>input_sequence_84294
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------------------------------------------------------ATGGCGAGGAAGGCA---GC------
---AGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGAGGGAGGAACGGCTGAGGC
GGGAGCTGGAGGCAGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTG
GAGGCCGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGG
CCTGCTCAGGTCCTCCGGCCTCCACAGCGGCGTCGTGCAATCCGGCCTTCACTGA-------------------------
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>chr1B_1_TraesCS1B01G201100
AAAAACATGTGTTGTGAACATTTACAAAAAAAAAGAATTTTTTAAAATATTTAAGTTTAATATTTCAAGTTGGTATCATG
GGAGCATGTAAGGGATTGTGGGCCAGTTTGGTTTGTGTCCTGGGCAATGTGCCTGGAGAATTTTGATGCCTGGGATGTGC
CTGAAAAGTCTGAATTTTGTGCCTGGCCAGGCTAGCCTGGGAGAGCATTGTTTGGTTGGTGGCCTTGCCTGGTGAAGTAT
TAGAGATAGTTTTATATGGTAAAATGTTGTACTAGTGTGGAGCCCACCATCACATCCAAATATTAAATTACTAATCAAGA
GCCAGGCACCCAGACGTCCAAAATAGATGTCCTGAACCAGGCTAAGCCACATGCCTGGTAAACCGTCCAGGCTAATCACA
GTACAGATGAATCAGGCCAGACACGCATGCGTTTTTCCAGGGTAGCAACCAAACACACTTCAGGCAATTTTCAGGCACGC
TCCAGGCCAGGTACTTTCTGGCCAGGGCATGATCCAAACTCGCTCTGTATCACCCGATATTCACCCTCGTATGTCTCTCC
AACCTCTACCCTCCGACGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAAGCAAAAGTTGTGGTTGCTGGTGTTTG
ACTATCCATCCGCCCACCACGTTCACCTCTCAACCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATCGAA
TTATCAACGAATGATGACCTCACCTTATATGTAGCAGCGCTGTACACGTACGCCGACACCTAACGTGCCCGATTGGTTCA
TTGAACCTGGACACATTCCCGCTTTCCCTCGGCAGCTGCAGC---------CGGCCCGGCCTATATAAAAGGCGCCACAA
CCTGA----GAGGCATCCAGAT-CCAACGAACTCGTAAACACGTCTGTCTATAGTGTACGCATTCTCCTCAAAGAAAAAA
AAAGGTCTATAGTGTACACATATTCTCCCACTCATCCCCGAGAAGTTAGGAGGCATGGCGAGGAAGGCA---GC------
---AGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGAGGGAGGAACGGCTGAGGC
GGGAGCTGGAGGCAGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTG
GAGGCCGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGG
CCTGCTCAGGTCCTCCGGCCTCCACAGCGGCGTCGTGCAATCCGGCCTTCACTGACGAACCGAATCTCATCATGCGTTTC
CTTGCTTATTACTACTATTATGTGCGATTATGCAAGGCTGTACCTGTACGGGTTTCTAAAT--TTTCCGCCGGCGTGTGT
TTGATGCCAACTCGTCCGTGGTGGTGGAGC---GTAGTTTAGGATGTACTGTACATTTTTCTTCTTCTTGATGAGATGT-
-----ATATAATGTTGTTTGTGTAGTACTACGAATCTCTT-GGAGGACATCTAAATGTTGCCCCCGATCTGATGCAAACT
TGAGCTGACGCATGCATTCATCTAATATCACACGCAACGGATTCCTTGACAACGATCGAGCTTATGTGCATATAAAACGA
GATGATCACGAGCCATATCCATTGGCGCAGAGTGCGTCGCGCTGGAGGACGACCCACAGGACGTTCGTTCTCTAAATTTT
CCCTCGATTGAATTGTTCGACTTTCAGGTTTCACCATCCTTACGAGCAGTCAGTTCCCAGGGGAAGCCGATGTTTCGGTG
TTCTTGACAAGTTCCTGGTTTCTTCTTGCGGGTGCGGCCAGCATATTCTGGTCGAGAGATTGCTGACCACGTTGCCAAGC
TGTGAGCTGCCAACAGTTATACTATAGCAAGGAATTCTACTTGCAATGCATACGCTCTGTTACGGAATTC----------
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------------------------------------------------------------------------TTC-AAAC
AATTTGAATCGACTAGATGACACTGCTAGAAAACGAGACGTGTGACGCCACACAGAAAACGACCGCACCAGCTGCTCAAT
TAAGCAACAAAAGTA-AGGAAACTTCGGACCAACACCAT---ACAGCACAAAGTTGACTGATATAATGCAATTGGAAATA
GTAATGGCAAATCAGGGACCTCGGATATTTGACAGCAGCACGCATGTAATGAAAAAGAGAGGTATGAAATGGGGCATGGA
ACTTTTCATCCTGAAAAAATGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGTCATGCTCCTCAGAAACCAAGA
CAATTCCACGGAATAACCATGAACGCGGAAGTGT
>chr1D_527
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----------------------------------------------GTATCACTCAATATTCACCCTCATATATCTCTCC
AATCTCCACCCTCCGGCGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAAGCAAAAGTTGTGGTTGCTGGTGTTTG
ACTATCCAGCCGCCCACCACGTTCACCTCTCAGCCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATCGAA
TTATCAACG-ATGATGACCTCACCTTATATGTAGCAGCGCTGTAGACGTACGCCGACACCTAACGTGCCCGATTGGTTCA
TTGAACCTGGACACATTCCCGCTTTCCCTCCGCAGCTGCAGC---------CGGCCCGGCCTATATAAAAGGCGCCACAA
CCTGA----GAGGGATCCAGAT-CCAACGAACTCGTGAACACGTCTGTCTATAGTGTACGCATCCTCCTCAAAGAAA-AA
AAAGGTCTATAGTGTACGCATACTCTCCCACTCACACCCGAGAAGTTAGGAGGCATGGCGAGGAAGGCA---GCGGCAGC
GGCAGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGCGGGAGGAGCGGCTGCGGC
GGGAGCTGGAGGCGGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTG
GAGGCGGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGG
CCTGCTCAGGTCCTCCGGCCTCCACAGCGCCGTCGTGCAGTCCGGCCTTCACTGACGAACCGAATCTCACCATCCGTTTC
CTTGCTTATTACTACTATTATGTGCGATCATGCAAGGCTGTACCTGTACGGGTTCCTAAAT--TTTCCGCCGGCGTGTGT
TTGATGCCAACTCGTGCGTGGTGGTGGTGGAGCGTAGCGTAGGATGTACTGTACATTTTTCTTCTTCTTGATGAGATGTA
GGAGTATATAATGTCGTTTGTGTGGTACTACGAATATCTTGGGAGGACATCGAAATGTTGCCCCCGATCTGATGCAAACT
TGAGCTGACGCATGCATTCATCTAATATCACACGCAGCGGATTCCTTGACAACGATCGAGCTTATGTGCATATAAAACGA
GATGATCACGAGCCAGATCCATTGGCGCAGAGTGCGTCGCGCTGGAGGACGACCCACAGGACGTTCGTTCTCTAAATTTT
CCTTCGATTGAATTGTTCGACTTTCAGGTTTCACCATCCTTACGAGCAGCCAGTTCCCAGGGGAAGCCGATGTTTCGGTG
TTCTTGACAAGTTCCTGGTTTCTCCTTGCCGCCAA------CATATTCTGGTCGAGAGATTGCTGACCACGTTGCCAAGC
TGTGTGCTGCCAACAGTTATACTATAGCAAGGAATTCTACTCGCAACGCGTATGCCCTGCTACGGAGTTC----------
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------------------------------------------------------------------------TTCAAATC
AATTTGGATCGATTAGATGGCACTACTGGAAAACGAGACGTCTGACGCCACACAGAAAACGACCGCACGAGCTGCTCAAT
TAAGCAACAAAAATA-AGGAAACTTCGGACCAACATCAT---ACAGCGCAAAGTTGACTGATATAATGCAATTGGAAATA
GTAATGGCAAATCAGGGACCTCGGATATTTGACAGCAGCACGCATGTAATGAAAAAGAGAGGTATGAAATGGAGCATGGA
ACTTTTGACCCTGAAAAATTGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGCCATACTCTCCAGAAACGAAAA
CAATTCCACGGAATTACCATGGACGCGGAAGTGT
>chr1A_527
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----------------------------------------------GTATCGCCCGATATTCACCCTCGTCTGTCTCTCC
AATCCCCACTCTCCGACGCTCGATCGAACGGCCAGAATGTGCTAGACAAATCAGGCAAAAGTTGTGGTTGCTGGTGTTTG
ACTATCCATCCGCCCACCACGTTCACCTCTCAACCAGGAGGAAATGCAATAAGAGAGAGACGTACGGGCAAAGCATTGAA
TTATCAACG-ATGATGACCTCACCTTATATGTAGCAGCTCTGTAGGCGTACGCCGACACCTAACGTGCCCGATTGGTTCA
TTGAACCTGGACACATTCCCGCTTTCCCTCCGCGGCGGCAGCCGGCCCGAGCGGCCCGGCCTATATAAAAGGCGCCACAA
CCTGATCAAGAGAGATCCAGATCCCAGCGAACTCGTAAACACGTCTGTGCATAGTGCTAT--------------------
--------------TACGTATACTCCCCCACTCACCCCCGAGAAGTCAGGAGGCATGGCGAGGAAGGCAGCGGC------
---AGCGGCCATGGACGGCAAGAGCTCCGAGCTCGCGAGGGCCGTGGCGGAGGCGGAGGCGCGGGAGGAGCGGCTGCAGC
GGGAGCTGGAGGCGGCGCTGGCGCGGGTGGCCGTGGCGGAGGAGGCCGAGGAGCGGCTGTGCGTGCAGCTCGGCGAGCTG
GAGGCGGAGGCCATGACGCAGGCCATGGAGTACCAGCAGCACGTCAGGGCGCTCTCCGAGAGGCTCGCCCTCATGGACGG
CCTGCTCAGGTCCTCCGGCCTCCACGGCGCCGTCGTGCAGCCCGGCCTTCACTGACGAACCGAATCTCATCATGCGTTCC
CTTGCCTGT------TATTATGTGTGATCATGCAAGGCTGTAGTGGTTGTTAAATTTTTCTCCTTTCCGCCGGCGTGTGT
TTGATGCCAACTCGTGCGTGCTGGTGGCGT---GTAGTGTAGGATGTACATTTCTTTTCTTTTCTTTTTGAGATGTACT-
---GTATATAACGTCGTTTGTGTAGTTCTACATATCTCTT--GAGAACATCTTAATGTTGCCCCCGATCTGTTGCAAACT
TGAGCTGACGTATGCATTCACCTAATATCACACGCAACGGATTCCTTGACAACGATCGAGCGCATGTGCATATATACATG
AGGAGCACACGCAAATGAGGTTCTTGATATGAAGACATAAAGAAATGAACTGGTCCCACATATAAATTCGAAAAATTACC
AGTGCTATCCCAAGTTCTCAACTCCATTAA--------------------------------------------------
------------------TCTTTCCTTCCCGCGAA------AAAATAACTCCATTAATCTTGCTTCAACTCCGTAACAAA
GCATAAAGCATATGCATTACGAGTAAAATTCCTTGACAAGCTATAATTGTTGGCGGCACACCGCGTGGCAACTGGTCATC
AATCTCCCGACCAAAACTAATAATGTTGGCAACAAAGGCGGCAAGGAAAAACCATGAACCAGTCAAAAACACCGAAAACA
TCCGTTTCACCTCGGAAATTTCGGCCGAAACTGACTTCTCGTAAGGATGATGAAACTTGGAAGTCTGAACAATTC-AATC
AATTTGAATCACCTAGACAGCACTACTAGAAACA-AGACGTGTGACACCACGCAGAAAACGACCGCACCAGCTGCTCAAT
TAAAAAAGAAATATATAGGAAACTTCGGACCTCGGCTATTTGACAGCACAAAGTTGACTGGTTTAATGCAATTGGAAATT
GCAATGGCAAATCAGGGACCTCGGACATTTGACAGTAGCATGCATGGA--------------------------CATGGA
ACTTTTCATCCTGAAAT-TTGTCAATCTTCCAGATAGCTGACTGGAGGTGTGAAATGGCCATGCTCCCCAGAAACCAAGA
CAATTCCACGGAATTACCGTGAACGCGGAAGTGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
--S---S-------------------------------------------------------------------------
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---------S----------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
-------------S-------------------------------------------------S-------------S--
-----------------S----S-----------S---------------------------------------------
-------------------------------------------------------------S-------S------S---
-------------S------------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------------S---------S----------------------------------------
----------------------------S---------------------------------------------------
---------------S-----------S-S--------S-----------------------------------------
--------------S-----------------------------------------------------------------
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--S----------------------------------------------S------------------------------
-----------------------S-----S-SSSSSSSSSS---------------------------------------
-------------------------------------------------S--S--S---S------S-------------
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------------------------------------------------------------------------------S-
-------------------S----S-------------------------------------------------------
------------S-------------------------------------------------------------------
------------------------------------------------------------------------S-------
------------------S---------------------------------------S--------S------------
--------------S-------------------
>forward_240
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------------------------------------------------------------GGCCTTGCCTGGTGAAGTAT
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>reverse_2495
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--------------AACCATGAACGCGGAAGTGT
