Multiple sequence alignment - TraesCS1B01G201200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G201200 chr1B 100.000 2297 0 0 1 2297 360365522 360363226 0.000000e+00 4242.0
1 TraesCS1B01G201200 chr1B 79.853 273 30 13 1648 1900 604751139 604751406 2.350000e-40 176.0
2 TraesCS1B01G201200 chr1D 91.843 1042 58 12 553 1585 252595665 252596688 0.000000e+00 1428.0
3 TraesCS1B01G201200 chr1D 91.929 508 26 4 69 562 252572294 252572800 0.000000e+00 697.0
4 TraesCS1B01G201200 chr1D 82.284 429 47 16 1597 2005 35789194 35789613 6.080000e-91 344.0
5 TraesCS1B01G201200 chr1A 90.789 836 36 11 69 870 323960008 323960836 0.000000e+00 1079.0
6 TraesCS1B01G201200 chr1A 90.985 721 62 3 875 1595 323961117 323961834 0.000000e+00 968.0
7 TraesCS1B01G201200 chr1A 90.217 184 14 1 1600 1783 562031592 562031413 1.060000e-58 237.0
8 TraesCS1B01G201200 chr2D 82.432 370 42 11 1600 1950 628619120 628618755 3.710000e-78 302.0
9 TraesCS1B01G201200 chr7A 82.371 329 38 14 1598 1914 202098092 202098412 3.760000e-68 268.0
10 TraesCS1B01G201200 chr6A 80.371 377 41 14 1598 1956 549434012 549433651 2.930000e-64 255.0
11 TraesCS1B01G201200 chr3D 80.223 359 49 13 1661 2005 120524481 120524831 1.360000e-62 250.0
12 TraesCS1B01G201200 chr7D 78.660 403 51 19 1598 1983 545270723 545271107 3.820000e-58 235.0
13 TraesCS1B01G201200 chr7D 77.690 381 60 16 1598 1958 611009512 611009137 2.310000e-50 209.0
14 TraesCS1B01G201200 chr7D 83.505 97 16 0 1478 1574 242791457 242791361 8.740000e-15 91.6
15 TraesCS1B01G201200 chr4B 84.163 221 26 3 1625 1841 497501146 497501361 2.990000e-49 206.0
16 TraesCS1B01G201200 chr6D 77.534 365 56 17 1600 1947 433605451 433605096 1.800000e-46 196.0
17 TraesCS1B01G201200 chr7B 77.054 353 48 22 1626 1955 716703288 716703630 3.030000e-39 172.0
18 TraesCS1B01G201200 chr5A 85.161 155 21 1 1630 1784 643454250 643454402 8.500000e-35 158.0
19 TraesCS1B01G201200 chr4A 84.962 133 19 1 1443 1574 690411290 690411422 1.430000e-27 134.0
20 TraesCS1B01G201200 chr4A 87.654 81 10 0 1494 1574 514080879 514080959 6.760000e-16 95.3
21 TraesCS1B01G201200 chr6B 78.519 135 27 1 1442 1574 199930518 199930652 1.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G201200 chr1B 360363226 360365522 2296 True 4242.0 4242 100.000 1 2297 1 chr1B.!!$R1 2296
1 TraesCS1B01G201200 chr1D 252595665 252596688 1023 False 1428.0 1428 91.843 553 1585 1 chr1D.!!$F3 1032
2 TraesCS1B01G201200 chr1D 252572294 252572800 506 False 697.0 697 91.929 69 562 1 chr1D.!!$F2 493
3 TraesCS1B01G201200 chr1A 323960008 323961834 1826 False 1023.5 1079 90.887 69 1595 2 chr1A.!!$F1 1526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.03467 AGGAGCCATGAAGTCTTGCC 60.035 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 2285 0.249868 TTTGGTGACCGAGCTCACTG 60.25 55.0 15.4 3.86 40.5 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.404773 GGAACAGTGGGAGAGGGG 58.595 66.667 0.00 0.00 0.00 4.79
18 19 1.229529 GGAACAGTGGGAGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
19 20 1.268283 GGAACAGTGGGAGAGGGGAG 61.268 65.000 0.00 0.00 0.00 4.30
20 21 1.229658 AACAGTGGGAGAGGGGAGG 60.230 63.158 0.00 0.00 0.00 4.30
21 22 2.366167 CAGTGGGAGAGGGGAGGG 60.366 72.222 0.00 0.00 0.00 4.30
22 23 3.700350 AGTGGGAGAGGGGAGGGG 61.700 72.222 0.00 0.00 0.00 4.79
23 24 4.825679 GTGGGAGAGGGGAGGGGG 62.826 77.778 0.00 0.00 0.00 5.40
25 26 4.179599 GGGAGAGGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
26 27 4.179599 GGAGAGGGGAGGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
27 28 4.179599 GAGAGGGGAGGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
28 29 4.761304 AGAGGGGAGGGGGAGGGA 62.761 72.222 0.00 0.00 0.00 4.20
29 30 4.179599 GAGGGGAGGGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
32 33 4.179599 GGGAGGGGGAGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
33 34 3.369388 GGAGGGGGAGGGAGGAGT 61.369 72.222 0.00 0.00 0.00 3.85
34 35 2.041405 GAGGGGGAGGGAGGAGTG 60.041 72.222 0.00 0.00 0.00 3.51
35 36 3.700350 AGGGGGAGGGAGGAGTGG 61.700 72.222 0.00 0.00 0.00 4.00
36 37 3.695825 GGGGGAGGGAGGAGTGGA 61.696 72.222 0.00 0.00 0.00 4.02
37 38 2.041405 GGGGAGGGAGGAGTGGAG 60.041 72.222 0.00 0.00 0.00 3.86
38 39 2.637640 GGGGAGGGAGGAGTGGAGA 61.638 68.421 0.00 0.00 0.00 3.71
39 40 1.075600 GGGAGGGAGGAGTGGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
40 41 1.585651 GGGAGGGAGGAGTGGAGAGA 61.586 65.000 0.00 0.00 0.00 3.10
41 42 0.106217 GGAGGGAGGAGTGGAGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
42 43 0.106217 GAGGGAGGAGTGGAGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
43 44 0.553862 AGGGAGGAGTGGAGAGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
44 45 0.106217 GGGAGGAGTGGAGAGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
45 46 0.755327 GGAGGAGTGGAGAGAGGAGC 60.755 65.000 0.00 0.00 0.00 4.70
46 47 0.755327 GAGGAGTGGAGAGAGGAGCC 60.755 65.000 0.00 0.00 0.00 4.70
47 48 1.000993 GGAGTGGAGAGAGGAGCCA 59.999 63.158 0.00 0.00 0.00 4.75
48 49 0.398381 GGAGTGGAGAGAGGAGCCAT 60.398 60.000 0.00 0.00 33.66 4.40
49 50 0.752054 GAGTGGAGAGAGGAGCCATG 59.248 60.000 0.00 0.00 33.66 3.66
50 51 0.337773 AGTGGAGAGAGGAGCCATGA 59.662 55.000 0.00 0.00 33.66 3.07
51 52 1.198713 GTGGAGAGAGGAGCCATGAA 58.801 55.000 0.00 0.00 33.66 2.57
52 53 1.138661 GTGGAGAGAGGAGCCATGAAG 59.861 57.143 0.00 0.00 33.66 3.02
53 54 1.273495 TGGAGAGAGGAGCCATGAAGT 60.273 52.381 0.00 0.00 0.00 3.01
54 55 1.412343 GGAGAGAGGAGCCATGAAGTC 59.588 57.143 0.00 0.00 0.00 3.01
55 56 2.387757 GAGAGAGGAGCCATGAAGTCT 58.612 52.381 0.00 0.00 0.00 3.24
56 57 2.765699 GAGAGAGGAGCCATGAAGTCTT 59.234 50.000 0.00 0.00 0.00 3.01
57 58 2.500910 AGAGAGGAGCCATGAAGTCTTG 59.499 50.000 0.00 0.00 0.00 3.02
58 59 1.065564 AGAGGAGCCATGAAGTCTTGC 60.066 52.381 0.00 0.00 0.00 4.01
59 60 0.034670 AGGAGCCATGAAGTCTTGCC 60.035 55.000 0.00 0.00 0.00 4.52
60 61 1.034292 GGAGCCATGAAGTCTTGCCC 61.034 60.000 0.00 0.00 0.00 5.36
61 62 0.034670 GAGCCATGAAGTCTTGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
62 63 0.034670 AGCCATGAAGTCTTGCCCTC 60.035 55.000 0.00 0.00 0.00 4.30
63 64 0.034670 GCCATGAAGTCTTGCCCTCT 60.035 55.000 0.00 0.00 0.00 3.69
64 65 1.747709 CCATGAAGTCTTGCCCTCTG 58.252 55.000 0.00 0.00 0.00 3.35
65 66 1.004044 CCATGAAGTCTTGCCCTCTGT 59.996 52.381 0.00 0.00 0.00 3.41
66 67 2.082231 CATGAAGTCTTGCCCTCTGTG 58.918 52.381 0.00 0.00 0.00 3.66
67 68 1.131638 TGAAGTCTTGCCCTCTGTGT 58.868 50.000 0.00 0.00 0.00 3.72
72 73 0.836606 TCTTGCCCTCTGTGTCACAA 59.163 50.000 7.18 0.00 0.00 3.33
79 80 2.564771 CCTCTGTGTCACAAGCTTTGA 58.435 47.619 7.18 1.50 0.00 2.69
91 92 4.025480 CACAAGCTTTGATGTTTTGGAAGC 60.025 41.667 0.00 0.00 42.17 3.86
92 93 4.121317 CAAGCTTTGATGTTTTGGAAGCA 58.879 39.130 0.00 0.00 43.78 3.91
132 134 0.606401 CCACAGGTGACACCATGTCC 60.606 60.000 26.30 0.00 46.40 4.02
309 324 1.527034 ACTAGCAACGTCGGTCACTA 58.473 50.000 0.00 0.00 0.00 2.74
343 358 2.291457 GAAGGCCGAGCTCACTCCTC 62.291 65.000 15.40 6.97 40.03 3.71
543 564 2.573869 CACCACTCTCGCCATCGT 59.426 61.111 0.00 0.00 36.96 3.73
571 600 5.128827 CCCACCACTCTTAATTAGCAGTAGA 59.871 44.000 0.00 0.00 0.00 2.59
606 637 0.474184 CTCCCACTTCCCCGCATTAT 59.526 55.000 0.00 0.00 0.00 1.28
609 640 1.409521 CCCACTTCCCCGCATTATCAA 60.410 52.381 0.00 0.00 0.00 2.57
614 645 2.455674 TCCCCGCATTATCAAGATCG 57.544 50.000 0.00 0.00 0.00 3.69
628 659 2.305405 GATCGCCACAGATCTGCAC 58.695 57.895 22.83 11.01 42.68 4.57
629 660 0.179089 GATCGCCACAGATCTGCACT 60.179 55.000 22.83 0.00 42.68 4.40
630 661 0.251354 ATCGCCACAGATCTGCACTT 59.749 50.000 22.83 0.00 0.00 3.16
631 662 0.035317 TCGCCACAGATCTGCACTTT 59.965 50.000 22.83 0.00 0.00 2.66
632 663 0.167470 CGCCACAGATCTGCACTTTG 59.833 55.000 22.83 12.46 0.00 2.77
633 664 0.524862 GCCACAGATCTGCACTTTGG 59.475 55.000 22.83 21.18 38.00 3.28
634 665 1.883638 GCCACAGATCTGCACTTTGGA 60.884 52.381 25.77 0.00 37.38 3.53
635 666 1.808945 CCACAGATCTGCACTTTGGAC 59.191 52.381 22.83 0.00 37.38 4.02
649 680 5.733373 GCACTTTGGACTTTGGAGTTTACTG 60.733 44.000 0.00 0.00 35.88 2.74
684 715 5.336134 CCAATCTTCAATCAGCAATGTGACA 60.336 40.000 0.00 0.00 0.00 3.58
725 756 5.048083 TCCCTTTGATCCGTGAGAATTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
796 831 3.123804 TCTTTCTCGAAGTGTTGTCAGC 58.876 45.455 0.00 0.00 36.70 4.26
870 905 1.800805 CCATGTGCGCCCTCTAATAG 58.199 55.000 4.18 0.00 0.00 1.73
871 906 1.151668 CATGTGCGCCCTCTAATAGC 58.848 55.000 4.18 0.00 0.00 2.97
873 908 0.104855 TGTGCGCCCTCTAATAGCAG 59.895 55.000 4.18 0.00 38.59 4.24
878 1189 0.695347 GCCCTCTAATAGCAGGCCAT 59.305 55.000 5.01 0.00 37.66 4.40
909 1220 7.361971 CCCAAGATTTCCCAAATAAATGCAAAC 60.362 37.037 0.00 0.00 0.00 2.93
911 1222 7.019656 AGATTTCCCAAATAAATGCAAACCT 57.980 32.000 0.00 0.00 0.00 3.50
926 1237 0.991355 AACCTGTCAACCACCCCAGA 60.991 55.000 0.00 0.00 0.00 3.86
931 1242 2.965147 CTGTCAACCACCCCAGATTTTT 59.035 45.455 0.00 0.00 0.00 1.94
933 1244 3.892588 TGTCAACCACCCCAGATTTTTAC 59.107 43.478 0.00 0.00 0.00 2.01
934 1245 4.149598 GTCAACCACCCCAGATTTTTACT 58.850 43.478 0.00 0.00 0.00 2.24
935 1246 5.163077 TGTCAACCACCCCAGATTTTTACTA 60.163 40.000 0.00 0.00 0.00 1.82
936 1247 5.182570 GTCAACCACCCCAGATTTTTACTAC 59.817 44.000 0.00 0.00 0.00 2.73
941 1252 8.577164 ACCACCCCAGATTTTTACTACTATAT 57.423 34.615 0.00 0.00 0.00 0.86
959 1270 9.623350 CTACTATATGTTCAGATCATCACTGTG 57.377 37.037 0.17 0.17 36.81 3.66
969 1280 1.067071 TCATCACTGTGAGAGCAGCAG 60.067 52.381 16.46 0.00 39.96 4.24
1016 1327 3.008330 CCAAGATGAGGCTGTTCTTCAG 58.992 50.000 0.00 0.00 46.12 3.02
1203 1514 1.101635 CGGAGATGGGTAGAGTGCGA 61.102 60.000 0.00 0.00 0.00 5.10
1246 1557 2.094675 GACCATCACCAAATCACCAGG 58.905 52.381 0.00 0.00 0.00 4.45
1365 1676 3.660865 TCTCTTTACCAAGAACGCTTCC 58.339 45.455 0.00 0.00 38.63 3.46
1429 1740 8.268850 TGAGATTCATGCTTTACCTTTTCTAC 57.731 34.615 0.00 0.00 0.00 2.59
1452 1763 2.168496 TCTTCACAAGTACTCCCTCCG 58.832 52.381 0.00 0.00 0.00 4.63
1459 1770 4.081862 CACAAGTACTCCCTCCGTTCATTA 60.082 45.833 0.00 0.00 0.00 1.90
1460 1771 4.081807 ACAAGTACTCCCTCCGTTCATTAC 60.082 45.833 0.00 0.00 0.00 1.89
1464 1775 6.134754 AGTACTCCCTCCGTTCATTACTATT 58.865 40.000 0.00 0.00 0.00 1.73
1510 1821 6.927416 TGGGATATATGTAGACGCGTTTTAT 58.073 36.000 15.53 8.77 0.00 1.40
1521 1832 4.731480 AGACGCGTTTTATTGTGTTTGTTC 59.269 37.500 15.53 0.00 0.00 3.18
1535 1846 5.163663 TGTGTTTGTTCACTCATTTCTGTCC 60.164 40.000 0.00 0.00 38.90 4.02
1556 1867 9.995957 CTGTCCATATCTAGTCTATATTGAACG 57.004 37.037 0.00 0.00 0.00 3.95
1575 1886 7.052565 TGAACGATCCAAAACGTCTTATAAC 57.947 36.000 0.00 0.00 41.87 1.89
1591 1902 9.569167 CGTCTTATAACAGTGATAAGAGTGAAA 57.431 33.333 17.87 0.00 43.32 2.69
1596 1907 6.426646 AACAGTGATAAGAGTGAAAGGAGT 57.573 37.500 0.00 0.00 0.00 3.85
1597 1908 5.788450 ACAGTGATAAGAGTGAAAGGAGTG 58.212 41.667 0.00 0.00 0.00 3.51
1598 1909 5.540337 ACAGTGATAAGAGTGAAAGGAGTGA 59.460 40.000 0.00 0.00 0.00 3.41
1599 1910 6.042093 ACAGTGATAAGAGTGAAAGGAGTGAA 59.958 38.462 0.00 0.00 0.00 3.18
1600 1911 6.931281 CAGTGATAAGAGTGAAAGGAGTGAAA 59.069 38.462 0.00 0.00 0.00 2.69
1601 1912 7.442364 CAGTGATAAGAGTGAAAGGAGTGAAAA 59.558 37.037 0.00 0.00 0.00 2.29
1602 1913 8.160106 AGTGATAAGAGTGAAAGGAGTGAAAAT 58.840 33.333 0.00 0.00 0.00 1.82
1603 1914 8.787852 GTGATAAGAGTGAAAGGAGTGAAAATT 58.212 33.333 0.00 0.00 0.00 1.82
1604 1915 8.786898 TGATAAGAGTGAAAGGAGTGAAAATTG 58.213 33.333 0.00 0.00 0.00 2.32
1605 1916 5.444663 AGAGTGAAAGGAGTGAAAATTGC 57.555 39.130 0.00 0.00 0.00 3.56
1606 1917 5.136105 AGAGTGAAAGGAGTGAAAATTGCT 58.864 37.500 0.00 0.00 0.00 3.91
1607 1918 5.595952 AGAGTGAAAGGAGTGAAAATTGCTT 59.404 36.000 0.00 0.00 0.00 3.91
1608 1919 6.097412 AGAGTGAAAGGAGTGAAAATTGCTTT 59.903 34.615 0.00 0.00 37.62 3.51
1609 1920 6.643388 AGTGAAAGGAGTGAAAATTGCTTTT 58.357 32.000 0.00 0.00 35.50 2.27
1610 1921 6.536224 AGTGAAAGGAGTGAAAATTGCTTTTG 59.464 34.615 0.00 0.00 35.50 2.44
1611 1922 5.816777 TGAAAGGAGTGAAAATTGCTTTTGG 59.183 36.000 0.00 0.00 35.50 3.28
1612 1923 5.612725 AAGGAGTGAAAATTGCTTTTGGA 57.387 34.783 0.00 0.00 34.73 3.53
1613 1924 5.205759 AGGAGTGAAAATTGCTTTTGGAG 57.794 39.130 0.00 0.00 34.73 3.86
1622 1933 3.583383 CTTTTGGAGCTCGGCCTG 58.417 61.111 7.83 0.00 0.00 4.85
1623 1934 2.672996 TTTTGGAGCTCGGCCTGC 60.673 61.111 7.83 5.17 0.00 4.85
1624 1935 3.490031 TTTTGGAGCTCGGCCTGCA 62.490 57.895 17.81 0.00 0.00 4.41
1625 1936 2.769652 TTTTGGAGCTCGGCCTGCAT 62.770 55.000 17.81 5.17 33.07 3.96
1626 1937 3.982316 TTGGAGCTCGGCCTGCATG 62.982 63.158 17.81 0.00 33.07 4.06
1628 1939 4.166888 GAGCTCGGCCTGCATGGA 62.167 66.667 17.81 0.00 38.35 3.41
1629 1940 4.172512 AGCTCGGCCTGCATGGAG 62.173 66.667 17.81 7.35 38.35 3.86
1649 1960 5.151297 GAGGCCTCCAAATTCAAATTTCA 57.849 39.130 23.19 0.00 36.52 2.69
1650 1961 5.550290 GAGGCCTCCAAATTCAAATTTCAA 58.450 37.500 23.19 0.00 36.52 2.69
1651 1962 5.939447 AGGCCTCCAAATTCAAATTTCAAA 58.061 33.333 0.00 0.00 36.52 2.69
1652 1963 6.363882 AGGCCTCCAAATTCAAATTTCAAAA 58.636 32.000 0.00 0.00 36.52 2.44
1653 1964 7.005902 AGGCCTCCAAATTCAAATTTCAAAAT 58.994 30.769 0.00 0.00 36.52 1.82
1654 1965 7.506599 AGGCCTCCAAATTCAAATTTCAAAATT 59.493 29.630 0.00 0.00 40.15 1.82
1655 1966 7.809331 GGCCTCCAAATTCAAATTTCAAAATTC 59.191 33.333 0.00 0.00 37.62 2.17
1656 1967 8.351461 GCCTCCAAATTCAAATTTCAAAATTCA 58.649 29.630 1.43 0.00 37.62 2.57
1730 2041 2.512705 TGCATGAAGGCATAACACACA 58.487 42.857 0.00 0.00 39.25 3.72
1731 2042 3.090790 TGCATGAAGGCATAACACACAT 58.909 40.909 0.00 0.00 39.25 3.21
1732 2043 3.119424 TGCATGAAGGCATAACACACATG 60.119 43.478 0.00 0.00 39.25 3.21
1733 2044 3.119388 GCATGAAGGCATAACACACATGT 60.119 43.478 0.00 0.00 34.41 3.21
1734 2045 4.417506 CATGAAGGCATAACACACATGTG 58.582 43.478 24.25 24.25 41.42 3.21
1735 2046 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
1736 2047 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
1750 2061 5.581605 CACATGTGTGTATATTTTCAGGGC 58.418 41.667 18.03 0.00 40.96 5.19
1751 2062 5.125257 CACATGTGTGTATATTTTCAGGGCA 59.875 40.000 18.03 0.00 40.96 5.36
1752 2063 5.714333 ACATGTGTGTATATTTTCAGGGCAA 59.286 36.000 0.00 0.00 36.63 4.52
1753 2064 6.210385 ACATGTGTGTATATTTTCAGGGCAAA 59.790 34.615 0.00 0.00 36.63 3.68
1754 2065 6.656632 TGTGTGTATATTTTCAGGGCAAAA 57.343 33.333 0.00 0.00 0.00 2.44
1755 2066 7.238486 TGTGTGTATATTTTCAGGGCAAAAT 57.762 32.000 0.56 0.56 39.01 1.82
1756 2067 8.354711 TGTGTGTATATTTTCAGGGCAAAATA 57.645 30.769 4.36 4.36 40.71 1.40
1757 2068 8.465999 TGTGTGTATATTTTCAGGGCAAAATAG 58.534 33.333 7.15 0.00 40.11 1.73
1758 2069 7.920682 GTGTGTATATTTTCAGGGCAAAATAGG 59.079 37.037 7.15 0.00 40.11 2.57
1759 2070 7.617723 TGTGTATATTTTCAGGGCAAAATAGGT 59.382 33.333 7.15 0.00 40.11 3.08
1760 2071 8.474831 GTGTATATTTTCAGGGCAAAATAGGTT 58.525 33.333 7.15 0.00 40.11 3.50
1761 2072 8.474025 TGTATATTTTCAGGGCAAAATAGGTTG 58.526 33.333 7.15 0.00 40.11 3.77
1762 2073 7.732222 ATATTTTCAGGGCAAAATAGGTTGA 57.268 32.000 7.15 0.00 40.11 3.18
1763 2074 5.878406 TTTTCAGGGCAAAATAGGTTGAA 57.122 34.783 0.00 0.00 0.00 2.69
1764 2075 5.878406 TTTCAGGGCAAAATAGGTTGAAA 57.122 34.783 0.00 0.00 32.52 2.69
1765 2076 6.432403 TTTCAGGGCAAAATAGGTTGAAAT 57.568 33.333 0.00 0.00 30.67 2.17
1766 2077 5.404466 TCAGGGCAAAATAGGTTGAAATG 57.596 39.130 0.00 0.00 0.00 2.32
1767 2078 5.083122 TCAGGGCAAAATAGGTTGAAATGA 58.917 37.500 0.00 0.00 0.00 2.57
1768 2079 5.185635 TCAGGGCAAAATAGGTTGAAATGAG 59.814 40.000 0.00 0.00 0.00 2.90
1769 2080 4.467438 AGGGCAAAATAGGTTGAAATGAGG 59.533 41.667 0.00 0.00 0.00 3.86
1770 2081 4.383010 GGGCAAAATAGGTTGAAATGAGGG 60.383 45.833 0.00 0.00 0.00 4.30
1771 2082 4.222810 GGCAAAATAGGTTGAAATGAGGGT 59.777 41.667 0.00 0.00 0.00 4.34
1772 2083 5.279960 GGCAAAATAGGTTGAAATGAGGGTT 60.280 40.000 0.00 0.00 0.00 4.11
1773 2084 6.071051 GGCAAAATAGGTTGAAATGAGGGTTA 60.071 38.462 0.00 0.00 0.00 2.85
1774 2085 7.364673 GGCAAAATAGGTTGAAATGAGGGTTAT 60.365 37.037 0.00 0.00 0.00 1.89
1775 2086 7.492344 GCAAAATAGGTTGAAATGAGGGTTATG 59.508 37.037 0.00 0.00 0.00 1.90
1776 2087 6.715347 AATAGGTTGAAATGAGGGTTATGC 57.285 37.500 0.00 0.00 0.00 3.14
1777 2088 4.046286 AGGTTGAAATGAGGGTTATGCA 57.954 40.909 0.00 0.00 0.00 3.96
1778 2089 4.415596 AGGTTGAAATGAGGGTTATGCAA 58.584 39.130 0.00 0.00 0.00 4.08
1779 2090 4.837860 AGGTTGAAATGAGGGTTATGCAAA 59.162 37.500 0.00 0.00 0.00 3.68
1780 2091 5.306678 AGGTTGAAATGAGGGTTATGCAAAA 59.693 36.000 0.00 0.00 0.00 2.44
1781 2092 5.994668 GGTTGAAATGAGGGTTATGCAAAAA 59.005 36.000 0.00 0.00 0.00 1.94
1808 2119 8.650143 AGGGACTTTTTAACACATGATATTGT 57.350 30.769 0.00 0.00 27.25 2.71
1809 2120 9.088987 AGGGACTTTTTAACACATGATATTGTT 57.911 29.630 0.00 1.80 35.82 2.83
1810 2121 9.353999 GGGACTTTTTAACACATGATATTGTTC 57.646 33.333 0.00 0.00 37.19 3.18
1811 2122 9.906660 GGACTTTTTAACACATGATATTGTTCA 57.093 29.630 0.00 0.00 37.19 3.18
1817 2128 6.949352 AACACATGATATTGTTCATCCTCC 57.051 37.500 0.00 0.00 34.09 4.30
1818 2129 5.380043 ACACATGATATTGTTCATCCTCCC 58.620 41.667 0.00 0.00 34.09 4.30
1819 2130 5.103982 ACACATGATATTGTTCATCCTCCCA 60.104 40.000 0.00 0.00 34.09 4.37
1820 2131 6.008331 CACATGATATTGTTCATCCTCCCAT 58.992 40.000 0.00 0.00 34.09 4.00
1821 2132 6.008331 ACATGATATTGTTCATCCTCCCATG 58.992 40.000 0.00 0.00 34.09 3.66
1822 2133 5.651612 TGATATTGTTCATCCTCCCATGT 57.348 39.130 0.00 0.00 0.00 3.21
1823 2134 5.624159 TGATATTGTTCATCCTCCCATGTC 58.376 41.667 0.00 0.00 0.00 3.06
1824 2135 5.132480 TGATATTGTTCATCCTCCCATGTCA 59.868 40.000 0.00 0.00 0.00 3.58
1825 2136 4.531357 ATTGTTCATCCTCCCATGTCAT 57.469 40.909 0.00 0.00 0.00 3.06
1826 2137 3.286329 TGTTCATCCTCCCATGTCATG 57.714 47.619 5.79 5.79 0.00 3.07
1827 2138 2.845586 TGTTCATCCTCCCATGTCATGA 59.154 45.455 14.67 0.00 0.00 3.07
1828 2139 3.266513 TGTTCATCCTCCCATGTCATGAA 59.733 43.478 14.67 1.36 32.33 2.57
1829 2140 4.079615 TGTTCATCCTCCCATGTCATGAAT 60.080 41.667 14.67 0.00 36.22 2.57
1830 2141 4.801521 TCATCCTCCCATGTCATGAATT 57.198 40.909 14.67 0.00 0.00 2.17
1831 2142 5.133383 TCATCCTCCCATGTCATGAATTT 57.867 39.130 14.67 0.00 0.00 1.82
1832 2143 4.891168 TCATCCTCCCATGTCATGAATTTG 59.109 41.667 14.67 4.65 0.00 2.32
1833 2144 4.320546 TCCTCCCATGTCATGAATTTGT 57.679 40.909 14.67 0.00 0.00 2.83
1834 2145 4.272489 TCCTCCCATGTCATGAATTTGTC 58.728 43.478 14.67 0.00 0.00 3.18
1835 2146 4.018141 TCCTCCCATGTCATGAATTTGTCT 60.018 41.667 14.67 0.00 0.00 3.41
1836 2147 4.708421 CCTCCCATGTCATGAATTTGTCTT 59.292 41.667 14.67 0.00 0.00 3.01
1837 2148 5.186409 CCTCCCATGTCATGAATTTGTCTTT 59.814 40.000 14.67 0.00 0.00 2.52
1838 2149 6.295462 CCTCCCATGTCATGAATTTGTCTTTT 60.295 38.462 14.67 0.00 0.00 2.27
1839 2150 7.065120 TCCCATGTCATGAATTTGTCTTTTT 57.935 32.000 14.67 0.00 0.00 1.94
1877 2188 9.959749 TTCAAGGTATTTCATAAGTTTTCACAC 57.040 29.630 0.00 0.00 0.00 3.82
1878 2189 9.126151 TCAAGGTATTTCATAAGTTTTCACACA 57.874 29.630 0.00 0.00 0.00 3.72
1879 2190 9.912634 CAAGGTATTTCATAAGTTTTCACACAT 57.087 29.630 0.00 0.00 0.00 3.21
1893 2204 9.905713 AGTTTTCACACATATACATAACATCCT 57.094 29.630 0.00 0.00 0.00 3.24
1896 2207 9.679661 TTTCACACATATACATAACATCCTTGT 57.320 29.630 0.00 0.00 37.82 3.16
1898 2209 9.679661 TCACACATATACATAACATCCTTGTTT 57.320 29.630 0.00 0.00 43.57 2.83
1905 2216 6.892658 ACATAACATCCTTGTTTACTTGCA 57.107 33.333 0.00 0.00 43.57 4.08
1906 2217 6.677913 ACATAACATCCTTGTTTACTTGCAC 58.322 36.000 0.00 0.00 43.57 4.57
1907 2218 6.264292 ACATAACATCCTTGTTTACTTGCACA 59.736 34.615 0.00 0.00 43.57 4.57
1908 2219 5.590530 AACATCCTTGTTTACTTGCACAA 57.409 34.783 0.00 0.00 43.57 3.33
1909 2220 5.590530 ACATCCTTGTTTACTTGCACAAA 57.409 34.783 0.00 0.00 32.53 2.83
1910 2221 6.160576 ACATCCTTGTTTACTTGCACAAAT 57.839 33.333 0.00 0.00 32.53 2.32
1911 2222 6.581712 ACATCCTTGTTTACTTGCACAAATT 58.418 32.000 0.00 0.00 32.53 1.82
1912 2223 7.047271 ACATCCTTGTTTACTTGCACAAATTT 58.953 30.769 0.00 0.00 32.53 1.82
1913 2224 7.552330 ACATCCTTGTTTACTTGCACAAATTTT 59.448 29.630 0.00 0.00 32.53 1.82
1914 2225 7.913674 TCCTTGTTTACTTGCACAAATTTTT 57.086 28.000 0.00 0.00 32.53 1.94
1935 2246 6.902771 TTTTCAGATATTTTTGGAACGGGA 57.097 33.333 0.00 0.00 0.00 5.14
1936 2247 6.902771 TTTCAGATATTTTTGGAACGGGAA 57.097 33.333 0.00 0.00 0.00 3.97
1937 2248 6.509418 TTCAGATATTTTTGGAACGGGAAG 57.491 37.500 0.00 0.00 0.00 3.46
1938 2249 5.566469 TCAGATATTTTTGGAACGGGAAGT 58.434 37.500 0.00 0.00 0.00 3.01
1940 2251 6.492087 TCAGATATTTTTGGAACGGGAAGTTT 59.508 34.615 0.00 0.00 44.35 2.66
1941 2252 6.586082 CAGATATTTTTGGAACGGGAAGTTTG 59.414 38.462 0.00 0.00 44.35 2.93
1942 2253 6.492087 AGATATTTTTGGAACGGGAAGTTTGA 59.508 34.615 0.00 0.00 44.35 2.69
1943 2254 4.803098 TTTTTGGAACGGGAAGTTTGAA 57.197 36.364 0.00 0.00 44.35 2.69
1944 2255 5.346181 TTTTTGGAACGGGAAGTTTGAAT 57.654 34.783 0.00 0.00 44.35 2.57
1945 2256 5.346181 TTTTGGAACGGGAAGTTTGAATT 57.654 34.783 0.00 0.00 44.35 2.17
1946 2257 5.346181 TTTGGAACGGGAAGTTTGAATTT 57.654 34.783 0.00 0.00 44.35 1.82
1947 2258 5.346181 TTGGAACGGGAAGTTTGAATTTT 57.654 34.783 0.00 0.00 44.35 1.82
1948 2259 4.688021 TGGAACGGGAAGTTTGAATTTTG 58.312 39.130 0.00 0.00 44.35 2.44
1949 2260 4.402793 TGGAACGGGAAGTTTGAATTTTGA 59.597 37.500 0.00 0.00 44.35 2.69
1950 2261 5.069781 TGGAACGGGAAGTTTGAATTTTGAT 59.930 36.000 0.00 0.00 44.35 2.57
1951 2262 5.989168 GGAACGGGAAGTTTGAATTTTGATT 59.011 36.000 0.00 0.00 44.35 2.57
1952 2263 6.481976 GGAACGGGAAGTTTGAATTTTGATTT 59.518 34.615 0.00 0.00 44.35 2.17
1953 2264 7.011950 GGAACGGGAAGTTTGAATTTTGATTTT 59.988 33.333 0.00 0.00 44.35 1.82
1954 2265 7.857734 ACGGGAAGTTTGAATTTTGATTTTT 57.142 28.000 0.00 0.00 0.00 1.94
1978 2289 6.907206 TTTTCAAAATTTCAAGCTCCAGTG 57.093 33.333 0.00 0.00 0.00 3.66
1979 2290 5.850557 TTCAAAATTTCAAGCTCCAGTGA 57.149 34.783 0.00 0.00 0.00 3.41
1980 2291 5.443185 TCAAAATTTCAAGCTCCAGTGAG 57.557 39.130 0.00 0.00 41.84 3.51
1988 2299 3.686760 CTCCAGTGAGCTCGGTCA 58.313 61.111 9.64 0.00 0.00 4.02
1989 2300 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
1990 2301 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
1991 2302 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
1992 2303 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
1993 2304 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
1994 2305 0.468226 AGTGAGCTCGGTCACCAAAA 59.532 50.000 21.54 0.00 46.94 2.44
1995 2306 1.134220 AGTGAGCTCGGTCACCAAAAA 60.134 47.619 21.54 0.00 46.94 1.94
1996 2307 1.264288 GTGAGCTCGGTCACCAAAAAG 59.736 52.381 16.18 0.00 40.96 2.27
1997 2308 0.875059 GAGCTCGGTCACCAAAAAGG 59.125 55.000 0.00 0.00 45.67 3.11
1998 2309 1.172812 AGCTCGGTCACCAAAAAGGC 61.173 55.000 0.00 0.00 43.14 4.35
1999 2310 1.574428 CTCGGTCACCAAAAAGGCG 59.426 57.895 0.00 0.00 43.14 5.52
2000 2311 1.153127 TCGGTCACCAAAAAGGCGT 60.153 52.632 0.00 0.00 43.14 5.68
2001 2312 0.748729 TCGGTCACCAAAAAGGCGTT 60.749 50.000 0.00 0.00 43.14 4.84
2002 2313 0.317519 CGGTCACCAAAAAGGCGTTC 60.318 55.000 0.00 0.00 43.14 3.95
2003 2314 1.029681 GGTCACCAAAAAGGCGTTCT 58.970 50.000 0.00 0.00 43.14 3.01
2004 2315 1.001706 GGTCACCAAAAAGGCGTTCTC 60.002 52.381 0.00 0.00 43.14 2.87
2005 2316 0.941542 TCACCAAAAAGGCGTTCTCG 59.058 50.000 0.00 0.00 43.14 4.04
2006 2317 0.661020 CACCAAAAAGGCGTTCTCGT 59.339 50.000 0.00 0.00 43.14 4.18
2007 2318 0.661020 ACCAAAAAGGCGTTCTCGTG 59.339 50.000 0.00 0.00 43.14 4.35
2008 2319 0.941542 CCAAAAAGGCGTTCTCGTGA 59.058 50.000 0.00 0.00 39.49 4.35
2009 2320 1.332375 CCAAAAAGGCGTTCTCGTGAA 59.668 47.619 0.00 0.00 39.49 3.18
2010 2321 2.372350 CAAAAAGGCGTTCTCGTGAAC 58.628 47.619 18.11 18.11 46.59 3.18
2019 2330 3.761311 GTTCTCGTGAACGGAGATAGT 57.239 47.619 13.95 0.00 42.39 2.12
2020 2331 4.871993 GTTCTCGTGAACGGAGATAGTA 57.128 45.455 13.95 0.00 42.39 1.82
2021 2332 4.586334 GTTCTCGTGAACGGAGATAGTAC 58.414 47.826 13.95 0.00 42.39 2.73
2022 2333 2.862536 TCTCGTGAACGGAGATAGTACG 59.137 50.000 2.59 0.00 40.29 3.67
2023 2334 2.606725 CTCGTGAACGGAGATAGTACGT 59.393 50.000 2.59 0.00 43.43 3.57
2031 2342 5.088141 ACGGAGATAGTACGTTGTAATCG 57.912 43.478 0.00 0.00 37.61 3.34
2032 2343 4.572389 ACGGAGATAGTACGTTGTAATCGT 59.428 41.667 0.00 0.00 43.86 3.73
2033 2344 5.753438 ACGGAGATAGTACGTTGTAATCGTA 59.247 40.000 0.00 0.00 41.72 3.43
2034 2345 6.425114 ACGGAGATAGTACGTTGTAATCGTAT 59.575 38.462 0.00 0.00 43.73 3.06
2035 2346 6.735510 CGGAGATAGTACGTTGTAATCGTATG 59.264 42.308 0.00 0.00 43.73 2.39
2036 2347 7.570140 CGGAGATAGTACGTTGTAATCGTATGT 60.570 40.741 0.00 0.00 43.73 2.29
2037 2348 8.072567 GGAGATAGTACGTTGTAATCGTATGTT 58.927 37.037 0.00 0.00 43.73 2.71
2038 2349 9.443283 GAGATAGTACGTTGTAATCGTATGTTT 57.557 33.333 0.00 0.00 43.73 2.83
2043 2354 9.793252 AGTACGTTGTAATCGTATGTTTATCTT 57.207 29.630 0.00 0.00 43.73 2.40
2044 2355 9.825391 GTACGTTGTAATCGTATGTTTATCTTG 57.175 33.333 0.00 0.00 43.73 3.02
2045 2356 8.692110 ACGTTGTAATCGTATGTTTATCTTGA 57.308 30.769 0.00 0.00 39.78 3.02
2046 2357 8.804743 ACGTTGTAATCGTATGTTTATCTTGAG 58.195 33.333 0.00 0.00 39.78 3.02
2047 2358 9.016623 CGTTGTAATCGTATGTTTATCTTGAGA 57.983 33.333 0.00 0.00 0.00 3.27
2066 2377 9.119418 TCTTGAGAAAATAAACTGAACATGACA 57.881 29.630 0.00 0.00 0.00 3.58
2067 2378 9.390795 CTTGAGAAAATAAACTGAACATGACAG 57.609 33.333 17.82 17.82 40.68 3.51
2069 2380 8.559536 TGAGAAAATAAACTGAACATGACAGTC 58.440 33.333 22.46 12.85 46.01 3.51
2070 2381 8.682936 AGAAAATAAACTGAACATGACAGTCT 57.317 30.769 22.46 15.55 46.01 3.24
2071 2382 9.778741 AGAAAATAAACTGAACATGACAGTCTA 57.221 29.630 22.46 16.77 46.01 2.59
2072 2383 9.813080 GAAAATAAACTGAACATGACAGTCTAC 57.187 33.333 22.46 11.47 46.01 2.59
2073 2384 7.582435 AATAAACTGAACATGACAGTCTACG 57.418 36.000 22.46 4.98 46.01 3.51
2074 2385 4.585955 AACTGAACATGACAGTCTACGT 57.414 40.909 22.46 0.00 46.01 3.57
2075 2386 4.162096 ACTGAACATGACAGTCTACGTC 57.838 45.455 18.81 0.00 43.84 4.34
2076 2387 3.057456 ACTGAACATGACAGTCTACGTCC 60.057 47.826 18.81 0.00 43.84 4.79
2077 2388 2.888414 TGAACATGACAGTCTACGTCCA 59.112 45.455 0.00 0.00 32.15 4.02
2078 2389 3.057526 TGAACATGACAGTCTACGTCCAG 60.058 47.826 0.00 0.00 32.15 3.86
2079 2390 2.515854 ACATGACAGTCTACGTCCAGT 58.484 47.619 0.00 0.00 32.15 4.00
2080 2391 2.229062 ACATGACAGTCTACGTCCAGTG 59.771 50.000 0.00 0.00 32.15 3.66
2081 2392 0.596577 TGACAGTCTACGTCCAGTGC 59.403 55.000 1.31 0.00 32.15 4.40
2082 2393 0.454620 GACAGTCTACGTCCAGTGCG 60.455 60.000 0.00 0.00 0.00 5.34
2083 2394 1.801913 CAGTCTACGTCCAGTGCGC 60.802 63.158 0.00 0.00 0.00 6.09
2084 2395 1.972223 AGTCTACGTCCAGTGCGCT 60.972 57.895 9.73 0.00 0.00 5.92
2085 2396 1.080705 GTCTACGTCCAGTGCGCTT 60.081 57.895 9.73 0.00 0.00 4.68
2086 2397 0.169672 GTCTACGTCCAGTGCGCTTA 59.830 55.000 9.73 0.00 0.00 3.09
2087 2398 0.169672 TCTACGTCCAGTGCGCTTAC 59.830 55.000 9.73 0.00 0.00 2.34
2088 2399 1.132199 CTACGTCCAGTGCGCTTACG 61.132 60.000 23.38 23.38 44.07 3.18
2089 2400 1.576451 TACGTCCAGTGCGCTTACGA 61.576 55.000 28.89 15.26 43.93 3.43
2090 2401 2.152699 CGTCCAGTGCGCTTACGAG 61.153 63.158 21.52 0.70 43.93 4.18
2091 2402 1.211969 GTCCAGTGCGCTTACGAGA 59.788 57.895 9.73 0.00 43.93 4.04
2092 2403 0.798771 GTCCAGTGCGCTTACGAGAG 60.799 60.000 9.73 0.00 43.93 3.20
2094 2405 0.450583 CCAGTGCGCTTACGAGAGTA 59.549 55.000 9.73 0.00 46.88 2.59
2118 2429 4.285807 CACTCACGTGTCCAAAATTTGA 57.714 40.909 16.51 0.00 36.39 2.69
2119 2430 4.035017 CACTCACGTGTCCAAAATTTGAC 58.965 43.478 16.51 4.58 36.39 3.18
2120 2431 3.945285 ACTCACGTGTCCAAAATTTGACT 59.055 39.130 16.51 0.00 0.00 3.41
2121 2432 4.398044 ACTCACGTGTCCAAAATTTGACTT 59.602 37.500 16.51 0.00 0.00 3.01
2122 2433 5.587043 ACTCACGTGTCCAAAATTTGACTTA 59.413 36.000 16.51 0.00 0.00 2.24
2123 2434 6.094325 ACTCACGTGTCCAAAATTTGACTTAA 59.906 34.615 16.51 0.00 0.00 1.85
2124 2435 6.259638 TCACGTGTCCAAAATTTGACTTAAC 58.740 36.000 16.51 0.00 0.00 2.01
2125 2436 6.030849 CACGTGTCCAAAATTTGACTTAACA 58.969 36.000 7.58 1.34 0.00 2.41
2126 2437 6.020995 CACGTGTCCAAAATTTGACTTAACAC 60.021 38.462 7.58 11.22 33.07 3.32
2127 2438 6.030849 CGTGTCCAAAATTTGACTTAACACA 58.969 36.000 7.37 0.00 35.42 3.72
2128 2439 6.695278 CGTGTCCAAAATTTGACTTAACACAT 59.305 34.615 7.37 0.00 35.42 3.21
2129 2440 7.858382 CGTGTCCAAAATTTGACTTAACACATA 59.142 33.333 7.37 0.00 35.42 2.29
2130 2441 9.522804 GTGTCCAAAATTTGACTTAACACATAA 57.477 29.630 7.37 0.00 35.69 1.90
2131 2442 9.522804 TGTCCAAAATTTGACTTAACACATAAC 57.477 29.630 7.37 0.00 0.00 1.89
2132 2443 8.687301 GTCCAAAATTTGACTTAACACATAACG 58.313 33.333 7.37 0.00 0.00 3.18
2133 2444 8.407064 TCCAAAATTTGACTTAACACATAACGT 58.593 29.630 7.37 0.00 0.00 3.99
2168 2479 7.402811 TTTTTCAATACTAGACACTCGTGTG 57.597 36.000 15.67 15.67 45.05 3.82
2174 2485 2.028484 GACACTCGTGTGGCCGAA 59.972 61.111 20.62 0.00 46.20 4.30
2175 2486 1.593209 GACACTCGTGTGGCCGAAA 60.593 57.895 20.62 0.00 46.20 3.46
2176 2487 0.949105 GACACTCGTGTGGCCGAAAT 60.949 55.000 20.62 0.00 46.20 2.17
2177 2488 2.244000 CACTCGTGTGGCCGAAATT 58.756 52.632 9.74 0.00 40.33 1.82
2178 2489 0.591170 CACTCGTGTGGCCGAAATTT 59.409 50.000 9.74 0.00 40.33 1.82
2179 2490 0.591170 ACTCGTGTGGCCGAAATTTG 59.409 50.000 0.00 0.00 36.24 2.32
2180 2491 0.871722 CTCGTGTGGCCGAAATTTGA 59.128 50.000 0.00 0.00 36.24 2.69
2181 2492 0.589223 TCGTGTGGCCGAAATTTGAC 59.411 50.000 0.00 0.00 33.15 3.18
2182 2493 0.591170 CGTGTGGCCGAAATTTGACT 59.409 50.000 0.00 0.00 0.00 3.41
2183 2494 1.001815 CGTGTGGCCGAAATTTGACTT 60.002 47.619 0.00 0.00 0.00 3.01
2184 2495 2.224549 CGTGTGGCCGAAATTTGACTTA 59.775 45.455 0.00 0.00 0.00 2.24
2185 2496 3.304123 CGTGTGGCCGAAATTTGACTTAA 60.304 43.478 0.00 0.00 0.00 1.85
2186 2497 3.978855 GTGTGGCCGAAATTTGACTTAAC 59.021 43.478 0.00 0.00 0.00 2.01
2187 2498 3.632604 TGTGGCCGAAATTTGACTTAACA 59.367 39.130 0.00 0.00 0.00 2.41
2188 2499 3.978855 GTGGCCGAAATTTGACTTAACAC 59.021 43.478 0.00 0.00 0.00 3.32
2189 2500 3.231160 GGCCGAAATTTGACTTAACACG 58.769 45.455 0.00 0.00 0.00 4.49
2190 2501 3.304190 GGCCGAAATTTGACTTAACACGT 60.304 43.478 0.00 0.00 0.00 4.49
2191 2502 3.662186 GCCGAAATTTGACTTAACACGTG 59.338 43.478 15.48 15.48 0.00 4.49
2192 2503 4.553156 GCCGAAATTTGACTTAACACGTGA 60.553 41.667 25.01 0.00 0.00 4.35
2193 2504 4.901881 CCGAAATTTGACTTAACACGTGAC 59.098 41.667 25.01 6.61 0.00 3.67
2194 2505 5.277154 CCGAAATTTGACTTAACACGTGACT 60.277 40.000 25.01 11.37 0.00 3.41
2195 2506 6.189567 CGAAATTTGACTTAACACGTGACTT 58.810 36.000 25.01 9.78 0.00 3.01
2196 2507 7.339207 CGAAATTTGACTTAACACGTGACTTA 58.661 34.615 25.01 8.64 0.00 2.24
2197 2508 7.847078 CGAAATTTGACTTAACACGTGACTTAA 59.153 33.333 25.01 15.91 0.00 1.85
2198 2509 8.831000 AAATTTGACTTAACACGTGACTTAAC 57.169 30.769 25.01 9.74 0.00 2.01
2199 2510 6.964741 TTTGACTTAACACGTGACTTAACA 57.035 33.333 25.01 12.20 0.00 2.41
2200 2511 5.954434 TGACTTAACACGTGACTTAACAC 57.046 39.130 25.01 11.56 37.42 3.32
2201 2512 5.409211 TGACTTAACACGTGACTTAACACA 58.591 37.500 25.01 13.65 40.34 3.72
2202 2513 6.044046 TGACTTAACACGTGACTTAACACAT 58.956 36.000 25.01 1.81 40.34 3.21
2203 2514 6.019398 TGACTTAACACGTGACTTAACACATG 60.019 38.462 25.01 7.74 39.39 3.21
2204 2515 6.044046 ACTTAACACGTGACTTAACACATGA 58.956 36.000 25.01 0.00 36.30 3.07
2205 2516 4.789095 AACACGTGACTTAACACATGAC 57.211 40.909 25.01 0.00 36.30 3.06
2206 2517 2.792674 ACACGTGACTTAACACATGACG 59.207 45.455 25.01 0.00 36.30 4.35
2207 2518 2.792674 CACGTGACTTAACACATGACGT 59.207 45.455 10.90 0.00 36.30 4.34
2208 2519 3.976306 CACGTGACTTAACACATGACGTA 59.024 43.478 10.90 0.00 36.30 3.57
2209 2520 4.088071 CACGTGACTTAACACATGACGTAG 59.912 45.833 10.90 0.00 36.30 3.51
2210 2521 4.224433 CGTGACTTAACACATGACGTAGT 58.776 43.478 0.00 0.00 42.01 2.73
2211 2522 5.049474 ACGTGACTTAACACATGACGTAGTA 60.049 40.000 0.00 0.00 40.22 1.82
2212 2523 5.282310 CGTGACTTAACACATGACGTAGTAC 59.718 44.000 0.00 0.00 40.22 2.73
2213 2524 6.144854 GTGACTTAACACATGACGTAGTACA 58.855 40.000 0.00 0.00 40.05 2.90
2214 2525 6.805271 GTGACTTAACACATGACGTAGTACAT 59.195 38.462 0.00 0.00 40.05 2.29
2215 2526 7.327761 GTGACTTAACACATGACGTAGTACATT 59.672 37.037 0.00 0.00 40.05 2.71
2228 2539 7.642071 ACGTAGTACATTGTAATTGAACGTT 57.358 32.000 14.45 0.00 41.94 3.99
2229 2540 8.075593 ACGTAGTACATTGTAATTGAACGTTT 57.924 30.769 14.45 0.00 41.94 3.60
2230 2541 8.550376 ACGTAGTACATTGTAATTGAACGTTTT 58.450 29.630 14.45 0.00 41.94 2.43
2231 2542 9.372541 CGTAGTACATTGTAATTGAACGTTTTT 57.627 29.630 0.46 0.00 0.00 1.94
2234 2545 9.228636 AGTACATTGTAATTGAACGTTTTTCAC 57.771 29.630 0.46 0.00 0.00 3.18
2235 2546 9.011407 GTACATTGTAATTGAACGTTTTTCACA 57.989 29.630 0.46 0.94 0.00 3.58
2236 2547 8.641499 ACATTGTAATTGAACGTTTTTCACAT 57.359 26.923 0.46 0.00 0.00 3.21
2237 2548 8.538856 ACATTGTAATTGAACGTTTTTCACATG 58.461 29.630 0.46 6.79 0.00 3.21
2238 2549 6.503616 TGTAATTGAACGTTTTTCACATGC 57.496 33.333 0.46 0.00 0.00 4.06
2239 2550 6.036470 TGTAATTGAACGTTTTTCACATGCA 58.964 32.000 0.46 0.00 0.00 3.96
2240 2551 6.531594 TGTAATTGAACGTTTTTCACATGCAA 59.468 30.769 0.46 0.00 0.00 4.08
2241 2552 5.640218 ATTGAACGTTTTTCACATGCAAG 57.360 34.783 0.46 0.00 0.00 4.01
2242 2553 3.443037 TGAACGTTTTTCACATGCAAGG 58.557 40.909 0.46 0.00 0.00 3.61
2243 2554 2.507339 ACGTTTTTCACATGCAAGGG 57.493 45.000 0.00 0.00 0.00 3.95
2244 2555 1.139163 CGTTTTTCACATGCAAGGGC 58.861 50.000 0.00 0.00 41.68 5.19
2245 2556 1.269726 CGTTTTTCACATGCAAGGGCT 60.270 47.619 0.00 0.00 41.91 5.19
2246 2557 2.030363 CGTTTTTCACATGCAAGGGCTA 60.030 45.455 0.00 0.00 41.91 3.93
2247 2558 3.551863 CGTTTTTCACATGCAAGGGCTAA 60.552 43.478 0.00 0.00 41.91 3.09
2248 2559 4.376146 GTTTTTCACATGCAAGGGCTAAA 58.624 39.130 0.00 0.00 41.91 1.85
2249 2560 4.888326 TTTTCACATGCAAGGGCTAAAT 57.112 36.364 0.00 0.00 41.91 1.40
2250 2561 4.888326 TTTCACATGCAAGGGCTAAATT 57.112 36.364 0.00 0.00 41.91 1.82
2251 2562 4.888326 TTCACATGCAAGGGCTAAATTT 57.112 36.364 0.00 0.00 41.91 1.82
2252 2563 5.991933 TTCACATGCAAGGGCTAAATTTA 57.008 34.783 0.00 0.00 41.91 1.40
2253 2564 5.991933 TCACATGCAAGGGCTAAATTTAA 57.008 34.783 0.00 0.00 41.91 1.52
2254 2565 5.964758 TCACATGCAAGGGCTAAATTTAAG 58.035 37.500 0.00 0.00 41.91 1.85
2255 2566 5.714333 TCACATGCAAGGGCTAAATTTAAGA 59.286 36.000 0.00 0.00 41.91 2.10
2256 2567 6.380846 TCACATGCAAGGGCTAAATTTAAGAT 59.619 34.615 0.00 0.00 41.91 2.40
2257 2568 7.559533 TCACATGCAAGGGCTAAATTTAAGATA 59.440 33.333 0.00 0.00 41.91 1.98
2258 2569 8.196771 CACATGCAAGGGCTAAATTTAAGATAA 58.803 33.333 0.00 0.00 41.91 1.75
2259 2570 8.757877 ACATGCAAGGGCTAAATTTAAGATAAA 58.242 29.630 0.00 0.00 41.91 1.40
2260 2571 9.598517 CATGCAAGGGCTAAATTTAAGATAAAA 57.401 29.630 0.00 0.00 41.91 1.52
2262 2573 9.430623 TGCAAGGGCTAAATTTAAGATAAAAAC 57.569 29.630 0.00 0.00 41.91 2.43
2263 2574 9.653287 GCAAGGGCTAAATTTAAGATAAAAACT 57.347 29.630 0.00 0.00 36.96 2.66
2287 2598 9.847706 ACTATACATTTGCAGATCTAATCTACG 57.152 33.333 0.00 0.00 37.58 3.51
2288 2599 9.847706 CTATACATTTGCAGATCTAATCTACGT 57.152 33.333 0.00 0.00 37.58 3.57
2290 2601 9.847706 ATACATTTGCAGATCTAATCTACGTAG 57.152 33.333 16.73 16.73 37.58 3.51
2292 2603 8.847196 ACATTTGCAGATCTAATCTACGTAGTA 58.153 33.333 21.53 9.50 45.11 1.82
2293 2604 9.847706 CATTTGCAGATCTAATCTACGTAGTAT 57.152 33.333 21.53 13.90 44.56 2.12
2294 2605 9.847706 ATTTGCAGATCTAATCTACGTAGTATG 57.152 33.333 21.53 10.15 44.56 2.39
2295 2606 8.617290 TTGCAGATCTAATCTACGTAGTATGA 57.383 34.615 21.53 15.14 44.56 2.15
2296 2607 8.617290 TGCAGATCTAATCTACGTAGTATGAA 57.383 34.615 21.53 2.87 44.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.229529 TCCCCTCTCCCACTGTTCC 60.230 63.158 0.00 0.00 0.00 3.62
1 2 1.268283 CCTCCCCTCTCCCACTGTTC 61.268 65.000 0.00 0.00 0.00 3.18
2 3 1.229658 CCTCCCCTCTCCCACTGTT 60.230 63.158 0.00 0.00 0.00 3.16
3 4 2.452114 CCTCCCCTCTCCCACTGT 59.548 66.667 0.00 0.00 0.00 3.55
5 6 3.700350 CCCCTCCCCTCTCCCACT 61.700 72.222 0.00 0.00 0.00 4.00
6 7 4.825679 CCCCCTCCCCTCTCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
8 9 4.179599 CTCCCCCTCCCCTCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
9 10 4.179599 CCTCCCCCTCCCCTCTCC 62.180 77.778 0.00 0.00 0.00 3.71
10 11 4.179599 CCCTCCCCCTCCCCTCTC 62.180 77.778 0.00 0.00 0.00 3.20
11 12 4.761304 TCCCTCCCCCTCCCCTCT 62.761 72.222 0.00 0.00 0.00 3.69
12 13 4.179599 CTCCCTCCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
15 16 4.179599 CTCCTCCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
16 17 3.369388 ACTCCTCCCTCCCCCTCC 61.369 72.222 0.00 0.00 0.00 4.30
17 18 2.041405 CACTCCTCCCTCCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
18 19 3.700350 CCACTCCTCCCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
19 20 3.695825 TCCACTCCTCCCTCCCCC 61.696 72.222 0.00 0.00 0.00 5.40
20 21 2.041405 CTCCACTCCTCCCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
21 22 1.075600 CTCTCCACTCCTCCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
22 23 0.106217 CTCTCTCCACTCCTCCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
23 24 0.106217 CCTCTCTCCACTCCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
24 25 0.553862 TCCTCTCTCCACTCCTCCCT 60.554 60.000 0.00 0.00 0.00 4.20
25 26 0.106217 CTCCTCTCTCCACTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
26 27 0.755327 GCTCCTCTCTCCACTCCTCC 60.755 65.000 0.00 0.00 0.00 4.30
27 28 0.755327 GGCTCCTCTCTCCACTCCTC 60.755 65.000 0.00 0.00 0.00 3.71
28 29 1.309688 GGCTCCTCTCTCCACTCCT 59.690 63.158 0.00 0.00 0.00 3.69
29 30 0.398381 ATGGCTCCTCTCTCCACTCC 60.398 60.000 0.00 0.00 31.94 3.85
30 31 0.752054 CATGGCTCCTCTCTCCACTC 59.248 60.000 0.00 0.00 31.94 3.51
31 32 0.337773 TCATGGCTCCTCTCTCCACT 59.662 55.000 0.00 0.00 31.94 4.00
32 33 1.138661 CTTCATGGCTCCTCTCTCCAC 59.861 57.143 0.00 0.00 31.94 4.02
33 34 1.273495 ACTTCATGGCTCCTCTCTCCA 60.273 52.381 0.00 0.00 0.00 3.86
34 35 1.412343 GACTTCATGGCTCCTCTCTCC 59.588 57.143 0.00 0.00 0.00 3.71
35 36 2.387757 AGACTTCATGGCTCCTCTCTC 58.612 52.381 0.00 0.00 0.00 3.20
36 37 2.500910 CAAGACTTCATGGCTCCTCTCT 59.499 50.000 0.00 0.00 28.37 3.10
37 38 2.903798 CAAGACTTCATGGCTCCTCTC 58.096 52.381 0.00 0.00 28.37 3.20
38 39 1.065564 GCAAGACTTCATGGCTCCTCT 60.066 52.381 0.00 0.00 28.37 3.69
39 40 1.377536 GCAAGACTTCATGGCTCCTC 58.622 55.000 0.00 0.00 28.37 3.71
40 41 0.034670 GGCAAGACTTCATGGCTCCT 60.035 55.000 1.11 0.00 37.20 3.69
41 42 1.034292 GGGCAAGACTTCATGGCTCC 61.034 60.000 7.79 0.00 39.60 4.70
42 43 0.034670 AGGGCAAGACTTCATGGCTC 60.035 55.000 7.79 0.00 39.60 4.70
43 44 0.034670 GAGGGCAAGACTTCATGGCT 60.035 55.000 7.79 0.00 39.60 4.75
44 45 0.034670 AGAGGGCAAGACTTCATGGC 60.035 55.000 0.00 0.00 39.05 4.40
45 46 1.004044 ACAGAGGGCAAGACTTCATGG 59.996 52.381 0.00 0.00 0.00 3.66
46 47 2.082231 CACAGAGGGCAAGACTTCATG 58.918 52.381 0.00 0.00 0.00 3.07
47 48 1.701847 ACACAGAGGGCAAGACTTCAT 59.298 47.619 0.00 0.00 0.00 2.57
48 49 1.070758 GACACAGAGGGCAAGACTTCA 59.929 52.381 0.00 0.00 0.00 3.02
49 50 1.070758 TGACACAGAGGGCAAGACTTC 59.929 52.381 0.00 0.00 0.00 3.01
50 51 1.131638 TGACACAGAGGGCAAGACTT 58.868 50.000 0.00 0.00 0.00 3.01
51 52 0.394565 GTGACACAGAGGGCAAGACT 59.605 55.000 0.00 0.00 0.00 3.24
52 53 0.106708 TGTGACACAGAGGGCAAGAC 59.893 55.000 3.56 0.00 0.00 3.01
53 54 0.836606 TTGTGACACAGAGGGCAAGA 59.163 50.000 8.55 0.00 0.00 3.02
54 55 1.233019 CTTGTGACACAGAGGGCAAG 58.767 55.000 8.55 0.00 0.00 4.01
55 56 0.819259 GCTTGTGACACAGAGGGCAA 60.819 55.000 8.55 0.00 0.00 4.52
56 57 1.227943 GCTTGTGACACAGAGGGCA 60.228 57.895 8.55 0.00 0.00 5.36
57 58 0.536006 AAGCTTGTGACACAGAGGGC 60.536 55.000 8.55 11.53 0.00 5.19
58 59 1.605710 CAAAGCTTGTGACACAGAGGG 59.394 52.381 8.55 2.50 0.00 4.30
59 60 2.564771 TCAAAGCTTGTGACACAGAGG 58.435 47.619 8.55 4.86 0.00 3.69
60 61 3.562973 ACATCAAAGCTTGTGACACAGAG 59.437 43.478 8.55 10.22 0.00 3.35
61 62 3.544684 ACATCAAAGCTTGTGACACAGA 58.455 40.909 8.55 1.92 0.00 3.41
62 63 3.976793 ACATCAAAGCTTGTGACACAG 57.023 42.857 8.55 4.70 0.00 3.66
63 64 4.717233 AAACATCAAAGCTTGTGACACA 57.283 36.364 3.56 3.56 0.00 3.72
64 65 4.268405 CCAAAACATCAAAGCTTGTGACAC 59.732 41.667 0.00 0.00 0.00 3.67
65 66 4.159321 TCCAAAACATCAAAGCTTGTGACA 59.841 37.500 0.00 0.00 0.00 3.58
66 67 4.681744 TCCAAAACATCAAAGCTTGTGAC 58.318 39.130 0.00 0.00 0.00 3.67
67 68 4.998671 TCCAAAACATCAAAGCTTGTGA 57.001 36.364 0.00 6.76 0.00 3.58
72 73 4.099881 TCTTGCTTCCAAAACATCAAAGCT 59.900 37.500 6.91 0.00 42.15 3.74
79 80 6.585416 ACTTCATTTCTTGCTTCCAAAACAT 58.415 32.000 0.00 0.00 0.00 2.71
91 92 5.945784 TGGGTGAGGATAACTTCATTTCTTG 59.054 40.000 0.00 0.00 34.79 3.02
92 93 5.946377 GTGGGTGAGGATAACTTCATTTCTT 59.054 40.000 0.00 0.00 34.79 2.52
154 156 2.536365 CTGTGCATCAATGGTCAATGC 58.464 47.619 0.00 0.00 44.72 3.56
309 324 1.123928 CCTTCCTCTATGGCCTTCGT 58.876 55.000 3.32 0.00 35.26 3.85
369 384 2.030562 ACGTTGGCCAGAAGACGG 59.969 61.111 26.59 12.34 39.63 4.79
461 476 4.393155 TGCGGCGCTGATTCTGGT 62.393 61.111 33.26 0.00 0.00 4.00
543 564 3.370527 GCTAATTAAGAGTGGTGGGCTGA 60.371 47.826 0.00 0.00 0.00 4.26
571 600 1.370064 GAGGGCTACAACCACGTGT 59.630 57.895 15.65 0.00 35.43 4.49
606 637 1.472201 GCAGATCTGTGGCGATCTTGA 60.472 52.381 23.38 0.00 45.91 3.02
614 645 0.524862 CCAAAGTGCAGATCTGTGGC 59.475 55.000 23.38 10.43 34.13 5.01
628 659 5.588648 TGACAGTAAACTCCAAAGTCCAAAG 59.411 40.000 0.00 0.00 33.48 2.77
629 660 5.502079 TGACAGTAAACTCCAAAGTCCAAA 58.498 37.500 0.00 0.00 33.48 3.28
630 661 5.105567 TGACAGTAAACTCCAAAGTCCAA 57.894 39.130 0.00 0.00 33.48 3.53
631 662 4.163458 ACTGACAGTAAACTCCAAAGTCCA 59.837 41.667 6.24 0.00 33.48 4.02
632 663 4.704965 ACTGACAGTAAACTCCAAAGTCC 58.295 43.478 6.24 0.00 33.48 3.85
633 664 5.602628 AGACTGACAGTAAACTCCAAAGTC 58.397 41.667 8.41 0.00 33.48 3.01
634 665 5.615925 AGACTGACAGTAAACTCCAAAGT 57.384 39.130 8.41 0.00 37.32 2.66
635 666 6.146347 GCTAAGACTGACAGTAAACTCCAAAG 59.854 42.308 8.41 0.00 0.00 2.77
649 680 5.877012 TGATTGAAGATTGGCTAAGACTGAC 59.123 40.000 0.00 0.00 0.00 3.51
725 756 0.301687 CGATATCAACACGTGCTGGC 59.698 55.000 17.22 3.96 0.00 4.85
796 831 7.413877 GCTCTGTAGACATCCAAAGATTTCTTG 60.414 40.741 0.00 0.00 39.64 3.02
878 1189 2.362375 GGGAAATCTTGGGGCGCA 60.362 61.111 10.83 0.00 0.00 6.09
909 1220 0.405585 AATCTGGGGTGGTTGACAGG 59.594 55.000 0.00 0.00 0.00 4.00
911 1222 2.765689 AAAATCTGGGGTGGTTGACA 57.234 45.000 0.00 0.00 0.00 3.58
933 1244 9.623350 CACAGTGATGATCTGAACATATAGTAG 57.377 37.037 0.00 0.00 36.81 2.57
934 1245 9.354673 TCACAGTGATGATCTGAACATATAGTA 57.645 33.333 0.00 0.00 36.81 1.82
935 1246 8.242729 TCACAGTGATGATCTGAACATATAGT 57.757 34.615 0.00 0.00 36.81 2.12
936 1247 8.574737 TCTCACAGTGATGATCTGAACATATAG 58.425 37.037 2.97 0.00 36.81 1.31
941 1252 4.620097 GCTCTCACAGTGATGATCTGAACA 60.620 45.833 2.97 0.00 36.81 3.18
954 1265 0.467384 AACACTGCTGCTCTCACAGT 59.533 50.000 0.00 0.00 45.25 3.55
959 1270 2.161211 GGAAATGAACACTGCTGCTCTC 59.839 50.000 0.00 0.00 0.00 3.20
969 1280 5.173854 CGCAAGAGAAAAAGGAAATGAACAC 59.826 40.000 0.00 0.00 43.02 3.32
1143 1454 1.948104 CGGGATTAATCGGCTTCACA 58.052 50.000 9.32 0.00 0.00 3.58
1263 1574 3.328535 AATGGTGGTGGAGGAAAGTTT 57.671 42.857 0.00 0.00 0.00 2.66
1264 1575 3.763057 GTAATGGTGGTGGAGGAAAGTT 58.237 45.455 0.00 0.00 0.00 2.66
1365 1676 3.274202 GTGTTTACACAAGCGTTACACG 58.726 45.455 8.09 0.00 45.75 4.49
1429 1740 4.036971 CGGAGGGAGTACTTGTGAAGATAG 59.963 50.000 0.00 0.00 0.00 2.08
1441 1752 6.402456 AATAGTAATGAACGGAGGGAGTAC 57.598 41.667 0.00 0.00 0.00 2.73
1480 1791 7.380536 ACGCGTCTACATATATCCCATTTAAA 58.619 34.615 5.58 0.00 0.00 1.52
1488 1799 8.160342 CACAATAAAACGCGTCTACATATATCC 58.840 37.037 14.44 0.00 0.00 2.59
1489 1800 8.697067 ACACAATAAAACGCGTCTACATATATC 58.303 33.333 14.44 0.00 0.00 1.63
1496 1807 5.199726 ACAAACACAATAAAACGCGTCTAC 58.800 37.500 14.44 0.00 0.00 2.59
1502 1813 5.513495 TGAGTGAACAAACACAATAAAACGC 59.487 36.000 0.00 0.00 42.45 4.84
1503 1814 7.678194 ATGAGTGAACAAACACAATAAAACG 57.322 32.000 0.00 0.00 42.45 3.60
1510 1821 6.266168 ACAGAAATGAGTGAACAAACACAA 57.734 33.333 0.00 0.00 42.45 3.33
1521 1832 7.950512 AGACTAGATATGGACAGAAATGAGTG 58.049 38.462 0.00 0.00 0.00 3.51
1552 1863 7.052565 TGTTATAAGACGTTTTGGATCGTTC 57.947 36.000 0.83 0.00 40.39 3.95
1555 1866 6.309494 TCACTGTTATAAGACGTTTTGGATCG 59.691 38.462 0.83 0.00 0.00 3.69
1556 1867 7.591006 TCACTGTTATAAGACGTTTTGGATC 57.409 36.000 0.83 0.00 0.00 3.36
1559 1870 9.146984 TCTTATCACTGTTATAAGACGTTTTGG 57.853 33.333 16.56 0.00 39.73 3.28
1575 1886 6.030548 TCACTCCTTTCACTCTTATCACTG 57.969 41.667 0.00 0.00 0.00 3.66
1586 1897 6.238184 CCAAAAGCAATTTTCACTCCTTTCAC 60.238 38.462 0.00 0.00 0.00 3.18
1591 1902 5.205759 CTCCAAAAGCAATTTTCACTCCT 57.794 39.130 0.00 0.00 0.00 3.69
1605 1916 2.694760 GCAGGCCGAGCTCCAAAAG 61.695 63.158 14.97 0.00 0.00 2.27
1606 1917 2.672996 GCAGGCCGAGCTCCAAAA 60.673 61.111 14.97 0.00 0.00 2.44
1607 1918 3.272364 ATGCAGGCCGAGCTCCAAA 62.272 57.895 21.29 4.07 0.00 3.28
1608 1919 3.720601 ATGCAGGCCGAGCTCCAA 61.721 61.111 21.29 4.41 0.00 3.53
1609 1920 4.478371 CATGCAGGCCGAGCTCCA 62.478 66.667 21.29 0.00 0.00 3.86
1611 1922 4.166888 TCCATGCAGGCCGAGCTC 62.167 66.667 21.29 2.73 37.29 4.09
1612 1923 4.172512 CTCCATGCAGGCCGAGCT 62.173 66.667 21.29 6.98 37.29 4.09
1627 1938 5.151297 TGAAATTTGAATTTGGAGGCCTC 57.849 39.130 25.59 25.59 38.64 4.70
1628 1939 5.565455 TTGAAATTTGAATTTGGAGGCCT 57.435 34.783 3.86 3.86 38.64 5.19
1629 1940 6.631971 TTTTGAAATTTGAATTTGGAGGCC 57.368 33.333 6.44 0.00 38.64 5.19
1630 1941 8.351461 TGAATTTTGAAATTTGAATTTGGAGGC 58.649 29.630 6.44 0.00 38.64 4.70
1708 2019 9.489232 CACATGTGTGTTATGCCTTCATGCATA 62.489 40.741 18.03 1.79 43.96 3.14
1709 2020 8.774605 CACATGTGTGTTATGCCTTCATGCAT 62.775 42.308 18.03 0.00 45.66 3.96
1710 2021 2.512705 TGTGTGTTATGCCTTCATGCA 58.487 42.857 0.00 0.00 46.94 3.96
1711 2022 3.119388 ACATGTGTGTTATGCCTTCATGC 60.119 43.478 0.00 0.00 34.01 4.06
1712 2023 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
1713 2024 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
1728 2039 5.260424 TGCCCTGAAAATATACACACATGT 58.740 37.500 0.00 0.00 43.30 3.21
1729 2040 5.833406 TGCCCTGAAAATATACACACATG 57.167 39.130 0.00 0.00 0.00 3.21
1730 2041 6.849085 TTTGCCCTGAAAATATACACACAT 57.151 33.333 0.00 0.00 0.00 3.21
1731 2042 6.656632 TTTTGCCCTGAAAATATACACACA 57.343 33.333 0.00 0.00 0.00 3.72
1732 2043 7.920682 CCTATTTTGCCCTGAAAATATACACAC 59.079 37.037 0.00 0.00 37.23 3.82
1733 2044 7.617723 ACCTATTTTGCCCTGAAAATATACACA 59.382 33.333 0.00 0.00 37.23 3.72
1734 2045 8.007405 ACCTATTTTGCCCTGAAAATATACAC 57.993 34.615 0.00 0.00 37.23 2.90
1735 2046 8.474025 CAACCTATTTTGCCCTGAAAATATACA 58.526 33.333 0.00 0.00 37.23 2.29
1736 2047 8.691797 TCAACCTATTTTGCCCTGAAAATATAC 58.308 33.333 0.00 0.00 37.23 1.47
1737 2048 8.830915 TCAACCTATTTTGCCCTGAAAATATA 57.169 30.769 0.00 0.00 37.23 0.86
1738 2049 7.732222 TCAACCTATTTTGCCCTGAAAATAT 57.268 32.000 0.00 0.00 37.23 1.28
1739 2050 7.546250 TTCAACCTATTTTGCCCTGAAAATA 57.454 32.000 0.00 0.00 36.94 1.40
1740 2051 6.432403 TTCAACCTATTTTGCCCTGAAAAT 57.568 33.333 0.00 0.00 38.69 1.82
1741 2052 5.878406 TTCAACCTATTTTGCCCTGAAAA 57.122 34.783 0.00 0.00 0.00 2.29
1742 2053 5.878406 TTTCAACCTATTTTGCCCTGAAA 57.122 34.783 0.00 0.00 0.00 2.69
1743 2054 5.541868 TCATTTCAACCTATTTTGCCCTGAA 59.458 36.000 0.00 0.00 0.00 3.02
1744 2055 5.083122 TCATTTCAACCTATTTTGCCCTGA 58.917 37.500 0.00 0.00 0.00 3.86
1745 2056 5.404466 TCATTTCAACCTATTTTGCCCTG 57.596 39.130 0.00 0.00 0.00 4.45
1746 2057 4.467438 CCTCATTTCAACCTATTTTGCCCT 59.533 41.667 0.00 0.00 0.00 5.19
1747 2058 4.383010 CCCTCATTTCAACCTATTTTGCCC 60.383 45.833 0.00 0.00 0.00 5.36
1748 2059 4.222810 ACCCTCATTTCAACCTATTTTGCC 59.777 41.667 0.00 0.00 0.00 4.52
1749 2060 5.405935 ACCCTCATTTCAACCTATTTTGC 57.594 39.130 0.00 0.00 0.00 3.68
1750 2061 7.492344 GCATAACCCTCATTTCAACCTATTTTG 59.508 37.037 0.00 0.00 0.00 2.44
1751 2062 7.180051 TGCATAACCCTCATTTCAACCTATTTT 59.820 33.333 0.00 0.00 0.00 1.82
1752 2063 6.667414 TGCATAACCCTCATTTCAACCTATTT 59.333 34.615 0.00 0.00 0.00 1.40
1753 2064 6.194235 TGCATAACCCTCATTTCAACCTATT 58.806 36.000 0.00 0.00 0.00 1.73
1754 2065 5.765510 TGCATAACCCTCATTTCAACCTAT 58.234 37.500 0.00 0.00 0.00 2.57
1755 2066 5.186256 TGCATAACCCTCATTTCAACCTA 57.814 39.130 0.00 0.00 0.00 3.08
1756 2067 4.046286 TGCATAACCCTCATTTCAACCT 57.954 40.909 0.00 0.00 0.00 3.50
1757 2068 4.799564 TTGCATAACCCTCATTTCAACC 57.200 40.909 0.00 0.00 0.00 3.77
1781 2092 9.927668 CAATATCATGTGTTAAAAAGTCCCTTT 57.072 29.630 0.00 0.00 34.94 3.11
1782 2093 9.088987 ACAATATCATGTGTTAAAAAGTCCCTT 57.911 29.630 0.00 0.00 30.82 3.95
1783 2094 8.650143 ACAATATCATGTGTTAAAAAGTCCCT 57.350 30.769 0.00 0.00 30.82 4.20
1784 2095 9.353999 GAACAATATCATGTGTTAAAAAGTCCC 57.646 33.333 0.00 0.00 38.07 4.46
1785 2096 9.906660 TGAACAATATCATGTGTTAAAAAGTCC 57.093 29.630 0.00 0.00 38.07 3.85
1791 2102 8.902806 GGAGGATGAACAATATCATGTGTTAAA 58.097 33.333 0.00 0.00 40.08 1.52
1792 2103 7.502226 GGGAGGATGAACAATATCATGTGTTAA 59.498 37.037 0.00 0.00 40.08 2.01
1793 2104 6.998074 GGGAGGATGAACAATATCATGTGTTA 59.002 38.462 0.00 0.00 40.08 2.41
1794 2105 5.829924 GGGAGGATGAACAATATCATGTGTT 59.170 40.000 0.00 0.00 40.08 3.32
1795 2106 5.103982 TGGGAGGATGAACAATATCATGTGT 60.104 40.000 0.00 0.00 40.08 3.72
1796 2107 5.379187 TGGGAGGATGAACAATATCATGTG 58.621 41.667 0.00 0.00 40.08 3.21
1797 2108 5.651612 TGGGAGGATGAACAATATCATGT 57.348 39.130 0.00 0.00 40.08 3.21
1798 2109 6.008331 ACATGGGAGGATGAACAATATCATG 58.992 40.000 0.00 0.00 40.08 3.07
1799 2110 6.183361 TGACATGGGAGGATGAACAATATCAT 60.183 38.462 0.00 0.00 42.62 2.45
1800 2111 5.132480 TGACATGGGAGGATGAACAATATCA 59.868 40.000 0.00 0.00 0.00 2.15
1801 2112 5.624159 TGACATGGGAGGATGAACAATATC 58.376 41.667 0.00 0.00 0.00 1.63
1802 2113 5.651612 TGACATGGGAGGATGAACAATAT 57.348 39.130 0.00 0.00 0.00 1.28
1803 2114 5.132480 TCATGACATGGGAGGATGAACAATA 59.868 40.000 15.37 0.00 0.00 1.90
1804 2115 4.079615 TCATGACATGGGAGGATGAACAAT 60.080 41.667 15.37 0.00 0.00 2.71
1805 2116 3.266513 TCATGACATGGGAGGATGAACAA 59.733 43.478 15.37 0.00 0.00 2.83
1806 2117 2.845586 TCATGACATGGGAGGATGAACA 59.154 45.455 15.37 0.00 0.00 3.18
1807 2118 3.565764 TCATGACATGGGAGGATGAAC 57.434 47.619 15.37 0.00 0.00 3.18
1808 2119 4.801521 ATTCATGACATGGGAGGATGAA 57.198 40.909 15.37 1.15 37.42 2.57
1809 2120 4.801521 AATTCATGACATGGGAGGATGA 57.198 40.909 15.37 0.00 0.00 2.92
1810 2121 4.647853 ACAAATTCATGACATGGGAGGATG 59.352 41.667 15.37 9.61 0.00 3.51
1811 2122 4.875389 ACAAATTCATGACATGGGAGGAT 58.125 39.130 15.37 0.55 0.00 3.24
1812 2123 4.018141 AGACAAATTCATGACATGGGAGGA 60.018 41.667 15.37 0.00 0.00 3.71
1813 2124 4.275810 AGACAAATTCATGACATGGGAGG 58.724 43.478 15.37 4.86 0.00 4.30
1814 2125 5.909621 AAGACAAATTCATGACATGGGAG 57.090 39.130 15.37 4.56 0.00 4.30
1815 2126 6.669125 AAAAGACAAATTCATGACATGGGA 57.331 33.333 15.37 5.35 0.00 4.37
1851 2162 9.959749 GTGTGAAAACTTATGAAATACCTTGAA 57.040 29.630 0.00 0.00 0.00 2.69
1852 2163 9.126151 TGTGTGAAAACTTATGAAATACCTTGA 57.874 29.630 0.00 0.00 0.00 3.02
1853 2164 9.912634 ATGTGTGAAAACTTATGAAATACCTTG 57.087 29.630 0.00 0.00 0.00 3.61
1867 2178 9.905713 AGGATGTTATGTATATGTGTGAAAACT 57.094 29.630 0.00 0.00 0.00 2.66
1870 2181 9.679661 ACAAGGATGTTATGTATATGTGTGAAA 57.320 29.630 0.00 0.00 35.91 2.69
1887 2198 5.590530 TTTGTGCAAGTAAACAAGGATGT 57.409 34.783 0.00 0.00 43.14 3.06
1888 2199 7.481275 AAATTTGTGCAAGTAAACAAGGATG 57.519 32.000 0.00 0.00 37.57 3.51
1889 2200 8.504812 AAAAATTTGTGCAAGTAAACAAGGAT 57.495 26.923 0.00 0.00 37.57 3.24
1890 2201 7.913674 AAAAATTTGTGCAAGTAAACAAGGA 57.086 28.000 0.00 0.00 37.57 3.36
1911 2222 7.291411 TCCCGTTCCAAAAATATCTGAAAAA 57.709 32.000 0.00 0.00 0.00 1.94
1912 2223 6.902771 TCCCGTTCCAAAAATATCTGAAAA 57.097 33.333 0.00 0.00 0.00 2.29
1913 2224 6.492087 ACTTCCCGTTCCAAAAATATCTGAAA 59.508 34.615 0.00 0.00 0.00 2.69
1914 2225 6.007703 ACTTCCCGTTCCAAAAATATCTGAA 58.992 36.000 0.00 0.00 0.00 3.02
1915 2226 5.566469 ACTTCCCGTTCCAAAAATATCTGA 58.434 37.500 0.00 0.00 0.00 3.27
1916 2227 5.897377 ACTTCCCGTTCCAAAAATATCTG 57.103 39.130 0.00 0.00 0.00 2.90
1917 2228 6.492087 TCAAACTTCCCGTTCCAAAAATATCT 59.508 34.615 0.00 0.00 33.90 1.98
1918 2229 6.683715 TCAAACTTCCCGTTCCAAAAATATC 58.316 36.000 0.00 0.00 33.90 1.63
1919 2230 6.658188 TCAAACTTCCCGTTCCAAAAATAT 57.342 33.333 0.00 0.00 33.90 1.28
1920 2231 6.466885 TTCAAACTTCCCGTTCCAAAAATA 57.533 33.333 0.00 0.00 33.90 1.40
1921 2232 5.346181 TTCAAACTTCCCGTTCCAAAAAT 57.654 34.783 0.00 0.00 33.90 1.82
1922 2233 4.803098 TTCAAACTTCCCGTTCCAAAAA 57.197 36.364 0.00 0.00 33.90 1.94
1923 2234 5.346181 AATTCAAACTTCCCGTTCCAAAA 57.654 34.783 0.00 0.00 33.90 2.44
1924 2235 5.346181 AAATTCAAACTTCCCGTTCCAAA 57.654 34.783 0.00 0.00 33.90 3.28
1925 2236 5.105310 TCAAAATTCAAACTTCCCGTTCCAA 60.105 36.000 0.00 0.00 33.90 3.53
1926 2237 4.402793 TCAAAATTCAAACTTCCCGTTCCA 59.597 37.500 0.00 0.00 33.90 3.53
1927 2238 4.939271 TCAAAATTCAAACTTCCCGTTCC 58.061 39.130 0.00 0.00 33.90 3.62
1928 2239 7.477144 AAATCAAAATTCAAACTTCCCGTTC 57.523 32.000 0.00 0.00 33.90 3.95
1929 2240 7.857734 AAAATCAAAATTCAAACTTCCCGTT 57.142 28.000 0.00 0.00 37.47 4.44
1930 2241 7.857734 AAAAATCAAAATTCAAACTTCCCGT 57.142 28.000 0.00 0.00 0.00 5.28
1954 2265 7.102346 TCACTGGAGCTTGAAATTTTGAAAAA 58.898 30.769 0.00 0.00 0.00 1.94
1955 2266 6.638610 TCACTGGAGCTTGAAATTTTGAAAA 58.361 32.000 0.00 0.00 0.00 2.29
1956 2267 6.219417 TCACTGGAGCTTGAAATTTTGAAA 57.781 33.333 0.00 0.00 0.00 2.69
1957 2268 5.835257 CTCACTGGAGCTTGAAATTTTGAA 58.165 37.500 0.00 0.00 33.67 2.69
1958 2269 5.443185 CTCACTGGAGCTTGAAATTTTGA 57.557 39.130 0.00 0.00 33.67 2.69
1971 2282 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
1972 2283 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
1973 2284 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
1974 2285 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
1975 2286 0.468226 TTTTGGTGACCGAGCTCACT 59.532 50.000 15.40 0.00 40.50 3.41
1976 2287 1.264288 CTTTTTGGTGACCGAGCTCAC 59.736 52.381 15.40 4.81 40.02 3.51
1977 2288 1.593196 CTTTTTGGTGACCGAGCTCA 58.407 50.000 15.40 0.00 0.00 4.26
1978 2289 0.875059 CCTTTTTGGTGACCGAGCTC 59.125 55.000 2.73 2.73 0.00 4.09
1979 2290 1.172812 GCCTTTTTGGTGACCGAGCT 61.173 55.000 0.00 0.00 38.35 4.09
1980 2291 1.285950 GCCTTTTTGGTGACCGAGC 59.714 57.895 0.00 0.00 38.35 5.03
1988 2299 0.661020 CACGAGAACGCCTTTTTGGT 59.339 50.000 0.00 0.00 43.96 3.67
1989 2300 0.941542 TCACGAGAACGCCTTTTTGG 59.058 50.000 0.00 0.00 43.96 3.28
1990 2301 2.372350 GTTCACGAGAACGCCTTTTTG 58.628 47.619 9.96 0.00 44.11 2.44
1991 2302 2.750301 GTTCACGAGAACGCCTTTTT 57.250 45.000 9.96 0.00 44.11 1.94
2000 2311 3.308053 CGTACTATCTCCGTTCACGAGAA 59.692 47.826 0.00 0.00 43.02 2.87
2001 2312 2.862536 CGTACTATCTCCGTTCACGAGA 59.137 50.000 0.00 2.76 43.02 4.04
2002 2313 2.606725 ACGTACTATCTCCGTTCACGAG 59.393 50.000 0.00 0.00 43.02 4.18
2003 2314 2.621338 ACGTACTATCTCCGTTCACGA 58.379 47.619 0.00 0.00 43.02 4.35
2004 2315 3.096461 CAACGTACTATCTCCGTTCACG 58.904 50.000 0.00 0.00 42.34 4.35
2005 2316 4.088823 ACAACGTACTATCTCCGTTCAC 57.911 45.455 0.00 0.00 42.34 3.18
2006 2317 5.878332 TTACAACGTACTATCTCCGTTCA 57.122 39.130 0.00 0.00 42.34 3.18
2007 2318 5.618798 CGATTACAACGTACTATCTCCGTTC 59.381 44.000 0.00 0.00 42.34 3.95
2008 2319 5.065218 ACGATTACAACGTACTATCTCCGTT 59.935 40.000 0.00 0.00 44.81 4.44
2009 2320 4.572389 ACGATTACAACGTACTATCTCCGT 59.428 41.667 0.00 0.00 42.17 4.69
2010 2321 5.088141 ACGATTACAACGTACTATCTCCG 57.912 43.478 0.00 0.00 42.17 4.63
2011 2322 7.579726 ACATACGATTACAACGTACTATCTCC 58.420 38.462 0.00 0.00 46.21 3.71
2012 2323 9.443283 AAACATACGATTACAACGTACTATCTC 57.557 33.333 0.00 0.00 46.21 2.75
2017 2328 9.793252 AAGATAAACATACGATTACAACGTACT 57.207 29.630 0.00 0.00 46.21 2.73
2018 2329 9.825391 CAAGATAAACATACGATTACAACGTAC 57.175 33.333 0.00 0.00 46.21 3.67
2020 2331 8.692110 TCAAGATAAACATACGATTACAACGT 57.308 30.769 0.00 0.00 45.75 3.99
2021 2332 9.016623 TCTCAAGATAAACATACGATTACAACG 57.983 33.333 0.00 0.00 0.00 4.10
2040 2351 9.119418 TGTCATGTTCAGTTTATTTTCTCAAGA 57.881 29.630 0.00 0.00 0.00 3.02
2041 2352 9.390795 CTGTCATGTTCAGTTTATTTTCTCAAG 57.609 33.333 10.76 0.00 0.00 3.02
2042 2353 8.902806 ACTGTCATGTTCAGTTTATTTTCTCAA 58.097 29.630 16.22 0.00 42.50 3.02
2043 2354 8.450578 ACTGTCATGTTCAGTTTATTTTCTCA 57.549 30.769 16.22 0.00 42.50 3.27
2044 2355 8.778358 AGACTGTCATGTTCAGTTTATTTTCTC 58.222 33.333 20.46 9.69 44.68 2.87
2045 2356 8.682936 AGACTGTCATGTTCAGTTTATTTTCT 57.317 30.769 20.46 12.12 44.68 2.52
2046 2357 9.813080 GTAGACTGTCATGTTCAGTTTATTTTC 57.187 33.333 20.46 10.67 44.68 2.29
2047 2358 8.495949 CGTAGACTGTCATGTTCAGTTTATTTT 58.504 33.333 20.46 9.97 44.68 1.82
2048 2359 7.656137 ACGTAGACTGTCATGTTCAGTTTATTT 59.344 33.333 20.46 11.43 44.68 1.40
2049 2360 7.152645 ACGTAGACTGTCATGTTCAGTTTATT 58.847 34.615 20.46 11.66 44.68 1.40
2050 2361 6.688578 ACGTAGACTGTCATGTTCAGTTTAT 58.311 36.000 20.46 14.53 44.68 1.40
2051 2362 6.080648 ACGTAGACTGTCATGTTCAGTTTA 57.919 37.500 20.46 17.39 44.68 2.01
2052 2363 4.945246 ACGTAGACTGTCATGTTCAGTTT 58.055 39.130 20.46 18.11 44.68 2.66
2053 2364 4.547532 GACGTAGACTGTCATGTTCAGTT 58.452 43.478 20.46 14.82 44.68 3.16
2054 2365 3.057456 GGACGTAGACTGTCATGTTCAGT 60.057 47.826 19.93 19.93 46.86 3.41
2055 2366 3.057526 TGGACGTAGACTGTCATGTTCAG 60.058 47.826 10.88 15.23 38.10 3.02
2056 2367 2.888414 TGGACGTAGACTGTCATGTTCA 59.112 45.455 10.88 9.44 38.10 3.18
2057 2368 3.057456 ACTGGACGTAGACTGTCATGTTC 60.057 47.826 10.88 7.15 38.10 3.18
2058 2369 2.891580 ACTGGACGTAGACTGTCATGTT 59.108 45.455 10.88 0.00 38.10 2.71
2059 2370 2.229062 CACTGGACGTAGACTGTCATGT 59.771 50.000 10.88 7.56 38.10 3.21
2060 2371 2.868662 CACTGGACGTAGACTGTCATG 58.131 52.381 10.88 4.51 38.10 3.07
2061 2372 1.202582 GCACTGGACGTAGACTGTCAT 59.797 52.381 10.88 0.00 38.10 3.06
2062 2373 0.596577 GCACTGGACGTAGACTGTCA 59.403 55.000 10.88 0.00 38.10 3.58
2063 2374 0.454620 CGCACTGGACGTAGACTGTC 60.455 60.000 0.00 0.00 35.60 3.51
2064 2375 1.579932 CGCACTGGACGTAGACTGT 59.420 57.895 0.00 0.00 0.00 3.55
2065 2376 1.801913 GCGCACTGGACGTAGACTG 60.802 63.158 0.30 0.00 0.00 3.51
2066 2377 1.524863 AAGCGCACTGGACGTAGACT 61.525 55.000 11.47 0.00 0.00 3.24
2067 2378 0.169672 TAAGCGCACTGGACGTAGAC 59.830 55.000 11.47 0.00 0.00 2.59
2068 2379 0.169672 GTAAGCGCACTGGACGTAGA 59.830 55.000 11.47 0.00 0.00 2.59
2069 2380 1.132199 CGTAAGCGCACTGGACGTAG 61.132 60.000 11.47 0.00 33.52 3.51
2070 2381 1.154169 CGTAAGCGCACTGGACGTA 60.154 57.895 11.47 0.00 33.52 3.57
2071 2382 2.430244 CGTAAGCGCACTGGACGT 60.430 61.111 11.47 0.00 33.52 4.34
2072 2383 2.126618 TCGTAAGCGCACTGGACG 60.127 61.111 11.47 11.57 37.39 4.79
2073 2384 0.798771 CTCTCGTAAGCGCACTGGAC 60.799 60.000 11.47 0.00 38.14 4.02
2074 2385 1.241990 ACTCTCGTAAGCGCACTGGA 61.242 55.000 11.47 0.00 38.14 3.86
2075 2386 0.450583 TACTCTCGTAAGCGCACTGG 59.549 55.000 11.47 0.00 38.14 4.00
2076 2387 1.135774 TGTACTCTCGTAAGCGCACTG 60.136 52.381 11.47 0.00 38.14 3.66
2077 2388 1.135746 GTGTACTCTCGTAAGCGCACT 60.136 52.381 11.47 0.00 38.14 4.40
2078 2389 1.257539 GTGTACTCTCGTAAGCGCAC 58.742 55.000 11.47 0.00 38.14 5.34
2079 2390 0.876399 TGTGTACTCTCGTAAGCGCA 59.124 50.000 11.47 0.00 38.14 6.09
2080 2391 1.135746 AGTGTGTACTCTCGTAAGCGC 60.136 52.381 0.00 0.00 32.66 5.92
2081 2392 2.896243 AGTGTGTACTCTCGTAAGCG 57.104 50.000 0.00 0.00 33.55 4.68
2099 2410 4.552166 AGTCAAATTTTGGACACGTGAG 57.448 40.909 25.01 0.00 36.50 3.51
2100 2411 4.974368 AAGTCAAATTTTGGACACGTGA 57.026 36.364 25.01 0.00 36.50 4.35
2101 2412 6.020995 GTGTTAAGTCAAATTTTGGACACGTG 60.021 38.462 15.48 15.48 36.50 4.49
2102 2413 6.031471 GTGTTAAGTCAAATTTTGGACACGT 58.969 36.000 9.18 2.06 36.50 4.49
2103 2414 6.030849 TGTGTTAAGTCAAATTTTGGACACG 58.969 36.000 9.18 0.00 38.08 4.49
2104 2415 9.522804 TTATGTGTTAAGTCAAATTTTGGACAC 57.477 29.630 9.18 14.24 36.50 3.67
2105 2416 9.522804 GTTATGTGTTAAGTCAAATTTTGGACA 57.477 29.630 9.18 4.76 36.50 4.02
2106 2417 8.687301 CGTTATGTGTTAAGTCAAATTTTGGAC 58.313 33.333 9.18 6.48 0.00 4.02
2107 2418 8.407064 ACGTTATGTGTTAAGTCAAATTTTGGA 58.593 29.630 9.18 0.00 0.00 3.53
2108 2419 8.476142 CACGTTATGTGTTAAGTCAAATTTTGG 58.524 33.333 9.18 0.00 43.88 3.28
2144 2455 6.422701 CCACACGAGTGTCTAGTATTGAAAAA 59.577 38.462 12.07 0.00 44.39 1.94
2145 2456 5.924254 CCACACGAGTGTCTAGTATTGAAAA 59.076 40.000 12.07 0.00 44.39 2.29
2146 2457 5.466819 CCACACGAGTGTCTAGTATTGAAA 58.533 41.667 12.07 0.00 44.39 2.69
2147 2458 4.617530 GCCACACGAGTGTCTAGTATTGAA 60.618 45.833 12.07 0.00 44.39 2.69
2148 2459 3.119602 GCCACACGAGTGTCTAGTATTGA 60.120 47.826 12.07 0.00 44.39 2.57
2149 2460 3.179830 GCCACACGAGTGTCTAGTATTG 58.820 50.000 12.07 0.00 44.39 1.90
2150 2461 2.165845 GGCCACACGAGTGTCTAGTATT 59.834 50.000 12.07 0.00 44.39 1.89
2151 2462 1.749634 GGCCACACGAGTGTCTAGTAT 59.250 52.381 12.07 0.00 44.39 2.12
2152 2463 1.171308 GGCCACACGAGTGTCTAGTA 58.829 55.000 12.07 0.00 44.39 1.82
2153 2464 1.863662 CGGCCACACGAGTGTCTAGT 61.864 60.000 12.07 0.00 44.39 2.57
2154 2465 1.154016 CGGCCACACGAGTGTCTAG 60.154 63.158 12.07 0.05 44.39 2.43
2155 2466 1.174078 TTCGGCCACACGAGTGTCTA 61.174 55.000 12.07 0.00 44.47 2.59
2156 2467 2.023414 TTTCGGCCACACGAGTGTCT 62.023 55.000 12.07 0.00 44.47 3.41
2157 2468 0.949105 ATTTCGGCCACACGAGTGTC 60.949 55.000 12.07 0.00 44.47 3.67
2158 2469 0.534203 AATTTCGGCCACACGAGTGT 60.534 50.000 12.07 2.62 44.47 3.55
2159 2470 0.591170 AAATTTCGGCCACACGAGTG 59.409 50.000 2.24 5.96 44.47 3.51
2160 2471 0.591170 CAAATTTCGGCCACACGAGT 59.409 50.000 2.24 0.00 44.47 4.18
2161 2472 0.871722 TCAAATTTCGGCCACACGAG 59.128 50.000 2.24 0.00 44.47 4.18
2162 2473 0.589223 GTCAAATTTCGGCCACACGA 59.411 50.000 2.24 0.00 41.76 4.35
2163 2474 0.591170 AGTCAAATTTCGGCCACACG 59.409 50.000 2.24 0.00 0.00 4.49
2164 2475 2.793278 AAGTCAAATTTCGGCCACAC 57.207 45.000 2.24 0.00 0.00 3.82
2165 2476 3.632604 TGTTAAGTCAAATTTCGGCCACA 59.367 39.130 2.24 0.00 0.00 4.17
2166 2477 3.978855 GTGTTAAGTCAAATTTCGGCCAC 59.021 43.478 2.24 0.00 0.00 5.01
2167 2478 3.304123 CGTGTTAAGTCAAATTTCGGCCA 60.304 43.478 2.24 0.00 0.00 5.36
2168 2479 3.231160 CGTGTTAAGTCAAATTTCGGCC 58.769 45.455 0.00 0.00 0.00 6.13
2169 2480 3.662186 CACGTGTTAAGTCAAATTTCGGC 59.338 43.478 7.58 0.00 0.00 5.54
2170 2481 4.901881 GTCACGTGTTAAGTCAAATTTCGG 59.098 41.667 16.51 0.00 0.00 4.30
2171 2482 5.734311 AGTCACGTGTTAAGTCAAATTTCG 58.266 37.500 16.51 0.00 0.00 3.46
2172 2483 8.940924 GTTAAGTCACGTGTTAAGTCAAATTTC 58.059 33.333 16.51 0.00 0.00 2.17
2173 2484 8.452534 TGTTAAGTCACGTGTTAAGTCAAATTT 58.547 29.630 16.51 0.00 0.00 1.82
2174 2485 7.906527 GTGTTAAGTCACGTGTTAAGTCAAATT 59.093 33.333 16.51 1.45 0.00 1.82
2175 2486 7.064847 TGTGTTAAGTCACGTGTTAAGTCAAAT 59.935 33.333 16.51 0.00 40.74 2.32
2176 2487 6.368243 TGTGTTAAGTCACGTGTTAAGTCAAA 59.632 34.615 16.51 2.40 40.74 2.69
2177 2488 5.868258 TGTGTTAAGTCACGTGTTAAGTCAA 59.132 36.000 16.51 0.00 40.74 3.18
2178 2489 5.409211 TGTGTTAAGTCACGTGTTAAGTCA 58.591 37.500 16.51 11.89 40.74 3.41
2179 2490 5.954434 TGTGTTAAGTCACGTGTTAAGTC 57.046 39.130 16.51 9.80 40.74 3.01
2180 2491 6.281848 CATGTGTTAAGTCACGTGTTAAGT 57.718 37.500 16.51 0.00 45.04 2.24
2187 2498 3.088194 ACGTCATGTGTTAAGTCACGT 57.912 42.857 0.00 0.00 40.74 4.49
2188 2499 4.224433 ACTACGTCATGTGTTAAGTCACG 58.776 43.478 0.00 0.00 40.74 4.35
2189 2500 6.144854 TGTACTACGTCATGTGTTAAGTCAC 58.855 40.000 0.00 0.00 38.63 3.67
2190 2501 6.316440 TGTACTACGTCATGTGTTAAGTCA 57.684 37.500 0.00 0.00 0.00 3.41
2191 2502 7.327761 ACAATGTACTACGTCATGTGTTAAGTC 59.672 37.037 0.00 0.00 0.00 3.01
2192 2503 7.149973 ACAATGTACTACGTCATGTGTTAAGT 58.850 34.615 0.00 0.00 0.00 2.24
2193 2504 7.576750 ACAATGTACTACGTCATGTGTTAAG 57.423 36.000 0.00 0.00 0.00 1.85
2194 2505 9.642327 ATTACAATGTACTACGTCATGTGTTAA 57.358 29.630 0.00 0.00 0.00 2.01
2195 2506 9.642327 AATTACAATGTACTACGTCATGTGTTA 57.358 29.630 0.00 0.00 0.00 2.41
2196 2507 8.440059 CAATTACAATGTACTACGTCATGTGTT 58.560 33.333 0.00 0.00 0.00 3.32
2197 2508 7.815549 TCAATTACAATGTACTACGTCATGTGT 59.184 33.333 0.00 0.26 0.00 3.72
2198 2509 8.180317 TCAATTACAATGTACTACGTCATGTG 57.820 34.615 0.00 0.00 0.00 3.21
2199 2510 8.653338 GTTCAATTACAATGTACTACGTCATGT 58.347 33.333 0.00 0.00 0.00 3.21
2200 2511 7.839358 CGTTCAATTACAATGTACTACGTCATG 59.161 37.037 0.00 0.00 0.00 3.07
2201 2512 7.543172 ACGTTCAATTACAATGTACTACGTCAT 59.457 33.333 0.00 0.00 33.85 3.06
2202 2513 6.862608 ACGTTCAATTACAATGTACTACGTCA 59.137 34.615 0.00 0.00 33.85 4.35
2203 2514 7.269435 ACGTTCAATTACAATGTACTACGTC 57.731 36.000 0.00 0.00 33.85 4.34
2204 2515 7.642071 AACGTTCAATTACAATGTACTACGT 57.358 32.000 0.00 4.94 39.80 3.57
2205 2516 8.922738 AAAACGTTCAATTACAATGTACTACG 57.077 30.769 0.00 0.00 0.00 3.51
2208 2519 9.228636 GTGAAAAACGTTCAATTACAATGTACT 57.771 29.630 0.00 0.00 0.00 2.73
2209 2520 9.011407 TGTGAAAAACGTTCAATTACAATGTAC 57.989 29.630 0.00 0.00 0.00 2.90
2210 2521 9.737427 ATGTGAAAAACGTTCAATTACAATGTA 57.263 25.926 0.00 0.00 0.00 2.29
2211 2522 8.538856 CATGTGAAAAACGTTCAATTACAATGT 58.461 29.630 0.00 0.00 0.00 2.71
2212 2523 7.526850 GCATGTGAAAAACGTTCAATTACAATG 59.473 33.333 0.00 1.23 0.00 2.82
2213 2524 7.223582 TGCATGTGAAAAACGTTCAATTACAAT 59.776 29.630 0.00 0.00 0.00 2.71
2214 2525 6.531594 TGCATGTGAAAAACGTTCAATTACAA 59.468 30.769 0.00 0.00 0.00 2.41
2215 2526 6.036470 TGCATGTGAAAAACGTTCAATTACA 58.964 32.000 0.00 4.71 0.00 2.41
2216 2527 6.503616 TGCATGTGAAAAACGTTCAATTAC 57.496 33.333 0.00 0.00 0.00 1.89
2217 2528 6.199908 CCTTGCATGTGAAAAACGTTCAATTA 59.800 34.615 0.00 0.00 0.00 1.40
2218 2529 5.006552 CCTTGCATGTGAAAAACGTTCAATT 59.993 36.000 0.00 0.00 0.00 2.32
2219 2530 4.507388 CCTTGCATGTGAAAAACGTTCAAT 59.493 37.500 0.00 0.00 0.00 2.57
2220 2531 3.862267 CCTTGCATGTGAAAAACGTTCAA 59.138 39.130 0.00 0.00 0.00 2.69
2221 2532 3.443037 CCTTGCATGTGAAAAACGTTCA 58.557 40.909 0.00 0.00 0.00 3.18
2222 2533 2.794350 CCCTTGCATGTGAAAAACGTTC 59.206 45.455 0.00 0.00 0.00 3.95
2223 2534 2.820330 CCCTTGCATGTGAAAAACGTT 58.180 42.857 0.00 0.00 0.00 3.99
2224 2535 1.537990 GCCCTTGCATGTGAAAAACGT 60.538 47.619 0.00 0.00 37.47 3.99
2225 2536 1.139163 GCCCTTGCATGTGAAAAACG 58.861 50.000 0.00 0.00 37.47 3.60
2226 2537 2.531522 AGCCCTTGCATGTGAAAAAC 57.468 45.000 0.00 0.00 41.13 2.43
2227 2538 4.679373 TTTAGCCCTTGCATGTGAAAAA 57.321 36.364 0.00 0.00 41.13 1.94
2228 2539 4.888326 ATTTAGCCCTTGCATGTGAAAA 57.112 36.364 0.00 0.00 41.13 2.29
2229 2540 4.888326 AATTTAGCCCTTGCATGTGAAA 57.112 36.364 0.00 0.00 41.13 2.69
2230 2541 4.888326 AAATTTAGCCCTTGCATGTGAA 57.112 36.364 0.00 0.00 41.13 3.18
2231 2542 5.714333 TCTTAAATTTAGCCCTTGCATGTGA 59.286 36.000 0.00 0.00 41.13 3.58
2232 2543 5.964758 TCTTAAATTTAGCCCTTGCATGTG 58.035 37.500 0.00 0.00 41.13 3.21
2233 2544 6.796785 ATCTTAAATTTAGCCCTTGCATGT 57.203 33.333 0.00 0.00 41.13 3.21
2234 2545 9.598517 TTTTATCTTAAATTTAGCCCTTGCATG 57.401 29.630 0.00 0.00 41.13 4.06
2236 2547 9.430623 GTTTTTATCTTAAATTTAGCCCTTGCA 57.569 29.630 0.00 0.00 41.13 4.08
2237 2548 9.653287 AGTTTTTATCTTAAATTTAGCCCTTGC 57.347 29.630 0.00 0.00 37.95 4.01
2261 2572 9.847706 CGTAGATTAGATCTGCAAATGTATAGT 57.152 33.333 5.18 0.00 41.39 2.12
2262 2573 9.847706 ACGTAGATTAGATCTGCAAATGTATAG 57.152 33.333 5.18 2.58 41.39 1.31
2264 2575 9.847706 CTACGTAGATTAGATCTGCAAATGTAT 57.152 33.333 17.95 0.00 41.39 2.29
2265 2576 8.847196 ACTACGTAGATTAGATCTGCAAATGTA 58.153 33.333 28.74 0.00 41.39 2.29
2266 2577 7.717568 ACTACGTAGATTAGATCTGCAAATGT 58.282 34.615 28.74 0.00 41.39 2.71
2267 2578 9.847706 ATACTACGTAGATTAGATCTGCAAATG 57.152 33.333 28.74 0.00 41.39 2.32
2268 2579 9.847706 CATACTACGTAGATTAGATCTGCAAAT 57.152 33.333 28.74 3.17 41.39 2.32
2269 2580 9.063615 TCATACTACGTAGATTAGATCTGCAAA 57.936 33.333 28.74 0.00 41.39 3.68
2270 2581 8.617290 TCATACTACGTAGATTAGATCTGCAA 57.383 34.615 28.74 0.00 41.39 4.08
2271 2582 8.617290 TTCATACTACGTAGATTAGATCTGCA 57.383 34.615 28.74 3.61 41.39 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.