Multiple sequence alignment - TraesCS1B01G210600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G210600 chr1B 100.000 3859 0 0 1 3859 383215828 383219686 0.000000e+00 7127.0
1 TraesCS1B01G210600 chr1B 96.970 66 2 0 2997 3062 383218793 383218858 1.130000e-20 111.0
2 TraesCS1B01G210600 chr1B 96.970 66 2 0 2966 3031 383218824 383218889 1.130000e-20 111.0
3 TraesCS1B01G210600 chr1A 90.686 2405 101 42 683 3028 354188923 354191263 0.000000e+00 3086.0
4 TraesCS1B01G210600 chr1A 90.310 258 22 2 12 269 354187077 354187331 6.180000e-88 335.0
5 TraesCS1B01G210600 chr1A 83.333 330 34 14 2997 3312 354191198 354191520 6.310000e-73 285.0
6 TraesCS1B01G210600 chr1A 76.587 252 30 16 3587 3811 354192051 354192300 1.130000e-20 111.0
7 TraesCS1B01G210600 chr1A 83.544 79 10 3 234 309 66342494 66342572 1.920000e-08 71.3
8 TraesCS1B01G210600 chr1A 100.000 32 0 0 2966 2997 354191232 354191263 4.160000e-05 60.2
9 TraesCS1B01G210600 chr1D 92.203 1180 46 16 2090 3249 282184170 282185323 0.000000e+00 1628.0
10 TraesCS1B01G210600 chr1D 89.591 855 38 12 1182 2023 282182576 282183392 0.000000e+00 1038.0
11 TraesCS1B01G210600 chr1D 83.350 991 107 30 68 1013 282181280 282182257 0.000000e+00 863.0
12 TraesCS1B01G210600 chr1D 79.480 346 36 16 3520 3853 282185835 282186157 3.020000e-51 213.0
13 TraesCS1B01G210600 chr5D 90.265 113 11 0 1487 1599 275204869 275204757 8.640000e-32 148.0
14 TraesCS1B01G210600 chr5D 88.000 100 12 0 1500 1599 90695283 90695382 6.770000e-23 119.0
15 TraesCS1B01G210600 chr5D 87.000 100 13 0 1500 1599 302010554 302010653 3.150000e-21 113.0
16 TraesCS1B01G210600 chr7A 86.441 118 16 0 1482 1599 99583200 99583083 3.130000e-26 130.0
17 TraesCS1B01G210600 chr4D 86.441 118 12 2 1482 1599 297210134 297210021 4.050000e-25 126.0
18 TraesCS1B01G210600 chr4D 87.500 56 7 0 3519 3574 473830571 473830516 8.950000e-07 65.8
19 TraesCS1B01G210600 chr6B 88.000 100 12 0 1500 1599 422993969 422994068 6.770000e-23 119.0
20 TraesCS1B01G210600 chr7D 87.000 100 13 0 1500 1599 507232539 507232440 3.150000e-21 113.0
21 TraesCS1B01G210600 chr6D 84.043 94 13 2 218 310 397839716 397839624 5.310000e-14 89.8
22 TraesCS1B01G210600 chr4A 73.432 271 52 19 240 493 739454697 739454430 2.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G210600 chr1B 383215828 383219686 3858 False 2449.666667 7127 97.9800 1 3859 3 chr1B.!!$F1 3858
1 TraesCS1B01G210600 chr1A 354187077 354192300 5223 False 775.440000 3086 88.1832 12 3811 5 chr1A.!!$F2 3799
2 TraesCS1B01G210600 chr1D 282181280 282186157 4877 False 935.500000 1628 86.1560 68 3853 4 chr1D.!!$F1 3785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 1493 0.105709 TCGAGGCCATAGGGATGACA 60.106 55.0 5.01 0.00 34.73 3.58 F
466 1547 0.109226 GTCCTGACGGGTCTTTCTCG 60.109 60.0 0.00 0.00 46.72 4.04 F
2141 4319 0.110509 CTGCGTTGCTACTGCTGTTG 60.111 55.0 0.09 0.58 40.48 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 4319 0.109597 CAGCAATGGCCTGAAACGAC 60.110 55.0 3.32 0.0 42.56 4.34 R
2231 4409 0.320374 TCACGTGGAATGTCAGGGAC 59.680 55.0 17.00 0.0 30.19 4.46 R
3690 6302 0.179006 GGATTTGGCTAGGGCTCCTG 60.179 60.0 4.16 0.0 38.73 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.177783 TGCGTGCGAAAAACTAGATATGA 58.822 39.130 0.00 0.00 0.00 2.15
51 52 4.483476 AAAAGAACTATTTTGCTCGCGT 57.517 36.364 5.77 0.00 31.30 6.01
77 78 2.818432 ACACCTTAAGATGTCTCGTCGT 59.182 45.455 3.36 0.00 0.00 4.34
78 79 4.005650 ACACCTTAAGATGTCTCGTCGTA 58.994 43.478 3.36 0.00 0.00 3.43
138 152 2.152016 CGTATGCGATCTCTAGGACCA 58.848 52.381 0.00 0.00 41.33 4.02
141 155 1.847328 TGCGATCTCTAGGACCAACA 58.153 50.000 0.00 0.00 0.00 3.33
146 160 3.526534 GATCTCTAGGACCAACACAAGC 58.473 50.000 0.00 0.00 0.00 4.01
150 164 1.000955 CTAGGACCAACACAAGCGAGT 59.999 52.381 0.00 0.00 0.00 4.18
176 190 1.818674 GGTACATTTGGCAACCTGGAG 59.181 52.381 0.00 0.00 0.00 3.86
192 206 1.834822 GAGCCTCCGGACCTATGCT 60.835 63.158 0.00 3.49 0.00 3.79
193 207 1.811645 GAGCCTCCGGACCTATGCTC 61.812 65.000 0.00 9.61 38.51 4.26
202 216 1.340568 GGACCTATGCTCCCGAGTTAC 59.659 57.143 0.00 0.00 0.00 2.50
203 217 2.029623 GACCTATGCTCCCGAGTTACA 58.970 52.381 0.00 0.00 0.00 2.41
228 242 8.026607 CAGTAAATTTGATGTTTTGGACGGTAT 58.973 33.333 0.00 0.00 0.00 2.73
311 1231 5.861787 GGCCTATTAAACAACACACAATCAC 59.138 40.000 0.00 0.00 0.00 3.06
321 1241 7.750229 ACAACACACAATCACTCAATAGATT 57.250 32.000 0.00 0.00 34.96 2.40
323 1243 8.077991 ACAACACACAATCACTCAATAGATTTG 58.922 33.333 0.00 0.00 32.43 2.32
364 1443 7.613551 TCTTCTTTACCCTAGTGTTCTTCTT 57.386 36.000 0.00 0.00 0.00 2.52
365 1444 8.030913 TCTTCTTTACCCTAGTGTTCTTCTTT 57.969 34.615 0.00 0.00 0.00 2.52
367 1446 7.613551 TCTTTACCCTAGTGTTCTTCTTTCT 57.386 36.000 0.00 0.00 0.00 2.52
374 1453 6.260271 CCCTAGTGTTCTTCTTTCTCGTTTTT 59.740 38.462 0.00 0.00 0.00 1.94
396 1475 4.185413 TTCGATGGCAGCGAACTC 57.815 55.556 33.50 4.88 42.17 3.01
397 1476 1.805539 TTCGATGGCAGCGAACTCG 60.806 57.895 33.50 17.34 42.17 4.18
398 1477 2.202610 CGATGGCAGCGAACTCGA 60.203 61.111 22.19 0.00 43.02 4.04
399 1478 2.226896 CGATGGCAGCGAACTCGAG 61.227 63.158 22.19 11.84 43.02 4.04
401 1480 4.742201 TGGCAGCGAACTCGAGGC 62.742 66.667 18.41 10.77 43.02 4.70
403 1482 4.742201 GCAGCGAACTCGAGGCCA 62.742 66.667 18.41 0.00 43.02 5.36
404 1483 2.185350 CAGCGAACTCGAGGCCAT 59.815 61.111 18.41 0.00 43.02 4.40
405 1484 1.437573 CAGCGAACTCGAGGCCATA 59.562 57.895 18.41 0.00 43.02 2.74
406 1485 0.596083 CAGCGAACTCGAGGCCATAG 60.596 60.000 18.41 0.71 43.02 2.23
408 1487 1.364171 CGAACTCGAGGCCATAGGG 59.636 63.158 18.41 0.00 43.02 3.53
409 1488 1.107538 CGAACTCGAGGCCATAGGGA 61.108 60.000 18.41 0.00 43.02 4.20
410 1489 1.343069 GAACTCGAGGCCATAGGGAT 58.657 55.000 18.41 0.00 35.59 3.85
411 1490 1.001406 GAACTCGAGGCCATAGGGATG 59.999 57.143 18.41 0.00 35.59 3.51
412 1491 0.188587 ACTCGAGGCCATAGGGATGA 59.811 55.000 18.41 0.00 34.73 2.92
413 1492 0.605589 CTCGAGGCCATAGGGATGAC 59.394 60.000 5.01 0.00 34.73 3.06
414 1493 0.105709 TCGAGGCCATAGGGATGACA 60.106 55.000 5.01 0.00 34.73 3.58
415 1494 0.758734 CGAGGCCATAGGGATGACAA 59.241 55.000 5.01 0.00 34.73 3.18
416 1495 1.270518 CGAGGCCATAGGGATGACAAG 60.271 57.143 5.01 0.00 34.73 3.16
426 1507 2.761208 AGGGATGACAAGTCGACTTAGG 59.239 50.000 29.28 20.33 34.28 2.69
428 1509 2.496470 GGATGACAAGTCGACTTAGGGT 59.504 50.000 29.28 22.60 34.28 4.34
430 1511 4.202030 GGATGACAAGTCGACTTAGGGTAG 60.202 50.000 29.28 18.24 34.28 3.18
432 1513 1.823610 ACAAGTCGACTTAGGGTAGCC 59.176 52.381 29.28 1.60 34.28 3.93
433 1514 1.822990 CAAGTCGACTTAGGGTAGCCA 59.177 52.381 29.28 0.00 34.28 4.75
443 1524 4.456806 GGTAGCCAATAGCCACCG 57.543 61.111 0.00 0.00 43.63 4.94
445 1526 1.153249 GTAGCCAATAGCCACCGCA 60.153 57.895 0.00 0.00 45.47 5.69
456 1537 2.815211 CACCGCATGTCCTGACGG 60.815 66.667 5.75 5.75 44.75 4.79
459 1540 2.509336 CGCATGTCCTGACGGGTC 60.509 66.667 0.00 0.00 36.25 4.46
460 1541 2.982130 GCATGTCCTGACGGGTCT 59.018 61.111 0.00 0.00 36.25 3.85
461 1542 1.296715 GCATGTCCTGACGGGTCTT 59.703 57.895 0.00 0.00 36.25 3.01
463 1544 1.726853 CATGTCCTGACGGGTCTTTC 58.273 55.000 0.00 0.00 36.25 2.62
466 1547 0.109226 GTCCTGACGGGTCTTTCTCG 60.109 60.000 0.00 0.00 46.72 4.04
467 1548 1.215647 CCTGACGGGTCTTTCTCGG 59.784 63.158 0.00 0.00 45.43 4.63
469 1550 0.109226 CTGACGGGTCTTTCTCGGAC 60.109 60.000 0.00 0.00 45.43 4.79
471 1552 0.602060 GACGGGTCTTTCTCGGACTT 59.398 55.000 0.00 0.00 45.43 3.01
472 1553 0.317479 ACGGGTCTTTCTCGGACTTG 59.683 55.000 0.00 0.00 45.43 3.16
474 1555 1.797025 GGGTCTTTCTCGGACTTGTG 58.203 55.000 0.00 0.00 34.47 3.33
475 1556 1.343465 GGGTCTTTCTCGGACTTGTGA 59.657 52.381 0.00 0.00 34.47 3.58
478 1559 2.036089 GTCTTTCTCGGACTTGTGAGGT 59.964 50.000 0.00 0.00 33.00 3.85
481 1563 2.526304 TCTCGGACTTGTGAGGTTTG 57.474 50.000 0.00 0.00 33.00 2.93
540 1622 3.213402 CTCCCGACGAGGCTCCTC 61.213 72.222 9.32 6.17 39.21 3.71
548 1630 2.716017 CGAGGCTCCTCTGGTCACC 61.716 68.421 9.32 0.00 40.69 4.02
575 1657 0.227234 CGTATCACGCTCGATGTTGC 59.773 55.000 0.00 0.00 33.65 4.17
581 1663 3.395669 GCTCGATGTTGCGGGTAC 58.604 61.111 0.00 0.00 33.40 3.34
582 1664 1.447140 GCTCGATGTTGCGGGTACA 60.447 57.895 0.00 0.00 33.40 2.90
583 1665 1.693083 GCTCGATGTTGCGGGTACAC 61.693 60.000 0.00 0.00 33.40 2.90
584 1666 1.410737 CTCGATGTTGCGGGTACACG 61.411 60.000 14.60 14.60 0.00 4.49
586 1668 2.744709 ATGTTGCGGGTACACGGC 60.745 61.111 20.88 12.18 44.86 5.68
591 1673 3.560278 GCGGGTACACGGCGAATG 61.560 66.667 20.88 4.57 35.64 2.67
592 1674 2.125832 CGGGTACACGGCGAATGT 60.126 61.111 16.62 11.62 0.00 2.71
593 1675 2.162754 CGGGTACACGGCGAATGTC 61.163 63.158 16.62 2.89 0.00 3.06
608 1857 0.951558 ATGTCGGTGCAAACAACCTC 59.048 50.000 0.00 0.00 0.00 3.85
618 1867 0.893727 AAACAACCTCGGATGCACCC 60.894 55.000 0.00 0.00 34.64 4.61
619 1868 2.063015 AACAACCTCGGATGCACCCA 62.063 55.000 0.00 0.00 34.64 4.51
620 1869 1.077501 CAACCTCGGATGCACCCAT 60.078 57.895 0.00 0.00 34.64 4.00
625 1874 1.902508 CCTCGGATGCACCCATACTAT 59.097 52.381 0.00 0.00 34.64 2.12
626 1875 2.303022 CCTCGGATGCACCCATACTATT 59.697 50.000 0.00 0.00 34.64 1.73
636 1885 4.302455 CACCCATACTATTCTCAAGAGCG 58.698 47.826 0.00 0.00 0.00 5.03
637 1886 4.038042 CACCCATACTATTCTCAAGAGCGA 59.962 45.833 0.00 0.00 0.00 4.93
642 1891 4.630894 ACTATTCTCAAGAGCGAGAGTG 57.369 45.455 0.00 0.00 42.81 3.51
675 1924 1.063717 CCATATGTCCAAAGTGGCCCT 60.064 52.381 0.00 0.00 37.47 5.19
676 1925 2.174639 CCATATGTCCAAAGTGGCCCTA 59.825 50.000 0.00 0.00 37.47 3.53
677 1926 3.214328 CATATGTCCAAAGTGGCCCTAC 58.786 50.000 0.00 0.00 37.47 3.18
688 1938 3.259592 GGCCCTACCAAACGAACAT 57.740 52.632 0.00 0.00 38.86 2.71
693 1944 1.199097 CCTACCAAACGAACATGCACC 59.801 52.381 0.00 0.00 0.00 5.01
722 1973 0.164647 AGACGACGAAACGTACTCGG 59.835 55.000 20.18 8.99 46.52 4.63
728 1979 0.171903 CGAAACGTACTCGGTCCCAT 59.828 55.000 11.15 0.00 41.85 4.00
855 2119 5.508657 GGTCATATTACCGTTGTACTCTCCC 60.509 48.000 0.00 0.00 0.00 4.30
972 2250 2.184167 CCTCTCCTCGCGTCTCTCC 61.184 68.421 5.77 0.00 0.00 3.71
1032 2315 2.669569 GCGCAAGAACCAGCCAGA 60.670 61.111 0.30 0.00 43.02 3.86
1127 2415 0.179084 TGATCGACCGCAATTCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
1137 2425 2.073101 AATTCCCTCGCTCCCTCCC 61.073 63.158 0.00 0.00 0.00 4.30
1145 2433 3.934962 GCTCCCTCCCAGATCGCC 61.935 72.222 0.00 0.00 0.00 5.54
1153 2441 1.480137 CTCCCAGATCGCCTATGGATC 59.520 57.143 0.00 0.00 38.62 3.36
1165 2453 2.163815 CCTATGGATCCCGTCGTGATAC 59.836 54.545 9.90 0.00 0.00 2.24
1182 2470 5.530712 GTGATACTTCTACTCGGAAATCCC 58.469 45.833 0.00 0.00 0.00 3.85
1184 2472 5.302059 TGATACTTCTACTCGGAAATCCCTG 59.698 44.000 0.00 0.00 0.00 4.45
1187 2475 2.816411 TCTACTCGGAAATCCCTGTGT 58.184 47.619 0.00 0.00 0.00 3.72
1278 2714 1.078143 GCAGATCCAAGAAGGCCGT 60.078 57.895 0.00 0.00 37.29 5.68
1280 2716 0.462759 CAGATCCAAGAAGGCCGTCC 60.463 60.000 15.64 0.00 37.29 4.79
1767 3203 8.567104 TCAAAGATCGATTTTGTCAATTTCTGA 58.433 29.630 21.58 9.79 36.97 3.27
1773 3209 6.365789 TCGATTTTGTCAATTTCTGATTTGCC 59.634 34.615 0.00 0.00 36.14 4.52
1776 3212 4.424061 TGTCAATTTCTGATTTGCCTCG 57.576 40.909 0.00 0.00 36.14 4.63
1786 3222 5.730550 TCTGATTTGCCTCGTATGTTTAGT 58.269 37.500 0.00 0.00 0.00 2.24
1787 3223 6.170506 TCTGATTTGCCTCGTATGTTTAGTT 58.829 36.000 0.00 0.00 0.00 2.24
1788 3224 7.324935 TCTGATTTGCCTCGTATGTTTAGTTA 58.675 34.615 0.00 0.00 0.00 2.24
1829 3265 5.069516 ACTCAAAGATCAAACCTTGCATTGT 59.930 36.000 0.00 0.00 0.00 2.71
1830 3266 6.265196 ACTCAAAGATCAAACCTTGCATTGTA 59.735 34.615 0.00 0.00 0.00 2.41
1831 3267 6.446318 TCAAAGATCAAACCTTGCATTGTAC 58.554 36.000 0.00 0.00 0.00 2.90
1832 3268 6.265196 TCAAAGATCAAACCTTGCATTGTACT 59.735 34.615 0.00 0.00 0.00 2.73
1845 3281 8.573885 CCTTGCATTGTACTTATTGATCATCAT 58.426 33.333 0.00 0.00 0.00 2.45
1952 3418 3.965292 CATAGCCTGCTGTGAAAGATG 57.035 47.619 10.00 0.00 37.35 2.90
1993 3461 6.148811 ACCAAAGATGTTTATTGTGTCCTACG 59.851 38.462 0.00 0.00 0.00 3.51
2000 3468 7.225784 TGTTTATTGTGTCCTACGGTACTTA 57.774 36.000 0.00 0.00 0.00 2.24
2084 3552 3.785486 CTGTGAATGTCGATGCCTCTAA 58.215 45.455 0.00 0.00 0.00 2.10
2088 4265 5.294306 TGTGAATGTCGATGCCTCTAATTTC 59.706 40.000 0.00 0.00 0.00 2.17
2096 4273 0.931005 GCCTCTAATTTCTGCCGTCG 59.069 55.000 0.00 0.00 0.00 5.12
2107 4285 4.272100 GCCGTCGGCTCTTTGTTA 57.728 55.556 28.98 0.00 46.69 2.41
2110 4288 0.788391 CCGTCGGCTCTTTGTTACAC 59.212 55.000 0.00 0.00 0.00 2.90
2141 4319 0.110509 CTGCGTTGCTACTGCTGTTG 60.111 55.000 0.09 0.58 40.48 3.33
2143 4321 0.110644 GCGTTGCTACTGCTGTTGTC 60.111 55.000 0.09 0.00 40.48 3.18
2146 4324 1.597663 GTTGCTACTGCTGTTGTCGTT 59.402 47.619 0.09 0.00 40.48 3.85
2147 4325 1.948104 TGCTACTGCTGTTGTCGTTT 58.052 45.000 0.09 0.00 40.48 3.60
2297 4475 1.006102 CAGCTCGTCGGTTTGGTCT 60.006 57.895 0.00 0.00 0.00 3.85
2330 4514 0.039764 TCAGCTCCGAGGAGAAGGAA 59.960 55.000 22.32 0.38 44.53 3.36
2334 4518 1.398692 CTCCGAGGAGAAGGAAGAGG 58.601 60.000 13.69 0.00 44.53 3.69
2335 4519 1.000496 TCCGAGGAGAAGGAAGAGGA 59.000 55.000 0.00 0.00 32.86 3.71
2336 4520 1.064314 TCCGAGGAGAAGGAAGAGGAG 60.064 57.143 0.00 0.00 32.86 3.69
2337 4521 1.398692 CGAGGAGAAGGAAGAGGAGG 58.601 60.000 0.00 0.00 0.00 4.30
2338 4522 1.064314 CGAGGAGAAGGAAGAGGAGGA 60.064 57.143 0.00 0.00 0.00 3.71
2339 4523 2.424234 CGAGGAGAAGGAAGAGGAGGAT 60.424 54.545 0.00 0.00 0.00 3.24
2365 4549 2.879233 TTGACACCGTGGGAGAGCC 61.879 63.158 3.03 0.00 0.00 4.70
2366 4550 2.997897 GACACCGTGGGAGAGCCT 60.998 66.667 3.03 0.00 0.00 4.58
2390 4574 5.713389 TGAAGAAGAGTACAATACCGAGGAA 59.287 40.000 0.00 0.00 0.00 3.36
2522 4706 1.134936 GCGGAGGAGAAGAAGAAGGTC 60.135 57.143 0.00 0.00 0.00 3.85
2552 4736 3.241530 TTCGAGGGCAGGCACACT 61.242 61.111 0.00 0.00 0.00 3.55
2681 4865 1.930908 ATCTCCGGTTCCACGACGAC 61.931 60.000 0.00 0.00 35.47 4.34
2833 5024 7.031226 TGGACATGCTATCTTTTATGCTTTC 57.969 36.000 0.00 0.00 0.00 2.62
2837 5028 9.578439 GACATGCTATCTTTTATGCTTTCTTTT 57.422 29.630 0.00 0.00 0.00 2.27
2838 5029 9.933723 ACATGCTATCTTTTATGCTTTCTTTTT 57.066 25.926 0.00 0.00 0.00 1.94
2871 5062 3.071479 TCGTTATTGCTGGTTCCAGTTC 58.929 45.455 18.42 5.35 36.52 3.01
2884 5085 3.969287 TCCAGTTCTTCTGAGGACATG 57.031 47.619 0.00 0.00 46.27 3.21
2885 5086 2.568956 TCCAGTTCTTCTGAGGACATGG 59.431 50.000 11.25 11.25 46.27 3.66
2886 5087 2.304180 CCAGTTCTTCTGAGGACATGGT 59.696 50.000 9.91 0.00 46.27 3.55
2887 5088 3.332919 CAGTTCTTCTGAGGACATGGTG 58.667 50.000 0.00 0.00 46.27 4.17
2888 5089 2.304180 AGTTCTTCTGAGGACATGGTGG 59.696 50.000 0.00 0.00 33.47 4.61
2889 5090 2.030027 TCTTCTGAGGACATGGTGGT 57.970 50.000 0.00 0.00 0.00 4.16
2890 5091 3.184382 TCTTCTGAGGACATGGTGGTA 57.816 47.619 0.00 0.00 0.00 3.25
2891 5092 2.832129 TCTTCTGAGGACATGGTGGTAC 59.168 50.000 0.00 0.00 0.00 3.34
2892 5093 2.319025 TCTGAGGACATGGTGGTACA 57.681 50.000 0.00 0.00 0.00 2.90
2893 5094 2.832838 TCTGAGGACATGGTGGTACAT 58.167 47.619 0.00 0.00 44.52 2.29
2894 5095 3.181329 TCTGAGGACATGGTGGTACATT 58.819 45.455 0.00 0.00 44.52 2.71
2933 5134 7.094805 GGTTCAGTTAGTGCAACATATCTCAAA 60.095 37.037 0.00 0.00 41.43 2.69
2942 5143 8.251750 GTGCAACATATCTCAAAGTTGTACTA 57.748 34.615 14.92 0.00 46.72 1.82
3024 5256 6.656270 TCATGCTCATTCTGTGTATTCAGTTT 59.344 34.615 0.00 0.00 36.85 2.66
3025 5257 6.882610 TGCTCATTCTGTGTATTCAGTTTT 57.117 33.333 0.00 0.00 36.85 2.43
3026 5258 6.902341 TGCTCATTCTGTGTATTCAGTTTTC 58.098 36.000 0.00 0.00 36.85 2.29
3027 5259 6.486320 TGCTCATTCTGTGTATTCAGTTTTCA 59.514 34.615 0.00 0.00 36.85 2.69
3028 5260 7.020010 GCTCATTCTGTGTATTCAGTTTTCAG 58.980 38.462 0.00 0.00 36.85 3.02
3029 5261 7.308229 GCTCATTCTGTGTATTCAGTTTTCAGT 60.308 37.037 0.00 0.00 36.85 3.41
3030 5262 8.450578 TCATTCTGTGTATTCAGTTTTCAGTT 57.549 30.769 0.00 0.00 36.85 3.16
3031 5263 8.559536 TCATTCTGTGTATTCAGTTTTCAGTTC 58.440 33.333 0.00 0.00 36.85 3.01
3032 5264 8.562892 CATTCTGTGTATTCAGTTTTCAGTTCT 58.437 33.333 0.00 0.00 36.85 3.01
3033 5265 8.506168 TTCTGTGTATTCAGTTTTCAGTTCTT 57.494 30.769 0.00 0.00 36.85 2.52
3034 5266 7.919690 TCTGTGTATTCAGTTTTCAGTTCTTG 58.080 34.615 0.00 0.00 36.85 3.02
3035 5267 6.494842 TGTGTATTCAGTTTTCAGTTCTTGC 58.505 36.000 0.00 0.00 0.00 4.01
3036 5268 6.318648 TGTGTATTCAGTTTTCAGTTCTTGCT 59.681 34.615 0.00 0.00 0.00 3.91
3037 5269 6.853362 GTGTATTCAGTTTTCAGTTCTTGCTC 59.147 38.462 0.00 0.00 0.00 4.26
3038 5270 6.542005 TGTATTCAGTTTTCAGTTCTTGCTCA 59.458 34.615 0.00 0.00 0.00 4.26
3039 5271 6.645790 ATTCAGTTTTCAGTTCTTGCTCAT 57.354 33.333 0.00 0.00 0.00 2.90
3040 5272 6.455360 TTCAGTTTTCAGTTCTTGCTCATT 57.545 33.333 0.00 0.00 0.00 2.57
3041 5273 6.064846 TCAGTTTTCAGTTCTTGCTCATTC 57.935 37.500 0.00 0.00 0.00 2.67
3042 5274 5.824624 TCAGTTTTCAGTTCTTGCTCATTCT 59.175 36.000 0.00 0.00 0.00 2.40
3043 5275 6.017605 TCAGTTTTCAGTTCTTGCTCATTCTC 60.018 38.462 0.00 0.00 0.00 2.87
3044 5276 6.017275 CAGTTTTCAGTTCTTGCTCATTCTCT 60.017 38.462 0.00 0.00 0.00 3.10
3045 5277 5.936686 TTTCAGTTCTTGCTCATTCTCTG 57.063 39.130 0.00 0.00 0.00 3.35
3046 5278 4.613925 TCAGTTCTTGCTCATTCTCTGT 57.386 40.909 0.00 0.00 0.00 3.41
3047 5279 5.728637 TCAGTTCTTGCTCATTCTCTGTA 57.271 39.130 0.00 0.00 0.00 2.74
3048 5280 6.291648 TCAGTTCTTGCTCATTCTCTGTAT 57.708 37.500 0.00 0.00 0.00 2.29
3049 5281 6.705302 TCAGTTCTTGCTCATTCTCTGTATT 58.295 36.000 0.00 0.00 0.00 1.89
3050 5282 6.815641 TCAGTTCTTGCTCATTCTCTGTATTC 59.184 38.462 0.00 0.00 0.00 1.75
3051 5283 6.592994 CAGTTCTTGCTCATTCTCTGTATTCA 59.407 38.462 0.00 0.00 0.00 2.57
3052 5284 6.817641 AGTTCTTGCTCATTCTCTGTATTCAG 59.182 38.462 0.00 0.00 42.54 3.02
3053 5285 6.291648 TCTTGCTCATTCTCTGTATTCAGT 57.708 37.500 0.00 0.00 41.91 3.41
3054 5286 6.705302 TCTTGCTCATTCTCTGTATTCAGTT 58.295 36.000 0.00 0.00 41.91 3.16
3138 5373 1.266178 GGTACTTTGGGGCATTTGCT 58.734 50.000 2.12 0.00 41.70 3.91
3144 5379 3.294214 CTTTGGGGCATTTGCTATCTCT 58.706 45.455 2.12 0.00 41.70 3.10
3145 5380 2.645838 TGGGGCATTTGCTATCTCTC 57.354 50.000 2.12 0.00 41.70 3.20
3147 5382 2.241941 TGGGGCATTTGCTATCTCTCAA 59.758 45.455 2.12 0.00 41.70 3.02
3148 5383 3.290710 GGGGCATTTGCTATCTCTCAAA 58.709 45.455 2.12 0.00 41.70 2.69
3149 5384 3.893813 GGGGCATTTGCTATCTCTCAAAT 59.106 43.478 2.12 0.00 41.88 2.32
3152 5387 5.301298 GGGCATTTGCTATCTCTCAAATTCT 59.699 40.000 2.12 0.00 39.92 2.40
3188 5426 5.349817 TGAAAATGCAACATGACGTTTGTTT 59.650 32.000 13.29 1.15 35.18 2.83
3198 5436 6.086222 ACATGACGTTTGTTTATGCTCATTC 58.914 36.000 0.00 0.00 0.00 2.67
3199 5437 4.707563 TGACGTTTGTTTATGCTCATTCG 58.292 39.130 0.00 0.00 0.00 3.34
3201 5439 3.119990 ACGTTTGTTTATGCTCATTCGGG 60.120 43.478 0.00 0.00 0.00 5.14
3209 5447 0.038166 TGCTCATTCGGGGCTTTTCT 59.962 50.000 0.00 0.00 0.00 2.52
3237 5484 3.826157 CTGTTTGGAAAATGGACTGCCTA 59.174 43.478 0.00 0.00 34.31 3.93
3253 5501 1.202818 GCCTAGATCCCAATGGACACC 60.203 57.143 0.00 0.00 45.58 4.16
3254 5502 2.126882 CCTAGATCCCAATGGACACCA 58.873 52.381 0.00 0.00 45.58 4.17
3293 5541 6.662414 TCGAATACAAAATGAGGACATGAC 57.338 37.500 0.00 0.00 36.79 3.06
3308 5556 5.182001 AGGACATGACAAATACAAGAAGCAC 59.818 40.000 0.00 0.00 0.00 4.40
3309 5557 5.048782 GGACATGACAAATACAAGAAGCACA 60.049 40.000 0.00 0.00 0.00 4.57
3310 5558 6.005583 ACATGACAAATACAAGAAGCACAG 57.994 37.500 0.00 0.00 0.00 3.66
3311 5559 5.532406 ACATGACAAATACAAGAAGCACAGT 59.468 36.000 0.00 0.00 0.00 3.55
3314 5604 4.460263 ACAAATACAAGAAGCACAGTCCA 58.540 39.130 0.00 0.00 0.00 4.02
3317 5607 2.717639 ACAAGAAGCACAGTCCAAGT 57.282 45.000 0.00 0.00 0.00 3.16
3319 5609 4.150897 ACAAGAAGCACAGTCCAAGTAA 57.849 40.909 0.00 0.00 0.00 2.24
3321 5611 4.947388 ACAAGAAGCACAGTCCAAGTAAAA 59.053 37.500 0.00 0.00 0.00 1.52
3351 5641 4.806640 AAGAGCACCCACAATTTATTGG 57.193 40.909 7.33 0.00 41.96 3.16
3352 5642 3.778265 AGAGCACCCACAATTTATTGGT 58.222 40.909 7.33 0.00 41.96 3.67
3427 5879 4.856607 GGAGCGAGTCGAAGGCGG 62.857 72.222 18.61 0.00 36.95 6.13
3440 5892 2.280186 GGCGGGTCGTCATCATCC 60.280 66.667 0.00 0.00 0.00 3.51
3447 5899 1.403814 GTCGTCATCATCCTCCCTCA 58.596 55.000 0.00 0.00 0.00 3.86
3448 5900 1.757118 GTCGTCATCATCCTCCCTCAA 59.243 52.381 0.00 0.00 0.00 3.02
3450 5902 2.366590 TCGTCATCATCCTCCCTCAATG 59.633 50.000 0.00 0.00 0.00 2.82
3454 5906 4.760715 GTCATCATCCTCCCTCAATGATTG 59.239 45.833 0.00 0.00 37.90 2.67
3455 5907 4.414514 TCATCATCCTCCCTCAATGATTGT 59.585 41.667 4.93 0.00 37.90 2.71
3456 5908 4.160642 TCATCCTCCCTCAATGATTGTG 57.839 45.455 4.93 2.58 0.00 3.33
3457 5909 3.524789 TCATCCTCCCTCAATGATTGTGT 59.475 43.478 4.93 0.00 0.00 3.72
3458 5910 3.634397 TCCTCCCTCAATGATTGTGTC 57.366 47.619 4.93 0.00 0.00 3.67
3460 5912 2.025981 CCTCCCTCAATGATTGTGTCCA 60.026 50.000 4.93 0.00 0.00 4.02
3461 5913 3.561960 CCTCCCTCAATGATTGTGTCCAA 60.562 47.826 4.93 0.00 34.45 3.53
3462 5914 3.420893 TCCCTCAATGATTGTGTCCAAC 58.579 45.455 4.93 0.00 32.26 3.77
3463 5915 3.074390 TCCCTCAATGATTGTGTCCAACT 59.926 43.478 4.93 0.00 32.26 3.16
3464 5916 3.828451 CCCTCAATGATTGTGTCCAACTT 59.172 43.478 4.93 0.00 32.26 2.66
3465 5917 4.281688 CCCTCAATGATTGTGTCCAACTTT 59.718 41.667 4.93 0.00 32.26 2.66
3476 5975 3.573967 GTGTCCAACTTTCCCATGTCATT 59.426 43.478 0.00 0.00 0.00 2.57
3554 6165 6.834959 AGAATATGTATGTCTCGTTGCAAG 57.165 37.500 0.00 0.00 0.00 4.01
3558 6169 2.009774 GTATGTCTCGTTGCAAGGCAT 58.990 47.619 14.22 11.37 41.70 4.40
3583 6194 4.243270 ACAATTAGCTAGTCGTTGACACC 58.757 43.478 13.63 0.00 34.60 4.16
3585 6196 1.913778 TAGCTAGTCGTTGACACCCA 58.086 50.000 0.00 0.00 34.60 4.51
3592 6203 0.391597 TCGTTGACACCCAGGAAGTC 59.608 55.000 4.69 4.69 0.00 3.01
3594 6205 0.391597 GTTGACACCCAGGAAGTCGA 59.608 55.000 6.72 2.82 35.09 4.20
3608 6219 1.153881 GTCGACGTGCTTAGACCCC 60.154 63.158 0.00 0.00 0.00 4.95
3613 6224 1.001633 GACGTGCTTAGACCCCAAAGA 59.998 52.381 0.00 0.00 0.00 2.52
3620 6231 3.832490 GCTTAGACCCCAAAGAACCAATT 59.168 43.478 0.00 0.00 0.00 2.32
3626 6237 2.562738 CCCCAAAGAACCAATTCTCCAC 59.437 50.000 0.00 0.00 44.82 4.02
3628 6239 3.640967 CCCAAAGAACCAATTCTCCACAA 59.359 43.478 0.00 0.00 44.82 3.33
3657 6269 9.398170 ACAAATATCGTTGATGAAGAAAAACAG 57.602 29.630 0.00 0.00 32.59 3.16
3690 6302 3.746940 ACCATACCTACAAACACACACC 58.253 45.455 0.00 0.00 0.00 4.16
3692 6304 3.751175 CCATACCTACAAACACACACCAG 59.249 47.826 0.00 0.00 0.00 4.00
3698 6310 1.152756 AAACACACACCAGGAGCCC 60.153 57.895 0.00 0.00 0.00 5.19
3700 6312 0.766674 AACACACACCAGGAGCCCTA 60.767 55.000 0.00 0.00 29.64 3.53
3703 6315 2.689034 ACACCAGGAGCCCTAGCC 60.689 66.667 0.00 0.00 41.25 3.93
3704 6316 2.688666 CACCAGGAGCCCTAGCCA 60.689 66.667 0.00 0.00 41.25 4.75
3713 6325 2.310052 GGAGCCCTAGCCAAATCCATAT 59.690 50.000 0.00 0.00 41.25 1.78
3715 6327 2.042162 AGCCCTAGCCAAATCCATATGG 59.958 50.000 16.25 16.25 41.25 2.74
3755 6382 3.305064 GCAAATCCGCTAGAAAAACACCA 60.305 43.478 0.00 0.00 0.00 4.17
3756 6383 4.794655 GCAAATCCGCTAGAAAAACACCAA 60.795 41.667 0.00 0.00 0.00 3.67
3768 6395 0.827507 AACACCAACATGCACCCTCC 60.828 55.000 0.00 0.00 0.00 4.30
3769 6396 1.978617 CACCAACATGCACCCTCCC 60.979 63.158 0.00 0.00 0.00 4.30
3770 6397 2.751436 CCAACATGCACCCTCCCG 60.751 66.667 0.00 0.00 0.00 5.14
3772 6399 3.650950 AACATGCACCCTCCCGCT 61.651 61.111 0.00 0.00 0.00 5.52
3773 6400 3.628646 AACATGCACCCTCCCGCTC 62.629 63.158 0.00 0.00 0.00 5.03
3817 6455 4.688021 GCGAAGGACATCATTCTTACTCT 58.312 43.478 4.91 0.00 34.79 3.24
3822 6460 7.040062 CGAAGGACATCATTCTTACTCTAGGAT 60.040 40.741 4.91 0.00 34.79 3.24
3853 6491 2.747022 CACCCCGACCATGACACA 59.253 61.111 0.00 0.00 0.00 3.72
3854 6492 1.072332 CACCCCGACCATGACACAA 59.928 57.895 0.00 0.00 0.00 3.33
3855 6493 0.536233 CACCCCGACCATGACACAAA 60.536 55.000 0.00 0.00 0.00 2.83
3856 6494 0.183971 ACCCCGACCATGACACAAAA 59.816 50.000 0.00 0.00 0.00 2.44
3857 6495 1.323412 CCCCGACCATGACACAAAAA 58.677 50.000 0.00 0.00 0.00 1.94
3858 6496 1.000717 CCCCGACCATGACACAAAAAC 60.001 52.381 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.064207 TCTAGTTTTTCGCACGCATCTT 58.936 40.909 0.00 0.00 0.00 2.40
1 2 2.683968 TCTAGTTTTTCGCACGCATCT 58.316 42.857 0.00 0.00 0.00 2.90
2 3 3.658351 ATCTAGTTTTTCGCACGCATC 57.342 42.857 0.00 0.00 0.00 3.91
3 4 4.808895 TCATATCTAGTTTTTCGCACGCAT 59.191 37.500 0.00 0.00 0.00 4.73
4 5 4.177783 TCATATCTAGTTTTTCGCACGCA 58.822 39.130 0.00 0.00 0.00 5.24
5 6 4.772046 TCATATCTAGTTTTTCGCACGC 57.228 40.909 0.00 0.00 0.00 5.34
34 35 6.407181 GTGTATTTACGCGAGCAAAATAGTTC 59.593 38.462 15.93 6.63 34.74 3.01
35 36 6.245724 GTGTATTTACGCGAGCAAAATAGTT 58.754 36.000 15.93 0.00 34.74 2.24
36 37 5.220529 GGTGTATTTACGCGAGCAAAATAGT 60.221 40.000 15.93 0.00 37.57 2.12
51 52 7.148188 ACGACGAGACATCTTAAGGTGTATTTA 60.148 37.037 21.21 0.00 0.00 1.40
131 132 1.045407 ACTCGCTTGTGTTGGTCCTA 58.955 50.000 0.00 0.00 0.00 2.94
138 152 3.402628 ACCAGATAACTCGCTTGTGTT 57.597 42.857 0.00 0.00 34.06 3.32
141 155 4.737855 ATGTACCAGATAACTCGCTTGT 57.262 40.909 0.00 0.00 0.00 3.16
146 160 4.188462 TGCCAAATGTACCAGATAACTCG 58.812 43.478 0.00 0.00 0.00 4.18
150 164 4.704540 CAGGTTGCCAAATGTACCAGATAA 59.295 41.667 0.00 0.00 33.02 1.75
192 206 6.469410 ACATCAAATTTACTGTAACTCGGGA 58.531 36.000 0.00 0.00 0.00 5.14
193 207 6.737254 ACATCAAATTTACTGTAACTCGGG 57.263 37.500 0.00 0.00 0.00 5.14
202 216 6.212955 ACCGTCCAAAACATCAAATTTACTG 58.787 36.000 0.00 0.00 0.00 2.74
203 217 6.399639 ACCGTCCAAAACATCAAATTTACT 57.600 33.333 0.00 0.00 0.00 2.24
283 1203 5.073428 TGTGTGTTGTTTAATAGGCCATCA 58.927 37.500 5.01 0.00 0.00 3.07
311 1231 9.696917 AAAGTAAAAAGTGGCAAATCTATTGAG 57.303 29.630 0.00 0.00 0.00 3.02
354 1279 6.967199 ACATGAAAAACGAGAAAGAAGAACAC 59.033 34.615 0.00 0.00 0.00 3.32
356 1435 7.097409 CGAACATGAAAAACGAGAAAGAAGAAC 60.097 37.037 0.00 0.00 0.00 3.01
364 1443 4.612712 GCCATCGAACATGAAAAACGAGAA 60.613 41.667 0.00 0.00 36.49 2.87
365 1444 3.120338 GCCATCGAACATGAAAAACGAGA 60.120 43.478 0.00 0.00 36.49 4.04
367 1446 2.550180 TGCCATCGAACATGAAAAACGA 59.450 40.909 0.00 3.44 37.39 3.85
374 1453 0.390998 TTCGCTGCCATCGAACATGA 60.391 50.000 0.00 0.00 40.49 3.07
395 1474 0.105709 TGTCATCCCTATGGCCTCGA 60.106 55.000 3.32 0.00 36.87 4.04
396 1475 0.758734 TTGTCATCCCTATGGCCTCG 59.241 55.000 3.32 0.00 36.87 4.63
397 1476 1.771255 ACTTGTCATCCCTATGGCCTC 59.229 52.381 3.32 0.00 36.87 4.70
398 1477 1.771255 GACTTGTCATCCCTATGGCCT 59.229 52.381 3.32 0.00 36.87 5.19
399 1478 1.541233 CGACTTGTCATCCCTATGGCC 60.541 57.143 0.00 0.00 36.87 5.36
401 1480 2.695666 AGTCGACTTGTCATCCCTATGG 59.304 50.000 13.58 0.00 33.61 2.74
402 1481 4.392921 AAGTCGACTTGTCATCCCTATG 57.607 45.455 29.24 0.00 34.38 2.23
403 1482 4.585162 CCTAAGTCGACTTGTCATCCCTAT 59.415 45.833 35.24 11.66 37.40 2.57
404 1483 3.952323 CCTAAGTCGACTTGTCATCCCTA 59.048 47.826 35.24 14.94 37.40 3.53
405 1484 2.761208 CCTAAGTCGACTTGTCATCCCT 59.239 50.000 35.24 12.88 37.40 4.20
406 1485 2.159085 CCCTAAGTCGACTTGTCATCCC 60.159 54.545 35.24 0.00 37.40 3.85
408 1487 3.870633 ACCCTAAGTCGACTTGTCATC 57.129 47.619 35.24 0.00 37.40 2.92
409 1488 3.130693 GCTACCCTAAGTCGACTTGTCAT 59.869 47.826 35.24 21.81 37.40 3.06
410 1489 2.490903 GCTACCCTAAGTCGACTTGTCA 59.509 50.000 35.24 18.37 37.40 3.58
411 1490 2.159268 GGCTACCCTAAGTCGACTTGTC 60.159 54.545 35.24 18.52 37.40 3.18
412 1491 1.823610 GGCTACCCTAAGTCGACTTGT 59.176 52.381 35.24 26.91 37.40 3.16
413 1492 1.822990 TGGCTACCCTAAGTCGACTTG 59.177 52.381 35.24 24.75 37.40 3.16
414 1493 2.226962 TGGCTACCCTAAGTCGACTT 57.773 50.000 31.70 31.70 39.85 3.01
415 1494 2.226962 TTGGCTACCCTAAGTCGACT 57.773 50.000 13.58 13.58 0.00 4.18
416 1495 3.552478 GCTATTGGCTACCCTAAGTCGAC 60.552 52.174 7.70 7.70 38.06 4.20
428 1509 0.534877 CATGCGGTGGCTATTGGCTA 60.535 55.000 1.98 0.00 41.46 3.93
430 1511 2.063541 GACATGCGGTGGCTATTGGC 62.064 60.000 0.00 0.00 40.82 4.52
432 1513 0.464373 AGGACATGCGGTGGCTATTG 60.464 55.000 0.00 0.00 40.82 1.90
433 1514 0.464373 CAGGACATGCGGTGGCTATT 60.464 55.000 0.00 0.00 40.82 1.73
440 1521 4.082523 CCCGTCAGGACATGCGGT 62.083 66.667 17.33 0.00 43.05 5.68
443 1524 0.321653 AAAGACCCGTCAGGACATGC 60.322 55.000 0.00 0.00 41.02 4.06
445 1526 1.550976 GAGAAAGACCCGTCAGGACAT 59.449 52.381 0.00 0.00 41.02 3.06
456 1537 2.610727 CCTCACAAGTCCGAGAAAGACC 60.611 54.545 0.00 0.00 34.67 3.85
459 1540 2.821991 ACCTCACAAGTCCGAGAAAG 57.178 50.000 0.00 0.00 0.00 2.62
460 1541 3.202906 CAAACCTCACAAGTCCGAGAAA 58.797 45.455 0.00 0.00 0.00 2.52
461 1542 2.484770 CCAAACCTCACAAGTCCGAGAA 60.485 50.000 0.00 0.00 0.00 2.87
463 1544 1.512926 CCAAACCTCACAAGTCCGAG 58.487 55.000 0.00 0.00 0.00 4.63
466 1547 0.185175 ACCCCAAACCTCACAAGTCC 59.815 55.000 0.00 0.00 0.00 3.85
467 1548 1.605753 GACCCCAAACCTCACAAGTC 58.394 55.000 0.00 0.00 0.00 3.01
469 1550 0.478507 AGGACCCCAAACCTCACAAG 59.521 55.000 0.00 0.00 0.00 3.16
471 1552 4.430388 AGGACCCCAAACCTCACA 57.570 55.556 0.00 0.00 0.00 3.58
475 1556 1.786441 TCATTTGAGGACCCCAAACCT 59.214 47.619 2.90 0.00 36.48 3.50
531 1613 0.033011 TAGGTGACCAGAGGAGCCTC 60.033 60.000 3.63 8.50 43.03 4.70
538 1620 1.478510 ACGCAAGATAGGTGACCAGAG 59.521 52.381 3.63 0.00 43.62 3.35
540 1622 3.068165 TGATACGCAAGATAGGTGACCAG 59.932 47.826 3.63 0.00 43.62 4.00
575 1657 2.125832 ACATTCGCCGTGTACCCG 60.126 61.111 0.00 0.00 0.00 5.28
578 1660 1.444895 ACCGACATTCGCCGTGTAC 60.445 57.895 0.00 0.00 38.82 2.90
581 1663 4.147322 GCACCGACATTCGCCGTG 62.147 66.667 0.00 1.92 38.82 4.94
582 1664 4.673298 TGCACCGACATTCGCCGT 62.673 61.111 0.00 0.00 38.82 5.68
583 1665 2.960512 TTTGCACCGACATTCGCCG 61.961 57.895 0.00 0.00 38.82 6.46
584 1666 1.442017 GTTTGCACCGACATTCGCC 60.442 57.895 0.00 0.00 38.82 5.54
586 1668 1.394697 GTTGTTTGCACCGACATTCG 58.605 50.000 0.00 0.00 40.07 3.34
587 1669 1.336755 AGGTTGTTTGCACCGACATTC 59.663 47.619 5.53 0.55 0.00 2.67
590 1672 1.433053 CGAGGTTGTTTGCACCGACA 61.433 55.000 5.53 0.00 0.00 4.35
591 1673 1.278637 CGAGGTTGTTTGCACCGAC 59.721 57.895 0.00 0.00 0.00 4.79
592 1674 1.890041 CCGAGGTTGTTTGCACCGA 60.890 57.895 0.00 0.00 0.00 4.69
593 1675 1.234615 ATCCGAGGTTGTTTGCACCG 61.235 55.000 0.00 0.00 0.00 4.94
608 1857 3.006859 TGAGAATAGTATGGGTGCATCCG 59.993 47.826 12.39 0.00 37.00 4.18
618 1867 6.017523 TCACTCTCGCTCTTGAGAATAGTATG 60.018 42.308 1.30 0.28 44.03 2.39
619 1868 6.058833 TCACTCTCGCTCTTGAGAATAGTAT 58.941 40.000 1.30 0.00 44.03 2.12
620 1869 5.429130 TCACTCTCGCTCTTGAGAATAGTA 58.571 41.667 1.30 0.00 44.03 1.82
625 1874 2.784347 TCTCACTCTCGCTCTTGAGAA 58.216 47.619 1.30 0.00 44.03 2.87
626 1875 2.481289 TCTCACTCTCGCTCTTGAGA 57.519 50.000 1.30 0.00 41.71 3.27
636 1885 3.300388 TGGTCCCACATATCTCACTCTC 58.700 50.000 0.00 0.00 0.00 3.20
637 1886 3.404869 TGGTCCCACATATCTCACTCT 57.595 47.619 0.00 0.00 0.00 3.24
675 1924 2.147958 GAGGTGCATGTTCGTTTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
676 1925 0.951558 GAGGTGCATGTTCGTTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
677 1926 0.240945 GGAGGTGCATGTTCGTTTGG 59.759 55.000 0.00 0.00 0.00 3.28
679 1928 0.534203 ACGGAGGTGCATGTTCGTTT 60.534 50.000 0.00 0.00 0.00 3.60
680 1929 0.949105 GACGGAGGTGCATGTTCGTT 60.949 55.000 6.10 0.00 0.00 3.85
688 1938 2.034532 TCTACGGACGGAGGTGCA 59.965 61.111 3.85 0.00 33.50 4.57
709 1960 0.171903 ATGGGACCGAGTACGTTTCG 59.828 55.000 13.31 13.31 37.88 3.46
710 1961 3.442100 CTTATGGGACCGAGTACGTTTC 58.558 50.000 0.00 0.00 37.88 2.78
711 1962 2.417787 GCTTATGGGACCGAGTACGTTT 60.418 50.000 0.00 0.00 37.88 3.60
722 1973 4.445699 CCAGCTCGCTTATGGGAC 57.554 61.111 0.00 0.00 0.00 4.46
728 1979 1.676678 CTACAGGCCCAGCTCGCTTA 61.677 60.000 0.00 0.00 0.00 3.09
815 2079 2.050351 CCGTTGTCTCACGCGTCT 60.050 61.111 9.86 0.00 38.93 4.18
855 2119 3.771160 CTCGGAGTCGGGGTTGGG 61.771 72.222 0.00 0.00 36.95 4.12
994 2277 1.453379 GGAGACGACGAGATGGGGA 60.453 63.158 0.00 0.00 0.00 4.81
1027 2310 2.107953 GGCGTCTCCATCTCTGGC 59.892 66.667 0.00 0.00 42.80 4.85
1032 2315 3.069980 GACAGCGGCGTCTCCATCT 62.070 63.158 9.37 0.00 32.92 2.90
1104 2387 1.594862 GGAATTGCGGTCGATCAAGAG 59.405 52.381 0.00 0.00 0.00 2.85
1105 2388 1.651987 GGAATTGCGGTCGATCAAGA 58.348 50.000 0.00 0.00 0.00 3.02
1108 2396 0.179084 GAGGGAATTGCGGTCGATCA 60.179 55.000 0.00 0.00 0.00 2.92
1127 2415 4.292178 GCGATCTGGGAGGGAGCG 62.292 72.222 0.00 0.00 43.99 5.03
1137 2425 0.174389 CGGGATCCATAGGCGATCTG 59.826 60.000 15.23 0.00 37.02 2.90
1145 2433 3.082548 AGTATCACGACGGGATCCATAG 58.917 50.000 17.45 6.83 0.00 2.23
1153 2441 2.033065 CGAGTAGAAGTATCACGACGGG 60.033 54.545 0.00 0.00 0.00 5.28
1165 2453 3.195825 ACACAGGGATTTCCGAGTAGAAG 59.804 47.826 0.00 0.00 41.52 2.85
1182 2470 1.003545 CAAGAACTGCGGTCAACACAG 60.004 52.381 0.00 0.00 37.45 3.66
1184 2472 0.307760 CCAAGAACTGCGGTCAACAC 59.692 55.000 0.00 0.00 0.00 3.32
1187 2475 2.151202 GAATCCAAGAACTGCGGTCAA 58.849 47.619 0.00 0.00 0.00 3.18
1687 3123 3.370315 CCTGCAGCTTAGGAATCAGTTCT 60.370 47.826 8.66 0.00 37.52 3.01
1773 3209 9.114965 CACGGAGATAATAACTAAACATACGAG 57.885 37.037 0.00 0.00 0.00 4.18
1776 3212 8.583810 TGCACGGAGATAATAACTAAACATAC 57.416 34.615 0.00 0.00 0.00 2.39
1786 3222 5.483811 TGAGTTGTTGCACGGAGATAATAA 58.516 37.500 0.00 0.00 0.00 1.40
1787 3223 5.079689 TGAGTTGTTGCACGGAGATAATA 57.920 39.130 0.00 0.00 0.00 0.98
1788 3224 3.937814 TGAGTTGTTGCACGGAGATAAT 58.062 40.909 0.00 0.00 0.00 1.28
1829 3265 9.399797 AGCTCAACAAATGATGATCAATAAGTA 57.600 29.630 0.00 0.00 37.44 2.24
1830 3266 8.188799 CAGCTCAACAAATGATGATCAATAAGT 58.811 33.333 0.00 0.00 37.44 2.24
1831 3267 7.167635 GCAGCTCAACAAATGATGATCAATAAG 59.832 37.037 0.00 0.00 37.44 1.73
1832 3268 6.976349 GCAGCTCAACAAATGATGATCAATAA 59.024 34.615 0.00 0.00 37.44 1.40
1892 3328 0.112995 AGGGATCAGGCTGTGCAAAA 59.887 50.000 15.27 0.00 0.00 2.44
1899 3354 1.915141 AAACACAAGGGATCAGGCTG 58.085 50.000 8.58 8.58 0.00 4.85
1941 3407 1.522668 TCGTTGGGCATCTTTCACAG 58.477 50.000 0.00 0.00 0.00 3.66
1943 3409 2.614057 CCTATCGTTGGGCATCTTTCAC 59.386 50.000 0.00 0.00 0.00 3.18
1944 3410 2.917933 CCTATCGTTGGGCATCTTTCA 58.082 47.619 0.00 0.00 0.00 2.69
2000 3468 7.544566 CAGCAAGAGTCTGCATCAAAATTTATT 59.455 33.333 14.37 0.00 45.18 1.40
2065 3533 5.525378 AGAAATTAGAGGCATCGACATTCAC 59.475 40.000 10.81 2.96 0.00 3.18
2096 4273 1.534729 CCCAGGTGTAACAAAGAGCC 58.465 55.000 0.00 0.00 39.98 4.70
2100 4277 2.554032 CTCAAGCCCAGGTGTAACAAAG 59.446 50.000 0.00 0.00 39.98 2.77
2107 4285 2.433446 CAGCTCAAGCCCAGGTGT 59.567 61.111 0.00 0.00 43.38 4.16
2110 4288 4.711949 ACGCAGCTCAAGCCCAGG 62.712 66.667 0.00 0.00 43.38 4.45
2131 4309 2.479837 CCTGAAACGACAACAGCAGTA 58.520 47.619 0.00 0.00 0.00 2.74
2141 4319 0.109597 CAGCAATGGCCTGAAACGAC 60.110 55.000 3.32 0.00 42.56 4.34
2143 4321 0.813184 ATCAGCAATGGCCTGAAACG 59.187 50.000 3.32 0.00 42.56 3.60
2146 4324 0.396139 GGGATCAGCAATGGCCTGAA 60.396 55.000 3.32 0.00 42.56 3.02
2147 4325 1.228228 GGGATCAGCAATGGCCTGA 59.772 57.895 3.32 0.00 42.56 3.86
2231 4409 0.320374 TCACGTGGAATGTCAGGGAC 59.680 55.000 17.00 0.00 30.19 4.46
2297 4475 2.435805 GGAGCTGACATTGACCTGGATA 59.564 50.000 0.00 0.00 0.00 2.59
2330 4514 2.959707 GTCAACACCGATATCCTCCTCT 59.040 50.000 0.00 0.00 0.00 3.69
2365 4549 5.357314 TCCTCGGTATTGTACTCTTCTTCAG 59.643 44.000 0.00 0.00 0.00 3.02
2366 4550 5.258841 TCCTCGGTATTGTACTCTTCTTCA 58.741 41.667 0.00 0.00 0.00 3.02
2390 4574 0.626916 AGTACTCTCCTTCCGGCTCT 59.373 55.000 0.00 0.00 0.00 4.09
2552 4736 0.386352 CGCTGTTGTAGACGAACCGA 60.386 55.000 0.00 0.00 0.00 4.69
2681 4865 1.002251 GCTTACTCCTCCTCGTCATCG 60.002 57.143 0.00 0.00 38.55 3.84
2837 5028 6.321717 CAGCAATAACGAATCAAAGCCTAAA 58.678 36.000 0.00 0.00 0.00 1.85
2838 5029 5.163663 CCAGCAATAACGAATCAAAGCCTAA 60.164 40.000 0.00 0.00 0.00 2.69
2839 5030 4.335315 CCAGCAATAACGAATCAAAGCCTA 59.665 41.667 0.00 0.00 0.00 3.93
2840 5031 3.129287 CCAGCAATAACGAATCAAAGCCT 59.871 43.478 0.00 0.00 0.00 4.58
2871 5062 2.567169 TGTACCACCATGTCCTCAGAAG 59.433 50.000 0.00 0.00 0.00 2.85
2884 5085 5.450412 CCAGCAATAACATCAATGTACCACC 60.450 44.000 0.00 0.00 40.80 4.61
2885 5086 5.125417 ACCAGCAATAACATCAATGTACCAC 59.875 40.000 0.00 0.00 40.80 4.16
2886 5087 5.260424 ACCAGCAATAACATCAATGTACCA 58.740 37.500 0.00 0.00 40.80 3.25
2887 5088 5.835113 ACCAGCAATAACATCAATGTACC 57.165 39.130 0.00 0.00 40.80 3.34
2888 5089 6.851609 TGAACCAGCAATAACATCAATGTAC 58.148 36.000 0.00 0.00 40.80 2.90
2889 5090 6.658816 ACTGAACCAGCAATAACATCAATGTA 59.341 34.615 0.00 0.00 35.91 2.29
2890 5091 5.477984 ACTGAACCAGCAATAACATCAATGT 59.522 36.000 0.00 0.00 37.55 2.71
2891 5092 5.957798 ACTGAACCAGCAATAACATCAATG 58.042 37.500 0.00 0.00 34.37 2.82
2892 5093 6.594788 AACTGAACCAGCAATAACATCAAT 57.405 33.333 0.00 0.00 34.37 2.57
2893 5094 6.714810 ACTAACTGAACCAGCAATAACATCAA 59.285 34.615 0.00 0.00 34.37 2.57
2894 5095 6.149308 CACTAACTGAACCAGCAATAACATCA 59.851 38.462 0.00 0.00 34.37 3.07
2933 5134 9.372369 GAGAGCATTGAGTTATTTAGTACAACT 57.628 33.333 0.00 0.00 35.27 3.16
3024 5256 4.965814 ACAGAGAATGAGCAAGAACTGAA 58.034 39.130 0.00 0.00 0.00 3.02
3025 5257 4.613925 ACAGAGAATGAGCAAGAACTGA 57.386 40.909 0.00 0.00 0.00 3.41
3026 5258 6.592994 TGAATACAGAGAATGAGCAAGAACTG 59.407 38.462 0.00 0.00 0.00 3.16
3027 5259 6.705302 TGAATACAGAGAATGAGCAAGAACT 58.295 36.000 0.00 0.00 0.00 3.01
3028 5260 6.593382 ACTGAATACAGAGAATGAGCAAGAAC 59.407 38.462 0.00 0.00 46.03 3.01
3029 5261 6.705302 ACTGAATACAGAGAATGAGCAAGAA 58.295 36.000 0.00 0.00 46.03 2.52
3030 5262 6.291648 ACTGAATACAGAGAATGAGCAAGA 57.708 37.500 0.00 0.00 46.03 3.02
3031 5263 6.981762 AACTGAATACAGAGAATGAGCAAG 57.018 37.500 0.00 0.00 46.03 4.01
3032 5264 7.445096 TGAAAACTGAATACAGAGAATGAGCAA 59.555 33.333 0.00 0.00 46.03 3.91
3033 5265 6.936335 TGAAAACTGAATACAGAGAATGAGCA 59.064 34.615 0.00 0.00 46.03 4.26
3034 5266 7.118971 ACTGAAAACTGAATACAGAGAATGAGC 59.881 37.037 0.00 0.00 46.03 4.26
3035 5267 8.545229 ACTGAAAACTGAATACAGAGAATGAG 57.455 34.615 0.00 0.00 46.03 2.90
3036 5268 8.908786 AACTGAAAACTGAATACAGAGAATGA 57.091 30.769 0.00 0.00 46.03 2.57
3144 5379 8.690203 TTTTCAGTGTCCTCAATAGAATTTGA 57.310 30.769 0.00 0.00 34.55 2.69
3145 5380 9.350357 CATTTTCAGTGTCCTCAATAGAATTTG 57.650 33.333 0.00 0.00 0.00 2.32
3147 5382 7.177216 TGCATTTTCAGTGTCCTCAATAGAATT 59.823 33.333 0.00 0.00 0.00 2.17
3148 5383 6.660521 TGCATTTTCAGTGTCCTCAATAGAAT 59.339 34.615 0.00 0.00 0.00 2.40
3149 5384 6.003326 TGCATTTTCAGTGTCCTCAATAGAA 58.997 36.000 0.00 0.00 0.00 2.10
3152 5387 5.534278 TGTTGCATTTTCAGTGTCCTCAATA 59.466 36.000 0.00 0.00 0.00 1.90
3188 5426 2.092429 AGAAAAGCCCCGAATGAGCATA 60.092 45.455 0.00 0.00 0.00 3.14
3198 5436 1.165270 CAGTAACCAGAAAAGCCCCG 58.835 55.000 0.00 0.00 0.00 5.73
3199 5437 2.287977 ACAGTAACCAGAAAAGCCCC 57.712 50.000 0.00 0.00 0.00 5.80
3201 5439 3.634910 TCCAAACAGTAACCAGAAAAGCC 59.365 43.478 0.00 0.00 0.00 4.35
3209 5447 5.068460 CAGTCCATTTTCCAAACAGTAACCA 59.932 40.000 0.00 0.00 0.00 3.67
3270 5518 6.169800 TGTCATGTCCTCATTTTGTATTCGA 58.830 36.000 0.00 0.00 31.15 3.71
3281 5529 6.094603 GCTTCTTGTATTTGTCATGTCCTCAT 59.905 38.462 0.00 0.00 34.21 2.90
3284 5532 5.182001 GTGCTTCTTGTATTTGTCATGTCCT 59.818 40.000 0.00 0.00 0.00 3.85
3293 5541 5.009010 ACTTGGACTGTGCTTCTTGTATTTG 59.991 40.000 0.00 0.00 0.00 2.32
3333 5623 5.777732 TCTTTACCAATAAATTGTGGGTGCT 59.222 36.000 0.00 0.00 39.39 4.40
3334 5624 6.031751 TCTTTACCAATAAATTGTGGGTGC 57.968 37.500 0.00 0.00 39.39 5.01
3337 5627 6.611236 AGGGATCTTTACCAATAAATTGTGGG 59.389 38.462 7.72 0.00 39.39 4.61
3338 5628 7.660030 AGGGATCTTTACCAATAAATTGTGG 57.340 36.000 2.25 2.32 41.00 4.17
3346 5636 9.496710 TGTTACTTCTAGGGATCTTTACCAATA 57.503 33.333 0.00 0.00 0.00 1.90
3347 5637 8.388656 TGTTACTTCTAGGGATCTTTACCAAT 57.611 34.615 0.00 0.00 0.00 3.16
3349 5639 7.801893 TTGTTACTTCTAGGGATCTTTACCA 57.198 36.000 0.00 0.00 0.00 3.25
3378 5824 5.224888 GTGTAGTCCACAAACTCGATTGTA 58.775 41.667 4.17 0.00 41.44 2.41
3407 5853 1.153549 GCCTTCGACTCGCTCCAAT 60.154 57.895 0.00 0.00 0.00 3.16
3408 5854 2.261671 GCCTTCGACTCGCTCCAA 59.738 61.111 0.00 0.00 0.00 3.53
3427 5879 0.676736 GAGGGAGGATGATGACGACC 59.323 60.000 0.00 0.00 0.00 4.79
3440 5892 3.354948 TGGACACAATCATTGAGGGAG 57.645 47.619 3.79 0.00 0.00 4.30
3447 5899 4.222336 TGGGAAAGTTGGACACAATCATT 58.778 39.130 0.00 0.00 39.13 2.57
3448 5900 3.843422 TGGGAAAGTTGGACACAATCAT 58.157 40.909 0.00 0.00 39.13 2.45
3450 5902 3.573967 ACATGGGAAAGTTGGACACAATC 59.426 43.478 0.00 0.00 39.13 2.67
3454 5906 2.582052 TGACATGGGAAAGTTGGACAC 58.418 47.619 0.00 0.00 0.00 3.67
3455 5907 3.524095 ATGACATGGGAAAGTTGGACA 57.476 42.857 0.00 0.00 0.00 4.02
3456 5908 3.826157 TGAATGACATGGGAAAGTTGGAC 59.174 43.478 0.00 0.00 0.00 4.02
3457 5909 4.111255 TGAATGACATGGGAAAGTTGGA 57.889 40.909 0.00 0.00 0.00 3.53
3458 5910 5.047164 TGAATGAATGACATGGGAAAGTTGG 60.047 40.000 0.00 0.00 39.39 3.77
3460 5912 6.669125 TTGAATGAATGACATGGGAAAGTT 57.331 33.333 0.00 0.00 39.39 2.66
3461 5913 6.669125 TTTGAATGAATGACATGGGAAAGT 57.331 33.333 0.00 0.00 39.39 2.66
3462 5914 7.324935 TGATTTGAATGAATGACATGGGAAAG 58.675 34.615 0.00 0.00 39.39 2.62
3463 5915 7.242322 TGATTTGAATGAATGACATGGGAAA 57.758 32.000 0.00 0.00 39.39 3.13
3464 5916 6.854091 TGATTTGAATGAATGACATGGGAA 57.146 33.333 0.00 0.00 39.39 3.97
3465 5917 6.438108 AGTTGATTTGAATGAATGACATGGGA 59.562 34.615 0.00 0.00 39.39 4.37
3500 6019 8.581578 GTTCAATATTTGGGGAAGACAAGTAAA 58.418 33.333 0.00 0.00 0.00 2.01
3501 6020 7.177744 GGTTCAATATTTGGGGAAGACAAGTAA 59.822 37.037 0.00 0.00 0.00 2.24
3502 6021 6.661805 GGTTCAATATTTGGGGAAGACAAGTA 59.338 38.462 0.00 0.00 0.00 2.24
3505 6024 5.245075 GTGGTTCAATATTTGGGGAAGACAA 59.755 40.000 0.00 0.00 0.00 3.18
3507 6026 5.016831 AGTGGTTCAATATTTGGGGAAGAC 58.983 41.667 0.00 0.00 0.00 3.01
3508 6027 5.269554 AGTGGTTCAATATTTGGGGAAGA 57.730 39.130 0.00 0.00 0.00 2.87
3510 6029 6.395780 TCTAGTGGTTCAATATTTGGGGAA 57.604 37.500 0.00 0.00 0.00 3.97
3511 6030 6.395780 TTCTAGTGGTTCAATATTTGGGGA 57.604 37.500 0.00 0.00 0.00 4.81
3512 6031 8.796475 CATATTCTAGTGGTTCAATATTTGGGG 58.204 37.037 0.00 0.00 0.00 4.96
3513 6032 9.354673 ACATATTCTAGTGGTTCAATATTTGGG 57.645 33.333 0.00 0.00 0.00 4.12
3543 6154 0.955428 GTCCATGCCTTGCAACGAGA 60.955 55.000 0.00 0.00 43.62 4.04
3545 6156 0.821301 TTGTCCATGCCTTGCAACGA 60.821 50.000 0.00 0.00 43.62 3.85
3554 6165 2.802816 CGACTAGCTAATTGTCCATGCC 59.197 50.000 6.14 0.00 30.81 4.40
3558 6169 4.021807 TGTCAACGACTAGCTAATTGTCCA 60.022 41.667 0.00 0.00 33.15 4.02
3583 6194 0.242825 TAAGCACGTCGACTTCCTGG 59.757 55.000 14.70 0.00 0.00 4.45
3585 6196 1.199558 GTCTAAGCACGTCGACTTCCT 59.800 52.381 14.70 0.00 0.00 3.36
3592 6203 0.320073 TTTGGGGTCTAAGCACGTCG 60.320 55.000 0.00 0.00 0.00 5.12
3594 6205 1.053424 TCTTTGGGGTCTAAGCACGT 58.947 50.000 0.00 0.00 0.00 4.49
3608 6219 5.261209 TGTTGTGGAGAATTGGTTCTTTG 57.739 39.130 0.00 0.00 44.57 2.77
3613 6224 5.413309 TTTGTTGTTGTGGAGAATTGGTT 57.587 34.783 0.00 0.00 0.00 3.67
3620 6231 5.760743 TCAACGATATTTGTTGTTGTGGAGA 59.239 36.000 16.65 0.00 45.33 3.71
3622 6233 6.205658 TCATCAACGATATTTGTTGTTGTGGA 59.794 34.615 20.61 11.73 45.33 4.02
3626 6237 8.726650 TTCTTCATCAACGATATTTGTTGTTG 57.273 30.769 17.94 17.94 45.33 3.33
3628 6239 9.743057 TTTTTCTTCATCAACGATATTTGTTGT 57.257 25.926 16.65 6.44 45.33 3.32
3657 6269 8.398665 GTTTGTAGGTATGGTCATTTTGATCTC 58.601 37.037 0.00 0.00 0.00 2.75
3690 6302 0.179006 GGATTTGGCTAGGGCTCCTG 60.179 60.000 4.16 0.00 38.73 3.86
3692 6304 0.480252 ATGGATTTGGCTAGGGCTCC 59.520 55.000 0.00 0.00 38.73 4.70
3713 6325 2.364324 GCTTGGGTCTACATCGTATCCA 59.636 50.000 0.00 0.00 0.00 3.41
3715 6327 3.728076 TGCTTGGGTCTACATCGTATC 57.272 47.619 0.00 0.00 0.00 2.24
3718 6330 2.851263 TTTGCTTGGGTCTACATCGT 57.149 45.000 0.00 0.00 0.00 3.73
3720 6332 2.614057 CGGATTTGCTTGGGTCTACATC 59.386 50.000 0.00 0.00 0.00 3.06
3721 6333 2.643551 CGGATTTGCTTGGGTCTACAT 58.356 47.619 0.00 0.00 0.00 2.29
3755 6382 3.628646 GAGCGGGAGGGTGCATGTT 62.629 63.158 0.00 0.00 0.00 2.71
3756 6383 4.101448 GAGCGGGAGGGTGCATGT 62.101 66.667 0.00 0.00 0.00 3.21
3772 6399 3.793775 TTTTGTGCTCCGGTCGCGA 62.794 57.895 3.71 3.71 0.00 5.87
3773 6400 2.677003 ATTTTGTGCTCCGGTCGCG 61.677 57.895 0.00 0.00 0.00 5.87
3774 6401 1.154225 CATTTTGTGCTCCGGTCGC 60.154 57.895 0.00 6.43 0.00 5.19
3775 6402 1.501741 CCATTTTGTGCTCCGGTCG 59.498 57.895 0.00 0.00 0.00 4.79
3776 6403 1.212751 GCCATTTTGTGCTCCGGTC 59.787 57.895 0.00 0.00 0.00 4.79
3817 6455 2.589540 CAAGGTGGCGGCATCCTA 59.410 61.111 25.51 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.