Multiple sequence alignment - TraesCS1B01G215600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G215600 chr1B 100.000 3491 0 0 1 3491 391072997 391069507 0.000000e+00 6447.0
1 TraesCS1B01G215600 chr1D 94.577 3522 134 16 4 3491 289780770 289777272 0.000000e+00 5393.0
2 TraesCS1B01G215600 chr1A 95.105 2758 109 11 738 3491 362196161 362193426 0.000000e+00 4322.0
3 TraesCS1B01G215600 chr1A 87.143 70 9 0 315 384 53322443 53322512 2.890000e-11 80.5
4 TraesCS1B01G215600 chr2B 82.500 280 41 7 1 276 249901287 249901012 4.500000e-59 239.0
5 TraesCS1B01G215600 chr2B 81.295 278 49 3 2 276 158628222 158627945 4.540000e-54 222.0
6 TraesCS1B01G215600 chr2B 100.000 28 0 0 719 746 254132420 254132447 6.000000e-03 52.8
7 TraesCS1B01G215600 chr2B 100.000 28 0 0 719 746 281934921 281934948 6.000000e-03 52.8
8 TraesCS1B01G215600 chr2D 81.949 277 48 2 2 276 555960360 555960084 2.100000e-57 233.0
9 TraesCS1B01G215600 chr2D 81.949 277 44 5 2 276 603133491 603133763 2.710000e-56 230.0
10 TraesCS1B01G215600 chr2D 85.714 77 10 1 314 389 603132644 603132720 2.890000e-11 80.5
11 TraesCS1B01G215600 chr2D 85.714 77 10 1 314 389 603133752 603133828 2.890000e-11 80.5
12 TraesCS1B01G215600 chr5D 81.949 277 42 7 3 276 509572846 509572575 9.750000e-56 228.0
13 TraesCS1B01G215600 chr7D 83.267 251 35 7 1 246 430923193 430922945 1.260000e-54 224.0
14 TraesCS1B01G215600 chr7D 81.362 279 47 5 2 276 269525402 269525679 4.540000e-54 222.0
15 TraesCS1B01G215600 chr3D 80.935 278 46 4 1 276 49567901 49568173 2.730000e-51 213.0
16 TraesCS1B01G215600 chr2A 92.405 79 6 0 315 393 389631339 389631261 2.850000e-21 113.0
17 TraesCS1B01G215600 chrUn 90.000 70 7 0 315 384 32258855 32258924 1.330000e-14 91.6
18 TraesCS1B01G215600 chr7B 88.732 71 8 0 314 384 664104783 664104853 1.730000e-13 87.9
19 TraesCS1B01G215600 chr7B 88.235 68 8 0 317 384 385919817 385919884 8.030000e-12 82.4
20 TraesCS1B01G215600 chr6A 84.810 79 12 0 315 393 315488337 315488259 2.890000e-11 80.5
21 TraesCS1B01G215600 chr6A 100.000 29 0 0 717 745 154040789 154040761 2.000000e-03 54.7
22 TraesCS1B01G215600 chr6A 100.000 28 0 0 719 746 73573361 73573334 6.000000e-03 52.8
23 TraesCS1B01G215600 chr6B 97.500 40 1 0 276 315 665685223 665685184 6.250000e-08 69.4
24 TraesCS1B01G215600 chr6B 100.000 28 0 0 719 746 130944141 130944114 6.000000e-03 52.8
25 TraesCS1B01G215600 chr4A 97.500 40 1 0 276 315 66744834 66744873 6.250000e-08 69.4
26 TraesCS1B01G215600 chr4A 100.000 30 0 0 719 748 684902305 684902276 4.870000e-04 56.5
27 TraesCS1B01G215600 chr4D 94.872 39 2 0 277 315 464518867 464518829 1.050000e-05 62.1
28 TraesCS1B01G215600 chr7A 100.000 28 0 0 719 746 610688125 610688152 6.000000e-03 52.8
29 TraesCS1B01G215600 chr3B 100.000 28 0 0 719 746 603601057 603601084 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G215600 chr1B 391069507 391072997 3490 True 6447 6447 100.000 1 3491 1 chr1B.!!$R1 3490
1 TraesCS1B01G215600 chr1D 289777272 289780770 3498 True 5393 5393 94.577 4 3491 1 chr1D.!!$R1 3487
2 TraesCS1B01G215600 chr1A 362193426 362196161 2735 True 4322 4322 95.105 738 3491 1 chr1A.!!$R1 2753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 581 0.035439 ATCACCCCGAATCAAGCGTT 60.035 50.000 0.00 0.0 0.0 4.84 F
657 674 1.417890 CCACCCGGAGAAGATTAGCAT 59.582 52.381 0.73 0.0 0.0 3.79 F
1903 1937 0.392193 CTGATGCGGCCAACTCTCTT 60.392 55.000 2.24 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1775 0.032130 GACGTGTGAGGTTGCTCTCA 59.968 55.0 0.0 1.84 41.03 3.27 R
2018 2052 1.276622 ACCTCACGGTCATAGGCTTT 58.723 50.0 0.0 0.00 40.27 3.51 R
3348 3383 0.459237 GAGATCCCACACAGCACGAG 60.459 60.0 0.0 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.735132 CCGCGTCGTGGTGGATGT 62.735 66.667 16.85 0.00 40.04 3.06
106 108 1.590147 GGGCTCCGACGAGAAAGAA 59.410 57.895 0.00 0.00 38.52 2.52
122 124 2.196742 AGAATAGGGCATGGGAGACA 57.803 50.000 0.00 0.00 0.00 3.41
135 137 2.037367 AGACAGCGGCTCCCTGTA 59.963 61.111 0.00 0.00 43.17 2.74
138 140 0.107654 GACAGCGGCTCCCTGTATTT 60.108 55.000 0.00 0.00 43.17 1.40
161 163 3.589881 GCCGGCTCATGTCCATGC 61.590 66.667 22.15 5.47 38.65 4.06
168 170 1.133976 GCTCATGTCCATGCCCTACTT 60.134 52.381 2.33 0.00 38.65 2.24
177 179 1.670811 CATGCCCTACTTTACCTTGCG 59.329 52.381 0.00 0.00 0.00 4.85
178 180 0.978151 TGCCCTACTTTACCTTGCGA 59.022 50.000 0.00 0.00 0.00 5.10
183 185 1.918609 CTACTTTACCTTGCGAGCGAC 59.081 52.381 0.00 0.00 0.00 5.19
196 198 2.280592 GCGACCGGACCAACACTT 60.281 61.111 9.46 0.00 0.00 3.16
211 213 0.036732 CACTTTAGGGAGTGCAGCCA 59.963 55.000 7.75 0.00 40.43 4.75
212 214 0.326264 ACTTTAGGGAGTGCAGCCAG 59.674 55.000 7.75 0.00 0.00 4.85
256 259 3.132863 GGACGAGCTCCGCTTAAAA 57.867 52.632 8.47 0.00 39.88 1.52
259 262 2.030579 GGACGAGCTCCGCTTAAAAATC 59.969 50.000 8.47 0.00 39.88 2.17
415 432 3.081133 CGTCGGTCAGATTTGCCG 58.919 61.111 11.23 11.23 41.92 5.69
418 435 0.721718 GTCGGTCAGATTTGCCGAAG 59.278 55.000 18.48 0.00 46.64 3.79
420 437 0.443869 CGGTCAGATTTGCCGAAGTG 59.556 55.000 11.84 0.00 42.64 3.16
440 457 1.861575 GCGGCTGTAGATGCTCTTAAC 59.138 52.381 0.00 0.00 0.00 2.01
441 458 2.474816 CGGCTGTAGATGCTCTTAACC 58.525 52.381 0.00 0.00 0.00 2.85
442 459 2.101582 CGGCTGTAGATGCTCTTAACCT 59.898 50.000 0.00 0.00 0.00 3.50
443 460 3.723260 GGCTGTAGATGCTCTTAACCTC 58.277 50.000 0.00 0.00 0.00 3.85
444 461 3.493524 GGCTGTAGATGCTCTTAACCTCC 60.494 52.174 0.00 0.00 0.00 4.30
445 462 3.133003 GCTGTAGATGCTCTTAACCTCCA 59.867 47.826 0.00 0.00 0.00 3.86
473 490 5.585844 TGGTTACGACACGATCTAACATCTA 59.414 40.000 0.00 0.00 0.00 1.98
527 544 1.608025 GCCACTTGAGGTTGACATCGA 60.608 52.381 0.00 0.00 0.00 3.59
550 567 0.462047 CGTGGGCTTCTGGTATCACC 60.462 60.000 0.00 0.00 39.22 4.02
553 570 1.146263 GGCTTCTGGTATCACCCCG 59.854 63.158 0.00 0.00 37.50 5.73
564 581 0.035439 ATCACCCCGAATCAAGCGTT 60.035 50.000 0.00 0.00 0.00 4.84
579 596 2.627945 AGCGTTGGCGAAAATGATAGA 58.372 42.857 0.00 0.00 46.35 1.98
654 671 3.297736 AGTACCACCCGGAGAAGATTAG 58.702 50.000 0.73 0.00 35.59 1.73
657 674 1.417890 CCACCCGGAGAAGATTAGCAT 59.582 52.381 0.73 0.00 0.00 3.79
703 720 6.474751 GGTTAACATACATCGAAGAGTACCAC 59.525 42.308 8.10 0.00 43.63 4.16
719 736 8.492415 AGAGTACCACCAAATGCTCTTATATA 57.508 34.615 0.00 0.00 30.12 0.86
720 737 9.105844 AGAGTACCACCAAATGCTCTTATATAT 57.894 33.333 0.00 0.00 30.12 0.86
753 770 4.390264 GGAGGGAGTATATTTCACTTGCC 58.610 47.826 0.00 0.00 0.00 4.52
993 1027 4.760047 CTTCCCACCTCGCACCCG 62.760 72.222 0.00 0.00 0.00 5.28
1046 1080 4.430765 ACGCGGCGACCCTACTTG 62.431 66.667 30.94 0.00 0.00 3.16
1191 1225 3.131478 GTCCATGGTTTCCGCCGG 61.131 66.667 12.58 0.00 0.00 6.13
1309 1343 2.103340 GCGCTCTTCGTCTCCCTC 59.897 66.667 0.00 0.00 41.07 4.30
1426 1460 2.042537 TCCGCCTCCTGCATCTCT 60.043 61.111 0.00 0.00 41.33 3.10
1579 1613 2.204136 TCCTGGGTCATGGTGGCT 60.204 61.111 0.00 0.00 0.00 4.75
1582 1616 2.858476 TGGGTCATGGTGGCTGGT 60.858 61.111 0.00 0.00 0.00 4.00
1741 1775 1.963515 GATTTCATATGGGCGCCCTTT 59.036 47.619 43.34 32.19 36.94 3.11
1756 1790 1.202806 CCCTTTGAGAGCAACCTCACA 60.203 52.381 3.43 0.00 42.33 3.58
1903 1937 0.392193 CTGATGCGGCCAACTCTCTT 60.392 55.000 2.24 0.00 0.00 2.85
2018 2052 3.063861 GCATATGAACGACACAATGCTGA 59.936 43.478 6.97 0.00 42.71 4.26
2118 2152 4.227134 CTCCCGGGGATGTGAGCG 62.227 72.222 23.50 0.00 0.00 5.03
2151 2185 1.066787 TGACGGGATGCATTACAACGA 60.067 47.619 0.00 0.00 0.00 3.85
2228 2262 4.569943 GCAACAAAGGATCTGACTAGTCA 58.430 43.478 23.80 23.80 38.06 3.41
2522 2556 4.952335 AGGGGAAAACAGATTGAGCAATAG 59.048 41.667 0.00 0.00 0.00 1.73
2690 2725 9.334947 CAATGTGATAAACCTGAGATGTATCTT 57.665 33.333 0.00 0.00 37.25 2.40
2724 2759 5.007136 GGCTGATGCTAAGATGACTGTAAAC 59.993 44.000 0.00 0.00 39.59 2.01
2741 2776 6.914757 ACTGTAAACTGTACTACAACGTCTTC 59.085 38.462 0.00 0.00 0.00 2.87
2821 2856 8.263640 AGTTATAATCCTATGCTGATGCTAAGG 58.736 37.037 0.00 0.00 40.64 2.69
2843 2878 4.030977 GGTGACTGTAAATTGTACTACGCG 59.969 45.833 3.53 3.53 0.00 6.01
2844 2879 4.618489 GTGACTGTAAATTGTACTACGCGT 59.382 41.667 19.17 19.17 0.00 6.01
2845 2880 4.853196 TGACTGTAAATTGTACTACGCGTC 59.147 41.667 18.63 0.56 0.00 5.19
2846 2881 5.051891 ACTGTAAATTGTACTACGCGTCT 57.948 39.130 18.63 4.47 0.00 4.18
2849 2884 6.421801 ACTGTAAATTGTACTACGCGTCTTTT 59.578 34.615 18.63 8.87 0.00 2.27
2850 2885 6.810286 TGTAAATTGTACTACGCGTCTTTTC 58.190 36.000 18.63 4.64 0.00 2.29
2851 2886 6.642131 TGTAAATTGTACTACGCGTCTTTTCT 59.358 34.615 18.63 0.00 0.00 2.52
2852 2887 6.535274 AAATTGTACTACGCGTCTTTTCTT 57.465 33.333 18.63 0.00 0.00 2.52
2853 2888 4.959631 TTGTACTACGCGTCTTTTCTTG 57.040 40.909 18.63 0.00 0.00 3.02
2854 2889 3.968649 TGTACTACGCGTCTTTTCTTGT 58.031 40.909 18.63 5.72 0.00 3.16
2855 2890 5.107109 TGTACTACGCGTCTTTTCTTGTA 57.893 39.130 18.63 4.73 0.00 2.41
2858 2893 5.362556 ACTACGCGTCTTTTCTTGTACTA 57.637 39.130 18.63 0.00 0.00 1.82
2952 2987 1.345741 ACTGTACTGCATGCTGACTGT 59.654 47.619 28.74 24.09 0.00 3.55
3004 3039 6.530120 TGCAGTGACTATTTTGGAAAGTAGA 58.470 36.000 8.24 0.00 33.80 2.59
3090 3125 4.899352 AATATATCGCTCTTTCTGCCCT 57.101 40.909 0.00 0.00 0.00 5.19
3113 3148 7.435192 CCCTTGAAGAAACACAATAGTTGTTTC 59.565 37.037 16.58 16.58 46.77 2.78
3143 3178 7.233962 TGTGTAGTCTTTGGTCTTCCATACTTA 59.766 37.037 0.00 0.00 43.91 2.24
3151 3186 4.841813 TGGTCTTCCATACTTACTGGAACA 59.158 41.667 0.73 0.00 45.56 3.18
3174 3209 7.518731 CAGCTTAAAACTTGCTGTTAAAACA 57.481 32.000 6.09 0.00 46.23 2.83
3348 3383 8.840321 TGGCAAATTCTCTTCTATACATAAAGC 58.160 33.333 0.00 0.00 0.00 3.51
3354 3389 6.439599 TCTCTTCTATACATAAAGCTCGTGC 58.560 40.000 0.07 0.07 40.05 5.34
3464 3499 8.988934 TGTTAGCAACATTCTGAAACTAACTAG 58.011 33.333 19.47 0.00 39.01 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.403814 TGATGGATCCGTCCTGAGAC 58.596 55.000 27.65 5.64 45.32 3.36
106 108 1.762522 CGCTGTCTCCCATGCCCTAT 61.763 60.000 0.00 0.00 0.00 2.57
122 124 1.144057 CGAAATACAGGGAGCCGCT 59.856 57.895 0.00 0.00 0.00 5.52
152 154 3.123273 AGGTAAAGTAGGGCATGGACAT 58.877 45.455 0.00 0.00 0.00 3.06
155 157 2.356741 GCAAGGTAAAGTAGGGCATGGA 60.357 50.000 0.00 0.00 0.00 3.41
157 159 1.670811 CGCAAGGTAAAGTAGGGCATG 59.329 52.381 0.00 0.00 0.00 4.06
161 163 1.653151 GCTCGCAAGGTAAAGTAGGG 58.347 55.000 0.00 0.00 38.47 3.53
168 170 2.126228 CGGTCGCTCGCAAGGTAA 60.126 61.111 0.00 0.00 38.47 2.85
177 179 2.710724 AAGTGTTGGTCCGGTCGCTC 62.711 60.000 0.00 0.00 0.00 5.03
178 180 2.319890 AAAGTGTTGGTCCGGTCGCT 62.320 55.000 0.00 0.00 0.00 4.93
183 185 0.688487 TCCCTAAAGTGTTGGTCCGG 59.312 55.000 0.00 0.00 0.00 5.14
196 198 2.671070 GCTGGCTGCACTCCCTAA 59.329 61.111 11.80 0.00 42.31 2.69
211 213 0.598562 CGTATCCATGTCTAGCGGCT 59.401 55.000 7.98 7.98 0.00 5.52
212 214 0.388649 CCGTATCCATGTCTAGCGGC 60.389 60.000 0.00 0.00 0.00 6.53
415 432 0.460987 AGCATCTACAGCCGCACTTC 60.461 55.000 0.00 0.00 0.00 3.01
418 435 3.711348 GAGCATCTACAGCCGCAC 58.289 61.111 0.00 0.00 0.00 5.34
426 443 7.017945 CCATCATGGAGGTTAAGAGCATCTAC 61.018 46.154 0.00 0.00 43.30 2.59
427 444 5.012458 CCATCATGGAGGTTAAGAGCATCTA 59.988 44.000 0.00 0.00 43.30 1.98
440 457 2.550978 GTGTCGTAACCATCATGGAGG 58.449 52.381 11.90 0.00 40.96 4.30
441 458 2.159296 TCGTGTCGTAACCATCATGGAG 60.159 50.000 11.90 0.00 40.96 3.86
442 459 1.819903 TCGTGTCGTAACCATCATGGA 59.180 47.619 11.90 0.00 40.96 3.41
443 460 2.287393 TCGTGTCGTAACCATCATGG 57.713 50.000 0.54 0.54 45.02 3.66
444 461 3.706698 AGATCGTGTCGTAACCATCATG 58.293 45.455 0.00 0.00 0.00 3.07
445 462 5.163591 TGTTAGATCGTGTCGTAACCATCAT 60.164 40.000 0.00 0.00 0.00 2.45
473 490 2.029244 CGCAACGAATTAATGTCTCGCT 59.971 45.455 7.72 0.00 36.03 4.93
527 544 0.617820 ATACCAGAAGCCCACGACCT 60.618 55.000 0.00 0.00 0.00 3.85
550 567 2.485122 GCCAACGCTTGATTCGGG 59.515 61.111 0.15 0.00 0.00 5.14
553 570 2.044888 TTTTCGCCAACGCTTGATTC 57.955 45.000 0.15 0.00 39.84 2.52
564 581 3.996363 CGATCCATCTATCATTTTCGCCA 59.004 43.478 0.00 0.00 0.00 5.69
626 643 2.356780 CCGGGTGGTACTCCTGTCC 61.357 68.421 0.00 0.00 46.14 4.02
628 645 1.305046 CTCCGGGTGGTACTCCTGT 60.305 63.158 0.00 0.00 46.14 4.00
630 647 0.324460 CTTCTCCGGGTGGTACTCCT 60.324 60.000 0.00 0.00 42.45 3.69
657 674 2.743664 CAGGAGCATCACATGTTTTCGA 59.256 45.455 0.00 0.00 36.25 3.71
721 738 8.711170 TGAAATATACTCCCTCCGTAAAGAAAT 58.289 33.333 0.00 0.00 0.00 2.17
722 739 7.983484 GTGAAATATACTCCCTCCGTAAAGAAA 59.017 37.037 0.00 0.00 0.00 2.52
729 746 4.443034 GCAAGTGAAATATACTCCCTCCGT 60.443 45.833 0.00 0.00 0.00 4.69
730 747 4.058817 GCAAGTGAAATATACTCCCTCCG 58.941 47.826 0.00 0.00 0.00 4.63
993 1027 4.295199 GGTGGTGGGGTTGGGGTC 62.295 72.222 0.00 0.00 0.00 4.46
1013 1047 2.598467 GTGGTGTGGGTTGGTGGA 59.402 61.111 0.00 0.00 0.00 4.02
1426 1460 4.961511 GACACGCGGTGCAGGACA 62.962 66.667 12.47 0.00 36.98 4.02
1546 1580 2.743928 GAGCCGTTGAGCAGGGTG 60.744 66.667 0.00 0.00 38.50 4.61
1741 1775 0.032130 GACGTGTGAGGTTGCTCTCA 59.968 55.000 0.00 1.84 41.03 3.27
2018 2052 1.276622 ACCTCACGGTCATAGGCTTT 58.723 50.000 0.00 0.00 40.27 3.51
2118 2152 2.177531 CGTCAGCTGTGCATTGCC 59.822 61.111 14.67 0.00 0.00 4.52
2151 2185 1.824852 TGACAGCATCATAGACCACGT 59.175 47.619 0.00 0.00 29.99 4.49
2228 2262 2.025887 CACCTGCTTCAAGAACCCCTAT 60.026 50.000 0.00 0.00 0.00 2.57
2255 2289 3.562182 GAACCAAAAGAAGAGGGGTTGA 58.438 45.455 0.00 0.00 41.65 3.18
2548 2582 2.296073 AATAAAACCTCCAACCGCCA 57.704 45.000 0.00 0.00 0.00 5.69
2552 2586 6.844097 TGACCAATAATAAAACCTCCAACC 57.156 37.500 0.00 0.00 0.00 3.77
2690 2725 5.744171 TCTTAGCATCAGCCTGACATTTAA 58.256 37.500 0.00 0.00 43.56 1.52
2724 2759 5.759963 ACAAGAGAAGACGTTGTAGTACAG 58.240 41.667 2.68 0.00 32.63 2.74
2741 2776 5.979288 ACTACTGGTGGTAAGTACAAGAG 57.021 43.478 0.00 0.00 0.00 2.85
2821 2856 4.618489 ACGCGTAGTACAATTTACAGTCAC 59.382 41.667 11.67 0.00 0.00 3.67
2849 2884 9.610705 CTACTGGTGATAAGTACTAGTACAAGA 57.389 37.037 29.87 17.06 39.94 3.02
2850 2885 9.393512 ACTACTGGTGATAAGTACTAGTACAAG 57.606 37.037 29.87 12.97 39.94 3.16
2851 2886 9.745018 AACTACTGGTGATAAGTACTAGTACAA 57.255 33.333 29.87 19.68 39.94 2.41
2852 2887 9.170734 CAACTACTGGTGATAAGTACTAGTACA 57.829 37.037 29.87 14.42 39.94 2.90
2853 2888 9.388506 TCAACTACTGGTGATAAGTACTAGTAC 57.611 37.037 23.03 23.03 39.94 2.73
2854 2889 9.610705 CTCAACTACTGGTGATAAGTACTAGTA 57.389 37.037 0.00 0.00 39.94 1.82
2855 2890 7.556996 CCTCAACTACTGGTGATAAGTACTAGT 59.443 40.741 0.00 0.00 41.76 2.57
2858 2893 5.127356 GCCTCAACTACTGGTGATAAGTACT 59.873 44.000 0.00 0.00 0.00 2.73
2886 2921 7.328277 TCATTCCAAATATTCCAACGTTAGG 57.672 36.000 0.00 5.42 0.00 2.69
2952 2987 4.988540 GCGAATGTGTAACCTCATGCTATA 59.011 41.667 0.00 0.00 34.36 1.31
3004 3039 9.878599 CCTTTTTCTCGCGATAATTAATGTAAT 57.121 29.630 10.36 0.00 0.00 1.89
3019 3054 4.889832 ATGTGATCATCCTTTTTCTCGC 57.110 40.909 0.00 0.00 0.00 5.03
3066 3101 6.064717 AGGGCAGAAAGAGCGATATATTTTT 58.935 36.000 0.00 0.00 0.00 1.94
3067 3102 5.625150 AGGGCAGAAAGAGCGATATATTTT 58.375 37.500 0.00 0.00 0.00 1.82
3090 3125 8.062065 AGGAAACAACTATTGTGTTTCTTCAA 57.938 30.769 22.35 0.00 46.08 2.69
3113 3148 4.515567 GGAAGACCAAAGACTACACAAAGG 59.484 45.833 0.00 0.00 35.97 3.11
3143 3178 3.954258 AGCAAGTTTTAAGCTGTTCCAGT 59.046 39.130 0.00 0.00 37.20 4.00
3151 3186 9.244799 GTATGTTTTAACAGCAAGTTTTAAGCT 57.755 29.630 1.50 0.00 43.04 3.74
3156 3191 9.816354 AGATTGTATGTTTTAACAGCAAGTTTT 57.184 25.926 15.45 4.90 43.04 2.43
3294 3329 6.313905 ACTGAAAGATAATGAACCGTTAGCTG 59.686 38.462 0.00 0.00 32.85 4.24
3301 3336 5.572896 GCCAAAACTGAAAGATAATGAACCG 59.427 40.000 0.00 0.00 37.43 4.44
3348 3383 0.459237 GAGATCCCACACAGCACGAG 60.459 60.000 0.00 0.00 0.00 4.18
3354 3389 5.047448 CCATCATAGTAGAGATCCCACACAG 60.047 48.000 0.00 0.00 0.00 3.66
3361 3396 7.069331 CCAGGATAACCATCATAGTAGAGATCC 59.931 44.444 0.00 0.00 38.94 3.36
3464 3499 6.599638 ACCTTTACAAAGATTGACCATCTAGC 59.400 38.462 3.25 0.00 41.93 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.