Multiple sequence alignment - TraesCS1B01G214900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G214900 chr1B 100.000 3296 0 0 1 3296 389979148 389982443 0.000000e+00 6087.0
1 TraesCS1B01G214900 chr1A 91.791 2887 113 53 15 2823 360008460 360011300 0.000000e+00 3904.0
2 TraesCS1B01G214900 chr1A 95.918 98 2 2 2818 2915 360011695 360011790 1.220000e-34 158.0
3 TraesCS1B01G214900 chr1D 94.105 2358 81 28 507 2830 288545345 288547678 0.000000e+00 3531.0
4 TraesCS1B01G214900 chr1D 88.247 502 28 16 15 501 288544812 288545297 3.690000e-159 571.0
5 TraesCS1B01G214900 chr1D 75.431 232 46 11 1214 1438 467611838 467611611 5.820000e-18 102.0
6 TraesCS1B01G214900 chr1D 100.000 47 0 0 2869 2915 288548000 288548046 1.630000e-13 87.9
7 TraesCS1B01G214900 chr5A 91.099 382 32 2 2916 3296 139084727 139085107 1.750000e-142 516.0
8 TraesCS1B01G214900 chr5A 89.182 379 40 1 2919 3296 139204139 139204517 3.850000e-129 472.0
9 TraesCS1B01G214900 chr5A 91.852 135 11 0 3162 3296 133018910 133019044 4.340000e-44 189.0
10 TraesCS1B01G214900 chr5A 80.282 142 26 2 1100 1240 679722225 679722365 4.500000e-19 106.0
11 TraesCS1B01G214900 chr3B 86.559 372 48 2 2920 3291 734195213 734195582 3.060000e-110 409.0
12 TraesCS1B01G214900 chr3B 85.124 363 46 7 2916 3274 410795872 410796230 6.720000e-97 364.0
13 TraesCS1B01G214900 chr7B 78.049 205 42 3 1195 1399 200022365 200022566 3.450000e-25 126.0
14 TraesCS1B01G214900 chr7D 77.561 205 43 3 1195 1399 229769541 229769742 1.610000e-23 121.0
15 TraesCS1B01G214900 chr2D 77.561 205 43 3 1201 1405 324015918 324015717 1.610000e-23 121.0
16 TraesCS1B01G214900 chr2B 77.561 205 43 3 1201 1405 392530381 392530180 1.610000e-23 121.0
17 TraesCS1B01G214900 chr7A 77.073 205 44 3 1195 1399 241367121 241367322 7.470000e-22 115.0
18 TraesCS1B01G214900 chr7A 78.659 164 35 0 1247 1410 646585125 646584962 3.480000e-20 110.0
19 TraesCS1B01G214900 chr4D 80.420 143 24 4 1100 1240 498906599 498906739 4.500000e-19 106.0
20 TraesCS1B01G214900 chr4B 80.420 143 24 4 1100 1240 641407786 641407926 4.500000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G214900 chr1B 389979148 389982443 3295 False 6087.000000 6087 100.000000 1 3296 1 chr1B.!!$F1 3295
1 TraesCS1B01G214900 chr1A 360008460 360011790 3330 False 2031.000000 3904 93.854500 15 2915 2 chr1A.!!$F1 2900
2 TraesCS1B01G214900 chr1D 288544812 288548046 3234 False 1396.633333 3531 94.117333 15 2915 3 chr1D.!!$F1 2900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 526 0.041663 ATCGTCCAAACAACAACGCG 60.042 50.0 3.53 3.53 35.22 6.01 F
694 774 0.388659 TGCATGCAGGTGAAAACACC 59.611 50.0 18.46 10.91 45.31 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1712 0.107703 GGACACAGATGGCGGATCAA 60.108 55.0 0.00 0.00 32.81 2.57 R
2378 2514 0.657840 GCTAAATGCTAGCACGGGTG 59.342 55.0 22.07 10.59 40.14 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.415374 TCGTTTCGTTCTAGCTGTGC 58.585 50.000 0.00 0.00 0.00 4.57
122 124 3.701040 TGCATGCATCTCTACACTGACTA 59.299 43.478 18.46 0.00 0.00 2.59
134 141 3.169099 ACACTGACTAGATGGAGCTTGT 58.831 45.455 0.00 0.00 0.00 3.16
160 167 1.490490 AGGAATCGGGATTTGCTAGCA 59.510 47.619 14.93 14.93 0.00 3.49
161 168 2.107204 AGGAATCGGGATTTGCTAGCAT 59.893 45.455 20.13 3.92 0.00 3.79
247 264 5.762218 GGACACAGCAGCATCTAAAATCTAT 59.238 40.000 0.00 0.00 0.00 1.98
393 413 7.684937 ACTACGTACTACAAATCTCACTTCT 57.315 36.000 0.00 0.00 0.00 2.85
399 419 6.031751 ACTACAAATCTCACTTCTGGAGAC 57.968 41.667 0.00 0.00 43.65 3.36
408 428 3.383505 TCACTTCTGGAGACGAACAAGAA 59.616 43.478 0.00 0.00 0.00 2.52
417 437 3.589988 AGACGAACAAGAATACCAGCTG 58.410 45.455 6.78 6.78 0.00 4.24
475 496 2.105477 AGTCACATTCAGTCTTGGCAGT 59.895 45.455 0.00 0.00 0.00 4.40
476 497 3.324846 AGTCACATTCAGTCTTGGCAGTA 59.675 43.478 0.00 0.00 0.00 2.74
477 498 4.065088 GTCACATTCAGTCTTGGCAGTAA 58.935 43.478 0.00 0.00 0.00 2.24
478 499 4.697352 GTCACATTCAGTCTTGGCAGTAAT 59.303 41.667 0.00 0.00 0.00 1.89
505 526 0.041663 ATCGTCCAAACAACAACGCG 60.042 50.000 3.53 3.53 35.22 6.01
668 735 2.106683 GGGAATCCACGGCTTGACG 61.107 63.158 0.09 0.00 40.31 4.35
693 773 1.774639 CTGCATGCAGGTGAAAACAC 58.225 50.000 35.39 0.00 40.17 3.32
694 774 0.388659 TGCATGCAGGTGAAAACACC 59.611 50.000 18.46 10.91 45.31 4.16
716 804 4.519437 TGCCGCAGATCTCGCAGG 62.519 66.667 14.69 15.47 0.00 4.85
791 879 3.133003 ACTCTCTCCACCACATATTTCCG 59.867 47.826 0.00 0.00 0.00 4.30
793 881 1.134220 TCTCCACCACATATTTCCGCC 60.134 52.381 0.00 0.00 0.00 6.13
815 903 3.219788 AACCCTTTTCCCCCTCCGC 62.220 63.158 0.00 0.00 0.00 5.54
816 904 4.796495 CCCTTTTCCCCCTCCGCG 62.796 72.222 0.00 0.00 0.00 6.46
863 956 3.463704 AGATTCCCCTTAATCCCTCCAAC 59.536 47.826 0.00 0.00 36.68 3.77
870 963 4.397103 CCCTTAATCCCTCCAACGTTTAAC 59.603 45.833 0.00 0.00 0.00 2.01
872 965 3.512219 AATCCCTCCAACGTTTAACCA 57.488 42.857 0.00 0.00 0.00 3.67
876 969 4.983053 TCCCTCCAACGTTTAACCATAAA 58.017 39.130 0.00 0.00 0.00 1.40
982 1090 4.007644 CCACTGCCACCAGAGCGA 62.008 66.667 0.00 0.00 41.77 4.93
983 1091 2.267006 CACTGCCACCAGAGCGAT 59.733 61.111 0.00 0.00 41.77 4.58
984 1092 1.812922 CACTGCCACCAGAGCGATC 60.813 63.158 0.00 0.00 41.77 3.69
1448 1568 1.335872 GCTGGTACGTGCAAAGCAAAT 60.336 47.619 20.41 0.00 41.47 2.32
1493 1620 6.648725 GCTTTAATCCTGCATTTTGTGGTTAA 59.351 34.615 0.00 0.00 0.00 2.01
1494 1621 7.334171 GCTTTAATCCTGCATTTTGTGGTTAAT 59.666 33.333 0.00 0.00 0.00 1.40
1495 1622 9.218440 CTTTAATCCTGCATTTTGTGGTTAATT 57.782 29.630 0.00 0.00 0.00 1.40
1580 1712 8.467598 TCAGAATCTCAGTACGTAAAGCTTATT 58.532 33.333 0.00 0.00 0.00 1.40
1586 1718 7.705325 TCTCAGTACGTAAAGCTTATTTGATCC 59.295 37.037 0.00 0.00 0.00 3.36
1598 1730 1.737838 TTTGATCCGCCATCTGTGTC 58.262 50.000 0.00 0.00 31.92 3.67
1718 1854 0.886043 TGCTGATGGTGACTGTGTGC 60.886 55.000 0.00 0.00 0.00 4.57
2235 2371 0.033796 CTGCCATGGTCAAGATGGGT 60.034 55.000 14.67 0.00 40.80 4.51
2338 2474 5.106876 TGCATCAAGGATCATCTTTCTCA 57.893 39.130 0.00 0.00 0.00 3.27
2361 2497 5.607939 TTTAGAAGAGTGGCGATGGATTA 57.392 39.130 0.00 0.00 0.00 1.75
2378 2514 4.142271 TGGATTAATTTGGATTGGACGTGC 60.142 41.667 0.00 0.00 0.00 5.34
2531 2675 3.254892 GCTACTACCAGCTTTGTGAGTC 58.745 50.000 0.00 0.00 38.57 3.36
2659 2827 5.276678 CCATCAATCGAAGCATGAAAAATGC 60.277 40.000 0.00 2.07 44.85 3.56
2667 2835 3.841643 AGCATGAAAAATGCCTTTCGAG 58.158 40.909 6.69 0.00 45.59 4.04
2808 2976 0.105778 TTGTCATCACCTCACGCACA 59.894 50.000 0.00 0.00 0.00 4.57
2812 2980 0.879839 CATCACCTCACGCACACACA 60.880 55.000 0.00 0.00 0.00 3.72
2823 2991 1.000827 CGCACACACACTCTCTCTCTT 60.001 52.381 0.00 0.00 0.00 2.85
2825 2993 3.462021 GCACACACACTCTCTCTCTTTT 58.538 45.455 0.00 0.00 0.00 2.27
2826 2994 3.492756 GCACACACACTCTCTCTCTTTTC 59.507 47.826 0.00 0.00 0.00 2.29
2827 2995 4.739137 GCACACACACTCTCTCTCTTTTCT 60.739 45.833 0.00 0.00 0.00 2.52
2828 2996 4.981674 CACACACACTCTCTCTCTTTTCTC 59.018 45.833 0.00 0.00 0.00 2.87
2829 2997 4.892934 ACACACACTCTCTCTCTTTTCTCT 59.107 41.667 0.00 0.00 0.00 3.10
2831 2999 6.127196 ACACACACTCTCTCTCTTTTCTCTTT 60.127 38.462 0.00 0.00 0.00 2.52
2834 3002 6.423604 CACACTCTCTCTCTTTTCTCTTTTCC 59.576 42.308 0.00 0.00 0.00 3.13
2835 3003 6.326323 ACACTCTCTCTCTTTTCTCTTTTCCT 59.674 38.462 0.00 0.00 0.00 3.36
2916 3482 6.718454 CTCGTCATGATTCTGAAGAGTTTT 57.282 37.500 0.00 0.00 42.90 2.43
2917 3483 7.818493 CTCGTCATGATTCTGAAGAGTTTTA 57.182 36.000 0.00 0.00 42.90 1.52
2918 3484 8.417780 CTCGTCATGATTCTGAAGAGTTTTAT 57.582 34.615 0.00 0.00 42.90 1.40
2919 3485 8.777865 TCGTCATGATTCTGAAGAGTTTTATT 57.222 30.769 0.00 0.00 31.41 1.40
2920 3486 9.219603 TCGTCATGATTCTGAAGAGTTTTATTT 57.780 29.630 0.00 0.00 31.41 1.40
2921 3487 9.831737 CGTCATGATTCTGAAGAGTTTTATTTT 57.168 29.630 0.00 0.00 0.00 1.82
2946 3512 2.661866 GAATACGCGCGGAGGCAT 60.662 61.111 35.22 14.64 39.92 4.40
2947 3513 1.372499 GAATACGCGCGGAGGCATA 60.372 57.895 35.22 16.57 39.92 3.14
2948 3514 0.736325 GAATACGCGCGGAGGCATAT 60.736 55.000 35.22 18.20 39.92 1.78
2949 3515 0.736325 AATACGCGCGGAGGCATATC 60.736 55.000 35.22 0.00 39.92 1.63
2950 3516 1.873270 ATACGCGCGGAGGCATATCA 61.873 55.000 35.22 5.61 39.92 2.15
2951 3517 1.873270 TACGCGCGGAGGCATATCAT 61.873 55.000 35.22 10.75 39.92 2.45
2952 3518 2.029288 CGCGCGGAGGCATATCATT 61.029 57.895 24.84 0.00 39.92 2.57
2953 3519 1.790387 GCGCGGAGGCATATCATTC 59.210 57.895 8.83 0.00 39.92 2.67
2954 3520 1.639298 GCGCGGAGGCATATCATTCC 61.639 60.000 8.83 0.00 39.92 3.01
2955 3521 0.320683 CGCGGAGGCATATCATTCCA 60.321 55.000 0.00 0.00 39.92 3.53
2956 3522 1.676916 CGCGGAGGCATATCATTCCAT 60.677 52.381 0.00 0.00 39.92 3.41
2957 3523 2.440409 GCGGAGGCATATCATTCCATT 58.560 47.619 0.00 0.00 39.62 3.16
2958 3524 2.163010 GCGGAGGCATATCATTCCATTG 59.837 50.000 0.00 0.00 39.62 2.82
2959 3525 2.751259 CGGAGGCATATCATTCCATTGG 59.249 50.000 0.00 0.00 0.00 3.16
2960 3526 3.771216 GGAGGCATATCATTCCATTGGT 58.229 45.455 1.86 0.00 0.00 3.67
2961 3527 4.565444 CGGAGGCATATCATTCCATTGGTA 60.565 45.833 1.86 0.00 0.00 3.25
2962 3528 4.946157 GGAGGCATATCATTCCATTGGTAG 59.054 45.833 1.86 0.00 0.00 3.18
2963 3529 5.280676 GGAGGCATATCATTCCATTGGTAGA 60.281 44.000 1.86 0.04 0.00 2.59
2964 3530 6.398655 AGGCATATCATTCCATTGGTAGAT 57.601 37.500 1.86 7.41 0.00 1.98
2965 3531 7.365921 GGAGGCATATCATTCCATTGGTAGATA 60.366 40.741 1.86 9.19 0.00 1.98
2966 3532 7.571919 AGGCATATCATTCCATTGGTAGATAG 58.428 38.462 1.86 5.30 0.00 2.08
2967 3533 6.769822 GGCATATCATTCCATTGGTAGATAGG 59.230 42.308 15.41 15.41 0.00 2.57
2968 3534 7.365921 GGCATATCATTCCATTGGTAGATAGGA 60.366 40.741 20.02 6.56 0.00 2.94
2969 3535 7.714377 GCATATCATTCCATTGGTAGATAGGAG 59.286 40.741 20.02 13.18 0.00 3.69
2970 3536 8.985922 CATATCATTCCATTGGTAGATAGGAGA 58.014 37.037 14.98 1.37 0.00 3.71
2971 3537 6.924913 TCATTCCATTGGTAGATAGGAGAG 57.075 41.667 1.86 0.00 0.00 3.20
2972 3538 6.624297 TCATTCCATTGGTAGATAGGAGAGA 58.376 40.000 1.86 0.00 0.00 3.10
2973 3539 7.075797 TCATTCCATTGGTAGATAGGAGAGAA 58.924 38.462 1.86 0.00 0.00 2.87
2974 3540 7.568738 TCATTCCATTGGTAGATAGGAGAGAAA 59.431 37.037 1.86 0.00 0.00 2.52
2975 3541 7.749377 TTCCATTGGTAGATAGGAGAGAAAA 57.251 36.000 1.86 0.00 0.00 2.29
2976 3542 7.125792 TCCATTGGTAGATAGGAGAGAAAAC 57.874 40.000 1.86 0.00 0.00 2.43
2977 3543 6.672218 TCCATTGGTAGATAGGAGAGAAAACA 59.328 38.462 1.86 0.00 0.00 2.83
2978 3544 7.182026 TCCATTGGTAGATAGGAGAGAAAACAA 59.818 37.037 1.86 0.00 0.00 2.83
2979 3545 7.497249 CCATTGGTAGATAGGAGAGAAAACAAG 59.503 40.741 0.00 0.00 0.00 3.16
2980 3546 6.546428 TGGTAGATAGGAGAGAAAACAAGG 57.454 41.667 0.00 0.00 0.00 3.61
2981 3547 5.425539 TGGTAGATAGGAGAGAAAACAAGGG 59.574 44.000 0.00 0.00 0.00 3.95
2982 3548 5.425862 GGTAGATAGGAGAGAAAACAAGGGT 59.574 44.000 0.00 0.00 0.00 4.34
2983 3549 6.070136 GGTAGATAGGAGAGAAAACAAGGGTT 60.070 42.308 0.00 0.00 39.43 4.11
2985 3551 6.241645 AGATAGGAGAGAAAACAAGGGTTTG 58.758 40.000 0.00 0.00 46.20 2.93
2987 3553 3.954258 AGGAGAGAAAACAAGGGTTTGTG 59.046 43.478 0.00 0.00 46.54 3.33
2988 3554 3.068165 GGAGAGAAAACAAGGGTTTGTGG 59.932 47.826 0.00 0.00 46.54 4.17
2989 3555 3.699538 GAGAGAAAACAAGGGTTTGTGGT 59.300 43.478 0.00 0.00 46.54 4.16
2990 3556 4.093743 AGAGAAAACAAGGGTTTGTGGTT 58.906 39.130 0.00 0.00 46.54 3.67
2991 3557 5.265989 AGAGAAAACAAGGGTTTGTGGTTA 58.734 37.500 0.00 0.00 46.54 2.85
2992 3558 5.126545 AGAGAAAACAAGGGTTTGTGGTTAC 59.873 40.000 0.00 0.00 46.54 2.50
2993 3559 4.160814 AGAAAACAAGGGTTTGTGGTTACC 59.839 41.667 0.00 0.00 46.54 2.85
3004 3570 3.448469 TGGTTACCCCAAAGGCTTG 57.552 52.632 0.00 0.00 41.50 4.01
3005 3571 0.854218 TGGTTACCCCAAAGGCTTGA 59.146 50.000 0.00 0.00 41.50 3.02
3006 3572 1.218196 TGGTTACCCCAAAGGCTTGAA 59.782 47.619 0.00 0.00 41.50 2.69
3007 3573 1.616865 GGTTACCCCAAAGGCTTGAAC 59.383 52.381 0.00 0.00 40.58 3.18
3008 3574 2.312390 GTTACCCCAAAGGCTTGAACA 58.688 47.619 0.00 0.00 40.58 3.18
3009 3575 2.696187 GTTACCCCAAAGGCTTGAACAA 59.304 45.455 0.00 0.00 40.58 2.83
3010 3576 1.119684 ACCCCAAAGGCTTGAACAAC 58.880 50.000 0.00 0.00 40.58 3.32
3011 3577 1.342975 ACCCCAAAGGCTTGAACAACT 60.343 47.619 0.00 0.00 40.58 3.16
3012 3578 2.091555 ACCCCAAAGGCTTGAACAACTA 60.092 45.455 0.00 0.00 40.58 2.24
3013 3579 2.558359 CCCCAAAGGCTTGAACAACTAG 59.442 50.000 0.00 0.00 34.14 2.57
3014 3580 2.558359 CCCAAAGGCTTGAACAACTAGG 59.442 50.000 0.00 0.00 34.14 3.02
3015 3581 2.558359 CCAAAGGCTTGAACAACTAGGG 59.442 50.000 0.00 0.00 34.14 3.53
3016 3582 1.911057 AAGGCTTGAACAACTAGGGC 58.089 50.000 0.00 0.00 0.00 5.19
3017 3583 0.321653 AGGCTTGAACAACTAGGGCG 60.322 55.000 0.00 0.00 0.00 6.13
3018 3584 1.502190 GCTTGAACAACTAGGGCGC 59.498 57.895 0.00 0.00 0.00 6.53
3019 3585 1.923227 GCTTGAACAACTAGGGCGCC 61.923 60.000 21.18 21.18 0.00 6.53
3020 3586 0.321653 CTTGAACAACTAGGGCGCCT 60.322 55.000 28.56 15.07 37.71 5.52
3021 3587 0.109723 TTGAACAACTAGGGCGCCTT 59.890 50.000 28.56 23.35 34.61 4.35
3022 3588 0.321298 TGAACAACTAGGGCGCCTTC 60.321 55.000 28.56 19.98 34.61 3.46
3023 3589 0.321298 GAACAACTAGGGCGCCTTCA 60.321 55.000 28.56 10.76 34.61 3.02
3024 3590 0.109723 AACAACTAGGGCGCCTTCAA 59.890 50.000 28.56 3.03 34.61 2.69
3025 3591 0.321653 ACAACTAGGGCGCCTTCAAG 60.322 55.000 28.56 16.87 34.61 3.02
3026 3592 1.026718 CAACTAGGGCGCCTTCAAGG 61.027 60.000 28.56 12.38 38.80 3.61
3027 3593 1.489560 AACTAGGGCGCCTTCAAGGT 61.490 55.000 28.56 10.20 37.80 3.50
3028 3594 1.299976 CTAGGGCGCCTTCAAGGTT 59.700 57.895 28.56 4.56 37.80 3.50
3029 3595 0.539986 CTAGGGCGCCTTCAAGGTTA 59.460 55.000 28.56 0.00 37.80 2.85
3030 3596 0.251073 TAGGGCGCCTTCAAGGTTAC 59.749 55.000 28.56 4.97 37.80 2.50
3031 3597 2.044555 GGGCGCCTTCAAGGTTACC 61.045 63.158 28.56 4.15 37.80 2.85
3032 3598 1.302993 GGCGCCTTCAAGGTTACCA 60.303 57.895 22.15 0.00 37.80 3.25
3033 3599 0.891904 GGCGCCTTCAAGGTTACCAA 60.892 55.000 22.15 0.00 37.80 3.67
3034 3600 1.173913 GCGCCTTCAAGGTTACCAAT 58.826 50.000 5.03 0.00 37.80 3.16
3035 3601 1.135402 GCGCCTTCAAGGTTACCAATG 60.135 52.381 5.03 2.30 37.80 2.82
3036 3602 2.432444 CGCCTTCAAGGTTACCAATGA 58.568 47.619 5.03 4.94 37.80 2.57
3037 3603 2.420022 CGCCTTCAAGGTTACCAATGAG 59.580 50.000 5.03 0.00 37.80 2.90
3038 3604 2.164422 GCCTTCAAGGTTACCAATGAGC 59.836 50.000 5.03 5.11 37.80 4.26
3039 3605 3.420893 CCTTCAAGGTTACCAATGAGCA 58.579 45.455 3.51 0.00 0.00 4.26
3040 3606 4.019174 CCTTCAAGGTTACCAATGAGCAT 58.981 43.478 3.51 0.00 0.00 3.79
3041 3607 5.192927 CCTTCAAGGTTACCAATGAGCATA 58.807 41.667 3.51 0.00 0.00 3.14
3042 3608 5.297776 CCTTCAAGGTTACCAATGAGCATAG 59.702 44.000 3.51 2.46 0.00 2.23
3043 3609 4.780815 TCAAGGTTACCAATGAGCATAGG 58.219 43.478 3.51 0.00 0.00 2.57
3044 3610 4.473196 TCAAGGTTACCAATGAGCATAGGA 59.527 41.667 3.51 0.00 0.00 2.94
3045 3611 4.696479 AGGTTACCAATGAGCATAGGAG 57.304 45.455 3.51 0.00 0.00 3.69
3046 3612 4.298626 AGGTTACCAATGAGCATAGGAGA 58.701 43.478 3.51 0.00 0.00 3.71
3047 3613 4.721776 AGGTTACCAATGAGCATAGGAGAA 59.278 41.667 3.51 0.00 0.00 2.87
3048 3614 5.059833 GGTTACCAATGAGCATAGGAGAAG 58.940 45.833 0.00 0.00 0.00 2.85
3049 3615 3.853355 ACCAATGAGCATAGGAGAAGG 57.147 47.619 0.00 0.00 0.00 3.46
3050 3616 2.441001 ACCAATGAGCATAGGAGAAGGG 59.559 50.000 0.00 0.00 0.00 3.95
3051 3617 2.224719 CCAATGAGCATAGGAGAAGGGG 60.225 54.545 0.00 0.00 0.00 4.79
3052 3618 2.441001 CAATGAGCATAGGAGAAGGGGT 59.559 50.000 0.00 0.00 0.00 4.95
3053 3619 2.270434 TGAGCATAGGAGAAGGGGTT 57.730 50.000 0.00 0.00 0.00 4.11
3054 3620 1.839994 TGAGCATAGGAGAAGGGGTTG 59.160 52.381 0.00 0.00 0.00 3.77
3055 3621 0.548510 AGCATAGGAGAAGGGGTTGC 59.451 55.000 0.00 0.00 0.00 4.17
3056 3622 0.548510 GCATAGGAGAAGGGGTTGCT 59.451 55.000 0.00 0.00 0.00 3.91
3057 3623 1.475930 GCATAGGAGAAGGGGTTGCTC 60.476 57.143 0.00 0.00 0.00 4.26
3058 3624 1.839994 CATAGGAGAAGGGGTTGCTCA 59.160 52.381 0.00 0.00 0.00 4.26
3059 3625 1.573108 TAGGAGAAGGGGTTGCTCAG 58.427 55.000 0.00 0.00 0.00 3.35
3060 3626 1.377856 GGAGAAGGGGTTGCTCAGC 60.378 63.158 0.00 0.00 0.00 4.26
3061 3627 1.377856 GAGAAGGGGTTGCTCAGCC 60.378 63.158 0.00 0.00 43.15 4.85
3062 3628 1.846712 GAGAAGGGGTTGCTCAGCCT 61.847 60.000 0.00 0.00 43.44 4.58
3063 3629 1.377856 GAAGGGGTTGCTCAGCCTC 60.378 63.158 0.00 0.00 43.44 4.70
3064 3630 2.129555 GAAGGGGTTGCTCAGCCTCA 62.130 60.000 5.44 0.00 43.44 3.86
3065 3631 2.360475 GGGGTTGCTCAGCCTCAC 60.360 66.667 0.00 0.00 43.44 3.51
3066 3632 2.431683 GGGTTGCTCAGCCTCACA 59.568 61.111 0.00 0.00 40.32 3.58
3067 3633 1.228245 GGGTTGCTCAGCCTCACAA 60.228 57.895 0.00 0.00 40.32 3.33
3068 3634 1.239968 GGGTTGCTCAGCCTCACAAG 61.240 60.000 0.00 0.00 40.32 3.16
3069 3635 0.250467 GGTTGCTCAGCCTCACAAGA 60.250 55.000 0.00 0.00 0.00 3.02
3070 3636 1.155042 GTTGCTCAGCCTCACAAGAG 58.845 55.000 0.00 0.00 41.72 2.85
3080 3646 1.871418 CTCACAAGAGGGGGATCAGA 58.129 55.000 0.00 0.00 38.26 3.27
3081 3647 2.406559 CTCACAAGAGGGGGATCAGAT 58.593 52.381 0.00 0.00 38.26 2.90
3082 3648 2.776536 CTCACAAGAGGGGGATCAGATT 59.223 50.000 0.00 0.00 38.26 2.40
3083 3649 3.969976 CTCACAAGAGGGGGATCAGATTA 59.030 47.826 0.00 0.00 38.26 1.75
3084 3650 3.711704 TCACAAGAGGGGGATCAGATTAC 59.288 47.826 0.00 0.00 0.00 1.89
3085 3651 3.455910 CACAAGAGGGGGATCAGATTACA 59.544 47.826 0.00 0.00 0.00 2.41
3086 3652 4.103785 CACAAGAGGGGGATCAGATTACAT 59.896 45.833 0.00 0.00 0.00 2.29
3087 3653 4.103785 ACAAGAGGGGGATCAGATTACATG 59.896 45.833 0.00 0.00 0.00 3.21
3088 3654 3.254960 AGAGGGGGATCAGATTACATGG 58.745 50.000 0.00 0.00 0.00 3.66
3089 3655 3.116199 AGAGGGGGATCAGATTACATGGA 60.116 47.826 0.00 0.00 0.00 3.41
3090 3656 3.848975 GAGGGGGATCAGATTACATGGAT 59.151 47.826 0.00 0.00 0.00 3.41
3091 3657 5.032846 GAGGGGGATCAGATTACATGGATA 58.967 45.833 0.00 0.00 0.00 2.59
3092 3658 5.424068 AGGGGGATCAGATTACATGGATAA 58.576 41.667 0.00 0.00 0.00 1.75
3093 3659 6.041258 AGGGGGATCAGATTACATGGATAAT 58.959 40.000 0.00 0.00 0.00 1.28
3094 3660 6.510361 AGGGGGATCAGATTACATGGATAATT 59.490 38.462 0.00 0.00 0.00 1.40
3095 3661 6.830838 GGGGGATCAGATTACATGGATAATTC 59.169 42.308 0.00 0.00 0.00 2.17
3096 3662 7.312183 GGGGGATCAGATTACATGGATAATTCT 60.312 40.741 0.00 0.00 0.00 2.40
3097 3663 8.772250 GGGGATCAGATTACATGGATAATTCTA 58.228 37.037 0.00 0.00 0.00 2.10
3109 3675 9.799106 ACATGGATAATTCTATCTAAACCCTTG 57.201 33.333 0.00 0.00 35.23 3.61
3110 3676 9.236006 CATGGATAATTCTATCTAAACCCTTGG 57.764 37.037 0.00 0.00 35.23 3.61
3111 3677 7.231467 TGGATAATTCTATCTAAACCCTTGGC 58.769 38.462 0.00 0.00 35.23 4.52
3112 3678 7.147213 TGGATAATTCTATCTAAACCCTTGGCA 60.147 37.037 0.00 0.00 35.23 4.92
3113 3679 7.175119 GGATAATTCTATCTAAACCCTTGGCAC 59.825 40.741 0.00 0.00 35.23 5.01
3114 3680 3.926058 TCTATCTAAACCCTTGGCACC 57.074 47.619 0.00 0.00 0.00 5.01
3115 3681 3.186283 TCTATCTAAACCCTTGGCACCA 58.814 45.455 0.00 0.00 0.00 4.17
3116 3682 2.514458 ATCTAAACCCTTGGCACCAG 57.486 50.000 0.00 0.00 0.00 4.00
3117 3683 0.251165 TCTAAACCCTTGGCACCAGC 60.251 55.000 0.00 0.00 41.10 4.85
3118 3684 1.586154 CTAAACCCTTGGCACCAGCG 61.586 60.000 0.00 0.00 43.41 5.18
3136 3702 4.457496 CGTGCCCATCGCCTCACT 62.457 66.667 0.00 0.00 36.24 3.41
3137 3703 2.045926 GTGCCCATCGCCTCACTT 60.046 61.111 0.00 0.00 36.24 3.16
3138 3704 2.109126 GTGCCCATCGCCTCACTTC 61.109 63.158 0.00 0.00 36.24 3.01
3139 3705 2.892425 GCCCATCGCCTCACTTCG 60.892 66.667 0.00 0.00 0.00 3.79
3140 3706 2.579201 CCCATCGCCTCACTTCGT 59.421 61.111 0.00 0.00 0.00 3.85
3141 3707 1.519455 CCCATCGCCTCACTTCGTC 60.519 63.158 0.00 0.00 0.00 4.20
3142 3708 1.513158 CCATCGCCTCACTTCGTCT 59.487 57.895 0.00 0.00 0.00 4.18
3143 3709 0.108615 CCATCGCCTCACTTCGTCTT 60.109 55.000 0.00 0.00 0.00 3.01
3144 3710 1.673033 CCATCGCCTCACTTCGTCTTT 60.673 52.381 0.00 0.00 0.00 2.52
3145 3711 1.391485 CATCGCCTCACTTCGTCTTTG 59.609 52.381 0.00 0.00 0.00 2.77
3146 3712 0.671796 TCGCCTCACTTCGTCTTTGA 59.328 50.000 0.00 0.00 0.00 2.69
3147 3713 1.272490 TCGCCTCACTTCGTCTTTGAT 59.728 47.619 0.00 0.00 0.00 2.57
3148 3714 1.391485 CGCCTCACTTCGTCTTTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3149 3715 1.734465 GCCTCACTTCGTCTTTGATGG 59.266 52.381 0.00 0.00 0.00 3.51
3150 3716 1.734465 CCTCACTTCGTCTTTGATGGC 59.266 52.381 0.00 0.00 0.00 4.40
3151 3717 2.416747 CTCACTTCGTCTTTGATGGCA 58.583 47.619 0.00 0.00 0.00 4.92
3152 3718 2.143122 TCACTTCGTCTTTGATGGCAC 58.857 47.619 0.00 0.00 0.00 5.01
3153 3719 2.146342 CACTTCGTCTTTGATGGCACT 58.854 47.619 0.00 0.00 0.00 4.40
3154 3720 3.006430 TCACTTCGTCTTTGATGGCACTA 59.994 43.478 0.00 0.00 0.00 2.74
3155 3721 3.369147 CACTTCGTCTTTGATGGCACTAG 59.631 47.826 0.00 0.00 0.00 2.57
3156 3722 3.258372 ACTTCGTCTTTGATGGCACTAGA 59.742 43.478 0.00 0.00 0.00 2.43
3157 3723 3.510388 TCGTCTTTGATGGCACTAGAG 57.490 47.619 0.00 0.00 0.00 2.43
3158 3724 3.089284 TCGTCTTTGATGGCACTAGAGA 58.911 45.455 0.00 0.00 0.00 3.10
3159 3725 3.129462 TCGTCTTTGATGGCACTAGAGAG 59.871 47.826 0.00 0.00 0.00 3.20
3160 3726 3.736433 CGTCTTTGATGGCACTAGAGAGG 60.736 52.174 0.00 0.00 0.00 3.69
3161 3727 3.196685 GTCTTTGATGGCACTAGAGAGGT 59.803 47.826 0.00 0.00 0.00 3.85
3162 3728 3.196469 TCTTTGATGGCACTAGAGAGGTG 59.804 47.826 0.00 0.00 37.70 4.00
3163 3729 1.489481 TGATGGCACTAGAGAGGTGG 58.511 55.000 0.00 0.00 35.47 4.61
3164 3730 0.755686 GATGGCACTAGAGAGGTGGG 59.244 60.000 0.00 0.00 35.47 4.61
3165 3731 0.339859 ATGGCACTAGAGAGGTGGGA 59.660 55.000 0.00 0.00 35.47 4.37
3166 3732 0.324738 TGGCACTAGAGAGGTGGGAG 60.325 60.000 0.00 0.00 35.47 4.30
3167 3733 0.324830 GGCACTAGAGAGGTGGGAGT 60.325 60.000 0.00 0.00 35.47 3.85
3168 3734 1.562783 GCACTAGAGAGGTGGGAGTT 58.437 55.000 0.00 0.00 35.47 3.01
3169 3735 1.205893 GCACTAGAGAGGTGGGAGTTG 59.794 57.143 0.00 0.00 35.47 3.16
3170 3736 1.827969 CACTAGAGAGGTGGGAGTTGG 59.172 57.143 0.00 0.00 0.00 3.77
3171 3737 1.717077 ACTAGAGAGGTGGGAGTTGGA 59.283 52.381 0.00 0.00 0.00 3.53
3172 3738 2.104170 CTAGAGAGGTGGGAGTTGGAC 58.896 57.143 0.00 0.00 0.00 4.02
3173 3739 0.900647 AGAGAGGTGGGAGTTGGACG 60.901 60.000 0.00 0.00 0.00 4.79
3174 3740 1.889530 GAGAGGTGGGAGTTGGACGG 61.890 65.000 0.00 0.00 0.00 4.79
3175 3741 2.122547 AGGTGGGAGTTGGACGGT 60.123 61.111 0.00 0.00 0.00 4.83
3176 3742 1.765597 GAGGTGGGAGTTGGACGGTT 61.766 60.000 0.00 0.00 0.00 4.44
3177 3743 1.599797 GGTGGGAGTTGGACGGTTG 60.600 63.158 0.00 0.00 0.00 3.77
3178 3744 2.112297 TGGGAGTTGGACGGTTGC 59.888 61.111 0.00 0.00 0.00 4.17
3179 3745 2.112297 GGGAGTTGGACGGTTGCA 59.888 61.111 0.00 0.00 0.00 4.08
3180 3746 1.966451 GGGAGTTGGACGGTTGCAG 60.966 63.158 0.00 0.00 0.00 4.41
3181 3747 1.966451 GGAGTTGGACGGTTGCAGG 60.966 63.158 0.00 0.00 0.00 4.85
3182 3748 2.594592 AGTTGGACGGTTGCAGGC 60.595 61.111 0.00 0.00 0.00 4.85
3183 3749 3.670377 GTTGGACGGTTGCAGGCC 61.670 66.667 0.00 0.00 37.28 5.19
3184 3750 4.196778 TTGGACGGTTGCAGGCCA 62.197 61.111 5.01 0.00 46.87 5.36
3185 3751 3.965258 TGGACGGTTGCAGGCCAT 61.965 61.111 5.01 0.00 42.95 4.40
3186 3752 3.134127 GGACGGTTGCAGGCCATC 61.134 66.667 5.01 3.97 36.59 3.51
3187 3753 3.499737 GACGGTTGCAGGCCATCG 61.500 66.667 5.01 0.00 0.00 3.84
3188 3754 3.950794 GACGGTTGCAGGCCATCGA 62.951 63.158 5.01 0.00 0.00 3.59
3189 3755 2.745884 CGGTTGCAGGCCATCGAA 60.746 61.111 5.01 0.00 0.00 3.71
3190 3756 2.753966 CGGTTGCAGGCCATCGAAG 61.754 63.158 5.01 0.00 0.00 3.79
3191 3757 1.377202 GGTTGCAGGCCATCGAAGA 60.377 57.895 5.01 0.00 45.75 2.87
3192 3758 0.749454 GGTTGCAGGCCATCGAAGAT 60.749 55.000 5.01 0.00 45.12 2.40
3193 3759 0.379669 GTTGCAGGCCATCGAAGATG 59.620 55.000 5.01 3.21 45.12 2.90
3194 3760 0.252761 TTGCAGGCCATCGAAGATGA 59.747 50.000 5.01 0.00 45.12 2.92
3195 3761 0.462581 TGCAGGCCATCGAAGATGAC 60.463 55.000 5.01 0.00 45.12 3.06
3196 3762 0.179062 GCAGGCCATCGAAGATGACT 60.179 55.000 5.01 6.51 45.12 3.41
3197 3763 1.579698 CAGGCCATCGAAGATGACTG 58.420 55.000 5.01 13.48 45.12 3.51
3198 3764 0.179062 AGGCCATCGAAGATGACTGC 60.179 55.000 5.01 6.43 45.12 4.40
3199 3765 1.493950 GGCCATCGAAGATGACTGCG 61.494 60.000 11.22 0.00 45.72 5.18
3200 3766 0.807667 GCCATCGAAGATGACTGCGT 60.808 55.000 11.22 0.00 44.74 5.24
3201 3767 1.645034 CCATCGAAGATGACTGCGTT 58.355 50.000 11.22 0.00 44.74 4.84
3202 3768 2.002586 CCATCGAAGATGACTGCGTTT 58.997 47.619 11.22 0.00 44.74 3.60
3203 3769 2.029728 CCATCGAAGATGACTGCGTTTC 59.970 50.000 11.22 0.00 44.74 2.78
3204 3770 2.724977 TCGAAGATGACTGCGTTTCT 57.275 45.000 0.00 0.00 44.74 2.52
3205 3771 3.842732 TCGAAGATGACTGCGTTTCTA 57.157 42.857 0.00 0.00 44.74 2.10
3206 3772 4.371855 TCGAAGATGACTGCGTTTCTAT 57.628 40.909 0.00 0.00 44.74 1.98
3207 3773 4.105486 TCGAAGATGACTGCGTTTCTATG 58.895 43.478 0.00 0.00 44.74 2.23
3208 3774 3.302092 CGAAGATGACTGCGTTTCTATGC 60.302 47.826 0.00 0.00 40.05 3.14
3209 3775 3.533606 AGATGACTGCGTTTCTATGCT 57.466 42.857 0.00 0.00 37.19 3.79
3210 3776 3.866651 AGATGACTGCGTTTCTATGCTT 58.133 40.909 0.00 0.00 37.19 3.91
3211 3777 3.868077 AGATGACTGCGTTTCTATGCTTC 59.132 43.478 0.00 0.00 37.19 3.86
3212 3778 2.346803 TGACTGCGTTTCTATGCTTCC 58.653 47.619 0.00 0.00 37.19 3.46
3213 3779 2.289382 TGACTGCGTTTCTATGCTTCCA 60.289 45.455 0.00 0.00 37.19 3.53
3214 3780 2.742053 GACTGCGTTTCTATGCTTCCAA 59.258 45.455 0.00 0.00 37.19 3.53
3215 3781 3.146066 ACTGCGTTTCTATGCTTCCAAA 58.854 40.909 0.00 0.00 37.19 3.28
3216 3782 3.758554 ACTGCGTTTCTATGCTTCCAAAT 59.241 39.130 0.00 0.00 37.19 2.32
3217 3783 4.095410 TGCGTTTCTATGCTTCCAAATG 57.905 40.909 0.00 0.00 37.19 2.32
3218 3784 3.505680 TGCGTTTCTATGCTTCCAAATGT 59.494 39.130 0.00 0.00 37.19 2.71
3219 3785 4.697828 TGCGTTTCTATGCTTCCAAATGTA 59.302 37.500 0.00 0.00 37.19 2.29
3220 3786 5.028375 GCGTTTCTATGCTTCCAAATGTAC 58.972 41.667 0.00 0.00 33.36 2.90
3221 3787 5.569413 CGTTTCTATGCTTCCAAATGTACC 58.431 41.667 0.00 0.00 0.00 3.34
3222 3788 5.123186 CGTTTCTATGCTTCCAAATGTACCA 59.877 40.000 0.00 0.00 0.00 3.25
3223 3789 6.348950 CGTTTCTATGCTTCCAAATGTACCAA 60.349 38.462 0.00 0.00 0.00 3.67
3224 3790 6.757897 TTCTATGCTTCCAAATGTACCAAG 57.242 37.500 0.00 0.00 0.00 3.61
3225 3791 3.874392 ATGCTTCCAAATGTACCAAGC 57.126 42.857 0.00 0.00 39.98 4.01
3226 3792 2.875296 TGCTTCCAAATGTACCAAGCT 58.125 42.857 3.82 0.00 40.18 3.74
3227 3793 2.557924 TGCTTCCAAATGTACCAAGCTG 59.442 45.455 3.82 0.00 40.18 4.24
3228 3794 2.558359 GCTTCCAAATGTACCAAGCTGT 59.442 45.455 0.00 0.00 37.17 4.40
3229 3795 3.612479 GCTTCCAAATGTACCAAGCTGTG 60.612 47.826 0.00 0.00 37.17 3.66
3230 3796 3.500448 TCCAAATGTACCAAGCTGTGA 57.500 42.857 0.00 0.00 0.00 3.58
3231 3797 4.032960 TCCAAATGTACCAAGCTGTGAT 57.967 40.909 0.00 0.00 0.00 3.06
3232 3798 3.758023 TCCAAATGTACCAAGCTGTGATG 59.242 43.478 0.00 0.00 0.00 3.07
3233 3799 3.758023 CCAAATGTACCAAGCTGTGATGA 59.242 43.478 0.00 0.00 0.00 2.92
3234 3800 4.400251 CCAAATGTACCAAGCTGTGATGAT 59.600 41.667 0.00 0.00 0.00 2.45
3235 3801 5.449588 CCAAATGTACCAAGCTGTGATGATC 60.450 44.000 0.00 0.00 0.00 2.92
3236 3802 2.892374 TGTACCAAGCTGTGATGATCG 58.108 47.619 0.00 0.00 0.00 3.69
3237 3803 1.594862 GTACCAAGCTGTGATGATCGC 59.405 52.381 0.00 0.00 0.00 4.58
3238 3804 0.251354 ACCAAGCTGTGATGATCGCT 59.749 50.000 7.57 0.00 0.00 4.93
3239 3805 1.482182 ACCAAGCTGTGATGATCGCTA 59.518 47.619 7.57 0.00 31.48 4.26
3240 3806 2.133553 CCAAGCTGTGATGATCGCTAG 58.866 52.381 7.57 4.62 31.48 3.42
3241 3807 2.223900 CCAAGCTGTGATGATCGCTAGA 60.224 50.000 7.57 0.00 31.48 2.43
3242 3808 3.051327 CAAGCTGTGATGATCGCTAGAG 58.949 50.000 7.57 0.00 31.48 2.43
3243 3809 2.580962 AGCTGTGATGATCGCTAGAGA 58.419 47.619 7.57 0.00 0.00 3.10
3244 3810 2.553602 AGCTGTGATGATCGCTAGAGAG 59.446 50.000 7.57 0.00 0.00 3.20
3245 3811 2.351641 GCTGTGATGATCGCTAGAGAGG 60.352 54.545 7.57 0.00 0.00 3.69
3246 3812 1.611006 TGTGATGATCGCTAGAGAGGC 59.389 52.381 7.57 0.00 0.00 4.70
3261 3827 4.633980 GGCGAAACCTTTGCACTG 57.366 55.556 0.00 0.00 34.51 3.66
3262 3828 1.661509 GGCGAAACCTTTGCACTGC 60.662 57.895 0.00 0.00 34.51 4.40
3263 3829 1.360192 GCGAAACCTTTGCACTGCT 59.640 52.632 1.98 0.00 0.00 4.24
3264 3830 0.936297 GCGAAACCTTTGCACTGCTG 60.936 55.000 1.98 0.00 0.00 4.41
3265 3831 0.662619 CGAAACCTTTGCACTGCTGA 59.337 50.000 1.98 0.00 0.00 4.26
3266 3832 1.334419 CGAAACCTTTGCACTGCTGAG 60.334 52.381 1.98 0.29 0.00 3.35
3267 3833 1.000938 GAAACCTTTGCACTGCTGAGG 60.001 52.381 16.94 16.94 37.35 3.86
3268 3834 1.458639 AACCTTTGCACTGCTGAGGC 61.459 55.000 17.94 1.31 35.73 4.70
3269 3835 2.559840 CTTTGCACTGCTGAGGCG 59.440 61.111 1.98 0.00 42.25 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.710900 CTTAACCATGGAATTAAAAGAAAAGCT 57.289 29.630 21.47 0.00 0.00 3.74
1 2 8.443160 GCTTAACCATGGAATTAAAAGAAAAGC 58.557 33.333 21.47 9.39 0.00 3.51
2 3 9.710900 AGCTTAACCATGGAATTAAAAGAAAAG 57.289 29.630 21.47 3.22 0.00 2.27
4 5 9.487790 CAAGCTTAACCATGGAATTAAAAGAAA 57.512 29.630 21.47 0.00 0.00 2.52
5 6 8.865090 TCAAGCTTAACCATGGAATTAAAAGAA 58.135 29.630 21.47 0.00 0.00 2.52
6 7 8.415950 TCAAGCTTAACCATGGAATTAAAAGA 57.584 30.769 21.47 5.15 0.00 2.52
7 8 9.143631 CTTCAAGCTTAACCATGGAATTAAAAG 57.856 33.333 21.47 12.38 0.00 2.27
8 9 8.865090 TCTTCAAGCTTAACCATGGAATTAAAA 58.135 29.630 21.47 4.10 0.00 1.52
9 10 8.415950 TCTTCAAGCTTAACCATGGAATTAAA 57.584 30.769 21.47 3.92 0.00 1.52
10 11 8.415950 TTCTTCAAGCTTAACCATGGAATTAA 57.584 30.769 21.47 12.73 0.00 1.40
11 12 8.415950 TTTCTTCAAGCTTAACCATGGAATTA 57.584 30.769 21.47 4.53 0.00 1.40
12 13 6.916360 TTCTTCAAGCTTAACCATGGAATT 57.084 33.333 21.47 5.69 0.00 2.17
13 14 6.916360 TTTCTTCAAGCTTAACCATGGAAT 57.084 33.333 21.47 9.50 0.00 3.01
122 124 1.554160 CCTGACAGACAAGCTCCATCT 59.446 52.381 3.32 0.00 0.00 2.90
134 141 2.680805 GCAAATCCCGATTCCTGACAGA 60.681 50.000 3.32 0.00 0.00 3.41
160 167 1.024271 GGATACACACGGCATGCAAT 58.976 50.000 21.36 3.12 0.00 3.56
161 168 1.365368 CGGATACACACGGCATGCAA 61.365 55.000 21.36 0.00 0.00 4.08
223 240 3.944015 AGATTTTAGATGCTGCTGTGTCC 59.056 43.478 0.00 0.00 0.00 4.02
293 310 1.408822 GGGGAGTCCGATTGCTCAATT 60.409 52.381 2.26 0.00 33.66 2.32
372 392 5.475909 TCCAGAAGTGAGATTTGTAGTACGT 59.524 40.000 0.00 0.00 0.00 3.57
373 393 5.950883 TCCAGAAGTGAGATTTGTAGTACG 58.049 41.667 0.00 0.00 0.00 3.67
374 394 7.030768 GTCTCCAGAAGTGAGATTTGTAGTAC 58.969 42.308 0.00 0.00 40.73 2.73
393 413 3.616560 GCTGGTATTCTTGTTCGTCTCCA 60.617 47.826 0.00 0.00 0.00 3.86
399 419 3.614616 GTCTCAGCTGGTATTCTTGTTCG 59.385 47.826 15.13 0.00 0.00 3.95
408 428 2.157640 AGCTCTGTCTCAGCTGGTAT 57.842 50.000 15.13 0.00 45.85 2.73
417 437 3.196685 ACCTGGTAATTCAGCTCTGTCTC 59.803 47.826 0.00 0.00 33.64 3.36
477 498 8.907685 CGTTGTTGTTTGGACGATTTAATTAAT 58.092 29.630 0.00 0.00 37.69 1.40
478 499 7.096558 GCGTTGTTGTTTGGACGATTTAATTAA 60.097 33.333 0.00 0.00 37.69 1.40
594 661 3.759581 AGATGAAGTGGTGATTGTTGCT 58.240 40.909 0.00 0.00 0.00 3.91
659 726 0.109458 TGCAGTACTACGTCAAGCCG 60.109 55.000 0.00 0.00 0.00 5.52
668 735 2.672961 TCACCTGCATGCAGTACTAC 57.327 50.000 38.22 1.27 42.15 2.73
716 804 1.275856 TGATTGGTGGCAATGGAAAGC 59.724 47.619 0.00 0.00 0.00 3.51
791 879 2.214216 GGGGAAAAGGGTTGGTGGC 61.214 63.158 0.00 0.00 0.00 5.01
793 881 0.541998 GAGGGGGAAAAGGGTTGGTG 60.542 60.000 0.00 0.00 0.00 4.17
870 963 7.316544 AGCGTGTTAAATAGAAGGTTTATGG 57.683 36.000 0.00 0.00 0.00 2.74
872 965 7.065443 GTGGAGCGTGTTAAATAGAAGGTTTAT 59.935 37.037 0.00 0.00 0.00 1.40
876 969 4.020485 AGTGGAGCGTGTTAAATAGAAGGT 60.020 41.667 0.00 0.00 0.00 3.50
1425 1542 2.589159 TTTGCACGTACCAGCGCA 60.589 55.556 11.47 0.00 34.88 6.09
1448 1568 0.250858 CGGGGCTAATGATGCATGGA 60.251 55.000 2.46 0.00 0.00 3.41
1580 1712 0.107703 GGACACAGATGGCGGATCAA 60.108 55.000 0.00 0.00 32.81 2.57
1586 1718 2.063979 TAGGGGGACACAGATGGCG 61.064 63.158 0.00 0.00 32.81 5.69
1598 1730 2.920271 AGAAAAGGAGAAAGGTAGGGGG 59.080 50.000 0.00 0.00 0.00 5.40
2235 2371 2.883730 GTGAGCGCGCCGATGTAA 60.884 61.111 30.33 0.00 0.00 2.41
2338 2474 4.696479 ATCCATCGCCACTCTTCTAAAT 57.304 40.909 0.00 0.00 0.00 1.40
2361 2497 1.272212 GGTGCACGTCCAATCCAAATT 59.728 47.619 11.45 0.00 0.00 1.82
2378 2514 0.657840 GCTAAATGCTAGCACGGGTG 59.342 55.000 22.07 10.59 40.14 4.61
2386 2522 5.790495 GTCAAACAAGAACGCTAAATGCTAG 59.210 40.000 0.00 0.00 40.11 3.42
2404 2540 5.098211 GGAGTACTACGTACATGGTCAAAC 58.902 45.833 0.00 0.00 41.03 2.93
2531 2675 3.557577 TCATCAATTTGGCACACGAAG 57.442 42.857 0.00 0.00 39.29 3.79
2659 2827 4.488126 TCATGCTTGTTTTCTCGAAAGG 57.512 40.909 0.00 0.00 0.00 3.11
2667 2835 5.421212 TGGCATTTTTCATGCTTGTTTTC 57.579 34.783 6.76 0.00 44.02 2.29
2777 2945 4.458295 AGGTGATGACAAATGAAGCAGAAG 59.542 41.667 0.00 0.00 0.00 2.85
2808 2976 6.478512 AAAGAGAAAAGAGAGAGAGTGTGT 57.521 37.500 0.00 0.00 0.00 3.72
2812 2980 6.994421 AGGAAAAGAGAAAAGAGAGAGAGT 57.006 37.500 0.00 0.00 0.00 3.24
2929 3495 0.736325 ATATGCCTCCGCGCGTATTC 60.736 55.000 29.95 15.14 37.63 1.75
2930 3496 0.736325 GATATGCCTCCGCGCGTATT 60.736 55.000 29.95 9.46 40.30 1.89
2931 3497 1.153823 GATATGCCTCCGCGCGTAT 60.154 57.895 29.95 18.16 42.37 3.06
2932 3498 1.873270 ATGATATGCCTCCGCGCGTA 61.873 55.000 29.95 13.14 38.08 4.42
2933 3499 2.715532 AATGATATGCCTCCGCGCGT 62.716 55.000 29.95 11.67 38.08 6.01
2934 3500 1.959899 GAATGATATGCCTCCGCGCG 61.960 60.000 25.67 25.67 38.08 6.86
2935 3501 1.639298 GGAATGATATGCCTCCGCGC 61.639 60.000 0.00 0.00 38.08 6.86
2936 3502 0.320683 TGGAATGATATGCCTCCGCG 60.321 55.000 0.00 0.00 38.08 6.46
2937 3503 2.119801 ATGGAATGATATGCCTCCGC 57.880 50.000 0.00 0.00 0.00 5.54
2938 3504 2.751259 CCAATGGAATGATATGCCTCCG 59.249 50.000 0.00 0.00 0.00 4.63
2939 3505 3.771216 ACCAATGGAATGATATGCCTCC 58.229 45.455 6.16 0.00 0.00 4.30
2940 3506 5.809001 TCTACCAATGGAATGATATGCCTC 58.191 41.667 6.16 0.00 0.00 4.70
2941 3507 5.848286 TCTACCAATGGAATGATATGCCT 57.152 39.130 6.16 0.00 0.00 4.75
2942 3508 6.769822 CCTATCTACCAATGGAATGATATGCC 59.230 42.308 6.16 0.00 0.00 4.40
2943 3509 7.568349 TCCTATCTACCAATGGAATGATATGC 58.432 38.462 6.16 0.00 0.00 3.14
2944 3510 8.985922 TCTCCTATCTACCAATGGAATGATATG 58.014 37.037 6.16 7.81 0.00 1.78
2945 3511 9.211410 CTCTCCTATCTACCAATGGAATGATAT 57.789 37.037 6.16 0.00 0.00 1.63
2946 3512 8.401894 TCTCTCCTATCTACCAATGGAATGATA 58.598 37.037 6.16 9.42 0.00 2.15
2947 3513 7.251936 TCTCTCCTATCTACCAATGGAATGAT 58.748 38.462 6.16 8.76 0.00 2.45
2948 3514 6.624297 TCTCTCCTATCTACCAATGGAATGA 58.376 40.000 6.16 0.93 0.00 2.57
2949 3515 6.924913 TCTCTCCTATCTACCAATGGAATG 57.075 41.667 6.16 0.00 0.00 2.67
2950 3516 7.937700 TTTCTCTCCTATCTACCAATGGAAT 57.062 36.000 6.16 0.00 0.00 3.01
2951 3517 7.182026 TGTTTTCTCTCCTATCTACCAATGGAA 59.818 37.037 6.16 0.00 0.00 3.53
2952 3518 6.672218 TGTTTTCTCTCCTATCTACCAATGGA 59.328 38.462 6.16 0.00 0.00 3.41
2953 3519 6.889198 TGTTTTCTCTCCTATCTACCAATGG 58.111 40.000 0.00 0.00 0.00 3.16
2954 3520 7.497249 CCTTGTTTTCTCTCCTATCTACCAATG 59.503 40.741 0.00 0.00 0.00 2.82
2955 3521 7.366011 CCCTTGTTTTCTCTCCTATCTACCAAT 60.366 40.741 0.00 0.00 0.00 3.16
2956 3522 6.070194 CCCTTGTTTTCTCTCCTATCTACCAA 60.070 42.308 0.00 0.00 0.00 3.67
2957 3523 5.425539 CCCTTGTTTTCTCTCCTATCTACCA 59.574 44.000 0.00 0.00 0.00 3.25
2958 3524 5.425862 ACCCTTGTTTTCTCTCCTATCTACC 59.574 44.000 0.00 0.00 0.00 3.18
2959 3525 6.547930 ACCCTTGTTTTCTCTCCTATCTAC 57.452 41.667 0.00 0.00 0.00 2.59
2960 3526 7.017254 ACAAACCCTTGTTTTCTCTCCTATCTA 59.983 37.037 0.00 0.00 43.45 1.98
2961 3527 6.183361 ACAAACCCTTGTTTTCTCTCCTATCT 60.183 38.462 0.00 0.00 43.45 1.98
2962 3528 6.004574 ACAAACCCTTGTTTTCTCTCCTATC 58.995 40.000 0.00 0.00 43.45 2.08
2963 3529 5.770162 CACAAACCCTTGTTTTCTCTCCTAT 59.230 40.000 0.00 0.00 43.45 2.57
2964 3530 5.130350 CACAAACCCTTGTTTTCTCTCCTA 58.870 41.667 0.00 0.00 43.45 2.94
2965 3531 3.954258 CACAAACCCTTGTTTTCTCTCCT 59.046 43.478 0.00 0.00 43.45 3.69
2966 3532 3.068165 CCACAAACCCTTGTTTTCTCTCC 59.932 47.826 0.00 0.00 43.45 3.71
2967 3533 3.699538 ACCACAAACCCTTGTTTTCTCTC 59.300 43.478 0.00 0.00 43.45 3.20
2968 3534 3.708451 ACCACAAACCCTTGTTTTCTCT 58.292 40.909 0.00 0.00 43.45 3.10
2969 3535 4.465632 AACCACAAACCCTTGTTTTCTC 57.534 40.909 0.00 0.00 43.45 2.87
2970 3536 4.160814 GGTAACCACAAACCCTTGTTTTCT 59.839 41.667 0.00 0.00 43.45 2.52
2971 3537 4.435425 GGTAACCACAAACCCTTGTTTTC 58.565 43.478 0.00 0.00 43.45 2.29
2972 3538 4.475051 GGTAACCACAAACCCTTGTTTT 57.525 40.909 0.00 0.00 43.45 2.43
2988 3554 2.312390 TGTTCAAGCCTTTGGGGTAAC 58.688 47.619 0.00 0.00 43.29 2.50
2989 3555 2.696187 GTTGTTCAAGCCTTTGGGGTAA 59.304 45.455 0.00 0.00 43.29 2.85
2990 3556 2.091555 AGTTGTTCAAGCCTTTGGGGTA 60.092 45.455 0.00 0.00 43.29 3.69
2991 3557 1.119684 GTTGTTCAAGCCTTTGGGGT 58.880 50.000 0.00 0.00 46.45 4.95
2992 3558 1.413118 AGTTGTTCAAGCCTTTGGGG 58.587 50.000 0.00 0.00 34.97 4.96
2993 3559 2.558359 CCTAGTTGTTCAAGCCTTTGGG 59.442 50.000 0.00 0.00 34.97 4.12
2994 3560 2.558359 CCCTAGTTGTTCAAGCCTTTGG 59.442 50.000 0.00 0.00 34.97 3.28
2995 3561 2.029918 GCCCTAGTTGTTCAAGCCTTTG 60.030 50.000 0.00 0.00 35.57 2.77
2996 3562 2.239400 GCCCTAGTTGTTCAAGCCTTT 58.761 47.619 0.00 0.00 0.00 3.11
2997 3563 1.882352 CGCCCTAGTTGTTCAAGCCTT 60.882 52.381 0.00 0.00 0.00 4.35
2998 3564 0.321653 CGCCCTAGTTGTTCAAGCCT 60.322 55.000 0.00 0.00 0.00 4.58
2999 3565 1.923227 GCGCCCTAGTTGTTCAAGCC 61.923 60.000 0.00 0.00 0.00 4.35
3000 3566 1.502190 GCGCCCTAGTTGTTCAAGC 59.498 57.895 0.00 0.00 0.00 4.01
3001 3567 0.321653 AGGCGCCCTAGTTGTTCAAG 60.322 55.000 26.15 0.00 28.47 3.02
3002 3568 0.109723 AAGGCGCCCTAGTTGTTCAA 59.890 50.000 26.15 0.00 31.13 2.69
3003 3569 0.321298 GAAGGCGCCCTAGTTGTTCA 60.321 55.000 26.15 0.00 31.13 3.18
3004 3570 0.321298 TGAAGGCGCCCTAGTTGTTC 60.321 55.000 26.15 18.71 31.13 3.18
3005 3571 0.109723 TTGAAGGCGCCCTAGTTGTT 59.890 50.000 26.15 9.03 31.13 2.83
3006 3572 0.321653 CTTGAAGGCGCCCTAGTTGT 60.322 55.000 26.15 0.00 31.13 3.32
3007 3573 1.026718 CCTTGAAGGCGCCCTAGTTG 61.027 60.000 26.15 9.44 31.13 3.16
3008 3574 1.299976 CCTTGAAGGCGCCCTAGTT 59.700 57.895 26.15 11.30 31.13 2.24
3009 3575 1.489560 AACCTTGAAGGCGCCCTAGT 61.490 55.000 26.15 9.70 39.63 2.57
3010 3576 0.539986 TAACCTTGAAGGCGCCCTAG 59.460 55.000 26.15 14.84 39.63 3.02
3011 3577 0.251073 GTAACCTTGAAGGCGCCCTA 59.749 55.000 26.15 6.83 39.63 3.53
3012 3578 1.002502 GTAACCTTGAAGGCGCCCT 60.003 57.895 26.15 11.38 39.63 5.19
3013 3579 2.044555 GGTAACCTTGAAGGCGCCC 61.045 63.158 26.15 9.73 39.63 6.13
3014 3580 0.891904 TTGGTAACCTTGAAGGCGCC 60.892 55.000 21.89 21.89 39.63 6.53
3015 3581 1.135402 CATTGGTAACCTTGAAGGCGC 60.135 52.381 11.96 0.00 39.63 6.53
3016 3582 2.420022 CTCATTGGTAACCTTGAAGGCG 59.580 50.000 11.96 0.00 39.63 5.52
3017 3583 2.164422 GCTCATTGGTAACCTTGAAGGC 59.836 50.000 11.96 0.00 39.63 4.35
3018 3584 3.420893 TGCTCATTGGTAACCTTGAAGG 58.579 45.455 10.24 10.24 42.49 3.46
3019 3585 5.297776 CCTATGCTCATTGGTAACCTTGAAG 59.702 44.000 2.78 0.00 0.00 3.02
3020 3586 5.045213 TCCTATGCTCATTGGTAACCTTGAA 60.045 40.000 9.51 0.00 35.60 2.69
3021 3587 4.473196 TCCTATGCTCATTGGTAACCTTGA 59.527 41.667 9.51 0.00 35.60 3.02
3022 3588 4.780815 TCCTATGCTCATTGGTAACCTTG 58.219 43.478 9.51 0.00 35.60 3.61
3023 3589 4.721776 TCTCCTATGCTCATTGGTAACCTT 59.278 41.667 9.51 0.00 35.60 3.50
3024 3590 4.298626 TCTCCTATGCTCATTGGTAACCT 58.701 43.478 9.51 0.00 35.60 3.50
3025 3591 4.689612 TCTCCTATGCTCATTGGTAACC 57.310 45.455 9.51 0.00 35.60 2.85
3026 3592 5.059833 CCTTCTCCTATGCTCATTGGTAAC 58.940 45.833 9.51 0.00 35.60 2.50
3027 3593 4.103153 CCCTTCTCCTATGCTCATTGGTAA 59.897 45.833 9.51 5.82 35.60 2.85
3028 3594 3.648067 CCCTTCTCCTATGCTCATTGGTA 59.352 47.826 9.51 0.00 35.60 3.25
3029 3595 2.441001 CCCTTCTCCTATGCTCATTGGT 59.559 50.000 9.51 0.00 35.60 3.67
3030 3596 2.224719 CCCCTTCTCCTATGCTCATTGG 60.225 54.545 4.32 4.32 35.46 3.16
3031 3597 2.441001 ACCCCTTCTCCTATGCTCATTG 59.559 50.000 0.00 0.00 0.00 2.82
3032 3598 2.781667 ACCCCTTCTCCTATGCTCATT 58.218 47.619 0.00 0.00 0.00 2.57
3033 3599 2.441001 CAACCCCTTCTCCTATGCTCAT 59.559 50.000 0.00 0.00 0.00 2.90
3034 3600 1.839994 CAACCCCTTCTCCTATGCTCA 59.160 52.381 0.00 0.00 0.00 4.26
3035 3601 1.475930 GCAACCCCTTCTCCTATGCTC 60.476 57.143 0.00 0.00 0.00 4.26
3036 3602 0.548510 GCAACCCCTTCTCCTATGCT 59.451 55.000 0.00 0.00 0.00 3.79
3037 3603 0.548510 AGCAACCCCTTCTCCTATGC 59.451 55.000 0.00 0.00 0.00 3.14
3038 3604 1.839994 TGAGCAACCCCTTCTCCTATG 59.160 52.381 0.00 0.00 0.00 2.23
3039 3605 2.122768 CTGAGCAACCCCTTCTCCTAT 58.877 52.381 0.00 0.00 0.00 2.57
3040 3606 1.573108 CTGAGCAACCCCTTCTCCTA 58.427 55.000 0.00 0.00 0.00 2.94
3041 3607 1.846712 GCTGAGCAACCCCTTCTCCT 61.847 60.000 0.00 0.00 0.00 3.69
3042 3608 1.377856 GCTGAGCAACCCCTTCTCC 60.378 63.158 0.00 0.00 0.00 3.71
3043 3609 1.377856 GGCTGAGCAACCCCTTCTC 60.378 63.158 6.82 0.00 0.00 2.87
3044 3610 1.846712 GAGGCTGAGCAACCCCTTCT 61.847 60.000 6.82 0.00 0.00 2.85
3045 3611 1.377856 GAGGCTGAGCAACCCCTTC 60.378 63.158 6.82 0.00 0.00 3.46
3046 3612 2.156098 TGAGGCTGAGCAACCCCTT 61.156 57.895 6.82 0.00 0.00 3.95
3047 3613 2.530151 TGAGGCTGAGCAACCCCT 60.530 61.111 6.82 0.00 0.00 4.79
3048 3614 2.360475 GTGAGGCTGAGCAACCCC 60.360 66.667 6.82 0.00 0.00 4.95
3049 3615 1.228245 TTGTGAGGCTGAGCAACCC 60.228 57.895 6.82 0.00 0.00 4.11
3050 3616 0.250467 TCTTGTGAGGCTGAGCAACC 60.250 55.000 6.82 0.00 0.00 3.77
3051 3617 1.155042 CTCTTGTGAGGCTGAGCAAC 58.845 55.000 6.82 1.71 36.70 4.17
3052 3618 3.620061 CTCTTGTGAGGCTGAGCAA 57.380 52.632 6.82 0.00 36.70 3.91
3061 3627 1.871418 TCTGATCCCCCTCTTGTGAG 58.129 55.000 0.00 0.00 39.92 3.51
3062 3628 2.575921 ATCTGATCCCCCTCTTGTGA 57.424 50.000 0.00 0.00 0.00 3.58
3063 3629 3.455910 TGTAATCTGATCCCCCTCTTGTG 59.544 47.826 0.00 0.00 0.00 3.33
3064 3630 3.736094 TGTAATCTGATCCCCCTCTTGT 58.264 45.455 0.00 0.00 0.00 3.16
3065 3631 4.506271 CCATGTAATCTGATCCCCCTCTTG 60.506 50.000 0.00 0.00 0.00 3.02
3066 3632 3.654806 CCATGTAATCTGATCCCCCTCTT 59.345 47.826 0.00 0.00 0.00 2.85
3067 3633 3.116199 TCCATGTAATCTGATCCCCCTCT 60.116 47.826 0.00 0.00 0.00 3.69
3068 3634 3.251484 TCCATGTAATCTGATCCCCCTC 58.749 50.000 0.00 0.00 0.00 4.30
3069 3635 3.367280 TCCATGTAATCTGATCCCCCT 57.633 47.619 0.00 0.00 0.00 4.79
3070 3636 5.779241 TTATCCATGTAATCTGATCCCCC 57.221 43.478 0.00 0.00 0.00 5.40
3071 3637 7.637511 AGAATTATCCATGTAATCTGATCCCC 58.362 38.462 0.00 0.00 0.00 4.81
3083 3649 9.799106 CAAGGGTTTAGATAGAATTATCCATGT 57.201 33.333 0.00 0.00 37.05 3.21
3084 3650 9.236006 CCAAGGGTTTAGATAGAATTATCCATG 57.764 37.037 0.00 0.00 37.05 3.66
3085 3651 7.890655 GCCAAGGGTTTAGATAGAATTATCCAT 59.109 37.037 0.00 0.00 37.05 3.41
3086 3652 7.147213 TGCCAAGGGTTTAGATAGAATTATCCA 60.147 37.037 0.00 0.00 37.05 3.41
3087 3653 7.175119 GTGCCAAGGGTTTAGATAGAATTATCC 59.825 40.741 0.00 0.00 37.05 2.59
3088 3654 7.175119 GGTGCCAAGGGTTTAGATAGAATTATC 59.825 40.741 0.00 0.00 36.69 1.75
3089 3655 7.004691 GGTGCCAAGGGTTTAGATAGAATTAT 58.995 38.462 0.00 0.00 0.00 1.28
3090 3656 6.069323 TGGTGCCAAGGGTTTAGATAGAATTA 60.069 38.462 0.00 0.00 0.00 1.40
3091 3657 5.201243 GGTGCCAAGGGTTTAGATAGAATT 58.799 41.667 0.00 0.00 0.00 2.17
3092 3658 4.229582 TGGTGCCAAGGGTTTAGATAGAAT 59.770 41.667 0.00 0.00 0.00 2.40
3093 3659 3.589735 TGGTGCCAAGGGTTTAGATAGAA 59.410 43.478 0.00 0.00 0.00 2.10
3094 3660 3.186283 TGGTGCCAAGGGTTTAGATAGA 58.814 45.455 0.00 0.00 0.00 1.98
3095 3661 3.545703 CTGGTGCCAAGGGTTTAGATAG 58.454 50.000 0.00 0.00 0.00 2.08
3096 3662 2.356741 GCTGGTGCCAAGGGTTTAGATA 60.357 50.000 0.00 0.00 0.00 1.98
3097 3663 1.616994 GCTGGTGCCAAGGGTTTAGAT 60.617 52.381 0.00 0.00 0.00 1.98
3098 3664 0.251165 GCTGGTGCCAAGGGTTTAGA 60.251 55.000 0.00 0.00 0.00 2.10
3099 3665 1.586154 CGCTGGTGCCAAGGGTTTAG 61.586 60.000 0.00 0.00 35.36 1.85
3100 3666 1.602323 CGCTGGTGCCAAGGGTTTA 60.602 57.895 0.00 0.00 35.36 2.01
3101 3667 2.912025 CGCTGGTGCCAAGGGTTT 60.912 61.111 0.00 0.00 35.36 3.27
3119 3685 3.958147 AAGTGAGGCGATGGGCACG 62.958 63.158 3.67 0.00 46.16 5.34
3120 3686 2.045926 AAGTGAGGCGATGGGCAC 60.046 61.111 3.67 0.00 46.16 5.01
3121 3687 2.268920 GAAGTGAGGCGATGGGCA 59.731 61.111 3.67 0.00 46.16 5.36
3122 3688 2.892425 CGAAGTGAGGCGATGGGC 60.892 66.667 0.00 0.00 42.51 5.36
3123 3689 2.579201 ACGAAGTGAGGCGATGGG 59.421 61.111 0.00 0.00 42.51 4.00
3135 3701 3.849911 TCTAGTGCCATCAAAGACGAAG 58.150 45.455 0.00 0.00 0.00 3.79
3136 3702 3.509967 TCTCTAGTGCCATCAAAGACGAA 59.490 43.478 0.00 0.00 0.00 3.85
3137 3703 3.089284 TCTCTAGTGCCATCAAAGACGA 58.911 45.455 0.00 0.00 0.00 4.20
3138 3704 3.443037 CTCTCTAGTGCCATCAAAGACG 58.557 50.000 0.00 0.00 0.00 4.18
3139 3705 3.196685 ACCTCTCTAGTGCCATCAAAGAC 59.803 47.826 0.00 0.00 0.00 3.01
3140 3706 3.196469 CACCTCTCTAGTGCCATCAAAGA 59.804 47.826 0.00 0.00 0.00 2.52
3141 3707 3.529533 CACCTCTCTAGTGCCATCAAAG 58.470 50.000 0.00 0.00 0.00 2.77
3142 3708 2.237143 CCACCTCTCTAGTGCCATCAAA 59.763 50.000 0.00 0.00 33.75 2.69
3143 3709 1.833630 CCACCTCTCTAGTGCCATCAA 59.166 52.381 0.00 0.00 33.75 2.57
3144 3710 1.489481 CCACCTCTCTAGTGCCATCA 58.511 55.000 0.00 0.00 33.75 3.07
3145 3711 0.755686 CCCACCTCTCTAGTGCCATC 59.244 60.000 0.00 0.00 33.75 3.51
3146 3712 0.339859 TCCCACCTCTCTAGTGCCAT 59.660 55.000 0.00 0.00 33.75 4.40
3147 3713 0.324738 CTCCCACCTCTCTAGTGCCA 60.325 60.000 0.00 0.00 33.75 4.92
3148 3714 0.324830 ACTCCCACCTCTCTAGTGCC 60.325 60.000 0.00 0.00 33.75 5.01
3149 3715 1.205893 CAACTCCCACCTCTCTAGTGC 59.794 57.143 0.00 0.00 33.75 4.40
3150 3716 1.827969 CCAACTCCCACCTCTCTAGTG 59.172 57.143 0.00 0.00 34.91 2.74
3151 3717 1.717077 TCCAACTCCCACCTCTCTAGT 59.283 52.381 0.00 0.00 0.00 2.57
3152 3718 2.104170 GTCCAACTCCCACCTCTCTAG 58.896 57.143 0.00 0.00 0.00 2.43
3153 3719 1.616187 CGTCCAACTCCCACCTCTCTA 60.616 57.143 0.00 0.00 0.00 2.43
3154 3720 0.900647 CGTCCAACTCCCACCTCTCT 60.901 60.000 0.00 0.00 0.00 3.10
3155 3721 1.592223 CGTCCAACTCCCACCTCTC 59.408 63.158 0.00 0.00 0.00 3.20
3156 3722 1.913762 CCGTCCAACTCCCACCTCT 60.914 63.158 0.00 0.00 0.00 3.69
3157 3723 1.765597 AACCGTCCAACTCCCACCTC 61.766 60.000 0.00 0.00 0.00 3.85
3158 3724 1.768888 AACCGTCCAACTCCCACCT 60.769 57.895 0.00 0.00 0.00 4.00
3159 3725 1.599797 CAACCGTCCAACTCCCACC 60.600 63.158 0.00 0.00 0.00 4.61
3160 3726 2.258726 GCAACCGTCCAACTCCCAC 61.259 63.158 0.00 0.00 0.00 4.61
3161 3727 2.112297 GCAACCGTCCAACTCCCA 59.888 61.111 0.00 0.00 0.00 4.37
3162 3728 1.966451 CTGCAACCGTCCAACTCCC 60.966 63.158 0.00 0.00 0.00 4.30
3163 3729 1.966451 CCTGCAACCGTCCAACTCC 60.966 63.158 0.00 0.00 0.00 3.85
3164 3730 2.617274 GCCTGCAACCGTCCAACTC 61.617 63.158 0.00 0.00 0.00 3.01
3165 3731 2.594592 GCCTGCAACCGTCCAACT 60.595 61.111 0.00 0.00 0.00 3.16
3166 3732 3.670377 GGCCTGCAACCGTCCAAC 61.670 66.667 0.00 0.00 0.00 3.77
3167 3733 3.505790 ATGGCCTGCAACCGTCCAA 62.506 57.895 3.32 0.00 0.00 3.53
3168 3734 3.918253 GATGGCCTGCAACCGTCCA 62.918 63.158 14.23 5.66 37.26 4.02
3169 3735 3.134127 GATGGCCTGCAACCGTCC 61.134 66.667 14.23 0.50 37.26 4.79
3170 3736 3.499737 CGATGGCCTGCAACCGTC 61.500 66.667 14.91 14.91 39.44 4.79
3171 3737 3.545124 TTCGATGGCCTGCAACCGT 62.545 57.895 3.32 0.00 0.00 4.83
3172 3738 2.745884 TTCGATGGCCTGCAACCG 60.746 61.111 3.32 0.00 0.00 4.44
3173 3739 0.749454 ATCTTCGATGGCCTGCAACC 60.749 55.000 3.32 0.00 0.00 3.77
3174 3740 0.379669 CATCTTCGATGGCCTGCAAC 59.620 55.000 3.32 0.00 0.00 4.17
3175 3741 0.252761 TCATCTTCGATGGCCTGCAA 59.747 50.000 3.32 0.00 0.00 4.08
3176 3742 0.462581 GTCATCTTCGATGGCCTGCA 60.463 55.000 3.32 0.00 0.00 4.41
3177 3743 0.179062 AGTCATCTTCGATGGCCTGC 60.179 55.000 3.32 0.00 0.00 4.85
3178 3744 1.579698 CAGTCATCTTCGATGGCCTG 58.420 55.000 3.32 7.23 0.00 4.85
3179 3745 0.179062 GCAGTCATCTTCGATGGCCT 60.179 55.000 3.32 0.00 0.00 5.19
3180 3746 1.493950 CGCAGTCATCTTCGATGGCC 61.494 60.000 0.00 0.00 32.53 5.36
3181 3747 0.807667 ACGCAGTCATCTTCGATGGC 60.808 55.000 0.38 0.38 29.74 4.40
3182 3748 1.645034 AACGCAGTCATCTTCGATGG 58.355 50.000 4.21 0.00 45.00 3.51
3183 3749 2.926200 AGAAACGCAGTCATCTTCGATG 59.074 45.455 0.00 0.00 45.00 3.84
3184 3750 3.238108 AGAAACGCAGTCATCTTCGAT 57.762 42.857 0.00 0.00 45.00 3.59
3185 3751 2.724977 AGAAACGCAGTCATCTTCGA 57.275 45.000 0.00 0.00 45.00 3.71
3186 3752 3.302092 GCATAGAAACGCAGTCATCTTCG 60.302 47.826 0.00 0.00 45.00 3.79
3187 3753 3.868077 AGCATAGAAACGCAGTCATCTTC 59.132 43.478 0.00 0.00 45.00 2.87
3188 3754 3.866651 AGCATAGAAACGCAGTCATCTT 58.133 40.909 0.00 0.00 45.00 2.40
3189 3755 3.533606 AGCATAGAAACGCAGTCATCT 57.466 42.857 0.00 0.00 45.00 2.90
3190 3756 3.001736 GGAAGCATAGAAACGCAGTCATC 59.998 47.826 0.00 0.00 45.00 2.92
3191 3757 2.939103 GGAAGCATAGAAACGCAGTCAT 59.061 45.455 0.00 0.00 45.00 3.06
3192 3758 2.289382 TGGAAGCATAGAAACGCAGTCA 60.289 45.455 0.00 0.00 45.00 3.41
3193 3759 2.346803 TGGAAGCATAGAAACGCAGTC 58.653 47.619 0.00 0.00 45.00 3.51
3195 3761 3.829886 TTTGGAAGCATAGAAACGCAG 57.170 42.857 0.00 0.00 0.00 5.18
3196 3762 3.505680 ACATTTGGAAGCATAGAAACGCA 59.494 39.130 0.00 0.00 0.00 5.24
3197 3763 4.096732 ACATTTGGAAGCATAGAAACGC 57.903 40.909 0.00 0.00 0.00 4.84
3198 3764 5.123186 TGGTACATTTGGAAGCATAGAAACG 59.877 40.000 0.00 0.00 0.00 3.60
3199 3765 6.509418 TGGTACATTTGGAAGCATAGAAAC 57.491 37.500 0.00 0.00 0.00 2.78
3200 3766 6.350110 GCTTGGTACATTTGGAAGCATAGAAA 60.350 38.462 0.00 0.00 39.30 2.52
3201 3767 5.125417 GCTTGGTACATTTGGAAGCATAGAA 59.875 40.000 0.00 0.00 39.30 2.10
3202 3768 4.640201 GCTTGGTACATTTGGAAGCATAGA 59.360 41.667 0.00 0.00 39.30 1.98
3203 3769 4.641989 AGCTTGGTACATTTGGAAGCATAG 59.358 41.667 0.00 0.00 41.24 2.23
3204 3770 4.398988 CAGCTTGGTACATTTGGAAGCATA 59.601 41.667 0.00 0.00 41.24 3.14
3205 3771 3.194116 CAGCTTGGTACATTTGGAAGCAT 59.806 43.478 0.00 0.00 41.24 3.79
3206 3772 2.557924 CAGCTTGGTACATTTGGAAGCA 59.442 45.455 0.00 0.00 41.24 3.91
3207 3773 2.558359 ACAGCTTGGTACATTTGGAAGC 59.442 45.455 0.00 0.00 39.30 3.86
3208 3774 3.820467 TCACAGCTTGGTACATTTGGAAG 59.180 43.478 0.00 0.00 39.30 3.46
3209 3775 3.826524 TCACAGCTTGGTACATTTGGAA 58.173 40.909 0.00 0.00 39.30 3.53
3210 3776 3.500448 TCACAGCTTGGTACATTTGGA 57.500 42.857 0.00 0.00 39.30 3.53
3211 3777 3.758023 TCATCACAGCTTGGTACATTTGG 59.242 43.478 0.00 0.00 39.30 3.28
3212 3778 5.571784 ATCATCACAGCTTGGTACATTTG 57.428 39.130 0.00 0.00 39.30 2.32
3213 3779 4.333649 CGATCATCACAGCTTGGTACATTT 59.666 41.667 0.00 0.00 39.30 2.32
3214 3780 3.873361 CGATCATCACAGCTTGGTACATT 59.127 43.478 0.00 0.00 39.30 2.71
3215 3781 3.461061 CGATCATCACAGCTTGGTACAT 58.539 45.455 0.00 0.00 39.30 2.29
3216 3782 2.892374 CGATCATCACAGCTTGGTACA 58.108 47.619 0.00 0.00 0.00 2.90
3217 3783 1.594862 GCGATCATCACAGCTTGGTAC 59.405 52.381 0.00 0.00 0.00 3.34
3218 3784 1.482182 AGCGATCATCACAGCTTGGTA 59.518 47.619 0.00 0.00 36.41 3.25
3219 3785 0.251354 AGCGATCATCACAGCTTGGT 59.749 50.000 0.00 0.00 36.41 3.67
3220 3786 2.133553 CTAGCGATCATCACAGCTTGG 58.866 52.381 0.00 0.00 40.73 3.61
3221 3787 3.051327 CTCTAGCGATCATCACAGCTTG 58.949 50.000 0.00 0.00 40.73 4.01
3222 3788 2.954989 TCTCTAGCGATCATCACAGCTT 59.045 45.455 0.00 0.00 40.73 3.74
3223 3789 2.553602 CTCTCTAGCGATCATCACAGCT 59.446 50.000 0.00 0.00 43.07 4.24
3224 3790 2.351641 CCTCTCTAGCGATCATCACAGC 60.352 54.545 0.00 0.00 0.00 4.40
3225 3791 2.351641 GCCTCTCTAGCGATCATCACAG 60.352 54.545 0.00 0.00 0.00 3.66
3226 3792 1.611006 GCCTCTCTAGCGATCATCACA 59.389 52.381 0.00 0.00 0.00 3.58
3227 3793 2.346099 GCCTCTCTAGCGATCATCAC 57.654 55.000 0.00 0.00 0.00 3.06
3244 3810 1.661509 GCAGTGCAAAGGTTTCGCC 60.662 57.895 11.09 0.00 37.58 5.54
3245 3811 0.936297 CAGCAGTGCAAAGGTTTCGC 60.936 55.000 19.20 0.00 0.00 4.70
3246 3812 0.662619 TCAGCAGTGCAAAGGTTTCG 59.337 50.000 19.20 0.00 0.00 3.46
3247 3813 1.000938 CCTCAGCAGTGCAAAGGTTTC 60.001 52.381 19.20 0.00 31.02 2.78
3248 3814 1.035139 CCTCAGCAGTGCAAAGGTTT 58.965 50.000 19.20 0.00 31.02 3.27
3249 3815 1.458639 GCCTCAGCAGTGCAAAGGTT 61.459 55.000 27.14 2.42 39.53 3.50
3250 3816 1.900498 GCCTCAGCAGTGCAAAGGT 60.900 57.895 27.14 3.11 39.53 3.50
3251 3817 2.960170 GCCTCAGCAGTGCAAAGG 59.040 61.111 24.32 24.32 39.53 3.11
3252 3818 2.559840 CGCCTCAGCAGTGCAAAG 59.440 61.111 19.20 13.46 39.83 2.77
3253 3819 2.979676 CCGCCTCAGCAGTGCAAA 60.980 61.111 19.20 3.38 39.83 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.