>input_sequence_84583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGAGGCTGTTCTTCAGGCTCTTCGCCGTCTTAGCCATCATGGCTGCTCT
GTCGGCTACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCCACCTTCGCCGACGCCGTCCG
CGCTCAGGGGCCGTGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGACCATTG
CGTTCACCGCCTCCGCGACCATCACCAAATCACCAGGGAAGCGTCGGCTCTACAAACTTTCCTCCACCACCATTACGGTG
CCACTAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr1B_1_TraesCS1B01G201200
GGAACAGTGGGAGAGGGGAGGGGGAGGGAGGAGTGGAGAGAGGAGCCATGAAGTCTTGCCCTCTGTGTCACAAGCTTTGA
TGTTTTGGAAGCA-AGAAATGAAGTTATCCTCACCCACAGGTGACACCATGTCCGCAGACACGGGCGGCTCGTGGGCATT
GACCATTGATGCACAGCTCATCCGCTGCACTCGTCACGGGAATTCAGTTTGCTGCATA------------AAGGTGGGAG
CATTTTCGTTAGCCAGCATGGCAAGATTCCTCTCCTGCTTGCTGGCT-AGGCTCTCCTGATCCTACTAGCAACGTCGGTC
ACTACGAAGGCCATAGAGGAAGGCCGAGCTCACTCCTCCTACACGCCACCGGCGCCAGCTCCGCCGTCTTCTGGCCAACG
TGGCCAAAGCCGCCAAACCCCAACAGCGCCACTGGGACCTCTTGGTCTGAGATCACCGCTCGGAGCTCCGCCCCCACCAG
AATCAGCGCCGCACCGTCGGTACCGGAGGGCGGCGCCACTCGAACCGCCAC------CTCCTCCACCACCACTCTCGCCA
TCGTCAGCCCACCAC--------TCTTAATTAGCAGTAGA--CACGTGGTTGTAGCCCTCCCACTTCCCCGCATTATCAA
GATCGCCACAGATCTGCACTTTGGACTTTGGAGTTTACTGTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACAATATG
AATTTTTTAGTTCCCTTTGATCCGTGAGAATTTTTGCCAGCACGTGTTGATAT----CGAACTGTTCCATGTGAATTCTT
TGACACTTATCTTTCTCGAAGTGTTGTCAGCAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAA
ACAAGCCATGTGCGCCCTCTAATAGCAG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GCCATGCGCCCCAAGA
TTTCCCAAATAAATGCAAACCTGTCAACCACCCCAGATTTTTACTACTATATGTTCAGATCATCACTGTGAGAGCAGCAG
TGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAGGCTCTTCGCCGTCTTAGCCATCATGGCTGCTCT
GTCGGCTACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCCACCTTCGCCGACGCCGTCCG
CGCTCAGGGGCCGTGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGACCATTG
CGTTCACCGCCTCCGCGACCATCACCAAATCACCAGGGAAGCGTCGGCTCTACAAACTTTCCTCCACCACCATTACGGTG
CCACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACGCTTCCGTGT
AACGCTTGTGTAAACACCGTGTTGTGAAACATGCTGAGATTCATGCTTTACCTTTTCTACTATCTTCACAAGTACTCCCT
CCGTTCATTACTATTAGATGTTCTATTTTTTTTAAATGGGATATATGTAGACGCGTTTTATTGTGTTTGTTCACTCATTT
CTGTCCATATCTAGTCTATATTGAACGATCCAAAACGTCTTATAACAGTGATAAGAGTGAAAGGAGTGAAAATTGCTTTT
GGAGCTCGGCCTGCATGGAGGCCTCCAAATTCAAATTTCAAAATTCATGAAAATTCATTTTTTGATGTTTCAAAAAATTC
TGAAACAAAAAATATAGATATGCATGAAGGCATAACACACATGTGTGTATATTTTCAGGGCAAAATAGGTTGAAATGAGG
GTTATGCAAAAAAAGGGACTTTTTAACACATGATATTGTTCATCCTCCCATGTCATGAATTTGTCTTTTTTTTCTAGTAC
TTTCAAGGTATTTCATAAGTTTTCACACATATACATAACATCCTTGTTTACTTGCACAAATTTTTTCAGATATTTTTGGA
ACGGGAAGTTTGAATTTTGATTTTTTTTTCAAAATTTCAAGCTCCAGTGAGCTCGGTCACCAAAAAGGCGTTCTCGTGAA
CGGAGATAGTACGTTGTAATCGTATGTTTATCTTGAGAAAATAAACTGAACATGACAGTCTACGTCCAGTGCGCTTACGA
GAGTACACACTCACGTGTCCAAAATTTGACTTAACACATAACGTGCATTGTAATTTTTTCAATACTAGACACTCGTGTGG
CCGAAATTTGACTTAACACGTGACTTAACACATGACGTAGTACATTGTAATTGAACGTTTTTCACATGCAAGGGCTAAAT
TTAAGATAAAAACTATACATTTGCAGATCTAATCTACGTAGTATGAA
>chr1D_69
--------------------------------------------------------------------CACAGGCTCTGG
TGTTTTGGAAGGCGAGAAATGAAGTTATCGTCACCCACAGGTGACACCGTGTCGGCAGACACGGGCGGCTCGTGGACATT
GACCATTGATGCACAGCTCATCCGCTGCACTCGTCACGGGAAATCAGTTTGCTGCATAAATTTAGGCCACAAGGTGGGAG
CATTTTCGTTAGCCAGCATGGCAAGATTCCTCTCCTGCTTACTGGCTCAGGCTCTCCTGATCCTACTAGCAATGTCGATC
ACTTCGAAGGCCACAGAGGAAGGCTGAGCTCACTCCTGCTACACGCCACCGGCGCCAGCTCCGGCGTCTTCTGGCCAACG
TGGCCAAAGCCGCCAAACCCCAACAGTGCCACTGGGACCTCTTGGTCTGC-ATCACCGCTCGGAGCTCCGCCCCCGCCAG
AATCAGCGCCGCACCGTCATCACCGGAGGGCGGCGCCACTCGAACCGCCAC------CTCCTCCACCACCACTCTCGCCA
CCGCCAGCCCACAAC--------TCTTAAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr1A_69
--------------------------------------------------------------------CACAGGCTTTGC
TGTTTTGGAAGGCGAGAAATGAAGTTATCCTCACCCACAGGTGACACCATGTCAGCAGACACGGGCGGCTCGTGGACATT
GACCATTGATGCACAGCTCATCCGCTGCACTCGTCACGGGAATTCAGTTTGCTGCATAAATTCAGGCCACAAGGTGGGAG
CATTTTCGTTCGCCAACATGGCAAGATTCCTCTCGTGCTTGCTGGCTCAGGCTCTCCTGATCCTACTAGCAACGTCGGTC
ACTTCAAAGGCCATAGAGGAAGGCCGAGCTCACTCCTGCTACACGCCACCGGCGCCAGCTCCGGCGTCTTCTGGCCAACG
TGGCCAAAGCCGCCAAACCCCAACAGCGCCACTGGGACCTCTTGGTCTGAGATCACCGCTCGGAGCTCCGCCCCCGCCAG
AATCAGCGCCGCACCGTCACTACCGGAGGGCGGCGCCACTCGAACCACCACCTCCGCCTCCGCCACCACCACTCTCCCCG
TCGCCAGCCCACCACCGCAACGATCTTAATTAGCAGTAGTATCACATGGGTGCAGCACTCCCACTTCCCCGCATTACCAG
GATCACCACAGATCTGCAG-------TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACGATATG
AATTTTTCAGTTCCCTTTGATTCGTGAGAAATTTTCCCAGCACGTGTTGATATATATCGAACTGTTCCATGTGAATTCTT
TGACACTTATCTCTCTCCAAGTGTTGTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAA
ACAAGCCATGTGCGCCATCTAATAAGACTGATCGTAACGAGAGTATCATAAACGGTATCATGCATCCTAACTAGATTTTT
TAGATAATGTGACATACAATTAAATGAGGAAAGAAAGAGTGTAGTATCATATCATGATACCGTATCATATTAAATATTGT
ATTACTTTGTGTCATGCATAACAATTAATAAGACAACCTAAGATACAACTTATGATACTATACATTACGAATGTAGTATC
ATATACTAATATCATATGCATGATACTAGTATATAATATTCCCCATTACAACCAGCTTAACAAAGCCACGCGCCCCAAGA
TTTCCCAAATAAATGCAAATTCGTCAACCACCCTAGGTTTTCAG---TATAAGTTCAGATCATCTCTGTAAGAGTAGCAA
TGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGCTCT
GTCGGCCACAAATGTGCCGTCGCCAGTTGGTGTGTGGGCGAGGACGCCGGGGAGAGCGCCACCTTCGCCAACGCCGTCCG
CGCTCAGGGGTCGCGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAAATGGGTAGAGTGCGGCCATTG
TGTTCACCGCCTCCGCGACCATCACCAAATCACCAGCGAAGCGTCGGCTCTACGCACTTTCCTCCACCACCATTACGGTG
CCACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACACTTCTGTGT
AACGCTTGTGTAAACATCGTGTTGTGAAACATGCTGAGATTCATGTTTTACCTTTCCTATTATCTTCACAAATACTCCCT
CCATTCATTGTTATAAGATATTCTAGTTTTCTTAAATGACGTGTATATAGACATGTTTTAGTGTATTAGTTTACTCATTT
ATGTCTGTATCTAGTCTATAATAAAATATTCAAAAGGTGTTATAATAGTGATAAGAATGAACGGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr1D_553
CACTCTAC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TAGTTACCAGTAGTATCACGTGGTTGTAGCCCTCCCACTTCCCCGCATTACCAG
GATCACCACAGATCTGCAG-------TTTGGAGTTTACTTTCAGTCTTAGCCAATCTTCAATCAGCAATGTGACGATATG
AATTTTTTAGTTCCCTTTGATCCGTGAGAATTTTACCCAGCACGTGTTGATATATATCGAACTGTTCCATGTGAATTCTT
TGACACTTATCTTTCTCGAAGTGTTGTCAGGAAGAAATCTTTGGATGTCTACAGAGCTCAGTCGCTGGTTGCATTGACAA
ACAAGCCATGTGCGCCATCTAATAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CAAAGCCACGCGCCCCAAGA
TTTCCCAAATAAATGCAAATCCGTCAACCACCCCAGGTTTTCAG---TATAAGTTCAGATCATCTCTGTAAGAGCAGCAA
TGTTCATTTCCTTTTTCTCTTGCGTCCAAGATGAGGCTGTTCTTCAAGCTCTTCGCCGTCTTGGCCATCATGGCTGCTCT
GTCGGCTACAAATGTGCTGTCGCCAGTTGGTGTGTGGGCGAGGACGCCAGGGAGAGCGCCACCTTCGCCGACGCCGTCCG
CGCTCAGGGGCCGCGTGAAGCCGATTAATCCCGCGCCACAGCCTCCGCCACCAGCGGAGATGGGTAGAGTGCGGCCATTG
CGTTCACCGCCTCCGCGACCATCACCAAATCACCAGCGAAGCGTCGGCTCTACGCACTTTCCTCCACCACCATTAAGGTG
CTACTAGATCTATGTTTCGACTTAATCTTGATCTGTAAAGATCATGTTATTGGTTCTCTTTACCAAGAACGCTTCTGTGT
AACGCTTGTGTAAACACCGTGTTGTGAAACATGCTGAGATTCTTGCTTTACCTTTTCTATTATCTTCACAAATACTCCCT
CCATTCATTGTTATAAGATGTTCTAGTTTTCTTGAATGACAGACGTA--------TTTTAGTGTGTTTGTTTACTCATTT
CTATCTATATCTAGTCTATATTAAAATATTCAAAACGTCTTACAATAGTGGTAAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S
-----------SS----------------------------------------S---------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------------------------S-------------------------S----------------
---------------------------------------------------------------------------S----
------------------SS------------------------------------------------------------
---S-----------------------------------S------------------------------------S--S
----S-------------SSSSSSSS-------------S----------------------------------S-----
-----------------------------------S--------------------------------------------
------------------------------S-------------------------------------------------
----------------S-------SS-S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-------------------S-S--------------S----S-SSSS----S------------S----S---------S
----------------------------------------------S---------------S-----------------
--------------------------------------------------------------------------------
-------------S-----------------------------------------------------------S------
------------------------------------S----------------SS-------------------------
---------------------------------------------------------------------------S----
-----------------------------------------------------------S-----------S--------
--S------SS---S----------S----S-------SS------S-----SS------S----------S--------
-----S----------------S--SS--S---------------S----------S----S---SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_60
----------------------------------------AGGAGCCATGAAGTCTTGCC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAGTGAGCTCGGTCACCAAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
