.013 33.333 0.00 0.00 32.83 3.24
3184 3384 8.840833 TGTTAACATGTAATAGTTCTGCAAGA 57.159 30.769 3.59 0.00 44.68 3.02
3251 3453 1.518056 CTGCCACGATGGTTGCAACT 61.518 55.000 27.64 10.40 43.34 3.16
3287 3489 6.250819 CACCAAGTTATCGATTTTGTAGCAG 58.749 40.000 1.71 0.00 0.00 4.24
3383 3585 7.229907 TGGTTTAGTCCCTAGAATTTTGTGTTC 59.770 37.037 0.00 0.00 0.00 3.18
3390 3592 5.006386 CCTAGAATTTTGTGTTCCTCTGCT 58.994 41.667 0.00 0.00 0.00 4.24
3414 3616 3.482156 CCTGGATTAGGTCATGTCTGG 57.518 52.381 0.00 0.00 42.00 3.86
3469 3671 7.232118 TCTATGTCTCTCTTTTCATGTCACA 57.768 36.000 0.00 0.00 0.00 3.58
3470 3672 7.093354 TCTATGTCTCTCTTTTCATGTCACAC 58.907 38.462 0.00 0.00 0.00 3.82
3471 3673 5.282055 TGTCTCTCTTTTCATGTCACACT 57.718 39.130 0.00 0.00 0.00 3.55
3472 3674 6.405278 TGTCTCTCTTTTCATGTCACACTA 57.595 37.500 0.00 0.00 0.00 2.74
3473 3675 6.997655 TGTCTCTCTTTTCATGTCACACTAT 58.002 36.000 0.00 0.00 0.00 2.12
3474 3676 7.445121 TGTCTCTCTTTTCATGTCACACTATT 58.555 34.615 0.00 0.00 0.00 1.73
3475 3677 7.386025 TGTCTCTCTTTTCATGTCACACTATTG 59.614 37.037 0.00 0.00 0.00 1.90
3476 3678 6.875726 TCTCTCTTTTCATGTCACACTATTGG 59.124 38.462 0.00 0.00 0.00 3.16
3477 3679 6.768483 TCTCTTTTCATGTCACACTATTGGA 58.232 36.000 0.00 0.00 0.00 3.53
3478 3680 7.223584 TCTCTTTTCATGTCACACTATTGGAA 58.776 34.615 0.00 0.00 0.00 3.53
3479 3681 7.884877 TCTCTTTTCATGTCACACTATTGGAAT 59.115 33.333 0.00 0.00 0.00 3.01
3480 3682 8.044060 TCTTTTCATGTCACACTATTGGAATC 57.956 34.615 0.00 0.00 0.00 2.52
3481 3683 6.757897 TTTCATGTCACACTATTGGAATCC 57.242 37.500 0.00 0.00 0.00 3.01
3482 3684 4.780815 TCATGTCACACTATTGGAATCCC 58.219 43.478 0.00 0.00 0.00 3.85
3483 3685 4.474651 TCATGTCACACTATTGGAATCCCT 59.525 41.667 0.00 0.00 0.00 4.20
3484 3686 5.665360 TCATGTCACACTATTGGAATCCCTA 59.335 40.000 0.00 0.00 0.00 3.53
3485 3687 5.614324 TGTCACACTATTGGAATCCCTAG 57.386 43.478 0.00 0.59 0.00 3.02
3505 3707 4.273148 AGTCGCTGAATTGAAGGTTACT 57.727 40.909 0.00 0.00 0.00 2.24
3540 3742 0.393820 CTGCAAATGCCTGGTTGGTT 59.606 50.000 2.46 0.00 41.18 3.67
3564 3766 9.937175 GTTGCTTATTGAGGAGATATTTTGTAC 57.063 33.333 0.00 0.00 0.00 2.90
3565 3767 9.905713 TTGCTTATTGAGGAGATATTTTGTACT 57.094 29.630 0.00 0.00 0.00 2.73
3566 3768 9.547753 TGCTTATTGAGGAGATATTTTGTACTC 57.452 33.333 0.00 0.00 0.00 2.59
3567 3769 8.994170 GCTTATTGAGGAGATATTTTGTACTCC 58.006 37.037 0.00 0.00 46.28 3.85
3568 3770 9.495572 CTTATTGAGGAGATATTTTGTACTCCC 57.504 37.037 0.00 0.00 46.88 4.30
3569 3771 7.698163 ATTGAGGAGATATTTTGTACTCCCT 57.302 36.000 0.00 0.00 46.88 4.20
3570 3772 6.732896 TGAGGAGATATTTTGTACTCCCTC 57.267 41.667 0.00 0.00 46.88 4.30
3571 3773 5.602978 TGAGGAGATATTTTGTACTCCCTCC 59.397 44.000 0.00 0.00 46.88 4.30
3572 3774 4.589374 AGGAGATATTTTGTACTCCCTCCG 59.411 45.833 0.00 0.00 46.88 4.63
3573 3775 4.344390 GGAGATATTTTGTACTCCCTCCGT 59.656 45.833 0.00 0.00 41.89 4.69
3574 3776 5.163332 GGAGATATTTTGTACTCCCTCCGTT 60.163 44.000 0.00 0.00 41.89 4.44
3575 3777 5.915175 AGATATTTTGTACTCCCTCCGTTC 58.085 41.667 0.00 0.00 0.00 3.95
3576 3778 2.845363 TTTTGTACTCCCTCCGTTCC 57.155 50.000 0.00 0.00 0.00 3.62
3577 3779 2.019807 TTTGTACTCCCTCCGTTCCT 57.980 50.000 0.00 0.00 0.00 3.36
3578 3780 2.019807 TTGTACTCCCTCCGTTCCTT 57.980 50.000 0.00 0.00 0.00 3.36
3579 3781 2.019807 TGTACTCCCTCCGTTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
3580 3782 3.173953 TGTACTCCCTCCGTTCCTTTA 57.826 47.619 0.00 0.00 0.00 1.85
3581 3783 3.716431 TGTACTCCCTCCGTTCCTTTAT 58.284 45.455 0.00 0.00 0.00 1.40
3582 3784 4.870636 TGTACTCCCTCCGTTCCTTTATA 58.129 43.478 0.00 0.00 0.00 0.98
3583 3785 4.891756 TGTACTCCCTCCGTTCCTTTATAG 59.108 45.833 0.00 0.00 0.00 1.31
3584 3786 3.991683 ACTCCCTCCGTTCCTTTATAGT 58.008 45.455 0.00 0.00 0.00 2.12
3585 3787 5.134725 ACTCCCTCCGTTCCTTTATAGTA 57.865 43.478 0.00 0.00 0.00 1.82
3605 3807 8.704849 ATAGTAGCAGTTATCATCTTCAGAGT 57.295 34.615 0.00 0.00 0.00 3.24
3608 3810 6.291648 AGCAGTTATCATCTTCAGAGTTCA 57.708 37.500 0.00 0.00 0.00 3.18
3609 3811 6.339730 AGCAGTTATCATCTTCAGAGTTCAG 58.660 40.000 0.00 0.00 0.00 3.02
3610 3812 6.154192 AGCAGTTATCATCTTCAGAGTTCAGA 59.846 38.462 0.00 0.00 0.00 3.27
3612 3814 6.756074 CAGTTATCATCTTCAGAGTTCAGACC 59.244 42.308 0.00 0.00 0.00 3.85
3614 3816 5.596836 ATCATCTTCAGAGTTCAGACCTC 57.403 43.478 0.00 0.00 0.00 3.85
3617 3819 3.850752 TCTTCAGAGTTCAGACCTCCTT 58.149 45.455 0.00 0.00 0.00 3.36
3618 3820 4.227197 TCTTCAGAGTTCAGACCTCCTTT 58.773 43.478 0.00 0.00 0.00 3.11
3619 3821 4.656112 TCTTCAGAGTTCAGACCTCCTTTT 59.344 41.667 0.00 0.00 0.00 2.27
3620 3822 4.608948 TCAGAGTTCAGACCTCCTTTTC 57.391 45.455 0.00 0.00 0.00 2.29
3621 3823 4.227197 TCAGAGTTCAGACCTCCTTTTCT 58.773 43.478 0.00 0.00 0.00 2.52
3622 3824 4.656112 TCAGAGTTCAGACCTCCTTTTCTT 59.344 41.667 0.00 0.00 0.00 2.52
3624 3826 5.825151 CAGAGTTCAGACCTCCTTTTCTTTT 59.175 40.000 0.00 0.00 0.00 2.27
3625 3827 6.017523 CAGAGTTCAGACCTCCTTTTCTTTTC 60.018 42.308 0.00 0.00 0.00 2.29
3626 3828 5.133941 AGTTCAGACCTCCTTTTCTTTTCC 58.866 41.667 0.00 0.00 0.00 3.13
3627 3829 4.788925 TCAGACCTCCTTTTCTTTTCCA 57.211 40.909 0.00 0.00 0.00 3.53
3666 3955 7.122138 AGATCTCTTCAACATCTGCATTCTA 57.878 36.000 0.00 0.00 0.00 2.10
3705 3995 6.893958 ATGAGCTACTTTACAACTGATTCG 57.106 37.500 0.00 0.00 0.00 3.34
3706 3996 5.168569 TGAGCTACTTTACAACTGATTCGG 58.831 41.667 0.00 0.00 0.00 4.30
3743 4034 2.620251 TCCTGAACTATGGCGATTGG 57.380 50.000 0.00 0.00 0.00 3.16
3773 4064 4.700213 ACCAACTAACCAATGTAGACATGC 59.300 41.667 0.00 0.00 36.56 4.06
3809 4100 5.931146 ACTTCACATTTCAGTTTGCAAACAA 59.069 32.000 36.46 25.14 41.30 2.83
3822 4113 2.954989 TGCAAACAAACCATGTAGCAGA 59.045 40.909 5.02 0.00 43.82 4.26
3884 4176 8.880991 ATTCTACTAGAGTCTTGTGTTCCTTA 57.119 34.615 16.27 0.00 0.00 2.69
3894 4186 8.463930 AGTCTTGTGTTCCTTAATTCATTTCA 57.536 30.769 0.00 0.00 0.00 2.69
4079 4371 6.017109 GCCACTTTCATGATGATATAACGGTT 60.017 38.462 0.00 0.00 0.00 4.44
4082 4374 8.064222 CACTTTCATGATGATATAACGGTTGTC 58.936 37.037 3.07 0.16 0.00 3.18
4114 4406 2.221169 TGATTCGAATGCCATAGCCAC 58.779 47.619 16.96 0.00 38.69 5.01
4115 4407 2.158769 TGATTCGAATGCCATAGCCACT 60.159 45.455 16.96 0.00 38.69 4.00
4118 4410 0.940126 CGAATGCCATAGCCACTGAC 59.060 55.000 0.00 0.00 38.69 3.51
4126 4418 1.264749 ATAGCCACTGACGCCTGGAA 61.265 55.000 0.00 0.00 0.00 3.53
4130 4422 4.003788 ACTGACGCCTGGAACCGG 62.004 66.667 0.00 0.00 0.00 5.28
4154 4446 0.034059 CAGTTTCTCTGCGAGGTGGT 59.966 55.000 5.87 0.00 37.36 4.16
4205 4497 1.141858 CCATTCTCAGGTTCCTAGCCC 59.858 57.143 0.00 0.00 0.00 5.19
4208 4500 1.867363 TCTCAGGTTCCTAGCCCTTC 58.133 55.000 0.00 0.00 0.00 3.46
4218 4510 1.280457 CTAGCCCTTCCACTGGAGTT 58.720 55.000 0.00 0.00 31.21 3.01
4233 4525 4.583489 ACTGGAGTTAAGAAGACACGAAGA 59.417 41.667 0.00 0.00 0.00 2.87
4243 4535 3.113260 AGACACGAAGACCAGAAAAGG 57.887 47.619 0.00 0.00 0.00 3.11
4244 4536 2.143925 GACACGAAGACCAGAAAAGGG 58.856 52.381 0.00 0.00 0.00 3.95
4246 4538 2.171870 ACACGAAGACCAGAAAAGGGAA 59.828 45.455 0.00 0.00 0.00 3.97
4249 4541 2.038557 CGAAGACCAGAAAAGGGAAGGA 59.961 50.000 0.00 0.00 0.00 3.36
4250 4542 3.496160 CGAAGACCAGAAAAGGGAAGGAA 60.496 47.826 0.00 0.00 0.00 3.36
4251 4543 4.470602 GAAGACCAGAAAAGGGAAGGAAA 58.529 43.478 0.00 0.00 0.00 3.13
4362 4657 6.127793 ACCTGGTTACTAGTGTACTGATAGG 58.872 44.000 5.39 11.62 0.00 2.57
4476 4771 2.616256 CCCTCACAAAGTGCTGCATCTA 60.616 50.000 5.27 0.00 32.98 1.98
4477 4772 3.276857 CCTCACAAAGTGCTGCATCTAT 58.723 45.455 5.27 0.00 32.98 1.98
4493 4788 5.115480 GCATCTATAGGCTGGCTAATCTTC 58.885 45.833 15.28 0.35 0.00 2.87
4495 4790 3.764434 TCTATAGGCTGGCTAATCTTCGG 59.236 47.826 15.28 1.63 0.00 4.30
4563 4858 6.006072 GATCAACACGATCTACAACGTTAC 57.994 41.667 0.00 0.00 46.16 2.50
4577 4872 4.506654 ACAACGTTACTCTGTTGACATGTC 59.493 41.667 19.27 19.27 46.45 3.06
4578 4873 3.305964 ACGTTACTCTGTTGACATGTCG 58.694 45.455 20.54 7.89 0.00 4.35
4579 4874 3.004002 ACGTTACTCTGTTGACATGTCGA 59.996 43.478 20.54 16.51 0.00 4.20
4580 4875 4.166523 CGTTACTCTGTTGACATGTCGAT 58.833 43.478 18.76 5.30 0.00 3.59
4581 4876 4.030641 CGTTACTCTGTTGACATGTCGATG 59.969 45.833 18.76 14.20 35.49 3.84
4582 4877 2.341257 ACTCTGTTGACATGTCGATGC 58.659 47.619 18.76 7.81 32.14 3.91
4609 4906 5.764487 TGTGAACTTGCACATATTGAACA 57.236 34.783 0.00 0.00 43.35 3.18
4611 4908 4.618489 GTGAACTTGCACATATTGAACAGC 59.382 41.667 0.00 0.00 38.63 4.40
4615 4912 4.394300 ACTTGCACATATTGAACAGCTCTC 59.606 41.667 0.00 0.00 0.00 3.20
4622 4919 2.140065 TTGAACAGCTCTCGTCACAG 57.860 50.000 0.00 0.00 0.00 3.66
4623 4920 0.315251 TGAACAGCTCTCGTCACAGG 59.685 55.000 0.00 0.00 0.00 4.00
4625 4922 0.827925 AACAGCTCTCGTCACAGGGA 60.828 55.000 0.00 0.00 0.00 4.20
4626 4923 0.827925 ACAGCTCTCGTCACAGGGAA 60.828 55.000 0.00 0.00 0.00 3.97
4642 4939 2.496899 GGAACCTGATGAAGAAGCCA 57.503 50.000 0.00 0.00 0.00 4.75
4643 4940 3.010200 GGAACCTGATGAAGAAGCCAT 57.990 47.619 0.00 0.00 0.00 4.40
4644 4941 3.359950 GGAACCTGATGAAGAAGCCATT 58.640 45.455 0.00 0.00 0.00 3.16
4645 4942 3.766051 GGAACCTGATGAAGAAGCCATTT 59.234 43.478 0.00 0.00 0.00 2.32
4646 4943 4.381292 GGAACCTGATGAAGAAGCCATTTG 60.381 45.833 0.00 0.00 0.00 2.32
4647 4944 3.771216 ACCTGATGAAGAAGCCATTTGT 58.229 40.909 0.00 0.00 0.00 2.83
4648 4945 3.508793 ACCTGATGAAGAAGCCATTTGTG 59.491 43.478 0.00 0.00 0.00 3.33
4649 4946 3.760151 CCTGATGAAGAAGCCATTTGTGA 59.240 43.478 0.00 0.00 0.00 3.58
4650 4947 4.401519 CCTGATGAAGAAGCCATTTGTGAT 59.598 41.667 0.00 0.00 0.00 3.06
4651 4948 5.319140 TGATGAAGAAGCCATTTGTGATG 57.681 39.130 0.00 0.00 0.00 3.07
4652 4949 4.158949 TGATGAAGAAGCCATTTGTGATGG 59.841 41.667 0.68 0.68 41.99 3.51
4668 4965 4.102113 GGCAATGCCTTGTGGAGT 57.898 55.556 18.47 0.00 46.69 3.85
4669 4966 2.354902 GGCAATGCCTTGTGGAGTT 58.645 52.632 18.47 0.00 46.69 3.01
4670 4967 0.244721 GGCAATGCCTTGTGGAGTTC 59.755 55.000 18.47 0.00 46.69 3.01
4671 4968 0.109597 GCAATGCCTTGTGGAGTTCG 60.110 55.000 3.59 0.00 34.69 3.95
4672 4969 0.109597 CAATGCCTTGTGGAGTTCGC 60.110 55.000 0.00 0.00 34.57 4.70
4673 4970 0.537143 AATGCCTTGTGGAGTTCGCA 60.537 50.000 0.00 0.00 34.57 5.10
4674 4971 0.322816 ATGCCTTGTGGAGTTCGCAT 60.323 50.000 0.00 0.00 35.59 4.73
4675 4972 0.955428 TGCCTTGTGGAGTTCGCATC 60.955 55.000 0.00 0.00 35.59 3.91
4676 4973 1.970917 GCCTTGTGGAGTTCGCATCG 61.971 60.000 0.00 0.00 35.59 3.84
4677 4974 0.389817 CCTTGTGGAGTTCGCATCGA 60.390 55.000 0.00 0.00 35.59 3.59
4678 4975 1.428448 CTTGTGGAGTTCGCATCGAA 58.572 50.000 0.00 0.00 43.75 3.71
4679 4976 1.391485 CTTGTGGAGTTCGCATCGAAG 59.609 52.381 1.59 0.00 46.54 3.79
4680 4977 1.014044 TGTGGAGTTCGCATCGAAGC 61.014 55.000 1.73 1.73 46.54 3.86
4681 4978 0.737715 GTGGAGTTCGCATCGAAGCT 60.738 55.000 11.27 3.41 46.54 3.74
4682 4979 0.737367 TGGAGTTCGCATCGAAGCTG 60.737 55.000 11.27 4.72 46.54 4.24
4683 4980 0.458543 GGAGTTCGCATCGAAGCTGA 60.459 55.000 11.27 7.04 46.54 4.26
4684 4981 0.919981 GAGTTCGCATCGAAGCTGAG 59.080 55.000 11.27 0.00 46.54 3.35
4685 4982 1.080995 AGTTCGCATCGAAGCTGAGC 61.081 55.000 11.27 11.20 46.54 4.26
4686 4983 1.811266 TTCGCATCGAAGCTGAGCC 60.811 57.895 11.27 0.00 41.05 4.70
4687 4984 3.267860 CGCATCGAAGCTGAGCCC 61.268 66.667 11.27 0.00 0.00 5.19
4688 4985 2.899339 GCATCGAAGCTGAGCCCC 60.899 66.667 5.18 0.00 0.00 5.80
4689 4986 2.906458 CATCGAAGCTGAGCCCCT 59.094 61.111 0.00 0.00 0.00 4.79
4690 4987 1.227497 CATCGAAGCTGAGCCCCTC 60.227 63.158 0.00 0.00 0.00 4.30
4691 4988 1.687146 ATCGAAGCTGAGCCCCTCA 60.687 57.895 0.00 0.00 38.25 3.86
4692 4989 1.053264 ATCGAAGCTGAGCCCCTCAT 61.053 55.000 0.00 0.00 39.92 2.90
4693 4990 1.222936 CGAAGCTGAGCCCCTCATT 59.777 57.895 0.00 0.00 39.92 2.57
4694 4991 0.393537 CGAAGCTGAGCCCCTCATTT 60.394 55.000 0.00 0.00 39.92 2.32
4695 4992 1.844687 GAAGCTGAGCCCCTCATTTT 58.155 50.000 0.00 0.00 39.92 1.82
4696 4993 2.680805 CGAAGCTGAGCCCCTCATTTTA 60.681 50.000 0.00 0.00 39.92 1.52
4697 4994 3.356290 GAAGCTGAGCCCCTCATTTTAA 58.644 45.455 0.00 0.00 39.92 1.52
4698 4995 3.677156 AGCTGAGCCCCTCATTTTAAT 57.323 42.857 0.00 0.00 39.92 1.40
4699 4996 3.986435 AGCTGAGCCCCTCATTTTAATT 58.014 40.909 0.00 0.00 39.92 1.40
4700 4997 4.356436 AGCTGAGCCCCTCATTTTAATTT 58.644 39.130 0.00 0.00 39.92 1.82
4701 4998 4.403752 AGCTGAGCCCCTCATTTTAATTTC 59.596 41.667 0.00 0.00 39.92 2.17
4702 4999 4.403752 GCTGAGCCCCTCATTTTAATTTCT 59.596 41.667 0.00 0.00 39.92 2.52
4703 5000 5.105187 GCTGAGCCCCTCATTTTAATTTCTT 60.105 40.000 0.00 0.00 39.92 2.52
4704 5001 6.575056 GCTGAGCCCCTCATTTTAATTTCTTT 60.575 38.462 0.00 0.00 39.92 2.52
4705 5002 7.363793 GCTGAGCCCCTCATTTTAATTTCTTTA 60.364 37.037 0.00 0.00 39.92 1.85
4706 5003 8.608185 TGAGCCCCTCATTTTAATTTCTTTAT 57.392 30.769 0.00 0.00 35.39 1.40
4707 5004 9.045745 TGAGCCCCTCATTTTAATTTCTTTATT 57.954 29.630 0.00 0.00 35.39 1.40
4710 5007 9.244799 GCCCCTCATTTTAATTTCTTTATTACG 57.755 33.333 0.00 0.00 0.00 3.18
4724 5021 9.737427 TTTCTTTATTACGTGCAATTTGAAAGA 57.263 25.926 0.00 1.24 0.00 2.52
4725 5022 9.737427 TTCTTTATTACGTGCAATTTGAAAGAA 57.263 25.926 14.67 14.67 37.79 2.52
4726 5023 9.737427 TCTTTATTACGTGCAATTTGAAAGAAA 57.263 25.926 0.00 0.00 29.87 2.52
4727 5024 9.777843 CTTTATTACGTGCAATTTGAAAGAAAC 57.222 29.630 0.00 0.00 0.00 2.78
4728 5025 9.522804 TTTATTACGTGCAATTTGAAAGAAACT 57.477 25.926 0.00 0.00 0.00 2.66
4729 5026 9.522804 TTATTACGTGCAATTTGAAAGAAACTT 57.477 25.926 0.00 0.00 0.00 2.66
4730 5027 5.949233 ACGTGCAATTTGAAAGAAACTTC 57.051 34.783 0.00 0.00 0.00 3.01
4731 5028 4.803613 ACGTGCAATTTGAAAGAAACTTCC 59.196 37.500 0.00 0.00 0.00 3.46
4732 5029 4.803088 CGTGCAATTTGAAAGAAACTTCCA 59.197 37.500 0.00 0.00 0.00 3.53
4733 5030 5.290643 CGTGCAATTTGAAAGAAACTTCCAA 59.709 36.000 0.00 0.00 0.00 3.53
4734 5031 6.183360 CGTGCAATTTGAAAGAAACTTCCAAA 60.183 34.615 0.00 0.00 0.00 3.28
4735 5032 7.182089 GTGCAATTTGAAAGAAACTTCCAAAG 58.818 34.615 0.00 0.00 0.00 2.77
4736 5033 6.878389 TGCAATTTGAAAGAAACTTCCAAAGT 59.122 30.769 0.00 0.00 45.46 2.66
4756 5053 7.326063 CCAAAGTTTTAATCAAGGTAGAAAGCG 59.674 37.037 0.00 0.00 0.00 4.68
4768 5065 5.428253 AGGTAGAAAGCGAGCATGATAAAA 58.572 37.500 0.00 0.00 0.00 1.52
4780 5077 7.698130 GCGAGCATGATAAAACTAAGATTTTGT 59.302 33.333 0.00 0.00 33.80 2.83
4812 5109 0.313043 CTGTTGCCAAGAACAGCCAG 59.687 55.000 2.12 0.00 44.70 4.85
4828 5125 0.549950 CCAGATCTGGTGCCATCCTT 59.450 55.000 30.55 0.00 45.53 3.36
4829 5126 1.476471 CCAGATCTGGTGCCATCCTTC 60.476 57.143 30.55 0.00 45.53 3.46
4830 5127 0.842635 AGATCTGGTGCCATCCTTCC 59.157 55.000 0.00 0.00 0.00 3.46
4831 5128 0.533755 GATCTGGTGCCATCCTTCCG 60.534 60.000 0.00 0.00 0.00 4.30
4832 5129 1.274703 ATCTGGTGCCATCCTTCCGT 61.275 55.000 0.00 0.00 0.00 4.69
4833 5130 1.450312 CTGGTGCCATCCTTCCGTC 60.450 63.158 0.00 0.00 0.00 4.79
4834 5131 2.124695 GGTGCCATCCTTCCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
4835 5132 2.124695 GTGCCATCCTTCCGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
4836 5133 2.609299 TGCCATCCTTCCGTCCCA 60.609 61.111 0.00 0.00 0.00 4.37
4837 5134 2.000701 TGCCATCCTTCCGTCCCAT 61.001 57.895 0.00 0.00 0.00 4.00
4838 5135 0.692756 TGCCATCCTTCCGTCCCATA 60.693 55.000 0.00 0.00 0.00 2.74
4839 5136 0.472471 GCCATCCTTCCGTCCCATAA 59.528 55.000 0.00 0.00 0.00 1.90
4840 5137 1.073923 GCCATCCTTCCGTCCCATAAT 59.926 52.381 0.00 0.00 0.00 1.28
4841 5138 2.783135 CCATCCTTCCGTCCCATAATG 58.217 52.381 0.00 0.00 0.00 1.90
4842 5139 2.106511 CCATCCTTCCGTCCCATAATGT 59.893 50.000 0.00 0.00 0.00 2.71
4843 5140 3.326588 CCATCCTTCCGTCCCATAATGTA 59.673 47.826 0.00 0.00 0.00 2.29
4844 5141 4.202419 CCATCCTTCCGTCCCATAATGTAA 60.202 45.833 0.00 0.00 0.00 2.41
4845 5142 4.682778 TCCTTCCGTCCCATAATGTAAG 57.317 45.455 0.00 0.00 0.00 2.34
4846 5143 4.291792 TCCTTCCGTCCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
4847 5144 4.100498 TCCTTCCGTCCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
4848 5145 4.141801 CCTTCCGTCCCATAATGTAAGACA 60.142 45.833 0.00 0.00 0.00 3.41
4849 5146 5.454755 CCTTCCGTCCCATAATGTAAGACAT 60.455 44.000 0.00 0.00 41.31 3.06
4851 5148 5.996644 TCCGTCCCATAATGTAAGACATTT 58.003 37.500 9.92 0.00 45.80 2.32
4852 5149 6.053005 TCCGTCCCATAATGTAAGACATTTC 58.947 40.000 9.92 0.00 45.80 2.17
4853 5150 6.055588 CCGTCCCATAATGTAAGACATTTCT 58.944 40.000 9.92 0.00 45.80 2.52
4854 5151 6.017934 CCGTCCCATAATGTAAGACATTTCTG 60.018 42.308 9.92 8.32 45.80 3.02
4855 5152 6.761242 CGTCCCATAATGTAAGACATTTCTGA 59.239 38.462 9.92 1.22 45.80 3.27
4856 5153 7.254455 CGTCCCATAATGTAAGACATTTCTGAC 60.254 40.741 9.92 10.36 45.80 3.51
4857 5154 7.552687 GTCCCATAATGTAAGACATTTCTGACA 59.447 37.037 9.92 1.41 45.80 3.58
4858 5155 7.552687 TCCCATAATGTAAGACATTTCTGACAC 59.447 37.037 9.92 0.00 45.80 3.67
4859 5156 7.554118 CCCATAATGTAAGACATTTCTGACACT 59.446 37.037 9.92 0.00 45.80 3.55
4860 5157 9.599866 CCATAATGTAAGACATTTCTGACACTA 57.400 33.333 9.92 0.00 45.80 2.74
4863 5160 7.891183 ATGTAAGACATTTCTGACACTACAC 57.109 36.000 0.90 0.00 44.81 2.90
4864 5161 7.050970 TGTAAGACATTTCTGACACTACACT 57.949 36.000 0.00 0.00 38.21 3.55
4865 5162 7.145985 TGTAAGACATTTCTGACACTACACTC 58.854 38.462 0.00 0.00 38.21 3.51
4866 5163 4.799678 AGACATTTCTGACACTACACTCG 58.200 43.478 0.00 0.00 0.00 4.18
4867 5164 4.519350 AGACATTTCTGACACTACACTCGA 59.481 41.667 0.00 0.00 0.00 4.04
4868 5165 4.799678 ACATTTCTGACACTACACTCGAG 58.200 43.478 11.84 11.84 0.00 4.04
4869 5166 4.278669 ACATTTCTGACACTACACTCGAGT 59.721 41.667 13.58 13.58 0.00 4.18
4870 5167 4.485024 TTTCTGACACTACACTCGAGTC 57.515 45.455 16.96 3.20 0.00 3.36
4871 5168 3.121738 TCTGACACTACACTCGAGTCA 57.878 47.619 16.96 8.17 37.61 3.41
4872 5169 3.473625 TCTGACACTACACTCGAGTCAA 58.526 45.455 16.96 5.61 38.58 3.18
4873 5170 3.881089 TCTGACACTACACTCGAGTCAAA 59.119 43.478 16.96 2.84 38.58 2.69
4874 5171 4.337274 TCTGACACTACACTCGAGTCAAAA 59.663 41.667 16.96 0.13 38.58 2.44
4875 5172 5.001237 TGACACTACACTCGAGTCAAAAA 57.999 39.130 16.96 0.00 36.39 1.94
4893 5190 4.687901 AAAAAGGCATACATTATGGGGC 57.312 40.909 0.00 0.00 36.68 5.80
4894 5191 1.909700 AAGGCATACATTATGGGGCG 58.090 50.000 0.00 0.00 36.68 6.13
4895 5192 0.038166 AGGCATACATTATGGGGCGG 59.962 55.000 0.00 0.00 36.68 6.13
4896 5193 0.037590 GGCATACATTATGGGGCGGA 59.962 55.000 0.00 0.00 36.68 5.54
4897 5194 1.453155 GCATACATTATGGGGCGGAG 58.547 55.000 0.00 0.00 36.68 4.63
4898 5195 1.950484 GCATACATTATGGGGCGGAGG 60.950 57.143 0.00 0.00 36.68 4.30
4899 5196 0.991920 ATACATTATGGGGCGGAGGG 59.008 55.000 0.00 0.00 0.00 4.30
4904 5201 1.358152 TTATGGGGCGGAGGGATTAG 58.642 55.000 0.00 0.00 0.00 1.73
4918 5215 4.786425 AGGGATTAGAAAGCAGATGAACC 58.214 43.478 0.00 0.00 0.00 3.62
4919 5216 4.228210 AGGGATTAGAAAGCAGATGAACCA 59.772 41.667 0.00 0.00 0.00 3.67
4920 5217 5.103771 AGGGATTAGAAAGCAGATGAACCAT 60.104 40.000 0.00 0.00 0.00 3.55
4921 5218 6.101734 AGGGATTAGAAAGCAGATGAACCATA 59.898 38.462 0.00 0.00 0.00 2.74
4922 5219 6.944862 GGGATTAGAAAGCAGATGAACCATAT 59.055 38.462 0.00 0.00 0.00 1.78
4923 5220 8.103305 GGGATTAGAAAGCAGATGAACCATATA 58.897 37.037 0.00 0.00 0.00 0.86
4924 5221 8.940952 GGATTAGAAAGCAGATGAACCATATAC 58.059 37.037 0.00 0.00 0.00 1.47
4925 5222 7.946655 TTAGAAAGCAGATGAACCATATACG 57.053 36.000 0.00 0.00 0.00 3.06
4926 5223 4.752101 AGAAAGCAGATGAACCATATACGC 59.248 41.667 0.00 0.00 0.00 4.42
4927 5224 3.751479 AGCAGATGAACCATATACGCA 57.249 42.857 0.00 0.00 0.00 5.24
4928 5225 4.071961 AGCAGATGAACCATATACGCAA 57.928 40.909 0.00 0.00 0.00 4.85
4929 5226 3.809832 AGCAGATGAACCATATACGCAAC 59.190 43.478 0.00 0.00 0.00 4.17
4930 5227 3.559655 GCAGATGAACCATATACGCAACA 59.440 43.478 0.00 0.00 0.00 3.33
4931 5228 4.214119 GCAGATGAACCATATACGCAACAT 59.786 41.667 0.00 0.00 0.00 2.71
4932 5229 5.615544 GCAGATGAACCATATACGCAACATC 60.616 44.000 0.00 0.00 34.88 3.06
4933 5230 4.997395 AGATGAACCATATACGCAACATCC 59.003 41.667 0.00 0.00 35.13 3.51
4934 5231 4.415881 TGAACCATATACGCAACATCCT 57.584 40.909 0.00 0.00 0.00 3.24
4935 5232 4.377021 TGAACCATATACGCAACATCCTC 58.623 43.478 0.00 0.00 0.00 3.71
4936 5233 4.100963 TGAACCATATACGCAACATCCTCT 59.899 41.667 0.00 0.00 0.00 3.69
4937 5234 4.258702 ACCATATACGCAACATCCTCTC 57.741 45.455 0.00 0.00 0.00 3.20
4938 5235 3.641436 ACCATATACGCAACATCCTCTCA 59.359 43.478 0.00 0.00 0.00 3.27
4939 5236 4.240888 CCATATACGCAACATCCTCTCAG 58.759 47.826 0.00 0.00 0.00 3.35
4940 5237 4.262207 CCATATACGCAACATCCTCTCAGT 60.262 45.833 0.00 0.00 0.00 3.41
4941 5238 5.048013 CCATATACGCAACATCCTCTCAGTA 60.048 44.000 0.00 0.00 0.00 2.74
4942 5239 2.656560 ACGCAACATCCTCTCAGTAC 57.343 50.000 0.00 0.00 0.00 2.73
4947 5244 2.398252 ACATCCTCTCAGTACGACGA 57.602 50.000 0.00 0.00 0.00 4.20
5025 5322 6.929049 TCTACTACTCCAAAACATGAACACAG 59.071 38.462 0.00 0.00 0.00 3.66
5035 5334 7.012327 CCAAAACATGAACACAGAGAGTTTCTA 59.988 37.037 0.00 0.00 33.83 2.10
5040 5339 6.576662 TGAACACAGAGAGTTTCTACCTAG 57.423 41.667 0.00 0.00 33.83 3.02
5050 5349 2.305052 GTTTCTACCTAGCCCAACAGGT 59.695 50.000 0.00 0.00 46.88 4.00
5051 5350 1.568504 TCTACCTAGCCCAACAGGTG 58.431 55.000 3.53 0.00 44.93 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.577328 CTGGGCATTGGACGTGTCAC 61.577 60.000 0.00 0.00 0.00 3.67
84 133 0.247974 CCTCTACGAACGCAGGTACG 60.248 60.000 0.00 0.00 39.50 3.67
96 145 1.738350 ACACTGACGATCACCTCTACG 59.262 52.381 0.00 0.00 0.00 3.51
121 170 6.527722 GCATGATACAAATCAAATGTTCACGT 59.472 34.615 0.00 0.00 45.12 4.49
122 171 6.748658 AGCATGATACAAATCAAATGTTCACG 59.251 34.615 0.00 0.00 45.12 4.35
140 189 6.455360 ACATCCGATAAAAACAAGCATGAT 57.545 33.333 0.00 0.00 0.00 2.45
141 190 5.163663 GGACATCCGATAAAAACAAGCATGA 60.164 40.000 0.00 0.00 0.00 3.07
142 191 5.036737 GGACATCCGATAAAAACAAGCATG 58.963 41.667 0.00 0.00 0.00 4.06
143 192 4.097892 GGGACATCCGATAAAAACAAGCAT 59.902 41.667 0.00 0.00 36.71 3.79
144 193 3.442273 GGGACATCCGATAAAAACAAGCA 59.558 43.478 0.00 0.00 36.71 3.91
145 194 3.181490 GGGGACATCCGATAAAAACAAGC 60.181 47.826 0.00 0.00 36.71 4.01
146 195 4.632538 GGGGACATCCGATAAAAACAAG 57.367 45.455 0.00 0.00 36.71 3.16
165 214 0.107017 AAGCATGATGTCCCTTCGGG 60.107 55.000 0.00 0.00 46.11 5.14
166 215 1.134280 AGAAGCATGATGTCCCTTCGG 60.134 52.381 0.00 0.00 38.87 4.30
167 216 2.322355 AGAAGCATGATGTCCCTTCG 57.678 50.000 0.00 0.00 38.87 3.79
168 217 5.397142 AAAAAGAAGCATGATGTCCCTTC 57.603 39.130 0.00 0.00 35.19 3.46
169 218 7.836183 ACTATAAAAAGAAGCATGATGTCCCTT 59.164 33.333 0.00 0.00 0.00 3.95
170 219 7.349598 ACTATAAAAAGAAGCATGATGTCCCT 58.650 34.615 0.00 0.00 0.00 4.20
171 220 7.573968 ACTATAAAAAGAAGCATGATGTCCC 57.426 36.000 0.00 0.00 0.00 4.46
209 258 8.145767 TCTTATCTTACACACGAAGAAAAAGGA 58.854 33.333 0.00 0.00 36.54 3.36
414 464 2.851798 GCTCCACAGCAAAGAGAGG 58.148 57.895 0.00 0.00 46.06 3.69
502 555 4.516195 GGTCTCCCTTCTCGCGGC 62.516 72.222 6.13 0.00 0.00 6.53
716 770 1.273986 TGGATGGCTAGCTTCCTGCA 61.274 55.000 26.82 13.29 45.94 4.41
786 840 2.559668 CAAGAACGACCACACCCTACTA 59.440 50.000 0.00 0.00 0.00 1.82
787 841 1.343465 CAAGAACGACCACACCCTACT 59.657 52.381 0.00 0.00 0.00 2.57
886 946 0.451383 CGCCAAATCTGCCATCGAAA 59.549 50.000 0.00 0.00 0.00 3.46
915 975 2.303311 CTCCCGATATCCTTTCCCCTTC 59.697 54.545 0.00 0.00 0.00 3.46
923 983 2.252714 GCCTTCTCTCCCGATATCCTT 58.747 52.381 0.00 0.00 0.00 3.36
1170 1230 2.840511 TGGTCCTCCAGCAGGTTATTA 58.159 47.619 0.00 0.00 43.95 0.98
1191 1251 0.042131 ACCCGGATTCCACCTGACTA 59.958 55.000 0.73 0.00 0.00 2.59
1221 1281 1.002134 CTGCAGGTTGGGATCCGTT 60.002 57.895 5.57 0.00 0.00 4.44
1244 1304 0.317938 ATCATAGACGCCGACGAAGC 60.318 55.000 0.00 0.00 43.93 3.86
1287 1347 1.368641 TGTGGTCATTGATGTAGCGC 58.631 50.000 0.00 0.00 0.00 5.92
1337 1397 2.669569 GGAGAGCCGCAGCAACAA 60.670 61.111 0.00 0.00 43.56 2.83
1338 1398 3.630013 AGGAGAGCCGCAGCAACA 61.630 61.111 0.00 0.00 43.56 3.33
1410 1501 5.023533 ACAATACAACTATGGATCGCAGT 57.976 39.130 0.00 0.00 0.00 4.40
1411 1502 5.991328 AACAATACAACTATGGATCGCAG 57.009 39.130 0.00 0.00 0.00 5.18
1413 1504 5.277828 GGGAAACAATACAACTATGGATCGC 60.278 44.000 0.00 0.00 0.00 4.58
1479 1570 2.818130 TGGCAAGAAAAATGGCTGAC 57.182 45.000 1.81 0.00 43.24 3.51
1495 1586 8.627403 CATCCAATAAATATCTACATCCATGGC 58.373 37.037 6.96 0.00 0.00 4.40
1503 1594 6.541907 TGCAGGCATCCAATAAATATCTACA 58.458 36.000 0.00 0.00 0.00 2.74
1564 1655 9.719279 CATCATTTAAATTGCACTTGTTTGTTT 57.281 25.926 0.00 0.00 0.00 2.83
1575 1666 7.028962 CCGAAGAGAACATCATTTAAATTGCA 58.971 34.615 0.00 0.00 0.00 4.08
1593 1684 3.882025 GGCAACTGCTCCGAAGAG 58.118 61.111 1.06 0.00 43.57 2.85
1774 1873 5.775686 CTGAAAAAGGAAGTTCATCATGCA 58.224 37.500 5.01 0.00 33.45 3.96
1988 2087 1.112113 GTCTCCCCAGAATAGCACGA 58.888 55.000 0.00 0.00 0.00 4.35
2173 2272 4.980434 CAGTTGCAATTTCTGAACTCCAAG 59.020 41.667 0.59 0.00 0.00 3.61
2174 2273 4.202141 CCAGTTGCAATTTCTGAACTCCAA 60.202 41.667 15.16 0.00 0.00 3.53
2175 2274 3.318839 CCAGTTGCAATTTCTGAACTCCA 59.681 43.478 15.16 0.00 0.00 3.86
2215 2314 6.924060 CCTAATGTCCGAAGACTGTATAAAGG 59.076 42.308 0.00 0.00 43.91 3.11
2243 2342 9.567848 CGCAGTTATGGTAATAATGAAAAGTTT 57.432 29.630 0.00 0.00 31.03 2.66
2281 2380 6.851222 AATTCTAATAGAAGCACCATGACG 57.149 37.500 8.78 0.00 37.69 4.35
2285 2384 8.790718 CAGCAATAATTCTAATAGAAGCACCAT 58.209 33.333 8.78 0.00 37.69 3.55
2286 2385 7.255242 GCAGCAATAATTCTAATAGAAGCACCA 60.255 37.037 8.78 0.00 37.69 4.17
2287 2386 7.080724 GCAGCAATAATTCTAATAGAAGCACC 58.919 38.462 8.78 0.00 37.69 5.01
2288 2387 7.642669 TGCAGCAATAATTCTAATAGAAGCAC 58.357 34.615 8.78 3.87 37.69 4.40
2305 2404 5.581874 GCCTAATGTAAAAACATGCAGCAAT 59.418 36.000 0.00 0.00 0.00 3.56
2346 2445 6.318900 AGCCAACAAGAACACCTAAATATAGC 59.681 38.462 0.00 0.00 0.00 2.97
2352 2451 6.969993 AAATAGCCAACAAGAACACCTAAA 57.030 33.333 0.00 0.00 0.00 1.85
2438 2627 7.520614 GCTGAATATGGTATTTGTCTTGGCTAC 60.521 40.741 0.00 0.00 0.00 3.58
2502 2691 8.615878 AGAAACGCAGGCATACATAATAATTA 57.384 30.769 0.00 0.00 0.00 1.40
2521 2710 7.957484 CACACCTCATATCTGTTTTAAGAAACG 59.043 37.037 0.00 0.00 46.44 3.60
2549 2738 7.655328 TGCACATGACGATATTGTACATGATAA 59.345 33.333 26.03 15.49 40.13 1.75
2550 2739 7.151308 TGCACATGACGATATTGTACATGATA 58.849 34.615 26.03 16.01 40.13 2.15
2551 2740 5.990996 TGCACATGACGATATTGTACATGAT 59.009 36.000 26.03 15.66 40.13 2.45
2552 2741 5.355596 TGCACATGACGATATTGTACATGA 58.644 37.500 26.03 12.51 40.13 3.07
2553 2742 5.655893 TGCACATGACGATATTGTACATG 57.344 39.130 21.68 21.68 42.37 3.21
2554 2743 6.866010 AATGCACATGACGATATTGTACAT 57.134 33.333 0.00 0.00 30.52 2.29
2555 2744 6.238347 GGAAATGCACATGACGATATTGTACA 60.238 38.462 0.00 0.00 0.00 2.90
2556 2745 6.017934 AGGAAATGCACATGACGATATTGTAC 60.018 38.462 0.00 0.00 0.00 2.90
2565 2762 4.122046 TCATCTAGGAAATGCACATGACG 58.878 43.478 0.00 0.00 0.00 4.35
2592 2789 5.299028 TGCAAGAGACAACAGCAGATTAAAA 59.701 36.000 0.00 0.00 0.00 1.52
2788 2987 3.422796 TCAGAACTAAGAAGCGGTCTCT 58.577 45.455 0.00 0.00 34.56 3.10
3017 3216 6.910433 ACAGAAGCAAAAATACGTACTTTGTG 59.090 34.615 23.02 17.83 33.51 3.33
3033 3232 9.431887 AGAACGATAAAATTACTACAGAAGCAA 57.568 29.630 0.00 0.00 0.00 3.91
3051 3250 6.485313 ACAGAAACATCAACCAAAGAACGATA 59.515 34.615 0.00 0.00 0.00 2.92
3208 3410 7.228706 CAGGCGAACAAAATCTAATATACCCTT 59.771 37.037 0.00 0.00 0.00 3.95
3251 3453 5.123186 CGATAACTTGGTGCCATTTAAGTCA 59.877 40.000 0.00 0.00 32.61 3.41
3314 3516 9.932699 CAACATTTTGATGCAGACAAATTTAAA 57.067 25.926 18.04 7.47 37.15 1.52
3356 3558 7.238710 ACACAAAATTCTAGGGACTAAACCAT 58.761 34.615 0.00 0.00 42.17 3.55
3383 3585 1.415659 CTAATCCAGGACCAGCAGAGG 59.584 57.143 0.00 0.00 0.00 3.69
3446 3648 7.095910 AGTGTGACATGAAAAGAGAGACATAG 58.904 38.462 0.00 0.00 0.00 2.23
3453 3655 6.768483 TCCAATAGTGTGACATGAAAAGAGA 58.232 36.000 0.00 0.00 0.00 3.10
3455 3657 7.121168 GGATTCCAATAGTGTGACATGAAAAGA 59.879 37.037 0.00 0.00 0.00 2.52
3469 3671 3.322254 CAGCGACTAGGGATTCCAATAGT 59.678 47.826 15.89 15.89 32.63 2.12
3470 3672 3.574396 TCAGCGACTAGGGATTCCAATAG 59.426 47.826 4.80 8.58 34.83 1.73
3471 3673 3.572642 TCAGCGACTAGGGATTCCAATA 58.427 45.455 4.80 0.00 34.83 1.90
3472 3674 2.398588 TCAGCGACTAGGGATTCCAAT 58.601 47.619 4.80 0.00 34.83 3.16
3473 3675 1.860641 TCAGCGACTAGGGATTCCAA 58.139 50.000 4.80 0.00 34.83 3.53
3474 3676 1.860641 TTCAGCGACTAGGGATTCCA 58.139 50.000 4.80 0.00 34.83 3.53
3475 3677 3.134458 CAATTCAGCGACTAGGGATTCC 58.866 50.000 0.00 0.00 0.00 3.01
3476 3678 4.060038 TCAATTCAGCGACTAGGGATTC 57.940 45.455 0.00 0.00 0.00 2.52
3477 3679 4.446371 CTTCAATTCAGCGACTAGGGATT 58.554 43.478 0.00 0.00 0.00 3.01
3478 3680 3.181461 CCTTCAATTCAGCGACTAGGGAT 60.181 47.826 0.00 0.00 0.00 3.85
3479 3681 2.168521 CCTTCAATTCAGCGACTAGGGA 59.831 50.000 0.00 0.00 0.00 4.20
3480 3682 2.093447 ACCTTCAATTCAGCGACTAGGG 60.093 50.000 0.00 0.00 0.00 3.53
3481 3683 3.252974 ACCTTCAATTCAGCGACTAGG 57.747 47.619 0.00 0.00 0.00 3.02
3482 3684 5.411781 AGTAACCTTCAATTCAGCGACTAG 58.588 41.667 0.00 0.00 0.00 2.57
3483 3685 5.401531 AGTAACCTTCAATTCAGCGACTA 57.598 39.130 0.00 0.00 0.00 2.59
3484 3686 4.273148 AGTAACCTTCAATTCAGCGACT 57.727 40.909 0.00 0.00 0.00 4.18
3485 3687 4.712763 CAAGTAACCTTCAATTCAGCGAC 58.287 43.478 0.00 0.00 0.00 5.19
3505 3707 5.574891 TTTGCAGACTGAAGTTTAAGCAA 57.425 34.783 6.65 0.00 38.76 3.91
3540 3742 9.547753 GAGTACAAAATATCTCCTCAATAAGCA 57.452 33.333 0.00 0.00 0.00 3.91
3564 3766 4.022155 GCTACTATAAAGGAACGGAGGGAG 60.022 50.000 0.00 0.00 0.00 4.30
3565 3767 3.893813 GCTACTATAAAGGAACGGAGGGA 59.106 47.826 0.00 0.00 0.00 4.20
3566 3768 3.640029 TGCTACTATAAAGGAACGGAGGG 59.360 47.826 0.00 0.00 0.00 4.30
3567 3769 4.341520 ACTGCTACTATAAAGGAACGGAGG 59.658 45.833 0.00 0.00 0.00 4.30
3568 3770 5.517322 ACTGCTACTATAAAGGAACGGAG 57.483 43.478 0.00 0.00 0.00 4.63
3569 3771 5.927281 AACTGCTACTATAAAGGAACGGA 57.073 39.130 0.00 0.00 0.00 4.69
3570 3772 7.431249 TGATAACTGCTACTATAAAGGAACGG 58.569 38.462 0.00 0.00 0.00 4.44
3571 3773 9.130312 GATGATAACTGCTACTATAAAGGAACG 57.870 37.037 0.00 0.00 0.00 3.95
3579 3781 9.800572 ACTCTGAAGATGATAACTGCTACTATA 57.199 33.333 0.00 0.00 0.00 1.31
3580 3782 8.704849 ACTCTGAAGATGATAACTGCTACTAT 57.295 34.615 0.00 0.00 0.00 2.12
3581 3783 8.526667 AACTCTGAAGATGATAACTGCTACTA 57.473 34.615 0.00 0.00 0.00 1.82
3582 3784 7.123397 TGAACTCTGAAGATGATAACTGCTACT 59.877 37.037 0.00 0.00 0.00 2.57
3583 3785 7.261325 TGAACTCTGAAGATGATAACTGCTAC 58.739 38.462 0.00 0.00 0.00 3.58
3584 3786 7.340487 TCTGAACTCTGAAGATGATAACTGCTA 59.660 37.037 0.00 0.00 0.00 3.49
3585 3787 6.154192 TCTGAACTCTGAAGATGATAACTGCT 59.846 38.462 0.00 0.00 0.00 4.24
3605 3807 5.124036 TGGAAAAGAAAAGGAGGTCTGAA 57.876 39.130 0.00 0.00 0.00 3.02
3608 3810 4.474394 CCTTGGAAAAGAAAAGGAGGTCT 58.526 43.478 0.00 0.00 42.65 3.85
3609 3811 3.574396 CCCTTGGAAAAGAAAAGGAGGTC 59.426 47.826 2.25 0.00 42.65 3.85
3610 3812 3.206639 TCCCTTGGAAAAGAAAAGGAGGT 59.793 43.478 2.25 0.00 42.65 3.85
3612 3814 4.039245 GGTTCCCTTGGAAAAGAAAAGGAG 59.961 45.833 2.25 0.00 43.86 3.69
3614 3816 3.709141 TGGTTCCCTTGGAAAAGAAAAGG 59.291 43.478 0.00 0.00 43.86 3.11
3617 3819 5.966853 AAATGGTTCCCTTGGAAAAGAAA 57.033 34.783 0.00 0.00 43.86 2.52
3618 3820 5.966853 AAAATGGTTCCCTTGGAAAAGAA 57.033 34.783 0.00 0.00 43.86 2.52
3619 3821 5.966853 AAAAATGGTTCCCTTGGAAAAGA 57.033 34.783 0.00 0.00 43.86 2.52
3620 3822 7.061566 TCTAAAAATGGTTCCCTTGGAAAAG 57.938 36.000 0.00 0.00 43.86 2.27
3621 3823 7.512402 AGATCTAAAAATGGTTCCCTTGGAAAA 59.488 33.333 0.00 0.00 43.86 2.29
3622 3824 7.016296 AGATCTAAAAATGGTTCCCTTGGAAA 58.984 34.615 0.00 0.00 43.86 3.13
3624 3826 6.011628 AGAGATCTAAAAATGGTTCCCTTGGA 60.012 38.462 0.00 0.00 0.00 3.53
3625 3827 6.190587 AGAGATCTAAAAATGGTTCCCTTGG 58.809 40.000 0.00 0.00 0.00 3.61
3626 3828 7.394359 TGAAGAGATCTAAAAATGGTTCCCTTG 59.606 37.037 0.00 0.00 0.00 3.61
3627 3829 7.470192 TGAAGAGATCTAAAAATGGTTCCCTT 58.530 34.615 0.00 0.00 0.00 3.95
3666 3955 3.762288 AGCTCATTCACAATGCTTCATGT 59.238 39.130 0.00 0.00 38.77 3.21
3705 3995 8.837389 GTTCAGGAAGGTGTGATTAATATAACC 58.163 37.037 5.23 5.23 0.00 2.85
3706 3996 9.614792 AGTTCAGGAAGGTGTGATTAATATAAC 57.385 33.333 0.00 0.00 0.00 1.89
3743 4034 1.975660 TTGGTTAGTTGGTGAGGTGC 58.024 50.000 0.00 0.00 0.00 5.01
3773 4064 7.895975 TGAAATGTGAAGTGAGATTCAGTAG 57.104 36.000 0.00 0.00 39.78 2.57
3809 4100 1.614317 GCTGGGTTCTGCTACATGGTT 60.614 52.381 0.00 0.00 35.36 3.67
3819 4110 4.521146 AGACATAATGAAGCTGGGTTCTG 58.479 43.478 12.64 6.16 0.00 3.02
3822 4113 6.245408 TGTTTAGACATAATGAAGCTGGGTT 58.755 36.000 0.00 0.00 0.00 4.11
3942 4234 4.346709 TCGAGCAATCCCCTGAAACATATA 59.653 41.667 0.00 0.00 0.00 0.86
3943 4235 3.136443 TCGAGCAATCCCCTGAAACATAT 59.864 43.478 0.00 0.00 0.00 1.78
4094 4386 2.158769 AGTGGCTATGGCATTCGAATCA 60.159 45.455 7.92 4.75 40.92 2.57
4126 4418 2.147387 AGAGAAACTGTGGGCCGGT 61.147 57.895 1.90 0.00 0.00 5.28
4205 4497 4.991687 GTGTCTTCTTAACTCCAGTGGAAG 59.008 45.833 14.17 7.81 34.45 3.46
4208 4500 3.005472 TCGTGTCTTCTTAACTCCAGTGG 59.995 47.826 1.40 1.40 0.00 4.00
4218 4510 5.524971 TTTCTGGTCTTCGTGTCTTCTTA 57.475 39.130 0.00 0.00 0.00 2.10
4233 4525 4.536295 TCTTTTCCTTCCCTTTTCTGGT 57.464 40.909 0.00 0.00 0.00 4.00
4243 4535 6.768381 TCTTCTTGTCTTCTTCTTTTCCTTCC 59.232 38.462 0.00 0.00 0.00 3.46
4244 4536 7.519809 GCTCTTCTTGTCTTCTTCTTTTCCTTC 60.520 40.741 0.00 0.00 0.00 3.46
4246 4538 5.762711 GCTCTTCTTGTCTTCTTCTTTTCCT 59.237 40.000 0.00 0.00 0.00 3.36
4249 4541 5.008514 GCTGCTCTTCTTGTCTTCTTCTTTT 59.991 40.000 0.00 0.00 0.00 2.27
4250 4542 4.514816 GCTGCTCTTCTTGTCTTCTTCTTT 59.485 41.667 0.00 0.00 0.00 2.52
4251 4543 4.064388 GCTGCTCTTCTTGTCTTCTTCTT 58.936 43.478 0.00 0.00 0.00 2.52
4476 4771 1.002544 GCCGAAGATTAGCCAGCCTAT 59.997 52.381 0.00 0.00 0.00 2.57
4477 4772 0.393077 GCCGAAGATTAGCCAGCCTA 59.607 55.000 0.00 0.00 0.00 3.93
4493 4788 2.793946 GCAACCTGCTACATGCCG 59.206 61.111 0.00 0.00 40.96 5.69
4517 4812 3.645212 AGAGCTCAGCAGATTAAGGCATA 59.355 43.478 17.77 0.00 0.00 3.14
4563 4858 1.662629 GGCATCGACATGTCAACAGAG 59.337 52.381 24.93 8.14 34.43 3.35
4577 4872 1.730121 GCAAGTTCACATGTGGCATCG 60.730 52.381 25.16 12.54 0.00 3.84
4578 4873 1.270274 TGCAAGTTCACATGTGGCATC 59.730 47.619 25.16 12.81 0.00 3.91
4579 4874 1.000060 GTGCAAGTTCACATGTGGCAT 60.000 47.619 25.16 9.29 36.97 4.40
4580 4875 0.385029 GTGCAAGTTCACATGTGGCA 59.615 50.000 25.16 21.67 36.97 4.92
4581 4876 0.385029 TGTGCAAGTTCACATGTGGC 59.615 50.000 25.16 19.43 41.57 5.01
4609 4906 1.536943 GGTTCCCTGTGACGAGAGCT 61.537 60.000 0.00 0.00 0.00 4.09
4611 4908 0.244994 CAGGTTCCCTGTGACGAGAG 59.755 60.000 1.99 0.00 45.82 3.20
4622 4919 1.004745 TGGCTTCTTCATCAGGTTCCC 59.995 52.381 0.00 0.00 0.00 3.97
4623 4920 2.496899 TGGCTTCTTCATCAGGTTCC 57.503 50.000 0.00 0.00 0.00 3.62
4625 4922 4.021719 CACAAATGGCTTCTTCATCAGGTT 60.022 41.667 0.00 0.00 0.00 3.50
4626 4923 3.508793 CACAAATGGCTTCTTCATCAGGT 59.491 43.478 0.00 0.00 0.00 4.00
4628 4925 5.340803 CATCACAAATGGCTTCTTCATCAG 58.659 41.667 0.00 0.00 0.00 2.90
4629 4926 4.158949 CCATCACAAATGGCTTCTTCATCA 59.841 41.667 0.00 0.00 31.75 3.07
4630 4927 4.679662 CCATCACAAATGGCTTCTTCATC 58.320 43.478 0.00 0.00 31.75 2.92
4631 4928 4.730949 CCATCACAAATGGCTTCTTCAT 57.269 40.909 0.00 0.00 31.75 2.57
4652 4949 0.109597 CGAACTCCACAAGGCATTGC 60.110 55.000 11.69 0.00 40.27 3.56
4653 4950 0.109597 GCGAACTCCACAAGGCATTG 60.110 55.000 10.01 10.01 42.46 2.82
4654 4951 0.537143 TGCGAACTCCACAAGGCATT 60.537 50.000 0.00 0.00 33.74 3.56
4655 4952 0.322816 ATGCGAACTCCACAAGGCAT 60.323 50.000 0.00 0.00 36.38 4.40
4656 4953 0.955428 GATGCGAACTCCACAAGGCA 60.955 55.000 0.00 0.00 33.74 4.75
4657 4954 1.796796 GATGCGAACTCCACAAGGC 59.203 57.895 0.00 0.00 33.74 4.35
4658 4955 0.389817 TCGATGCGAACTCCACAAGG 60.390 55.000 0.00 0.00 31.06 3.61
4659 4956 1.391485 CTTCGATGCGAACTCCACAAG 59.609 52.381 0.00 0.00 41.05 3.16
4660 4957 1.428448 CTTCGATGCGAACTCCACAA 58.572 50.000 0.00 0.00 41.05 3.33
4661 4958 1.014044 GCTTCGATGCGAACTCCACA 61.014 55.000 7.60 0.00 41.05 4.17
4662 4959 0.737715 AGCTTCGATGCGAACTCCAC 60.738 55.000 16.59 0.00 41.05 4.02
4663 4960 0.737367 CAGCTTCGATGCGAACTCCA 60.737 55.000 16.59 0.00 41.05 3.86
4664 4961 0.458543 TCAGCTTCGATGCGAACTCC 60.459 55.000 16.59 0.00 41.05 3.85
4665 4962 0.919981 CTCAGCTTCGATGCGAACTC 59.080 55.000 16.59 0.00 41.05 3.01
4666 4963 1.080995 GCTCAGCTTCGATGCGAACT 61.081 55.000 16.59 0.00 41.05 3.01
4667 4964 1.346538 GCTCAGCTTCGATGCGAAC 59.653 57.895 16.59 9.41 41.05 3.95
4668 4965 1.811266 GGCTCAGCTTCGATGCGAA 60.811 57.895 16.59 8.67 43.75 4.70
4669 4966 2.202797 GGCTCAGCTTCGATGCGA 60.203 61.111 16.59 15.01 38.13 5.10
4670 4967 3.267860 GGGCTCAGCTTCGATGCG 61.268 66.667 16.59 11.95 38.13 4.73
4671 4968 2.899339 GGGGCTCAGCTTCGATGC 60.899 66.667 15.04 15.04 0.00 3.91
4672 4969 1.227497 GAGGGGCTCAGCTTCGATG 60.227 63.158 0.00 0.00 0.00 3.84
4673 4970 1.053264 ATGAGGGGCTCAGCTTCGAT 61.053 55.000 0.00 0.00 44.08 3.59
4674 4971 1.267574 AATGAGGGGCTCAGCTTCGA 61.268 55.000 0.00 0.00 44.08 3.71
4675 4972 0.393537 AAATGAGGGGCTCAGCTTCG 60.394 55.000 0.00 0.00 44.08 3.79
4676 4973 1.844687 AAAATGAGGGGCTCAGCTTC 58.155 50.000 0.00 0.00 44.08 3.86
4677 4974 3.456380 TTAAAATGAGGGGCTCAGCTT 57.544 42.857 0.00 0.00 44.08 3.74
4678 4975 3.677156 ATTAAAATGAGGGGCTCAGCT 57.323 42.857 0.00 0.00 44.08 4.24
4679 4976 4.403752 AGAAATTAAAATGAGGGGCTCAGC 59.596 41.667 0.00 0.00 44.08 4.26
4680 4977 6.535963 AAGAAATTAAAATGAGGGGCTCAG 57.464 37.500 0.00 0.00 44.08 3.35
4681 4978 6.933514 AAAGAAATTAAAATGAGGGGCTCA 57.066 33.333 0.00 0.00 44.99 4.26
4684 4981 9.244799 CGTAATAAAGAAATTAAAATGAGGGGC 57.755 33.333 0.00 0.00 0.00 5.80
4698 4995 9.737427 TCTTTCAAATTGCACGTAATAAAGAAA 57.263 25.926 0.00 0.00 30.01 2.52
4699 4996 9.737427 TTCTTTCAAATTGCACGTAATAAAGAA 57.263 25.926 12.19 12.19 37.81 2.52
4700 4997 9.737427 TTTCTTTCAAATTGCACGTAATAAAGA 57.263 25.926 0.00 0.00 0.00 2.52
4701 4998 9.777843 GTTTCTTTCAAATTGCACGTAATAAAG 57.222 29.630 0.00 0.00 0.00 1.85
4702 4999 9.522804 AGTTTCTTTCAAATTGCACGTAATAAA 57.477 25.926 0.00 0.00 0.00 1.40
4703 5000 9.522804 AAGTTTCTTTCAAATTGCACGTAATAA 57.477 25.926 0.00 0.00 0.00 1.40
4704 5001 9.176181 GAAGTTTCTTTCAAATTGCACGTAATA 57.824 29.630 0.00 0.00 0.00 0.98
4705 5002 7.169140 GGAAGTTTCTTTCAAATTGCACGTAAT 59.831 33.333 0.00 0.00 0.00 1.89
4706 5003 6.474102 GGAAGTTTCTTTCAAATTGCACGTAA 59.526 34.615 0.00 0.00 0.00 3.18
4707 5004 5.974751 GGAAGTTTCTTTCAAATTGCACGTA 59.025 36.000 0.00 0.00 0.00 3.57
4708 5005 4.803613 GGAAGTTTCTTTCAAATTGCACGT 59.196 37.500 0.00 0.00 0.00 4.49
4709 5006 4.803088 TGGAAGTTTCTTTCAAATTGCACG 59.197 37.500 0.00 0.00 0.00 5.34
4710 5007 6.660887 TTGGAAGTTTCTTTCAAATTGCAC 57.339 33.333 1.29 0.00 0.00 4.57
4711 5008 6.878389 ACTTTGGAAGTTTCTTTCAAATTGCA 59.122 30.769 13.92 0.00 39.04 4.08
4712 5009 7.307493 ACTTTGGAAGTTTCTTTCAAATTGC 57.693 32.000 13.92 0.00 39.04 3.56
4726 5023 8.990163 TCTACCTTGATTAAAACTTTGGAAGT 57.010 30.769 0.00 0.00 45.46 3.01
4729 5026 8.357402 GCTTTCTACCTTGATTAAAACTTTGGA 58.643 33.333 0.00 0.00 0.00 3.53
4730 5027 7.326063 CGCTTTCTACCTTGATTAAAACTTTGG 59.674 37.037 0.00 0.00 0.00 3.28
4731 5028 8.073768 TCGCTTTCTACCTTGATTAAAACTTTG 58.926 33.333 0.00 0.00 0.00 2.77
4732 5029 8.161699 TCGCTTTCTACCTTGATTAAAACTTT 57.838 30.769 0.00 0.00 0.00 2.66
4733 5030 7.573283 GCTCGCTTTCTACCTTGATTAAAACTT 60.573 37.037 0.00 0.00 0.00 2.66
4734 5031 6.128254 GCTCGCTTTCTACCTTGATTAAAACT 60.128 38.462 0.00 0.00 0.00 2.66
4735 5032 6.022208 GCTCGCTTTCTACCTTGATTAAAAC 58.978 40.000 0.00 0.00 0.00 2.43
4736 5033 5.703592 TGCTCGCTTTCTACCTTGATTAAAA 59.296 36.000 0.00 0.00 0.00 1.52
4737 5034 5.242434 TGCTCGCTTTCTACCTTGATTAAA 58.758 37.500 0.00 0.00 0.00 1.52
4738 5035 4.827692 TGCTCGCTTTCTACCTTGATTAA 58.172 39.130 0.00 0.00 0.00 1.40
4739 5036 4.465632 TGCTCGCTTTCTACCTTGATTA 57.534 40.909 0.00 0.00 0.00 1.75
4740 5037 3.334583 TGCTCGCTTTCTACCTTGATT 57.665 42.857 0.00 0.00 0.00 2.57
4741 5038 3.118629 TCATGCTCGCTTTCTACCTTGAT 60.119 43.478 0.00 0.00 0.00 2.57
4742 5039 2.233676 TCATGCTCGCTTTCTACCTTGA 59.766 45.455 0.00 0.00 0.00 3.02
4743 5040 2.621338 TCATGCTCGCTTTCTACCTTG 58.379 47.619 0.00 0.00 0.00 3.61
4744 5041 3.550437 ATCATGCTCGCTTTCTACCTT 57.450 42.857 0.00 0.00 0.00 3.50
4745 5042 4.672587 TTATCATGCTCGCTTTCTACCT 57.327 40.909 0.00 0.00 0.00 3.08
4746 5043 5.294552 AGTTTTATCATGCTCGCTTTCTACC 59.705 40.000 0.00 0.00 0.00 3.18
4747 5044 6.351327 AGTTTTATCATGCTCGCTTTCTAC 57.649 37.500 0.00 0.00 0.00 2.59
4748 5045 7.979537 TCTTAGTTTTATCATGCTCGCTTTCTA 59.020 33.333 0.00 0.00 0.00 2.10
4749 5046 6.818644 TCTTAGTTTTATCATGCTCGCTTTCT 59.181 34.615 0.00 0.00 0.00 2.52
4768 5065 8.860088 AGAAAACCAATGCTACAAAATCTTAGT 58.140 29.630 0.00 0.00 0.00 2.24
4780 5077 2.961741 TGGCAACAGAAAACCAATGCTA 59.038 40.909 0.00 0.00 46.17 3.49
4812 5109 0.533755 CGGAAGGATGGCACCAGATC 60.534 60.000 8.48 0.00 0.00 2.75
4824 5121 4.100498 GTCTTACATTATGGGACGGAAGGA 59.900 45.833 0.00 0.00 0.00 3.36
4825 5122 4.141801 TGTCTTACATTATGGGACGGAAGG 60.142 45.833 0.00 0.00 0.00 3.46
4828 5125 5.623956 AATGTCTTACATTATGGGACGGA 57.376 39.130 3.51 0.00 46.11 4.69
4839 5136 7.671302 AGTGTAGTGTCAGAAATGTCTTACAT 58.329 34.615 3.24 0.00 39.56 2.29
4840 5137 7.050970 AGTGTAGTGTCAGAAATGTCTTACA 57.949 36.000 0.00 0.00 35.97 2.41
4841 5138 6.305877 CGAGTGTAGTGTCAGAAATGTCTTAC 59.694 42.308 0.00 0.00 28.78 2.34
4842 5139 6.206048 TCGAGTGTAGTGTCAGAAATGTCTTA 59.794 38.462 0.00 0.00 28.78 2.10
4843 5140 5.009710 TCGAGTGTAGTGTCAGAAATGTCTT 59.990 40.000 0.00 0.00 28.78 3.01
4844 5141 4.519350 TCGAGTGTAGTGTCAGAAATGTCT 59.481 41.667 0.00 0.00 32.85 3.41
4845 5142 4.795268 TCGAGTGTAGTGTCAGAAATGTC 58.205 43.478 0.00 0.00 0.00 3.06
4846 5143 4.278669 ACTCGAGTGTAGTGTCAGAAATGT 59.721 41.667 19.30 0.00 0.00 2.71
4847 5144 4.799678 ACTCGAGTGTAGTGTCAGAAATG 58.200 43.478 19.30 0.00 0.00 2.32
4848 5145 4.519350 TGACTCGAGTGTAGTGTCAGAAAT 59.481 41.667 25.58 0.00 37.25 2.17
4849 5146 3.881089 TGACTCGAGTGTAGTGTCAGAAA 59.119 43.478 25.58 0.00 37.25 2.52
4850 5147 3.473625 TGACTCGAGTGTAGTGTCAGAA 58.526 45.455 25.58 0.00 37.25 3.02
4851 5148 3.121738 TGACTCGAGTGTAGTGTCAGA 57.878 47.619 25.58 0.00 37.25 3.27
4852 5149 3.898517 TTGACTCGAGTGTAGTGTCAG 57.101 47.619 25.58 0.00 41.24 3.51
4853 5150 4.642445 TTTTGACTCGAGTGTAGTGTCA 57.358 40.909 25.58 10.20 39.41 3.58
4872 5169 3.069443 CGCCCCATAATGTATGCCTTTTT 59.931 43.478 0.00 0.00 34.85 1.94
4873 5170 2.627699 CGCCCCATAATGTATGCCTTTT 59.372 45.455 0.00 0.00 34.85 2.27
4874 5171 2.238521 CGCCCCATAATGTATGCCTTT 58.761 47.619 0.00 0.00 34.85 3.11
4875 5172 1.547675 CCGCCCCATAATGTATGCCTT 60.548 52.381 0.00 0.00 34.85 4.35
4876 5173 0.038166 CCGCCCCATAATGTATGCCT 59.962 55.000 0.00 0.00 34.85 4.75
4877 5174 0.037590 TCCGCCCCATAATGTATGCC 59.962 55.000 0.00 0.00 34.85 4.40
4878 5175 1.453155 CTCCGCCCCATAATGTATGC 58.547 55.000 0.00 0.00 34.85 3.14
4879 5176 1.340017 CCCTCCGCCCCATAATGTATG 60.340 57.143 0.00 0.00 35.94 2.39
4880 5177 0.991920 CCCTCCGCCCCATAATGTAT 59.008 55.000 0.00 0.00 0.00 2.29
4881 5178 0.104882 TCCCTCCGCCCCATAATGTA 60.105 55.000 0.00 0.00 0.00 2.29
4882 5179 0.772124 ATCCCTCCGCCCCATAATGT 60.772 55.000 0.00 0.00 0.00 2.71
4883 5180 0.405585 AATCCCTCCGCCCCATAATG 59.594 55.000 0.00 0.00 0.00 1.90
4884 5181 1.916181 CTAATCCCTCCGCCCCATAAT 59.084 52.381 0.00 0.00 0.00 1.28
4885 5182 1.132657 TCTAATCCCTCCGCCCCATAA 60.133 52.381 0.00 0.00 0.00 1.90
4886 5183 0.490017 TCTAATCCCTCCGCCCCATA 59.510 55.000 0.00 0.00 0.00 2.74
4887 5184 0.401395 TTCTAATCCCTCCGCCCCAT 60.401 55.000 0.00 0.00 0.00 4.00
4888 5185 0.622154 TTTCTAATCCCTCCGCCCCA 60.622 55.000 0.00 0.00 0.00 4.96
4889 5186 0.108774 CTTTCTAATCCCTCCGCCCC 59.891 60.000 0.00 0.00 0.00 5.80
4890 5187 0.535328 GCTTTCTAATCCCTCCGCCC 60.535 60.000 0.00 0.00 0.00 6.13
4891 5188 0.180406 TGCTTTCTAATCCCTCCGCC 59.820 55.000 0.00 0.00 0.00 6.13
4892 5189 1.139058 TCTGCTTTCTAATCCCTCCGC 59.861 52.381 0.00 0.00 0.00 5.54
4893 5190 3.070159 TCATCTGCTTTCTAATCCCTCCG 59.930 47.826 0.00 0.00 0.00 4.63
4894 5191 4.696479 TCATCTGCTTTCTAATCCCTCC 57.304 45.455 0.00 0.00 0.00 4.30
4895 5192 4.819088 GGTTCATCTGCTTTCTAATCCCTC 59.181 45.833 0.00 0.00 0.00 4.30
4896 5193 4.228210 TGGTTCATCTGCTTTCTAATCCCT 59.772 41.667 0.00 0.00 0.00 4.20
4897 5194 4.526970 TGGTTCATCTGCTTTCTAATCCC 58.473 43.478 0.00 0.00 0.00 3.85
4898 5195 7.992754 ATATGGTTCATCTGCTTTCTAATCC 57.007 36.000 0.00 0.00 0.00 3.01
4899 5196 8.651588 CGTATATGGTTCATCTGCTTTCTAATC 58.348 37.037 0.00 0.00 0.00 1.75
4904 5201 4.511454 TGCGTATATGGTTCATCTGCTTTC 59.489 41.667 0.00 0.00 0.00 2.62
4918 5215 4.876125 ACTGAGAGGATGTTGCGTATATG 58.124 43.478 0.00 0.00 0.00 1.78
4919 5216 5.334957 CGTACTGAGAGGATGTTGCGTATAT 60.335 44.000 0.00 0.00 0.00 0.86
4920 5217 4.024302 CGTACTGAGAGGATGTTGCGTATA 60.024 45.833 0.00 0.00 0.00 1.47
4921 5218 3.243101 CGTACTGAGAGGATGTTGCGTAT 60.243 47.826 0.00 0.00 0.00 3.06
4922 5219 2.096980 CGTACTGAGAGGATGTTGCGTA 59.903 50.000 0.00 0.00 0.00 4.42
4923 5220 1.135373 CGTACTGAGAGGATGTTGCGT 60.135 52.381 0.00 0.00 0.00 5.24
4924 5221 1.132453 TCGTACTGAGAGGATGTTGCG 59.868 52.381 0.00 0.00 0.00 4.85
4925 5222 2.531206 GTCGTACTGAGAGGATGTTGC 58.469 52.381 0.00 0.00 0.00 4.17
4926 5223 2.418976 TCGTCGTACTGAGAGGATGTTG 59.581 50.000 0.00 0.00 0.00 3.33
4927 5224 2.708051 TCGTCGTACTGAGAGGATGTT 58.292 47.619 0.00 0.00 0.00 2.71
4928 5225 2.398252 TCGTCGTACTGAGAGGATGT 57.602 50.000 0.00 0.00 0.00 3.06
4929 5226 2.678836 AGTTCGTCGTACTGAGAGGATG 59.321 50.000 3.50 0.00 33.35 3.51
4930 5227 2.988570 AGTTCGTCGTACTGAGAGGAT 58.011 47.619 3.50 0.00 33.35 3.24
4931 5228 2.469274 AGTTCGTCGTACTGAGAGGA 57.531 50.000 3.50 0.00 0.00 3.71
4932 5229 2.225963 ACAAGTTCGTCGTACTGAGAGG 59.774 50.000 5.21 0.00 0.00 3.69
4933 5230 3.539431 ACAAGTTCGTCGTACTGAGAG 57.461 47.619 5.21 0.00 0.00 3.20
4934 5231 6.726258 TTATACAAGTTCGTCGTACTGAGA 57.274 37.500 5.21 0.00 0.00 3.27
4935 5232 7.966157 AATTATACAAGTTCGTCGTACTGAG 57.034 36.000 5.21 4.53 0.00 3.35
4938 5235 9.241317 CCATAAATTATACAAGTTCGTCGTACT 57.759 33.333 0.00 0.00 0.00 2.73
4939 5236 8.000435 GCCATAAATTATACAAGTTCGTCGTAC 59.000 37.037 0.00 0.00 0.00 3.67
4940 5237 7.705752 TGCCATAAATTATACAAGTTCGTCGTA 59.294 33.333 0.00 0.00 0.00 3.43
4941 5238 6.535865 TGCCATAAATTATACAAGTTCGTCGT 59.464 34.615 0.00 0.00 0.00 4.34
4942 5239 6.939627 TGCCATAAATTATACAAGTTCGTCG 58.060 36.000 0.00 0.00 0.00 5.12
5009 5306 5.505173 AACTCTCTGTGTTCATGTTTTGG 57.495 39.130 0.00 0.00 0.00 3.28
5025 5322 3.514309 TGTTGGGCTAGGTAGAAACTCTC 59.486 47.826 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.