Multiple sequence alignment - TraesCS1B01G201100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G201100 chr1B 100.000 2309 0 0 1 2309 359911157 359908849 0.000000e+00 4265.0
1 TraesCS1B01G201100 chr1D 94.454 1803 72 10 527 2309 252912001 252913795 0.000000e+00 2750.0
2 TraesCS1B01G201100 chr1A 89.574 681 51 14 966 1636 324490306 324490976 0.000000e+00 846.0
3 TraesCS1B01G201100 chr1A 91.707 410 19 4 527 922 324489888 324490296 2.590000e-154 555.0
4 TraesCS1B01G201100 chr1A 81.994 361 33 12 1953 2309 324491381 324491713 6.280000e-71 278.0
5 TraesCS1B01G201100 chr5D 93.706 429 20 3 100 523 136948271 136948697 9.000000e-179 636.0
6 TraesCS1B01G201100 chr4B 89.737 380 31 4 100 476 193967456 193967082 1.600000e-131 479.0
7 TraesCS1B01G201100 chr4B 82.353 85 15 0 1087 1171 462928053 462928137 8.850000e-10 75.0
8 TraesCS1B01G201100 chr3B 75.536 233 52 5 99 328 173556849 173557079 2.430000e-20 110.0
9 TraesCS1B01G201100 chr3B 82.558 86 13 2 1087 1171 52617626 52617710 8.850000e-10 75.0
10 TraesCS1B01G201100 chr6B 85.714 84 3 6 1092 1171 107078003 107078081 1.900000e-11 80.5
11 TraesCS1B01G201100 chrUn 84.524 84 4 6 1092 1171 98088467 98088545 8.850000e-10 75.0
12 TraesCS1B01G201100 chrUn 97.674 43 1 0 1129 1171 356572680 356572638 8.850000e-10 75.0
13 TraesCS1B01G201100 chr6A 84.524 84 4 6 1092 1171 53146438 53146516 8.850000e-10 75.0
14 TraesCS1B01G201100 chr7A 95.349 43 2 0 1129 1171 61453164 61453122 4.120000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G201100 chr1B 359908849 359911157 2308 True 4265.000000 4265 100.000000 1 2309 1 chr1B.!!$R1 2308
1 TraesCS1B01G201100 chr1D 252912001 252913795 1794 False 2750.000000 2750 94.454000 527 2309 1 chr1D.!!$F1 1782
2 TraesCS1B01G201100 chr1A 324489888 324491713 1825 False 559.666667 846 87.758333 527 2309 3 chr1A.!!$F1 1782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.034089 GGCCTTGCCTGGTGAAGTAT 60.034 55.0 0.0 0.0 46.69 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 2495 0.534203 ACACTTCCGCGTTCATGGTT 60.534 50.0 4.92 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.539770 AAAAACATGTGTTGTGAACATTTACA 57.460 26.923 0.93 0.00 44.35 2.41
26 27 8.539770 AAAACATGTGTTGTGAACATTTACAA 57.460 26.923 0.00 0.00 44.35 2.41
27 28 8.539770 AAACATGTGTTGTGAACATTTACAAA 57.460 26.923 0.00 0.00 44.35 2.83
28 29 8.539770 AACATGTGTTGTGAACATTTACAAAA 57.460 26.923 0.00 0.00 44.35 2.44
29 30 8.539770 ACATGTGTTGTGAACATTTACAAAAA 57.460 26.923 0.00 0.00 44.35 1.94
82 83 9.928618 TTAATATTTCAAGTTGGTATCATGGGA 57.071 29.630 2.34 0.00 0.00 4.37
83 84 8.469309 AATATTTCAAGTTGGTATCATGGGAG 57.531 34.615 2.34 0.00 0.00 4.30
84 85 3.281727 TCAAGTTGGTATCATGGGAGC 57.718 47.619 2.34 0.00 0.00 4.70
85 86 2.575735 TCAAGTTGGTATCATGGGAGCA 59.424 45.455 2.34 0.00 0.00 4.26
86 87 3.202818 TCAAGTTGGTATCATGGGAGCAT 59.797 43.478 2.34 0.00 0.00 3.79
87 88 3.219176 AGTTGGTATCATGGGAGCATG 57.781 47.619 0.00 0.00 0.00 4.06
88 89 2.511218 AGTTGGTATCATGGGAGCATGT 59.489 45.455 0.00 0.00 34.39 3.21
89 90 3.716353 AGTTGGTATCATGGGAGCATGTA 59.284 43.478 0.00 0.00 34.39 2.29
90 91 4.165950 AGTTGGTATCATGGGAGCATGTAA 59.834 41.667 0.00 0.00 34.39 2.41
91 92 4.356405 TGGTATCATGGGAGCATGTAAG 57.644 45.455 0.00 0.00 34.39 2.34
92 93 3.072915 TGGTATCATGGGAGCATGTAAGG 59.927 47.826 0.00 0.00 34.39 2.69
93 94 2.965671 ATCATGGGAGCATGTAAGGG 57.034 50.000 0.00 0.00 34.39 3.95
94 95 1.891933 TCATGGGAGCATGTAAGGGA 58.108 50.000 0.00 0.00 34.39 4.20
95 96 2.421725 TCATGGGAGCATGTAAGGGAT 58.578 47.619 0.00 0.00 34.39 3.85
96 97 2.785269 TCATGGGAGCATGTAAGGGATT 59.215 45.455 0.00 0.00 34.39 3.01
97 98 2.734755 TGGGAGCATGTAAGGGATTG 57.265 50.000 0.00 0.00 0.00 2.67
98 99 1.922447 TGGGAGCATGTAAGGGATTGT 59.078 47.619 0.00 0.00 0.00 2.71
99 100 2.301346 GGGAGCATGTAAGGGATTGTG 58.699 52.381 0.00 0.00 0.00 3.33
100 101 2.301346 GGAGCATGTAAGGGATTGTGG 58.699 52.381 0.00 0.00 0.00 4.17
101 102 2.301346 GAGCATGTAAGGGATTGTGGG 58.699 52.381 0.00 0.00 0.00 4.61
102 103 0.746659 GCATGTAAGGGATTGTGGGC 59.253 55.000 0.00 0.00 0.00 5.36
103 104 1.402787 CATGTAAGGGATTGTGGGCC 58.597 55.000 0.00 0.00 0.00 5.80
104 105 1.006813 ATGTAAGGGATTGTGGGCCA 58.993 50.000 0.00 0.00 0.00 5.36
105 106 0.331278 TGTAAGGGATTGTGGGCCAG 59.669 55.000 6.40 0.00 0.00 4.85
106 107 0.331616 GTAAGGGATTGTGGGCCAGT 59.668 55.000 6.40 0.00 0.00 4.00
107 108 1.080638 TAAGGGATTGTGGGCCAGTT 58.919 50.000 6.40 0.00 0.00 3.16
108 109 0.190815 AAGGGATTGTGGGCCAGTTT 59.809 50.000 6.40 0.00 0.00 2.66
109 110 0.542702 AGGGATTGTGGGCCAGTTTG 60.543 55.000 6.40 0.00 0.00 2.93
110 111 1.543944 GGGATTGTGGGCCAGTTTGG 61.544 60.000 6.40 0.00 41.55 3.28
111 112 0.831711 GGATTGTGGGCCAGTTTGGT 60.832 55.000 6.40 0.00 40.46 3.67
112 113 1.047801 GATTGTGGGCCAGTTTGGTT 58.952 50.000 6.40 0.00 40.46 3.67
113 114 1.416030 GATTGTGGGCCAGTTTGGTTT 59.584 47.619 6.40 0.00 40.46 3.27
114 115 0.539051 TTGTGGGCCAGTTTGGTTTG 59.461 50.000 6.40 0.00 40.46 2.93
115 116 0.616111 TGTGGGCCAGTTTGGTTTGT 60.616 50.000 6.40 0.00 40.46 2.83
116 117 0.179086 GTGGGCCAGTTTGGTTTGTG 60.179 55.000 6.40 0.00 40.46 3.33
117 118 0.616111 TGGGCCAGTTTGGTTTGTGT 60.616 50.000 0.00 0.00 40.46 3.72
118 119 0.104120 GGGCCAGTTTGGTTTGTGTC 59.896 55.000 4.39 0.00 40.46 3.67
119 120 0.104120 GGCCAGTTTGGTTTGTGTCC 59.896 55.000 0.00 0.00 40.46 4.02
120 121 1.111277 GCCAGTTTGGTTTGTGTCCT 58.889 50.000 0.00 0.00 40.46 3.85
121 122 1.202405 GCCAGTTTGGTTTGTGTCCTG 60.202 52.381 0.00 0.00 40.46 3.86
122 123 1.408702 CCAGTTTGGTTTGTGTCCTGG 59.591 52.381 0.00 0.00 31.35 4.45
123 124 1.408702 CAGTTTGGTTTGTGTCCTGGG 59.591 52.381 0.00 0.00 0.00 4.45
124 125 0.104120 GTTTGGTTTGTGTCCTGGGC 59.896 55.000 0.00 0.00 0.00 5.36
125 126 0.324738 TTTGGTTTGTGTCCTGGGCA 60.325 50.000 0.00 0.00 0.00 5.36
126 127 0.324738 TTGGTTTGTGTCCTGGGCAA 60.325 50.000 0.72 0.00 0.00 4.52
127 128 0.105760 TGGTTTGTGTCCTGGGCAAT 60.106 50.000 0.72 0.00 0.00 3.56
128 129 0.318120 GGTTTGTGTCCTGGGCAATG 59.682 55.000 0.72 0.00 0.00 2.82
129 130 1.039856 GTTTGTGTCCTGGGCAATGT 58.960 50.000 0.72 0.00 0.00 2.71
130 131 1.039068 TTTGTGTCCTGGGCAATGTG 58.961 50.000 0.72 0.00 0.00 3.21
131 132 1.462731 TTGTGTCCTGGGCAATGTGC 61.463 55.000 0.72 0.00 44.08 4.57
143 144 3.323751 GCAATGTGCCTGGAGAATTTT 57.676 42.857 0.00 0.00 37.42 1.82
144 145 2.997986 GCAATGTGCCTGGAGAATTTTG 59.002 45.455 0.00 0.00 37.42 2.44
145 146 3.306225 GCAATGTGCCTGGAGAATTTTGA 60.306 43.478 0.00 0.00 37.42 2.69
146 147 4.622220 GCAATGTGCCTGGAGAATTTTGAT 60.622 41.667 0.00 0.00 37.42 2.57
147 148 4.730949 ATGTGCCTGGAGAATTTTGATG 57.269 40.909 0.00 0.00 0.00 3.07
148 149 2.231964 TGTGCCTGGAGAATTTTGATGC 59.768 45.455 0.00 0.00 0.00 3.91
149 150 1.826720 TGCCTGGAGAATTTTGATGCC 59.173 47.619 0.00 0.00 0.00 4.40
150 151 2.105766 GCCTGGAGAATTTTGATGCCT 58.894 47.619 0.00 0.00 0.00 4.75
151 152 2.159142 GCCTGGAGAATTTTGATGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
152 153 2.429610 CCTGGAGAATTTTGATGCCTGG 59.570 50.000 0.00 0.00 0.00 4.45
153 154 2.429610 CTGGAGAATTTTGATGCCTGGG 59.570 50.000 0.00 0.00 0.00 4.45
154 155 2.042842 TGGAGAATTTTGATGCCTGGGA 59.957 45.455 0.00 0.00 0.00 4.37
155 156 3.303049 GGAGAATTTTGATGCCTGGGAT 58.697 45.455 0.00 0.00 0.00 3.85
156 157 3.069158 GGAGAATTTTGATGCCTGGGATG 59.931 47.826 5.06 0.00 0.00 3.51
157 158 3.703052 GAGAATTTTGATGCCTGGGATGT 59.297 43.478 5.06 0.00 0.00 3.06
158 159 3.449737 AGAATTTTGATGCCTGGGATGTG 59.550 43.478 5.06 0.00 0.00 3.21
159 160 0.896923 TTTTGATGCCTGGGATGTGC 59.103 50.000 5.06 0.00 0.00 4.57
160 161 0.971959 TTTGATGCCTGGGATGTGCC 60.972 55.000 5.06 0.00 0.00 5.01
161 162 1.866483 TTGATGCCTGGGATGTGCCT 61.866 55.000 5.06 0.00 36.66 4.75
162 163 1.826921 GATGCCTGGGATGTGCCTG 60.827 63.158 5.06 0.00 36.66 4.85
163 164 2.274948 GATGCCTGGGATGTGCCTGA 62.275 60.000 5.06 0.00 36.66 3.86
164 165 1.866483 ATGCCTGGGATGTGCCTGAA 61.866 55.000 0.00 0.00 36.66 3.02
165 166 1.304381 GCCTGGGATGTGCCTGAAA 60.304 57.895 0.00 0.00 36.66 2.69
166 167 0.899717 GCCTGGGATGTGCCTGAAAA 60.900 55.000 0.00 0.00 36.66 2.29
167 168 1.180029 CCTGGGATGTGCCTGAAAAG 58.820 55.000 0.00 0.00 36.66 2.27
168 169 1.548582 CCTGGGATGTGCCTGAAAAGT 60.549 52.381 0.00 0.00 36.66 2.66
169 170 1.815003 CTGGGATGTGCCTGAAAAGTC 59.185 52.381 0.00 0.00 36.66 3.01
170 171 1.425066 TGGGATGTGCCTGAAAAGTCT 59.575 47.619 0.00 0.00 36.66 3.24
171 172 1.815003 GGGATGTGCCTGAAAAGTCTG 59.185 52.381 0.00 0.00 36.66 3.51
172 173 2.553028 GGGATGTGCCTGAAAAGTCTGA 60.553 50.000 0.00 0.00 36.66 3.27
173 174 3.149196 GGATGTGCCTGAAAAGTCTGAA 58.851 45.455 0.00 0.00 0.00 3.02
174 175 3.760684 GGATGTGCCTGAAAAGTCTGAAT 59.239 43.478 0.00 0.00 0.00 2.57
175 176 4.219288 GGATGTGCCTGAAAAGTCTGAATT 59.781 41.667 0.00 0.00 0.00 2.17
176 177 5.279156 GGATGTGCCTGAAAAGTCTGAATTT 60.279 40.000 0.00 0.00 0.00 1.82
177 178 5.596836 TGTGCCTGAAAAGTCTGAATTTT 57.403 34.783 14.81 14.81 32.68 1.82
178 179 5.350633 TGTGCCTGAAAAGTCTGAATTTTG 58.649 37.500 19.07 7.49 30.22 2.44
179 180 5.105392 TGTGCCTGAAAAGTCTGAATTTTGT 60.105 36.000 19.07 0.00 30.22 2.83
180 181 5.232838 GTGCCTGAAAAGTCTGAATTTTGTG 59.767 40.000 19.07 11.37 30.22 3.33
181 182 4.209911 GCCTGAAAAGTCTGAATTTTGTGC 59.790 41.667 19.07 14.03 30.22 4.57
182 183 4.746611 CCTGAAAAGTCTGAATTTTGTGCC 59.253 41.667 19.07 6.66 30.22 5.01
183 184 5.452356 CCTGAAAAGTCTGAATTTTGTGCCT 60.452 40.000 19.07 0.00 30.22 4.75
184 185 5.350633 TGAAAAGTCTGAATTTTGTGCCTG 58.649 37.500 19.07 0.00 30.22 4.85
185 186 4.326504 AAAGTCTGAATTTTGTGCCTGG 57.673 40.909 0.00 0.00 0.00 4.45
186 187 1.615392 AGTCTGAATTTTGTGCCTGGC 59.385 47.619 12.87 12.87 0.00 4.85
187 188 0.968405 TCTGAATTTTGTGCCTGGCC 59.032 50.000 17.53 8.23 0.00 5.36
188 189 0.680618 CTGAATTTTGTGCCTGGCCA 59.319 50.000 17.53 4.71 0.00 5.36
189 190 0.680618 TGAATTTTGTGCCTGGCCAG 59.319 50.000 26.87 26.87 0.00 4.85
205 206 2.445654 AGGCTAGCCTGGGAGAGC 60.446 66.667 35.59 4.45 46.22 4.09
206 207 2.765807 GGCTAGCCTGGGAGAGCA 60.766 66.667 27.17 0.00 36.63 4.26
207 208 2.146061 GGCTAGCCTGGGAGAGCAT 61.146 63.158 27.17 0.00 36.63 3.79
208 209 1.704007 GGCTAGCCTGGGAGAGCATT 61.704 60.000 27.17 0.00 36.63 3.56
209 210 0.534652 GCTAGCCTGGGAGAGCATTG 60.535 60.000 2.29 0.00 34.96 2.82
210 211 0.835941 CTAGCCTGGGAGAGCATTGT 59.164 55.000 0.00 0.00 0.00 2.71
211 212 1.211457 CTAGCCTGGGAGAGCATTGTT 59.789 52.381 0.00 0.00 0.00 2.83
212 213 0.407139 AGCCTGGGAGAGCATTGTTT 59.593 50.000 0.00 0.00 0.00 2.83
213 214 0.529378 GCCTGGGAGAGCATTGTTTG 59.471 55.000 0.00 0.00 0.00 2.93
214 215 1.180029 CCTGGGAGAGCATTGTTTGG 58.820 55.000 0.00 0.00 0.00 3.28
215 216 1.548582 CCTGGGAGAGCATTGTTTGGT 60.549 52.381 0.00 0.00 39.22 3.67
216 217 2.242043 CTGGGAGAGCATTGTTTGGTT 58.758 47.619 0.00 0.00 35.82 3.67
217 218 1.962807 TGGGAGAGCATTGTTTGGTTG 59.037 47.619 0.00 0.00 35.82 3.77
218 219 1.273327 GGGAGAGCATTGTTTGGTTGG 59.727 52.381 0.00 0.00 35.82 3.77
219 220 1.963515 GGAGAGCATTGTTTGGTTGGT 59.036 47.619 0.00 0.00 35.82 3.67
220 221 2.288395 GGAGAGCATTGTTTGGTTGGTG 60.288 50.000 0.00 0.00 35.82 4.17
221 222 1.688197 AGAGCATTGTTTGGTTGGTGG 59.312 47.619 0.00 0.00 35.82 4.61
222 223 0.106521 AGCATTGTTTGGTTGGTGGC 59.893 50.000 0.00 0.00 29.87 5.01
223 224 0.884259 GCATTGTTTGGTTGGTGGCC 60.884 55.000 0.00 0.00 0.00 5.36
224 225 0.758123 CATTGTTTGGTTGGTGGCCT 59.242 50.000 3.32 0.00 0.00 5.19
225 226 1.140652 CATTGTTTGGTTGGTGGCCTT 59.859 47.619 3.32 0.00 0.00 4.35
226 227 0.539051 TTGTTTGGTTGGTGGCCTTG 59.461 50.000 3.32 0.00 0.00 3.61
227 228 1.227527 GTTTGGTTGGTGGCCTTGC 60.228 57.895 3.32 0.00 0.00 4.01
237 238 2.116125 GGCCTTGCCTGGTGAAGT 59.884 61.111 0.00 0.00 46.69 3.01
238 239 1.378762 GGCCTTGCCTGGTGAAGTA 59.621 57.895 0.00 0.00 46.69 2.24
239 240 0.034089 GGCCTTGCCTGGTGAAGTAT 60.034 55.000 0.00 0.00 46.69 2.12
240 241 1.616994 GGCCTTGCCTGGTGAAGTATT 60.617 52.381 0.00 0.00 46.69 1.89
241 242 2.356741 GGCCTTGCCTGGTGAAGTATTA 60.357 50.000 0.00 0.00 46.69 0.98
242 243 2.945668 GCCTTGCCTGGTGAAGTATTAG 59.054 50.000 0.00 0.00 0.00 1.73
243 244 3.370527 GCCTTGCCTGGTGAAGTATTAGA 60.371 47.826 0.00 0.00 0.00 2.10
244 245 4.446371 CCTTGCCTGGTGAAGTATTAGAG 58.554 47.826 0.00 0.00 0.00 2.43
245 246 4.162320 CCTTGCCTGGTGAAGTATTAGAGA 59.838 45.833 0.00 0.00 0.00 3.10
246 247 5.163258 CCTTGCCTGGTGAAGTATTAGAGAT 60.163 44.000 0.00 0.00 0.00 2.75
247 248 6.042093 CCTTGCCTGGTGAAGTATTAGAGATA 59.958 42.308 0.00 0.00 0.00 1.98
248 249 6.656632 TGCCTGGTGAAGTATTAGAGATAG 57.343 41.667 0.00 0.00 0.00 2.08
249 250 6.136857 TGCCTGGTGAAGTATTAGAGATAGT 58.863 40.000 0.00 0.00 0.00 2.12
250 251 6.611642 TGCCTGGTGAAGTATTAGAGATAGTT 59.388 38.462 0.00 0.00 0.00 2.24
251 252 7.125811 TGCCTGGTGAAGTATTAGAGATAGTTT 59.874 37.037 0.00 0.00 0.00 2.66
252 253 7.988028 GCCTGGTGAAGTATTAGAGATAGTTTT 59.012 37.037 0.00 0.00 0.00 2.43
279 280 7.681939 ATGGTAAAATGTTGTACTAGTGTGG 57.318 36.000 5.39 0.00 0.00 4.17
280 281 6.828788 TGGTAAAATGTTGTACTAGTGTGGA 58.171 36.000 5.39 0.00 0.00 4.02
281 282 6.932400 TGGTAAAATGTTGTACTAGTGTGGAG 59.068 38.462 5.39 0.00 0.00 3.86
282 283 5.941948 AAAATGTTGTACTAGTGTGGAGC 57.058 39.130 5.39 0.00 0.00 4.70
283 284 3.611766 ATGTTGTACTAGTGTGGAGCC 57.388 47.619 5.39 0.00 0.00 4.70
284 285 1.621814 TGTTGTACTAGTGTGGAGCCC 59.378 52.381 5.39 0.00 0.00 5.19
285 286 1.621814 GTTGTACTAGTGTGGAGCCCA 59.378 52.381 5.39 0.00 0.00 5.36
294 295 3.839589 TGGAGCCCACCATCACAT 58.160 55.556 0.00 0.00 34.77 3.21
295 296 1.609239 TGGAGCCCACCATCACATC 59.391 57.895 0.00 0.00 34.77 3.06
296 297 1.152881 GGAGCCCACCATCACATCC 60.153 63.158 0.00 0.00 0.00 3.51
297 298 1.609239 GAGCCCACCATCACATCCA 59.391 57.895 0.00 0.00 0.00 3.41
298 299 0.034186 GAGCCCACCATCACATCCAA 60.034 55.000 0.00 0.00 0.00 3.53
299 300 0.409092 AGCCCACCATCACATCCAAA 59.591 50.000 0.00 0.00 0.00 3.28
300 301 1.007479 AGCCCACCATCACATCCAAAT 59.993 47.619 0.00 0.00 0.00 2.32
301 302 2.244510 AGCCCACCATCACATCCAAATA 59.755 45.455 0.00 0.00 0.00 1.40
302 303 3.117016 AGCCCACCATCACATCCAAATAT 60.117 43.478 0.00 0.00 0.00 1.28
303 304 3.642848 GCCCACCATCACATCCAAATATT 59.357 43.478 0.00 0.00 0.00 1.28
304 305 4.832266 GCCCACCATCACATCCAAATATTA 59.168 41.667 0.00 0.00 0.00 0.98
305 306 5.304101 GCCCACCATCACATCCAAATATTAA 59.696 40.000 0.00 0.00 0.00 1.40
306 307 6.183360 GCCCACCATCACATCCAAATATTAAA 60.183 38.462 0.00 0.00 0.00 1.52
307 308 7.473228 GCCCACCATCACATCCAAATATTAAAT 60.473 37.037 0.00 0.00 0.00 1.40
308 309 8.431222 CCCACCATCACATCCAAATATTAAATT 58.569 33.333 0.00 0.00 0.00 1.82
326 327 7.568199 TTAAATTACTAATCAAGAGCCAGGC 57.432 36.000 1.84 1.84 0.00 4.85
327 328 4.778213 ATTACTAATCAAGAGCCAGGCA 57.222 40.909 15.80 0.00 0.00 4.75
328 329 2.409948 ACTAATCAAGAGCCAGGCAC 57.590 50.000 15.80 7.68 0.00 5.01
329 330 1.065126 ACTAATCAAGAGCCAGGCACC 60.065 52.381 15.80 4.82 0.00 5.01
330 331 0.255890 TAATCAAGAGCCAGGCACCC 59.744 55.000 15.80 1.93 0.00 4.61
331 332 1.792757 AATCAAGAGCCAGGCACCCA 61.793 55.000 15.80 0.00 0.00 4.51
332 333 2.207501 ATCAAGAGCCAGGCACCCAG 62.208 60.000 15.80 0.05 0.00 4.45
333 334 2.530151 AAGAGCCAGGCACCCAGA 60.530 61.111 15.80 0.00 0.00 3.86
334 335 2.900106 AAGAGCCAGGCACCCAGAC 61.900 63.158 15.80 0.00 0.00 3.51
335 336 4.767255 GAGCCAGGCACCCAGACG 62.767 72.222 15.80 0.00 0.00 4.18
338 339 4.394712 CCAGGCACCCAGACGTCC 62.395 72.222 13.01 0.00 0.00 4.79
339 340 3.625897 CAGGCACCCAGACGTCCA 61.626 66.667 13.01 0.00 0.00 4.02
340 341 2.847234 AGGCACCCAGACGTCCAA 60.847 61.111 13.01 0.00 0.00 3.53
341 342 2.112297 GGCACCCAGACGTCCAAA 59.888 61.111 13.01 0.00 0.00 3.28
342 343 1.527380 GGCACCCAGACGTCCAAAA 60.527 57.895 13.01 0.00 0.00 2.44
343 344 0.893727 GGCACCCAGACGTCCAAAAT 60.894 55.000 13.01 0.00 0.00 1.82
344 345 1.612199 GGCACCCAGACGTCCAAAATA 60.612 52.381 13.01 0.00 0.00 1.40
345 346 1.737793 GCACCCAGACGTCCAAAATAG 59.262 52.381 13.01 0.00 0.00 1.73
346 347 2.614481 GCACCCAGACGTCCAAAATAGA 60.614 50.000 13.01 0.00 0.00 1.98
347 348 3.873910 CACCCAGACGTCCAAAATAGAT 58.126 45.455 13.01 0.00 0.00 1.98
348 349 3.623060 CACCCAGACGTCCAAAATAGATG 59.377 47.826 13.01 0.00 0.00 2.90
349 350 3.263425 ACCCAGACGTCCAAAATAGATGT 59.737 43.478 13.01 0.00 36.19 3.06
350 351 3.871594 CCCAGACGTCCAAAATAGATGTC 59.128 47.826 13.01 5.22 46.28 3.06
351 352 3.871594 CCAGACGTCCAAAATAGATGTCC 59.128 47.826 13.01 0.00 46.84 4.02
352 353 4.383118 CCAGACGTCCAAAATAGATGTCCT 60.383 45.833 13.01 0.00 46.84 3.85
353 354 4.568359 CAGACGTCCAAAATAGATGTCCTG 59.432 45.833 13.01 0.00 46.84 3.86
354 355 4.466370 AGACGTCCAAAATAGATGTCCTGA 59.534 41.667 13.01 0.00 46.84 3.86
355 356 5.046591 AGACGTCCAAAATAGATGTCCTGAA 60.047 40.000 13.01 0.00 46.84 3.02
356 357 4.935808 ACGTCCAAAATAGATGTCCTGAAC 59.064 41.667 0.00 0.00 0.00 3.18
357 358 4.332819 CGTCCAAAATAGATGTCCTGAACC 59.667 45.833 0.00 0.00 0.00 3.62
358 359 5.253330 GTCCAAAATAGATGTCCTGAACCA 58.747 41.667 0.00 0.00 0.00 3.67
359 360 5.355350 GTCCAAAATAGATGTCCTGAACCAG 59.645 44.000 0.00 0.00 0.00 4.00
377 378 3.518003 GCTAAGCCACATGCCTGG 58.482 61.111 0.00 0.00 42.71 4.45
378 379 1.379044 GCTAAGCCACATGCCTGGT 60.379 57.895 4.42 0.00 42.71 4.00
379 380 0.107214 GCTAAGCCACATGCCTGGTA 60.107 55.000 4.42 0.00 42.71 3.25
380 381 1.681780 GCTAAGCCACATGCCTGGTAA 60.682 52.381 4.42 0.00 42.71 2.85
381 382 2.722094 CTAAGCCACATGCCTGGTAAA 58.278 47.619 4.42 0.00 42.71 2.01
382 383 1.256812 AAGCCACATGCCTGGTAAAC 58.743 50.000 4.42 0.00 42.71 2.01
383 384 0.611896 AGCCACATGCCTGGTAAACC 60.612 55.000 4.42 0.00 42.71 3.27
384 385 1.933115 GCCACATGCCTGGTAAACCG 61.933 60.000 4.42 0.00 39.43 4.44
385 386 0.608035 CCACATGCCTGGTAAACCGT 60.608 55.000 0.00 0.00 39.43 4.83
386 387 0.802494 CACATGCCTGGTAAACCGTC 59.198 55.000 0.00 0.00 39.43 4.79
387 388 0.322187 ACATGCCTGGTAAACCGTCC 60.322 55.000 0.00 0.00 39.43 4.79
388 389 0.322098 CATGCCTGGTAAACCGTCCA 60.322 55.000 0.00 0.00 39.43 4.02
391 392 4.296265 CTGGTAAACCGTCCAGGC 57.704 61.111 3.58 0.00 45.11 4.85
392 393 1.677552 CTGGTAAACCGTCCAGGCT 59.322 57.895 3.58 0.00 45.11 4.58
393 394 0.899720 CTGGTAAACCGTCCAGGCTA 59.100 55.000 3.58 0.00 45.11 3.93
394 395 1.276989 CTGGTAAACCGTCCAGGCTAA 59.723 52.381 3.58 0.00 45.11 3.09
395 396 1.910671 TGGTAAACCGTCCAGGCTAAT 59.089 47.619 0.00 0.00 46.52 1.73
396 397 2.093341 TGGTAAACCGTCCAGGCTAATC 60.093 50.000 0.00 0.00 46.52 1.75
397 398 2.093341 GGTAAACCGTCCAGGCTAATCA 60.093 50.000 0.00 0.00 46.52 2.57
398 399 2.109425 AAACCGTCCAGGCTAATCAC 57.891 50.000 0.00 0.00 46.52 3.06
399 400 0.981183 AACCGTCCAGGCTAATCACA 59.019 50.000 0.00 0.00 46.52 3.58
400 401 0.537188 ACCGTCCAGGCTAATCACAG 59.463 55.000 0.00 0.00 46.52 3.66
401 402 0.537188 CCGTCCAGGCTAATCACAGT 59.463 55.000 0.00 0.00 0.00 3.55
402 403 1.754803 CCGTCCAGGCTAATCACAGTA 59.245 52.381 0.00 0.00 0.00 2.74
403 404 2.481449 CCGTCCAGGCTAATCACAGTAC 60.481 54.545 0.00 0.00 0.00 2.73
404 405 2.165641 CGTCCAGGCTAATCACAGTACA 59.834 50.000 0.00 0.00 0.00 2.90
405 406 3.735208 CGTCCAGGCTAATCACAGTACAG 60.735 52.174 0.00 0.00 0.00 2.74
406 407 3.447586 GTCCAGGCTAATCACAGTACAGA 59.552 47.826 0.00 0.00 0.00 3.41
407 408 4.100189 GTCCAGGCTAATCACAGTACAGAT 59.900 45.833 0.00 0.00 0.00 2.90
408 409 4.100035 TCCAGGCTAATCACAGTACAGATG 59.900 45.833 0.00 0.00 0.00 2.90
409 410 4.100035 CCAGGCTAATCACAGTACAGATGA 59.900 45.833 0.00 0.00 0.00 2.92
410 411 5.395657 CCAGGCTAATCACAGTACAGATGAA 60.396 44.000 0.00 0.00 0.00 2.57
411 412 6.286758 CAGGCTAATCACAGTACAGATGAAT 58.713 40.000 0.00 0.00 0.00 2.57
412 413 6.423302 CAGGCTAATCACAGTACAGATGAATC 59.577 42.308 0.00 0.00 0.00 2.52
413 414 6.098838 AGGCTAATCACAGTACAGATGAATCA 59.901 38.462 0.00 0.00 0.00 2.57
414 415 6.423302 GGCTAATCACAGTACAGATGAATCAG 59.577 42.308 0.00 0.00 0.00 2.90
415 416 6.423302 GCTAATCACAGTACAGATGAATCAGG 59.577 42.308 0.00 0.00 0.00 3.86
416 417 4.128925 TCACAGTACAGATGAATCAGGC 57.871 45.455 0.00 0.00 0.00 4.85
417 418 3.118629 TCACAGTACAGATGAATCAGGCC 60.119 47.826 0.00 0.00 0.00 5.19
418 419 2.840038 ACAGTACAGATGAATCAGGCCA 59.160 45.455 5.01 0.00 0.00 5.36
419 420 3.118482 ACAGTACAGATGAATCAGGCCAG 60.118 47.826 5.01 0.00 0.00 4.85
420 421 3.133542 CAGTACAGATGAATCAGGCCAGA 59.866 47.826 5.01 1.39 0.00 3.86
421 422 2.706339 ACAGATGAATCAGGCCAGAC 57.294 50.000 5.01 0.00 0.00 3.51
422 423 1.911357 ACAGATGAATCAGGCCAGACA 59.089 47.619 5.01 0.00 0.00 3.41
423 424 2.286872 CAGATGAATCAGGCCAGACAC 58.713 52.381 5.01 0.55 0.00 3.67
424 425 1.134580 AGATGAATCAGGCCAGACACG 60.135 52.381 5.01 0.00 0.00 4.49
425 426 0.745845 ATGAATCAGGCCAGACACGC 60.746 55.000 5.01 0.00 0.00 5.34
426 427 1.375908 GAATCAGGCCAGACACGCA 60.376 57.895 5.01 0.00 0.00 5.24
427 428 0.745845 GAATCAGGCCAGACACGCAT 60.746 55.000 5.01 0.00 0.00 4.73
428 429 1.028330 AATCAGGCCAGACACGCATG 61.028 55.000 5.01 0.00 39.31 4.06
429 430 3.807538 CAGGCCAGACACGCATGC 61.808 66.667 7.91 7.91 30.56 4.06
440 441 4.151417 CGCATGCGTTTTTCCAGG 57.849 55.556 31.33 0.00 34.35 4.45
441 442 1.444212 CGCATGCGTTTTTCCAGGG 60.444 57.895 31.33 0.00 34.35 4.45
442 443 1.665442 GCATGCGTTTTTCCAGGGT 59.335 52.632 0.00 0.00 0.00 4.34
443 444 0.885196 GCATGCGTTTTTCCAGGGTA 59.115 50.000 0.00 0.00 0.00 3.69
444 445 1.135402 GCATGCGTTTTTCCAGGGTAG 60.135 52.381 0.00 0.00 0.00 3.18
445 446 1.135402 CATGCGTTTTTCCAGGGTAGC 60.135 52.381 0.00 0.00 0.00 3.58
446 447 0.179015 TGCGTTTTTCCAGGGTAGCA 60.179 50.000 0.00 0.00 0.00 3.49
447 448 0.955905 GCGTTTTTCCAGGGTAGCAA 59.044 50.000 0.00 0.00 0.00 3.91
448 449 1.335597 GCGTTTTTCCAGGGTAGCAAC 60.336 52.381 0.00 0.00 0.00 4.17
449 450 1.268625 CGTTTTTCCAGGGTAGCAACC 59.731 52.381 0.00 0.00 45.97 3.77
460 461 3.349488 GGTAGCAACCAAACACACTTC 57.651 47.619 0.00 0.00 45.98 3.01
461 462 2.685897 GGTAGCAACCAAACACACTTCA 59.314 45.455 0.00 0.00 45.98 3.02
462 463 3.243068 GGTAGCAACCAAACACACTTCAG 60.243 47.826 0.00 0.00 45.98 3.02
463 464 1.750778 AGCAACCAAACACACTTCAGG 59.249 47.619 0.00 0.00 0.00 3.86
464 465 1.802508 GCAACCAAACACACTTCAGGC 60.803 52.381 0.00 0.00 0.00 4.85
465 466 1.476085 CAACCAAACACACTTCAGGCA 59.524 47.619 0.00 0.00 0.00 4.75
466 467 1.846007 ACCAAACACACTTCAGGCAA 58.154 45.000 0.00 0.00 0.00 4.52
467 468 2.387757 ACCAAACACACTTCAGGCAAT 58.612 42.857 0.00 0.00 0.00 3.56
468 469 2.765699 ACCAAACACACTTCAGGCAATT 59.234 40.909 0.00 0.00 0.00 2.32
469 470 3.197549 ACCAAACACACTTCAGGCAATTT 59.802 39.130 0.00 0.00 0.00 1.82
470 471 4.190772 CCAAACACACTTCAGGCAATTTT 58.809 39.130 0.00 0.00 0.00 1.82
471 472 4.270808 CCAAACACACTTCAGGCAATTTTC 59.729 41.667 0.00 0.00 0.00 2.29
472 473 4.734398 AACACACTTCAGGCAATTTTCA 57.266 36.364 0.00 0.00 0.00 2.69
473 474 4.311816 ACACACTTCAGGCAATTTTCAG 57.688 40.909 0.00 0.00 0.00 3.02
474 475 3.068590 ACACACTTCAGGCAATTTTCAGG 59.931 43.478 0.00 0.00 0.00 3.86
475 476 2.036346 ACACTTCAGGCAATTTTCAGGC 59.964 45.455 0.00 0.00 0.00 4.85
476 477 2.036217 CACTTCAGGCAATTTTCAGGCA 59.964 45.455 0.00 0.00 0.00 4.75
477 478 2.036346 ACTTCAGGCAATTTTCAGGCAC 59.964 45.455 0.00 0.00 0.00 5.01
478 479 0.597568 TCAGGCAATTTTCAGGCACG 59.402 50.000 0.00 0.00 0.00 5.34
479 480 1.010419 CAGGCAATTTTCAGGCACGC 61.010 55.000 0.00 0.00 0.00 5.34
480 481 1.181098 AGGCAATTTTCAGGCACGCT 61.181 50.000 0.00 0.00 0.00 5.07
481 482 0.733909 GGCAATTTTCAGGCACGCTC 60.734 55.000 0.00 0.00 0.00 5.03
482 483 0.733909 GCAATTTTCAGGCACGCTCC 60.734 55.000 0.00 0.00 0.00 4.70
483 484 0.597568 CAATTTTCAGGCACGCTCCA 59.402 50.000 0.00 0.00 0.00 3.86
484 485 0.883833 AATTTTCAGGCACGCTCCAG 59.116 50.000 0.00 0.00 0.00 3.86
485 486 0.962356 ATTTTCAGGCACGCTCCAGG 60.962 55.000 0.00 0.00 0.00 4.45
486 487 4.704833 TTCAGGCACGCTCCAGGC 62.705 66.667 0.00 0.00 37.64 4.85
492 493 3.390521 CACGCTCCAGGCCAGGTA 61.391 66.667 14.79 0.03 37.74 3.08
493 494 3.391382 ACGCTCCAGGCCAGGTAC 61.391 66.667 14.79 6.60 37.74 3.34
494 495 3.077556 CGCTCCAGGCCAGGTACT 61.078 66.667 14.79 0.00 37.74 2.73
495 496 2.660064 CGCTCCAGGCCAGGTACTT 61.660 63.158 14.79 0.00 37.74 2.24
496 497 1.685820 GCTCCAGGCCAGGTACTTT 59.314 57.895 14.79 0.00 34.60 2.66
497 498 0.393132 GCTCCAGGCCAGGTACTTTC 60.393 60.000 14.79 0.00 34.60 2.62
498 499 1.280457 CTCCAGGCCAGGTACTTTCT 58.720 55.000 14.79 0.00 34.60 2.52
499 500 0.984230 TCCAGGCCAGGTACTTTCTG 59.016 55.000 14.79 0.00 34.60 3.02
504 505 3.558674 CCAGGTACTTTCTGGCCAG 57.441 57.895 27.87 27.87 44.29 4.85
505 506 0.035056 CCAGGTACTTTCTGGCCAGG 60.035 60.000 32.23 18.81 44.29 4.45
506 507 0.035056 CAGGTACTTTCTGGCCAGGG 60.035 60.000 32.23 22.88 34.60 4.45
507 508 1.378646 GGTACTTTCTGGCCAGGGC 60.379 63.158 32.23 15.06 41.06 5.19
508 509 1.378762 GTACTTTCTGGCCAGGGCA 59.621 57.895 32.23 16.38 44.11 5.36
509 510 0.034089 GTACTTTCTGGCCAGGGCAT 60.034 55.000 32.23 17.76 44.11 4.40
510 511 0.034186 TACTTTCTGGCCAGGGCATG 60.034 55.000 32.23 19.19 44.11 4.06
511 512 1.000521 CTTTCTGGCCAGGGCATGA 60.001 57.895 32.23 13.14 44.11 3.07
512 513 0.396695 CTTTCTGGCCAGGGCATGAT 60.397 55.000 32.23 0.00 44.11 2.45
513 514 0.396139 TTTCTGGCCAGGGCATGATC 60.396 55.000 32.23 0.00 44.11 2.92
514 515 2.203451 CTGGCCAGGGCATGATCC 60.203 66.667 26.14 1.79 44.11 3.36
515 516 3.022497 TGGCCAGGGCATGATCCA 61.022 61.111 12.83 4.77 44.11 3.41
516 517 2.279743 GGCCAGGGCATGATCCAA 59.720 61.111 13.10 0.00 44.11 3.53
517 518 1.381599 GGCCAGGGCATGATCCAAA 60.382 57.895 13.10 0.00 44.11 3.28
518 519 1.679559 GGCCAGGGCATGATCCAAAC 61.680 60.000 13.10 0.00 44.11 2.93
519 520 0.685458 GCCAGGGCATGATCCAAACT 60.685 55.000 5.20 0.00 41.49 2.66
520 521 1.396653 CCAGGGCATGATCCAAACTC 58.603 55.000 0.00 0.00 0.00 3.01
521 522 1.019673 CAGGGCATGATCCAAACTCG 58.980 55.000 0.00 0.00 0.00 4.18
522 523 0.749454 AGGGCATGATCCAAACTCGC 60.749 55.000 0.00 0.00 0.00 5.03
523 524 0.749454 GGGCATGATCCAAACTCGCT 60.749 55.000 0.00 0.00 0.00 4.93
524 525 0.659957 GGCATGATCCAAACTCGCTC 59.340 55.000 0.00 0.00 0.00 5.03
525 526 1.661341 GCATGATCCAAACTCGCTCT 58.339 50.000 0.00 0.00 0.00 4.09
562 563 2.100989 ACCCTCGTATGTCTCTCCAAC 58.899 52.381 0.00 0.00 0.00 3.77
566 567 3.283751 CTCGTATGTCTCTCCAACCTCT 58.716 50.000 0.00 0.00 0.00 3.69
729 730 4.495679 GGCAAAGCATCGAATTATCAACGA 60.496 41.667 0.00 0.00 40.18 3.85
764 765 3.921021 CCTTATATGTAGCAGCGCTGTAC 59.079 47.826 35.80 31.24 40.10 2.90
830 831 1.078426 ACATTCCCGCTTTCCCTCG 60.078 57.895 0.00 0.00 0.00 4.63
880 894 2.743928 CGCCACAACCTGAGAGGC 60.744 66.667 0.00 0.00 39.63 4.70
929 944 4.334759 ACGTCTGTCTATAGTGTACGCATT 59.665 41.667 9.48 0.00 32.42 3.56
943 958 5.049680 GTGTACGCATTCTCCTCAAAGAAAA 60.050 40.000 0.39 0.00 38.69 2.29
980 995 5.663106 AGTGTACACATATTCTCCCACTCAT 59.337 40.000 27.06 0.00 0.00 2.90
1090 1117 3.068691 CGAGGGAGGAACGGCTGA 61.069 66.667 0.00 0.00 0.00 4.26
1362 1389 9.923143 TGCTTATTACTACTATTATGTGCGATT 57.077 29.630 0.00 0.00 0.00 3.34
1427 1456 1.601903 TGTGTTTGATGCCAACTCGTC 59.398 47.619 0.00 0.00 30.88 4.20
1439 1468 3.299977 CTCGTCCGTGGTGGTGGA 61.300 66.667 0.00 0.00 39.52 4.02
1447 1479 1.370064 GTGGTGGTGGAGCGTAGTT 59.630 57.895 0.00 0.00 0.00 2.24
1724 1763 5.390251 GGACGTTCGTTCTCTAAATTTTCCC 60.390 44.000 0.00 0.00 0.00 3.97
1771 1810 1.557099 TCACCATCCTTACGAGCAGT 58.443 50.000 0.00 0.00 0.00 4.40
1825 1864 4.855340 TCTTGACAAGTTCCTGGTTTCTT 58.145 39.130 14.75 0.00 0.00 2.52
1831 1870 2.222027 AGTTCCTGGTTTCTTCTTGCG 58.778 47.619 0.00 0.00 0.00 4.85
1833 1872 0.250727 TCCTGGTTTCTTCTTGCGGG 60.251 55.000 0.00 0.00 0.00 6.13
1834 1873 0.537371 CCTGGTTTCTTCTTGCGGGT 60.537 55.000 0.00 0.00 0.00 5.28
1835 1874 0.593128 CTGGTTTCTTCTTGCGGGTG 59.407 55.000 0.00 0.00 0.00 4.61
1836 1875 1.285950 GGTTTCTTCTTGCGGGTGC 59.714 57.895 0.00 0.00 43.20 5.01
1931 1970 5.063180 CAAGGAATTCTACTTGCAATGCA 57.937 39.130 2.72 2.72 37.82 3.96
1934 1973 6.382869 AGGAATTCTACTTGCAATGCATAC 57.617 37.500 9.39 0.00 38.76 2.39
1937 1976 2.905075 TCTACTTGCAATGCATACGCT 58.095 42.857 9.39 4.98 38.76 5.07
1941 1980 1.399440 CTTGCAATGCATACGCTCTGT 59.601 47.619 9.39 0.00 38.76 3.41
1948 1987 1.202817 TGCATACGCTCTGTTACGGAA 59.797 47.619 0.00 0.00 39.64 4.30
1957 2159 4.151689 CGCTCTGTTACGGAATTCTTCAAA 59.848 41.667 5.23 0.00 0.00 2.69
1978 2180 8.546597 TCAAACAATTTGAATCGACTAGATGA 57.453 30.769 2.79 0.00 45.94 2.92
1983 2185 7.063898 ACAATTTGAATCGACTAGATGACACTG 59.936 37.037 2.79 0.00 40.02 3.66
2187 2393 7.651027 ATGAAAAAGAGAGGTATGAAATGGG 57.349 36.000 0.00 0.00 0.00 4.00
2253 2459 1.774254 TGACTGGAGGTGTGAAATGGT 59.226 47.619 0.00 0.00 0.00 3.55
2262 2468 2.440409 GTGTGAAATGGTCATGCTCCT 58.560 47.619 7.95 0.00 38.90 3.69
2289 2495 4.295141 ACCAAGACAATTCCACGGAATA 57.705 40.909 11.67 0.00 43.26 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.539770 TGTAAATGTTCACAACACATGTTTTT 57.460 26.923 0.00 0.00 45.50 1.94
1 2 8.539770 TTGTAAATGTTCACAACACATGTTTT 57.460 26.923 0.00 0.00 45.50 2.43
2 3 8.539770 TTTGTAAATGTTCACAACACATGTTT 57.460 26.923 0.00 0.00 45.50 2.83
3 4 8.539770 TTTTGTAAATGTTCACAACACATGTT 57.460 26.923 0.00 0.00 45.50 2.71
4 5 8.539770 TTTTTGTAAATGTTCACAACACATGT 57.460 26.923 0.00 0.00 45.50 3.21
56 57 9.928618 TCCCATGATACCAACTTGAAATATTAA 57.071 29.630 0.00 0.00 0.00 1.40
57 58 9.573166 CTCCCATGATACCAACTTGAAATATTA 57.427 33.333 0.00 0.00 0.00 0.98
58 59 7.014615 GCTCCCATGATACCAACTTGAAATATT 59.985 37.037 0.00 0.00 0.00 1.28
59 60 6.491403 GCTCCCATGATACCAACTTGAAATAT 59.509 38.462 0.00 0.00 0.00 1.28
60 61 5.827797 GCTCCCATGATACCAACTTGAAATA 59.172 40.000 0.00 0.00 0.00 1.40
61 62 4.646492 GCTCCCATGATACCAACTTGAAAT 59.354 41.667 0.00 0.00 0.00 2.17
62 63 4.016444 GCTCCCATGATACCAACTTGAAA 58.984 43.478 0.00 0.00 0.00 2.69
63 64 3.010027 TGCTCCCATGATACCAACTTGAA 59.990 43.478 0.00 0.00 0.00 2.69
64 65 2.575735 TGCTCCCATGATACCAACTTGA 59.424 45.455 0.00 0.00 0.00 3.02
65 66 3.003394 TGCTCCCATGATACCAACTTG 57.997 47.619 0.00 0.00 0.00 3.16
66 67 3.959495 ATGCTCCCATGATACCAACTT 57.041 42.857 0.00 0.00 0.00 2.66
77 78 2.515429 ACAATCCCTTACATGCTCCCAT 59.485 45.455 0.00 0.00 0.00 4.00
78 79 1.922447 ACAATCCCTTACATGCTCCCA 59.078 47.619 0.00 0.00 0.00 4.37
79 80 2.301346 CACAATCCCTTACATGCTCCC 58.699 52.381 0.00 0.00 0.00 4.30
80 81 2.301346 CCACAATCCCTTACATGCTCC 58.699 52.381 0.00 0.00 0.00 4.70
81 82 2.301346 CCCACAATCCCTTACATGCTC 58.699 52.381 0.00 0.00 0.00 4.26
82 83 1.686115 GCCCACAATCCCTTACATGCT 60.686 52.381 0.00 0.00 0.00 3.79
83 84 0.746659 GCCCACAATCCCTTACATGC 59.253 55.000 0.00 0.00 0.00 4.06
84 85 1.341877 TGGCCCACAATCCCTTACATG 60.342 52.381 0.00 0.00 0.00 3.21
85 86 1.006813 TGGCCCACAATCCCTTACAT 58.993 50.000 0.00 0.00 0.00 2.29
86 87 0.331278 CTGGCCCACAATCCCTTACA 59.669 55.000 0.00 0.00 0.00 2.41
87 88 0.331616 ACTGGCCCACAATCCCTTAC 59.668 55.000 0.00 0.00 0.00 2.34
88 89 1.080638 AACTGGCCCACAATCCCTTA 58.919 50.000 0.00 0.00 0.00 2.69
89 90 0.190815 AAACTGGCCCACAATCCCTT 59.809 50.000 0.00 0.00 0.00 3.95
90 91 0.542702 CAAACTGGCCCACAATCCCT 60.543 55.000 0.00 0.00 0.00 4.20
91 92 1.543944 CCAAACTGGCCCACAATCCC 61.544 60.000 0.00 0.00 0.00 3.85
92 93 0.831711 ACCAAACTGGCCCACAATCC 60.832 55.000 0.00 0.00 42.67 3.01
93 94 1.047801 AACCAAACTGGCCCACAATC 58.952 50.000 0.00 0.00 42.67 2.67
94 95 1.140652 CAAACCAAACTGGCCCACAAT 59.859 47.619 0.00 0.00 42.67 2.71
95 96 0.539051 CAAACCAAACTGGCCCACAA 59.461 50.000 0.00 0.00 42.67 3.33
96 97 0.616111 ACAAACCAAACTGGCCCACA 60.616 50.000 0.00 0.00 42.67 4.17
97 98 0.179086 CACAAACCAAACTGGCCCAC 60.179 55.000 0.00 0.00 42.67 4.61
98 99 0.616111 ACACAAACCAAACTGGCCCA 60.616 50.000 0.00 0.00 42.67 5.36
99 100 0.104120 GACACAAACCAAACTGGCCC 59.896 55.000 0.00 0.00 42.67 5.80
100 101 0.104120 GGACACAAACCAAACTGGCC 59.896 55.000 0.00 0.00 42.67 5.36
101 102 1.111277 AGGACACAAACCAAACTGGC 58.889 50.000 0.00 0.00 42.67 4.85
102 103 1.408702 CCAGGACACAAACCAAACTGG 59.591 52.381 0.00 0.00 45.02 4.00
103 104 1.408702 CCCAGGACACAAACCAAACTG 59.591 52.381 0.00 0.00 0.00 3.16
104 105 1.775385 CCCAGGACACAAACCAAACT 58.225 50.000 0.00 0.00 0.00 2.66
105 106 0.104120 GCCCAGGACACAAACCAAAC 59.896 55.000 0.00 0.00 0.00 2.93
106 107 0.324738 TGCCCAGGACACAAACCAAA 60.325 50.000 0.00 0.00 0.00 3.28
107 108 0.324738 TTGCCCAGGACACAAACCAA 60.325 50.000 0.00 0.00 0.00 3.67
108 109 0.105760 ATTGCCCAGGACACAAACCA 60.106 50.000 0.00 0.00 0.00 3.67
109 110 0.318120 CATTGCCCAGGACACAAACC 59.682 55.000 0.00 0.00 0.00 3.27
110 111 1.039856 ACATTGCCCAGGACACAAAC 58.960 50.000 0.00 0.00 0.00 2.93
111 112 1.039068 CACATTGCCCAGGACACAAA 58.961 50.000 0.00 0.00 0.00 2.83
112 113 1.462731 GCACATTGCCCAGGACACAA 61.463 55.000 0.00 0.00 37.42 3.33
113 114 1.902918 GCACATTGCCCAGGACACA 60.903 57.895 0.00 0.00 37.42 3.72
114 115 2.964978 GCACATTGCCCAGGACAC 59.035 61.111 0.00 0.00 37.42 3.67
123 124 2.997986 CAAAATTCTCCAGGCACATTGC 59.002 45.455 0.00 0.00 44.08 3.56
124 125 4.524316 TCAAAATTCTCCAGGCACATTG 57.476 40.909 0.00 0.00 0.00 2.82
125 126 4.622220 GCATCAAAATTCTCCAGGCACATT 60.622 41.667 0.00 0.00 0.00 2.71
126 127 3.118884 GCATCAAAATTCTCCAGGCACAT 60.119 43.478 0.00 0.00 0.00 3.21
127 128 2.231964 GCATCAAAATTCTCCAGGCACA 59.768 45.455 0.00 0.00 0.00 4.57
128 129 2.417787 GGCATCAAAATTCTCCAGGCAC 60.418 50.000 0.00 0.00 0.00 5.01
129 130 1.826720 GGCATCAAAATTCTCCAGGCA 59.173 47.619 0.00 0.00 0.00 4.75
130 131 2.105766 AGGCATCAAAATTCTCCAGGC 58.894 47.619 0.00 0.00 0.00 4.85
131 132 2.429610 CCAGGCATCAAAATTCTCCAGG 59.570 50.000 0.00 0.00 0.00 4.45
132 133 2.429610 CCCAGGCATCAAAATTCTCCAG 59.570 50.000 0.00 0.00 0.00 3.86
133 134 2.042842 TCCCAGGCATCAAAATTCTCCA 59.957 45.455 0.00 0.00 0.00 3.86
134 135 2.738743 TCCCAGGCATCAAAATTCTCC 58.261 47.619 0.00 0.00 0.00 3.71
135 136 3.703052 ACATCCCAGGCATCAAAATTCTC 59.297 43.478 0.00 0.00 0.00 2.87
136 137 3.449737 CACATCCCAGGCATCAAAATTCT 59.550 43.478 0.00 0.00 0.00 2.40
137 138 3.788937 CACATCCCAGGCATCAAAATTC 58.211 45.455 0.00 0.00 0.00 2.17
138 139 2.093341 GCACATCCCAGGCATCAAAATT 60.093 45.455 0.00 0.00 0.00 1.82
139 140 1.483415 GCACATCCCAGGCATCAAAAT 59.517 47.619 0.00 0.00 0.00 1.82
140 141 0.896923 GCACATCCCAGGCATCAAAA 59.103 50.000 0.00 0.00 0.00 2.44
141 142 0.971959 GGCACATCCCAGGCATCAAA 60.972 55.000 0.00 0.00 0.00 2.69
142 143 1.380246 GGCACATCCCAGGCATCAA 60.380 57.895 0.00 0.00 0.00 2.57
143 144 2.276409 GGCACATCCCAGGCATCA 59.724 61.111 0.00 0.00 0.00 3.07
144 145 1.826921 CAGGCACATCCCAGGCATC 60.827 63.158 0.00 0.00 34.51 3.91
145 146 1.866483 TTCAGGCACATCCCAGGCAT 61.866 55.000 0.00 0.00 34.51 4.40
146 147 2.079088 TTTCAGGCACATCCCAGGCA 62.079 55.000 0.00 0.00 34.51 4.75
147 148 0.899717 TTTTCAGGCACATCCCAGGC 60.900 55.000 0.00 0.00 34.51 4.85
148 149 1.180029 CTTTTCAGGCACATCCCAGG 58.820 55.000 0.00 0.00 34.51 4.45
149 150 1.815003 GACTTTTCAGGCACATCCCAG 59.185 52.381 0.00 0.00 34.51 4.45
150 151 1.425066 AGACTTTTCAGGCACATCCCA 59.575 47.619 0.00 0.00 34.51 4.37
151 152 1.815003 CAGACTTTTCAGGCACATCCC 59.185 52.381 0.00 0.00 34.51 3.85
152 153 2.783135 TCAGACTTTTCAGGCACATCC 58.217 47.619 0.00 0.00 0.00 3.51
153 154 5.382618 AATTCAGACTTTTCAGGCACATC 57.617 39.130 0.00 0.00 0.00 3.06
154 155 5.796424 AAATTCAGACTTTTCAGGCACAT 57.204 34.783 0.00 0.00 0.00 3.21
155 156 5.105392 ACAAAATTCAGACTTTTCAGGCACA 60.105 36.000 0.00 0.00 0.00 4.57
156 157 5.232838 CACAAAATTCAGACTTTTCAGGCAC 59.767 40.000 0.00 0.00 0.00 5.01
157 158 5.350633 CACAAAATTCAGACTTTTCAGGCA 58.649 37.500 0.00 0.00 0.00 4.75
158 159 4.209911 GCACAAAATTCAGACTTTTCAGGC 59.790 41.667 0.00 0.00 0.00 4.85
159 160 4.746611 GGCACAAAATTCAGACTTTTCAGG 59.253 41.667 0.00 0.00 0.00 3.86
160 161 5.461078 CAGGCACAAAATTCAGACTTTTCAG 59.539 40.000 0.00 0.00 0.00 3.02
161 162 5.350633 CAGGCACAAAATTCAGACTTTTCA 58.649 37.500 0.00 0.00 0.00 2.69
162 163 4.746611 CCAGGCACAAAATTCAGACTTTTC 59.253 41.667 0.00 0.00 0.00 2.29
163 164 4.696455 CCAGGCACAAAATTCAGACTTTT 58.304 39.130 0.00 0.00 0.00 2.27
164 165 3.493176 GCCAGGCACAAAATTCAGACTTT 60.493 43.478 6.55 0.00 0.00 2.66
165 166 2.036346 GCCAGGCACAAAATTCAGACTT 59.964 45.455 6.55 0.00 0.00 3.01
166 167 1.615392 GCCAGGCACAAAATTCAGACT 59.385 47.619 6.55 0.00 0.00 3.24
167 168 1.337167 GGCCAGGCACAAAATTCAGAC 60.337 52.381 15.19 0.00 0.00 3.51
168 169 0.968405 GGCCAGGCACAAAATTCAGA 59.032 50.000 15.19 0.00 0.00 3.27
169 170 0.680618 TGGCCAGGCACAAAATTCAG 59.319 50.000 15.19 0.00 0.00 3.02
170 171 0.680618 CTGGCCAGGCACAAAATTCA 59.319 50.000 26.14 0.00 0.00 2.57
171 172 0.037046 CCTGGCCAGGCACAAAATTC 60.037 55.000 38.39 0.00 42.44 2.17
172 173 2.060370 CCTGGCCAGGCACAAAATT 58.940 52.632 38.39 0.00 42.44 1.82
173 174 3.795905 CCTGGCCAGGCACAAAAT 58.204 55.556 38.39 0.00 42.44 1.82
189 190 1.704007 AATGCTCTCCCAGGCTAGCC 61.704 60.000 27.19 27.19 33.99 3.93
190 191 0.534652 CAATGCTCTCCCAGGCTAGC 60.535 60.000 6.04 6.04 35.51 3.42
191 192 0.835941 ACAATGCTCTCCCAGGCTAG 59.164 55.000 0.00 0.00 0.00 3.42
192 193 1.289160 AACAATGCTCTCCCAGGCTA 58.711 50.000 0.00 0.00 0.00 3.93
193 194 0.407139 AAACAATGCTCTCCCAGGCT 59.593 50.000 0.00 0.00 0.00 4.58
194 195 0.529378 CAAACAATGCTCTCCCAGGC 59.471 55.000 0.00 0.00 0.00 4.85
195 196 1.180029 CCAAACAATGCTCTCCCAGG 58.820 55.000 0.00 0.00 0.00 4.45
196 197 1.915141 ACCAAACAATGCTCTCCCAG 58.085 50.000 0.00 0.00 0.00 4.45
197 198 1.962807 CAACCAAACAATGCTCTCCCA 59.037 47.619 0.00 0.00 0.00 4.37
198 199 1.273327 CCAACCAAACAATGCTCTCCC 59.727 52.381 0.00 0.00 0.00 4.30
199 200 1.963515 ACCAACCAAACAATGCTCTCC 59.036 47.619 0.00 0.00 0.00 3.71
200 201 2.288395 CCACCAACCAAACAATGCTCTC 60.288 50.000 0.00 0.00 0.00 3.20
201 202 1.688197 CCACCAACCAAACAATGCTCT 59.312 47.619 0.00 0.00 0.00 4.09
202 203 1.873486 GCCACCAACCAAACAATGCTC 60.873 52.381 0.00 0.00 0.00 4.26
203 204 0.106521 GCCACCAACCAAACAATGCT 59.893 50.000 0.00 0.00 0.00 3.79
204 205 0.884259 GGCCACCAACCAAACAATGC 60.884 55.000 0.00 0.00 0.00 3.56
205 206 0.758123 AGGCCACCAACCAAACAATG 59.242 50.000 5.01 0.00 0.00 2.82
206 207 1.140652 CAAGGCCACCAACCAAACAAT 59.859 47.619 5.01 0.00 0.00 2.71
207 208 0.539051 CAAGGCCACCAACCAAACAA 59.461 50.000 5.01 0.00 0.00 2.83
208 209 1.965754 GCAAGGCCACCAACCAAACA 61.966 55.000 5.01 0.00 0.00 2.83
209 210 1.227527 GCAAGGCCACCAACCAAAC 60.228 57.895 5.01 0.00 0.00 2.93
210 211 3.225235 GCAAGGCCACCAACCAAA 58.775 55.556 5.01 0.00 0.00 3.28
221 222 1.839424 AATACTTCACCAGGCAAGGC 58.161 50.000 4.14 0.00 0.00 4.35
222 223 4.162320 TCTCTAATACTTCACCAGGCAAGG 59.838 45.833 4.14 0.00 0.00 3.61
223 224 5.344743 TCTCTAATACTTCACCAGGCAAG 57.655 43.478 0.00 0.00 0.00 4.01
224 225 5.957771 ATCTCTAATACTTCACCAGGCAA 57.042 39.130 0.00 0.00 0.00 4.52
225 226 6.136857 ACTATCTCTAATACTTCACCAGGCA 58.863 40.000 0.00 0.00 0.00 4.75
226 227 6.658188 ACTATCTCTAATACTTCACCAGGC 57.342 41.667 0.00 0.00 0.00 4.85
253 254 9.391006 CCACACTAGTACAACATTTTACCATAT 57.609 33.333 0.00 0.00 0.00 1.78
254 255 8.595421 TCCACACTAGTACAACATTTTACCATA 58.405 33.333 0.00 0.00 0.00 2.74
255 256 7.455058 TCCACACTAGTACAACATTTTACCAT 58.545 34.615 0.00 0.00 0.00 3.55
256 257 6.828788 TCCACACTAGTACAACATTTTACCA 58.171 36.000 0.00 0.00 0.00 3.25
257 258 6.128363 GCTCCACACTAGTACAACATTTTACC 60.128 42.308 0.00 0.00 0.00 2.85
258 259 6.128363 GGCTCCACACTAGTACAACATTTTAC 60.128 42.308 0.00 0.00 0.00 2.01
259 260 5.935789 GGCTCCACACTAGTACAACATTTTA 59.064 40.000 0.00 0.00 0.00 1.52
260 261 4.760204 GGCTCCACACTAGTACAACATTTT 59.240 41.667 0.00 0.00 0.00 1.82
261 262 4.324267 GGCTCCACACTAGTACAACATTT 58.676 43.478 0.00 0.00 0.00 2.32
262 263 3.307480 GGGCTCCACACTAGTACAACATT 60.307 47.826 0.00 0.00 0.00 2.71
263 264 2.236395 GGGCTCCACACTAGTACAACAT 59.764 50.000 0.00 0.00 0.00 2.71
264 265 1.621814 GGGCTCCACACTAGTACAACA 59.378 52.381 0.00 0.00 0.00 3.33
265 266 1.621814 TGGGCTCCACACTAGTACAAC 59.378 52.381 0.00 0.00 0.00 3.32
266 267 2.018355 TGGGCTCCACACTAGTACAA 57.982 50.000 0.00 0.00 0.00 2.41
267 268 3.778250 TGGGCTCCACACTAGTACA 57.222 52.632 0.00 0.00 0.00 2.90
277 278 1.609239 GATGTGATGGTGGGCTCCA 59.391 57.895 4.67 4.67 42.01 3.86
278 279 1.152881 GGATGTGATGGTGGGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
279 280 0.034186 TTGGATGTGATGGTGGGCTC 60.034 55.000 0.00 0.00 0.00 4.70
280 281 0.409092 TTTGGATGTGATGGTGGGCT 59.591 50.000 0.00 0.00 0.00 5.19
281 282 1.488390 ATTTGGATGTGATGGTGGGC 58.512 50.000 0.00 0.00 0.00 5.36
282 283 6.975196 TTAATATTTGGATGTGATGGTGGG 57.025 37.500 0.00 0.00 0.00 4.61
300 301 9.284968 GCCTGGCTCTTGATTAGTAATTTAATA 57.715 33.333 12.43 0.00 0.00 0.98
301 302 7.779798 TGCCTGGCTCTTGATTAGTAATTTAAT 59.220 33.333 21.03 0.00 0.00 1.40
302 303 7.067008 GTGCCTGGCTCTTGATTAGTAATTTAA 59.933 37.037 21.03 0.00 0.00 1.52
303 304 6.542370 GTGCCTGGCTCTTGATTAGTAATTTA 59.458 38.462 21.03 0.00 0.00 1.40
304 305 5.358160 GTGCCTGGCTCTTGATTAGTAATTT 59.642 40.000 21.03 0.00 0.00 1.82
305 306 4.884164 GTGCCTGGCTCTTGATTAGTAATT 59.116 41.667 21.03 0.00 0.00 1.40
306 307 4.455606 GTGCCTGGCTCTTGATTAGTAAT 58.544 43.478 21.03 0.00 0.00 1.89
307 308 3.370527 GGTGCCTGGCTCTTGATTAGTAA 60.371 47.826 21.03 0.00 0.00 2.24
308 309 2.170607 GGTGCCTGGCTCTTGATTAGTA 59.829 50.000 21.03 0.00 0.00 1.82
309 310 1.065126 GGTGCCTGGCTCTTGATTAGT 60.065 52.381 21.03 0.00 0.00 2.24
310 311 1.673168 GGTGCCTGGCTCTTGATTAG 58.327 55.000 21.03 0.00 0.00 1.73
311 312 0.255890 GGGTGCCTGGCTCTTGATTA 59.744 55.000 21.03 0.00 0.00 1.75
312 313 1.000396 GGGTGCCTGGCTCTTGATT 60.000 57.895 21.03 0.00 0.00 2.57
313 314 2.207501 CTGGGTGCCTGGCTCTTGAT 62.208 60.000 21.03 0.00 0.00 2.57
314 315 2.853542 TGGGTGCCTGGCTCTTGA 60.854 61.111 21.03 0.00 0.00 3.02
315 316 2.360852 CTGGGTGCCTGGCTCTTG 60.361 66.667 21.03 6.96 0.00 3.02
316 317 2.530151 TCTGGGTGCCTGGCTCTT 60.530 61.111 21.03 0.00 0.00 2.85
317 318 3.325753 GTCTGGGTGCCTGGCTCT 61.326 66.667 21.03 0.00 0.00 4.09
318 319 4.767255 CGTCTGGGTGCCTGGCTC 62.767 72.222 21.03 16.47 0.00 4.70
321 322 4.394712 GGACGTCTGGGTGCCTGG 62.395 72.222 16.46 0.00 0.00 4.45
322 323 2.674563 TTTGGACGTCTGGGTGCCTG 62.675 60.000 16.46 0.00 0.00 4.85
323 324 1.990160 TTTTGGACGTCTGGGTGCCT 61.990 55.000 16.46 0.00 0.00 4.75
324 325 0.893727 ATTTTGGACGTCTGGGTGCC 60.894 55.000 16.46 0.00 0.00 5.01
325 326 1.737793 CTATTTTGGACGTCTGGGTGC 59.262 52.381 16.46 0.00 0.00 5.01
326 327 3.328382 TCTATTTTGGACGTCTGGGTG 57.672 47.619 16.46 0.78 0.00 4.61
327 328 3.263425 ACATCTATTTTGGACGTCTGGGT 59.737 43.478 16.46 1.11 0.00 4.51
328 329 3.871594 GACATCTATTTTGGACGTCTGGG 59.128 47.826 16.46 0.00 0.00 4.45
329 330 3.871594 GGACATCTATTTTGGACGTCTGG 59.128 47.826 16.46 0.00 0.00 3.86
330 331 4.568359 CAGGACATCTATTTTGGACGTCTG 59.432 45.833 16.46 4.80 0.00 3.51
331 332 4.466370 TCAGGACATCTATTTTGGACGTCT 59.534 41.667 16.46 0.00 0.00 4.18
332 333 4.755411 TCAGGACATCTATTTTGGACGTC 58.245 43.478 7.13 7.13 0.00 4.34
333 334 4.819105 TCAGGACATCTATTTTGGACGT 57.181 40.909 0.00 0.00 0.00 4.34
334 335 4.332819 GGTTCAGGACATCTATTTTGGACG 59.667 45.833 0.00 0.00 0.00 4.79
335 336 5.253330 TGGTTCAGGACATCTATTTTGGAC 58.747 41.667 0.00 0.00 0.00 4.02
336 337 5.500234 CTGGTTCAGGACATCTATTTTGGA 58.500 41.667 0.00 0.00 0.00 3.53
337 338 5.824904 CTGGTTCAGGACATCTATTTTGG 57.175 43.478 0.00 0.00 0.00 3.28
365 366 1.890174 GGTTTACCAGGCATGTGGC 59.110 57.895 2.30 0.00 41.90 5.01
366 367 0.608035 ACGGTTTACCAGGCATGTGG 60.608 55.000 0.00 0.85 44.01 4.17
367 368 0.802494 GACGGTTTACCAGGCATGTG 59.198 55.000 0.00 0.00 35.14 3.21
368 369 0.322187 GGACGGTTTACCAGGCATGT 60.322 55.000 0.00 0.00 35.14 3.21
369 370 0.322098 TGGACGGTTTACCAGGCATG 60.322 55.000 0.00 0.00 35.14 4.06
370 371 0.035439 CTGGACGGTTTACCAGGCAT 60.035 55.000 6.49 0.00 46.76 4.40
371 372 1.373435 CTGGACGGTTTACCAGGCA 59.627 57.895 6.49 0.00 46.76 4.75
372 373 4.296265 CTGGACGGTTTACCAGGC 57.704 61.111 6.49 0.00 46.76 4.85
375 376 1.350071 TTAGCCTGGACGGTTTACCA 58.650 50.000 0.00 0.00 35.14 3.25
376 377 2.093341 TGATTAGCCTGGACGGTTTACC 60.093 50.000 0.00 0.00 34.25 2.85
377 378 2.934553 GTGATTAGCCTGGACGGTTTAC 59.065 50.000 0.00 0.00 34.25 2.01
378 379 2.568062 TGTGATTAGCCTGGACGGTTTA 59.432 45.455 0.00 0.00 34.25 2.01
379 380 1.349688 TGTGATTAGCCTGGACGGTTT 59.650 47.619 0.00 0.00 34.25 3.27
380 381 0.981183 TGTGATTAGCCTGGACGGTT 59.019 50.000 0.00 0.00 34.25 4.44
381 382 0.537188 CTGTGATTAGCCTGGACGGT 59.463 55.000 0.00 0.00 34.25 4.83
382 383 0.537188 ACTGTGATTAGCCTGGACGG 59.463 55.000 0.00 0.00 0.00 4.79
383 384 2.165641 TGTACTGTGATTAGCCTGGACG 59.834 50.000 0.00 0.00 0.00 4.79
384 385 3.447586 TCTGTACTGTGATTAGCCTGGAC 59.552 47.826 0.00 0.00 0.00 4.02
385 386 3.708451 TCTGTACTGTGATTAGCCTGGA 58.292 45.455 0.00 0.00 0.00 3.86
386 387 4.100035 TCATCTGTACTGTGATTAGCCTGG 59.900 45.833 0.00 0.00 0.00 4.45
387 388 5.268118 TCATCTGTACTGTGATTAGCCTG 57.732 43.478 0.00 0.00 0.00 4.85
388 389 5.939764 TTCATCTGTACTGTGATTAGCCT 57.060 39.130 0.00 0.00 0.00 4.58
389 390 6.283694 TGATTCATCTGTACTGTGATTAGCC 58.716 40.000 0.00 0.00 0.00 3.93
390 391 6.423302 CCTGATTCATCTGTACTGTGATTAGC 59.577 42.308 0.00 0.00 0.00 3.09
391 392 6.423302 GCCTGATTCATCTGTACTGTGATTAG 59.577 42.308 0.00 1.14 0.00 1.73
392 393 6.283694 GCCTGATTCATCTGTACTGTGATTA 58.716 40.000 0.00 0.00 0.00 1.75
393 394 5.121811 GCCTGATTCATCTGTACTGTGATT 58.878 41.667 0.00 0.00 0.00 2.57
394 395 4.444022 GGCCTGATTCATCTGTACTGTGAT 60.444 45.833 0.00 0.00 0.00 3.06
395 396 3.118629 GGCCTGATTCATCTGTACTGTGA 60.119 47.826 0.00 0.00 0.00 3.58
396 397 3.201290 GGCCTGATTCATCTGTACTGTG 58.799 50.000 0.00 0.00 0.00 3.66
397 398 2.840038 TGGCCTGATTCATCTGTACTGT 59.160 45.455 3.32 0.00 0.00 3.55
398 399 3.133542 TCTGGCCTGATTCATCTGTACTG 59.866 47.826 8.48 0.00 0.00 2.74
399 400 3.133721 GTCTGGCCTGATTCATCTGTACT 59.866 47.826 16.12 0.00 0.00 2.73
400 401 3.118629 TGTCTGGCCTGATTCATCTGTAC 60.119 47.826 16.12 0.00 0.00 2.90
401 402 3.106827 TGTCTGGCCTGATTCATCTGTA 58.893 45.455 16.12 0.00 0.00 2.74
402 403 1.911357 TGTCTGGCCTGATTCATCTGT 59.089 47.619 16.12 0.00 0.00 3.41
403 404 2.286872 GTGTCTGGCCTGATTCATCTG 58.713 52.381 16.12 0.00 0.00 2.90
404 405 1.134580 CGTGTCTGGCCTGATTCATCT 60.135 52.381 16.12 0.00 0.00 2.90
405 406 1.293924 CGTGTCTGGCCTGATTCATC 58.706 55.000 16.12 2.97 0.00 2.92
406 407 0.745845 GCGTGTCTGGCCTGATTCAT 60.746 55.000 16.12 0.00 0.00 2.57
407 408 1.375908 GCGTGTCTGGCCTGATTCA 60.376 57.895 16.12 7.21 0.00 2.57
408 409 0.745845 ATGCGTGTCTGGCCTGATTC 60.746 55.000 16.12 10.61 0.00 2.52
409 410 1.028330 CATGCGTGTCTGGCCTGATT 61.028 55.000 16.12 0.00 0.00 2.57
410 411 1.450848 CATGCGTGTCTGGCCTGAT 60.451 57.895 16.12 0.00 0.00 2.90
411 412 2.046988 CATGCGTGTCTGGCCTGA 60.047 61.111 8.48 8.48 0.00 3.86
412 413 3.807538 GCATGCGTGTCTGGCCTG 61.808 66.667 0.00 2.92 0.00 4.85
423 424 1.444212 CCCTGGAAAAACGCATGCG 60.444 57.895 36.79 36.79 46.03 4.73
424 425 0.885196 TACCCTGGAAAAACGCATGC 59.115 50.000 7.91 7.91 0.00 4.06
425 426 1.135402 GCTACCCTGGAAAAACGCATG 60.135 52.381 0.00 0.00 0.00 4.06
426 427 1.173913 GCTACCCTGGAAAAACGCAT 58.826 50.000 0.00 0.00 0.00 4.73
427 428 0.179015 TGCTACCCTGGAAAAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
428 429 0.955905 TTGCTACCCTGGAAAAACGC 59.044 50.000 0.00 0.00 0.00 4.84
429 430 1.268625 GGTTGCTACCCTGGAAAAACG 59.731 52.381 5.98 0.00 38.60 3.60
430 431 2.312390 TGGTTGCTACCCTGGAAAAAC 58.688 47.619 15.00 0.00 44.35 2.43
431 432 2.757894 TGGTTGCTACCCTGGAAAAA 57.242 45.000 15.00 0.00 44.35 1.94
432 433 2.696187 GTTTGGTTGCTACCCTGGAAAA 59.304 45.455 15.00 5.37 44.35 2.29
433 434 2.312390 GTTTGGTTGCTACCCTGGAAA 58.688 47.619 15.00 5.73 44.35 3.13
434 435 1.215673 TGTTTGGTTGCTACCCTGGAA 59.784 47.619 15.00 0.00 44.35 3.53
435 436 0.847373 TGTTTGGTTGCTACCCTGGA 59.153 50.000 15.00 0.00 44.35 3.86
436 437 0.958822 GTGTTTGGTTGCTACCCTGG 59.041 55.000 15.00 0.00 44.35 4.45
437 438 1.336755 GTGTGTTTGGTTGCTACCCTG 59.663 52.381 15.00 0.00 44.35 4.45
438 439 1.214424 AGTGTGTTTGGTTGCTACCCT 59.786 47.619 15.00 0.00 44.35 4.34
439 440 1.687563 AGTGTGTTTGGTTGCTACCC 58.312 50.000 15.00 0.00 44.35 3.69
440 441 2.685897 TGAAGTGTGTTTGGTTGCTACC 59.314 45.455 10.70 10.70 45.26 3.18
441 442 3.243068 CCTGAAGTGTGTTTGGTTGCTAC 60.243 47.826 0.00 0.00 0.00 3.58
442 443 2.948979 CCTGAAGTGTGTTTGGTTGCTA 59.051 45.455 0.00 0.00 0.00 3.49
443 444 1.750778 CCTGAAGTGTGTTTGGTTGCT 59.249 47.619 0.00 0.00 0.00 3.91
444 445 1.802508 GCCTGAAGTGTGTTTGGTTGC 60.803 52.381 0.00 0.00 0.00 4.17
445 446 1.476085 TGCCTGAAGTGTGTTTGGTTG 59.524 47.619 0.00 0.00 0.00 3.77
446 447 1.846007 TGCCTGAAGTGTGTTTGGTT 58.154 45.000 0.00 0.00 0.00 3.67
447 448 1.846007 TTGCCTGAAGTGTGTTTGGT 58.154 45.000 0.00 0.00 0.00 3.67
448 449 3.457610 AATTGCCTGAAGTGTGTTTGG 57.542 42.857 0.00 0.00 0.00 3.28
449 450 4.869297 TGAAAATTGCCTGAAGTGTGTTTG 59.131 37.500 0.00 0.00 0.00 2.93
450 451 5.083533 TGAAAATTGCCTGAAGTGTGTTT 57.916 34.783 0.00 0.00 0.00 2.83
451 452 4.441913 CCTGAAAATTGCCTGAAGTGTGTT 60.442 41.667 0.00 0.00 0.00 3.32
452 453 3.068590 CCTGAAAATTGCCTGAAGTGTGT 59.931 43.478 0.00 0.00 0.00 3.72
453 454 3.645884 CCTGAAAATTGCCTGAAGTGTG 58.354 45.455 0.00 0.00 0.00 3.82
454 455 2.036346 GCCTGAAAATTGCCTGAAGTGT 59.964 45.455 0.00 0.00 0.00 3.55
455 456 2.036217 TGCCTGAAAATTGCCTGAAGTG 59.964 45.455 0.00 0.00 0.00 3.16
456 457 2.036346 GTGCCTGAAAATTGCCTGAAGT 59.964 45.455 0.00 0.00 0.00 3.01
457 458 2.680577 GTGCCTGAAAATTGCCTGAAG 58.319 47.619 0.00 0.00 0.00 3.02
458 459 1.000385 CGTGCCTGAAAATTGCCTGAA 60.000 47.619 0.00 0.00 0.00 3.02
459 460 0.597568 CGTGCCTGAAAATTGCCTGA 59.402 50.000 0.00 0.00 0.00 3.86
460 461 1.010419 GCGTGCCTGAAAATTGCCTG 61.010 55.000 0.00 0.00 0.00 4.85
461 462 1.181098 AGCGTGCCTGAAAATTGCCT 61.181 50.000 0.00 0.00 0.00 4.75
462 463 0.733909 GAGCGTGCCTGAAAATTGCC 60.734 55.000 0.00 0.00 0.00 4.52
463 464 0.733909 GGAGCGTGCCTGAAAATTGC 60.734 55.000 0.00 0.00 0.00 3.56
464 465 0.597568 TGGAGCGTGCCTGAAAATTG 59.402 50.000 0.00 0.00 0.00 2.32
465 466 0.883833 CTGGAGCGTGCCTGAAAATT 59.116 50.000 0.00 0.00 0.00 1.82
466 467 0.962356 CCTGGAGCGTGCCTGAAAAT 60.962 55.000 0.00 0.00 0.00 1.82
467 468 1.600636 CCTGGAGCGTGCCTGAAAA 60.601 57.895 0.00 0.00 0.00 2.29
468 469 2.032528 CCTGGAGCGTGCCTGAAA 59.967 61.111 0.00 0.00 0.00 2.69
469 470 4.704833 GCCTGGAGCGTGCCTGAA 62.705 66.667 0.00 0.00 0.00 3.02
475 476 3.390521 TACCTGGCCTGGAGCGTG 61.391 66.667 33.43 7.69 45.17 5.34
476 477 3.391382 GTACCTGGCCTGGAGCGT 61.391 66.667 33.43 14.67 45.17 5.07
477 478 2.185310 AAAGTACCTGGCCTGGAGCG 62.185 60.000 33.43 8.81 45.17 5.03
478 479 0.393132 GAAAGTACCTGGCCTGGAGC 60.393 60.000 33.43 23.21 42.60 4.70
479 480 1.065854 CAGAAAGTACCTGGCCTGGAG 60.066 57.143 33.43 8.78 0.00 3.86
480 481 0.984230 CAGAAAGTACCTGGCCTGGA 59.016 55.000 33.43 15.19 0.00 3.86
481 482 0.035056 CCAGAAAGTACCTGGCCTGG 60.035 60.000 26.14 26.14 43.93 4.45
482 483 3.558674 CCAGAAAGTACCTGGCCTG 57.441 57.895 3.32 2.54 43.93 4.85
487 488 0.035056 CCCTGGCCAGAAAGTACCTG 60.035 60.000 34.91 13.46 0.00 4.00
488 489 1.853250 GCCCTGGCCAGAAAGTACCT 61.853 60.000 34.91 0.00 34.56 3.08
489 490 1.378646 GCCCTGGCCAGAAAGTACC 60.379 63.158 34.91 9.59 34.56 3.34
490 491 0.034089 ATGCCCTGGCCAGAAAGTAC 60.034 55.000 34.91 15.72 41.09 2.73
491 492 0.034186 CATGCCCTGGCCAGAAAGTA 60.034 55.000 34.91 20.80 41.09 2.24
492 493 1.304713 CATGCCCTGGCCAGAAAGT 60.305 57.895 34.91 14.23 41.09 2.66
493 494 0.396695 ATCATGCCCTGGCCAGAAAG 60.397 55.000 34.91 21.95 41.09 2.62
494 495 0.396139 GATCATGCCCTGGCCAGAAA 60.396 55.000 34.91 18.70 41.09 2.52
495 496 1.228228 GATCATGCCCTGGCCAGAA 59.772 57.895 34.91 19.08 41.09 3.02
496 497 2.760378 GGATCATGCCCTGGCCAGA 61.760 63.158 34.91 15.33 41.09 3.86
497 498 2.203451 GGATCATGCCCTGGCCAG 60.203 66.667 26.87 26.87 41.09 4.85
498 499 2.165643 TTTGGATCATGCCCTGGCCA 62.166 55.000 4.71 4.71 41.09 5.36
499 500 1.381599 TTTGGATCATGCCCTGGCC 60.382 57.895 5.57 0.00 41.09 5.36
500 501 0.685458 AGTTTGGATCATGCCCTGGC 60.685 55.000 0.00 0.00 42.35 4.85
501 502 1.396653 GAGTTTGGATCATGCCCTGG 58.603 55.000 0.00 0.00 0.00 4.45
502 503 1.019673 CGAGTTTGGATCATGCCCTG 58.980 55.000 0.00 0.00 0.00 4.45
503 504 0.749454 GCGAGTTTGGATCATGCCCT 60.749 55.000 0.00 0.00 0.00 5.19
504 505 0.749454 AGCGAGTTTGGATCATGCCC 60.749 55.000 0.00 0.00 0.00 5.36
505 506 0.659957 GAGCGAGTTTGGATCATGCC 59.340 55.000 0.00 0.00 0.00 4.40
506 507 1.329906 CAGAGCGAGTTTGGATCATGC 59.670 52.381 0.00 0.00 0.00 4.06
507 508 2.625737 ACAGAGCGAGTTTGGATCATG 58.374 47.619 0.00 0.00 0.00 3.07
508 509 4.100035 TGATACAGAGCGAGTTTGGATCAT 59.900 41.667 0.00 0.00 37.28 2.45
509 510 3.447229 TGATACAGAGCGAGTTTGGATCA 59.553 43.478 0.00 0.89 39.28 2.92
510 511 3.799420 GTGATACAGAGCGAGTTTGGATC 59.201 47.826 0.00 0.00 33.63 3.36
511 512 3.430929 GGTGATACAGAGCGAGTTTGGAT 60.431 47.826 0.00 0.00 0.00 3.41
512 513 2.094182 GGTGATACAGAGCGAGTTTGGA 60.094 50.000 0.00 0.00 0.00 3.53
513 514 2.271800 GGTGATACAGAGCGAGTTTGG 58.728 52.381 0.00 0.00 0.00 3.28
514 515 2.271800 GGGTGATACAGAGCGAGTTTG 58.728 52.381 0.00 0.00 0.00 2.93
515 516 1.135083 CGGGTGATACAGAGCGAGTTT 60.135 52.381 0.00 0.00 0.00 2.66
516 517 0.456221 CGGGTGATACAGAGCGAGTT 59.544 55.000 0.00 0.00 0.00 3.01
517 518 0.393944 TCGGGTGATACAGAGCGAGT 60.394 55.000 0.00 0.00 0.00 4.18
518 519 0.955178 ATCGGGTGATACAGAGCGAG 59.045 55.000 0.00 0.00 31.44 5.03
519 520 2.265589 TATCGGGTGATACAGAGCGA 57.734 50.000 0.00 0.00 35.99 4.93
520 521 3.057526 TGAATATCGGGTGATACAGAGCG 60.058 47.826 0.00 0.00 39.81 5.03
521 522 4.238514 GTGAATATCGGGTGATACAGAGC 58.761 47.826 0.00 0.00 39.81 4.09
522 523 4.322049 GGGTGAATATCGGGTGATACAGAG 60.322 50.000 0.00 0.00 39.81 3.35
523 524 3.576982 GGGTGAATATCGGGTGATACAGA 59.423 47.826 0.00 0.00 39.81 3.41
524 525 3.578716 AGGGTGAATATCGGGTGATACAG 59.421 47.826 0.00 0.00 39.81 2.74
525 526 3.576982 GAGGGTGAATATCGGGTGATACA 59.423 47.826 0.00 0.00 39.81 2.29
562 563 2.124236 AGCGTCGGAGGGTAGAGG 60.124 66.667 0.00 0.00 0.00 3.69
566 567 1.890979 GATCGAGCGTCGGAGGGTA 60.891 63.158 2.02 0.00 40.88 3.69
729 730 7.016563 TGCTACATATAAGGTGAGGTCATCATT 59.983 37.037 0.00 0.00 40.92 2.57
764 765 1.067199 GTTAGGTGTCGGCGTACGTG 61.067 60.000 17.90 10.15 44.69 4.49
880 894 2.196749 CGAGTTCGTTGGATCTGGATG 58.803 52.381 0.00 0.00 34.11 3.51
963 978 2.982488 GGGGATGAGTGGGAGAATATGT 59.018 50.000 0.00 0.00 0.00 2.29
968 983 0.687757 CTCGGGGATGAGTGGGAGAA 60.688 60.000 0.00 0.00 0.00 2.87
980 995 0.686769 GCCTCCTAACTTCTCGGGGA 60.687 60.000 0.00 0.00 0.00 4.81
1075 1102 2.685380 CCTCAGCCGTTCCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
1293 1320 1.541310 TTCGTCAGTGAAGGCCGGAT 61.541 55.000 5.05 0.00 0.00 4.18
1427 1456 3.642778 CTACGCTCCACCACCACGG 62.643 68.421 0.00 0.00 42.50 4.94
1439 1468 5.649395 TGTACAGTACATCCTAAACTACGCT 59.351 40.000 9.51 0.00 32.89 5.07
1497 1535 7.444629 AGAGATTCGTAGTACTACACAAACA 57.555 36.000 28.03 8.93 35.87 2.83
1724 1763 5.915857 TGAAAGTCGAACAATTCAATCGAG 58.084 37.500 6.92 0.00 45.19 4.04
1840 1879 3.998099 TCTCTCGACCAGAATATGCTG 57.002 47.619 3.37 3.37 35.66 4.41
1841 1880 4.798924 GCAATCTCTCGACCAGAATATGCT 60.799 45.833 13.13 0.00 0.00 3.79
1842 1881 3.431572 GCAATCTCTCGACCAGAATATGC 59.568 47.826 8.47 8.47 0.00 3.14
1931 1970 4.650754 AGAATTCCGTAACAGAGCGTAT 57.349 40.909 0.65 0.00 0.00 3.06
1934 1973 3.250744 TGAAGAATTCCGTAACAGAGCG 58.749 45.455 0.65 0.00 46.93 5.03
1937 1976 6.928979 TTGTTTGAAGAATTCCGTAACAGA 57.071 33.333 0.65 0.00 46.93 3.41
1957 2159 7.063898 CAGTGTCATCTAGTCGATTCAAATTGT 59.936 37.037 0.00 0.00 0.00 2.71
1978 2180 2.034305 ACGTCTCGTTTTCTAGCAGTGT 59.966 45.455 0.00 0.00 36.35 3.55
1983 2185 2.404361 GTCACACGTCTCGTTTTCTAGC 59.596 50.000 0.00 0.00 38.32 3.42
2051 2253 3.249320 GTGTTGGTCCGAAGTTTCCTTAC 59.751 47.826 0.00 0.00 0.00 2.34
2187 2393 3.091545 TCAGGATGAAAAGTTCCATGCC 58.908 45.455 6.23 0.00 45.97 4.40
2253 2459 2.639347 TCTTGGTTTCTGAGGAGCATGA 59.361 45.455 0.00 6.73 0.00 3.07
2262 2468 3.563808 CGTGGAATTGTCTTGGTTTCTGA 59.436 43.478 0.00 0.00 0.00 3.27
2289 2495 0.534203 ACACTTCCGCGTTCATGGTT 60.534 50.000 4.92 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.