Multiple sequence alignment - TraesCS1B01G198800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G198800 chr1B 100.000 3313 0 0 1 3313 356946715 356950027 0.000000e+00 6119
1 TraesCS1B01G198800 chr1B 94.286 385 19 1 2328 2709 688755 688371 1.320000e-163 586
2 TraesCS1B01G198800 chr1B 78.396 449 81 12 2840 3278 638017690 638018132 9.050000e-71 278
3 TraesCS1B01G198800 chr1B 77.629 447 80 14 2842 3268 668508665 668508219 1.530000e-63 254
4 TraesCS1B01G198800 chr1D 93.776 1703 79 14 608 2297 256114204 256112516 0.000000e+00 2532
5 TraesCS1B01G198800 chr1D 96.429 448 14 2 1 447 256114648 256114202 0.000000e+00 737
6 TraesCS1B01G198800 chr1D 91.818 110 6 1 2725 2834 256112441 256112335 2.060000e-32 150
7 TraesCS1B01G198800 chr1A 93.632 1696 87 11 608 2297 328842708 328841028 0.000000e+00 2514
8 TraesCS1B01G198800 chr1A 81.419 592 81 14 2725 3302 328840953 328840377 1.080000e-124 457
9 TraesCS1B01G198800 chr1A 92.364 275 13 1 181 447 328842980 328842706 5.190000e-103 385
10 TraesCS1B01G198800 chr1A 87.895 190 20 2 4 193 328844645 328844459 1.550000e-53 220
11 TraesCS1B01G198800 chr4D 81.777 1114 140 24 1113 2193 476321069 476319986 0.000000e+00 874
12 TraesCS1B01G198800 chr4D 79.254 429 72 8 2900 3313 477906938 477906512 1.950000e-72 283
13 TraesCS1B01G198800 chr4D 83.521 267 36 6 2839 3098 385521161 385521426 3.300000e-60 243
14 TraesCS1B01G198800 chr4D 76.923 455 82 17 2880 3313 95500096 95500548 1.540000e-58 237
15 TraesCS1B01G198800 chr4D 81.911 293 36 13 678 959 476321470 476321184 7.150000e-57 231
16 TraesCS1B01G198800 chr4B 81.167 1131 141 38 1113 2205 600874689 600873593 0.000000e+00 843
17 TraesCS1B01G198800 chr4B 95.745 376 12 2 2332 2704 519346614 519346988 1.320000e-168 603
18 TraesCS1B01G198800 chr4B 94.531 384 16 2 2332 2710 546672139 546671756 3.680000e-164 588
19 TraesCS1B01G198800 chr4B 79.458 443 54 16 644 1061 600875123 600874693 2.520000e-71 279
20 TraesCS1B01G198800 chr4B 76.303 422 88 9 2900 3313 380675733 380675316 7.200000e-52 215
21 TraesCS1B01G198800 chr4A 80.279 1146 154 32 1113 2214 683536513 683535396 0.000000e+00 798
22 TraesCS1B01G198800 chr4A 93.814 388 20 2 2332 2716 646276306 646275920 6.160000e-162 580
23 TraesCS1B01G198800 chr4A 95.906 171 7 0 446 616 47105637 47105467 9.050000e-71 278
24 TraesCS1B01G198800 chr4A 95.294 170 7 1 441 610 605375698 605375866 5.450000e-68 268
25 TraesCS1B01G198800 chr4A 78.604 444 61 20 644 1061 683536952 683536517 2.540000e-66 263
26 TraesCS1B01G198800 chr3B 95.538 381 13 2 2332 2709 790170101 790170480 1.020000e-169 606
27 TraesCS1B01G198800 chr3B 94.832 387 16 2 2328 2710 981163 981549 4.730000e-168 601
28 TraesCS1B01G198800 chr3B 95.026 382 16 1 2332 2710 134310036 134310417 6.120000e-167 597
29 TraesCS1B01G198800 chr3B 79.339 484 78 13 2850 3313 775734328 775734809 1.480000e-83 320
30 TraesCS1B01G198800 chr3B 95.858 169 6 1 442 610 719093385 719093552 4.210000e-69 272
31 TraesCS1B01G198800 chr3B 76.715 481 87 12 2844 3313 25909799 25909333 9.180000e-61 244
32 TraesCS1B01G198800 chr3B 76.349 482 88 13 2844 3313 26304026 26303559 5.530000e-58 235
33 TraesCS1B01G198800 chr3B 76.141 482 89 13 2844 3313 25873306 25872839 2.570000e-56 230
34 TraesCS1B01G198800 chr3B 75.569 483 91 13 2844 3313 26006355 26005887 2.590000e-51 213
35 TraesCS1B01G198800 chr2A 94.751 381 17 1 2332 2709 765014624 765015004 1.020000e-164 590
36 TraesCS1B01G198800 chr2A 96.386 166 6 0 445 610 488846469 488846634 1.170000e-69 274
37 TraesCS1B01G198800 chr7A 94.503 382 18 2 2332 2710 670538205 670537824 1.320000e-163 586
38 TraesCS1B01G198800 chr7A 77.236 492 88 19 2842 3313 731101133 731101620 1.960000e-67 267
39 TraesCS1B01G198800 chr5D 78.119 489 81 20 2849 3313 40767415 40767901 1.500000e-73 287
40 TraesCS1B01G198800 chr5D 79.157 427 75 9 2900 3313 332072860 332073285 1.950000e-72 283
41 TraesCS1B01G198800 chr2D 79.353 402 75 4 2900 3298 152102705 152102309 3.260000e-70 276
42 TraesCS1B01G198800 chrUn 95.882 170 6 1 441 610 48205993 48205825 1.170000e-69 274
43 TraesCS1B01G198800 chrUn 96.364 165 6 0 446 610 82595755 82595919 4.210000e-69 272
44 TraesCS1B01G198800 chrUn 94.253 174 10 0 446 619 358047667 358047494 1.960000e-67 267
45 TraesCS1B01G198800 chrUn 76.409 479 90 7 2842 3298 12317342 12317819 1.540000e-58 237
46 TraesCS1B01G198800 chr3A 95.808 167 7 0 444 610 639156955 639157121 1.520000e-68 270
47 TraesCS1B01G198800 chr5B 93.714 175 11 0 437 611 217679043 217679217 2.540000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G198800 chr1B 356946715 356950027 3312 False 6119.000000 6119 100.000000 1 3313 1 chr1B.!!$F1 3312
1 TraesCS1B01G198800 chr1D 256112335 256114648 2313 True 1139.666667 2532 94.007667 1 2834 3 chr1D.!!$R1 2833
2 TraesCS1B01G198800 chr1A 328840377 328844645 4268 True 894.000000 2514 88.827500 4 3302 4 chr1A.!!$R1 3298
3 TraesCS1B01G198800 chr4D 476319986 476321470 1484 True 552.500000 874 81.844000 678 2193 2 chr4D.!!$R2 1515
4 TraesCS1B01G198800 chr4B 600873593 600875123 1530 True 561.000000 843 80.312500 644 2205 2 chr4B.!!$R3 1561
5 TraesCS1B01G198800 chr4A 683535396 683536952 1556 True 530.500000 798 79.441500 644 2214 2 chr4A.!!$R3 1570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
642 2141 0.110486 GGCCTGTCTTCCCTGTTCAA 59.89 55.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 4226 0.238817 TTCGGAACAAAAATCCCGCG 59.761 50.0 0.0 0.0 41.55 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.532868 CTGCTAAATGACATAGCCCGC 59.467 52.381 7.57 0.00 44.08 6.13
225 1716 5.863935 GGCATTCAACTAGTTCCATGAAAAC 59.136 40.000 20.72 12.09 35.62 2.43
245 1736 6.986424 AAACGCTTAAAAATGAAGTACTGC 57.014 33.333 0.00 0.00 0.00 4.40
336 1827 8.835439 AGCACACAAAGAAAAAGAAAAGAAAAA 58.165 25.926 0.00 0.00 0.00 1.94
378 1877 6.373779 CACACAACAACCTTATCATCTCAAC 58.626 40.000 0.00 0.00 0.00 3.18
447 1946 5.346822 CCGGTGTGTCTTACTTGTAATGTAC 59.653 44.000 0.00 0.00 0.00 2.90
448 1947 6.154445 CGGTGTGTCTTACTTGTAATGTACT 58.846 40.000 0.00 0.00 0.00 2.73
449 1948 6.307318 CGGTGTGTCTTACTTGTAATGTACTC 59.693 42.308 0.00 0.00 0.00 2.59
450 1949 6.589139 GGTGTGTCTTACTTGTAATGTACTCC 59.411 42.308 0.00 0.00 0.00 3.85
451 1950 6.589139 GTGTGTCTTACTTGTAATGTACTCCC 59.411 42.308 0.00 0.00 0.00 4.30
452 1951 6.495872 TGTGTCTTACTTGTAATGTACTCCCT 59.504 38.462 0.00 0.00 0.00 4.20
453 1952 7.034397 GTGTCTTACTTGTAATGTACTCCCTC 58.966 42.308 0.00 0.00 0.00 4.30
454 1953 6.154021 TGTCTTACTTGTAATGTACTCCCTCC 59.846 42.308 0.00 0.00 0.00 4.30
455 1954 5.359009 TCTTACTTGTAATGTACTCCCTCCG 59.641 44.000 0.00 0.00 0.00 4.63
456 1955 3.438183 ACTTGTAATGTACTCCCTCCGT 58.562 45.455 0.00 0.00 0.00 4.69
457 1956 3.836562 ACTTGTAATGTACTCCCTCCGTT 59.163 43.478 0.00 0.00 0.00 4.44
458 1957 4.285260 ACTTGTAATGTACTCCCTCCGTTT 59.715 41.667 0.00 0.00 0.00 3.60
459 1958 4.895668 TGTAATGTACTCCCTCCGTTTT 57.104 40.909 0.00 0.00 0.00 2.43
460 1959 5.231702 TGTAATGTACTCCCTCCGTTTTT 57.768 39.130 0.00 0.00 0.00 1.94
461 1960 6.357579 TGTAATGTACTCCCTCCGTTTTTA 57.642 37.500 0.00 0.00 0.00 1.52
462 1961 6.767456 TGTAATGTACTCCCTCCGTTTTTAA 58.233 36.000 0.00 0.00 0.00 1.52
463 1962 7.222872 TGTAATGTACTCCCTCCGTTTTTAAA 58.777 34.615 0.00 0.00 0.00 1.52
464 1963 7.884354 TGTAATGTACTCCCTCCGTTTTTAAAT 59.116 33.333 0.00 0.00 0.00 1.40
465 1964 9.382275 GTAATGTACTCCCTCCGTTTTTAAATA 57.618 33.333 0.00 0.00 0.00 1.40
466 1965 8.866970 AATGTACTCCCTCCGTTTTTAAATAA 57.133 30.769 0.00 0.00 0.00 1.40
467 1966 9.470399 AATGTACTCCCTCCGTTTTTAAATAAT 57.530 29.630 0.00 0.00 0.00 1.28
468 1967 8.866970 TGTACTCCCTCCGTTTTTAAATAATT 57.133 30.769 0.00 0.00 0.00 1.40
469 1968 8.732531 TGTACTCCCTCCGTTTTTAAATAATTG 58.267 33.333 0.00 0.00 0.00 2.32
470 1969 7.770366 ACTCCCTCCGTTTTTAAATAATTGT 57.230 32.000 0.00 0.00 0.00 2.71
471 1970 7.823665 ACTCCCTCCGTTTTTAAATAATTGTC 58.176 34.615 0.00 0.00 0.00 3.18
472 1971 7.668469 ACTCCCTCCGTTTTTAAATAATTGTCT 59.332 33.333 0.00 0.00 0.00 3.41
473 1972 8.411991 TCCCTCCGTTTTTAAATAATTGTCTT 57.588 30.769 0.00 0.00 0.00 3.01
474 1973 8.862085 TCCCTCCGTTTTTAAATAATTGTCTTT 58.138 29.630 0.00 0.00 0.00 2.52
475 1974 9.135843 CCCTCCGTTTTTAAATAATTGTCTTTC 57.864 33.333 0.00 0.00 0.00 2.62
476 1975 9.908152 CCTCCGTTTTTAAATAATTGTCTTTCT 57.092 29.630 0.00 0.00 0.00 2.52
508 2007 8.710835 TTCAATAAATGACTACATACGAAGCA 57.289 30.769 0.00 0.00 37.92 3.91
509 2008 8.710835 TCAATAAATGACTACATACGAAGCAA 57.289 30.769 0.00 0.00 35.50 3.91
510 2009 9.157104 TCAATAAATGACTACATACGAAGCAAA 57.843 29.630 0.00 0.00 35.50 3.68
511 2010 9.767684 CAATAAATGACTACATACGAAGCAAAA 57.232 29.630 0.00 0.00 35.50 2.44
513 2012 9.935682 ATAAATGACTACATACGAAGCAAAATG 57.064 29.630 0.00 0.00 35.50 2.32
514 2013 7.609760 AATGACTACATACGAAGCAAAATGA 57.390 32.000 0.00 0.00 35.50 2.57
515 2014 6.647212 TGACTACATACGAAGCAAAATGAG 57.353 37.500 0.00 0.00 0.00 2.90
516 2015 6.163476 TGACTACATACGAAGCAAAATGAGT 58.837 36.000 0.00 0.00 0.00 3.41
517 2016 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
518 2017 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
519 2018 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
520 2019 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
521 2020 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
522 2021 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
523 2022 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
524 2023 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
525 2024 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
526 2025 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
539 2038 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
540 2039 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
541 2040 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
542 2041 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
543 2042 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
549 2048 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
550 2049 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
551 2050 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
552 2051 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
553 2052 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
554 2053 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
570 2069 8.780846 ACATCCGTATGTTGTAGTTTATTTGA 57.219 30.769 0.00 0.00 44.07 2.69
571 2070 8.879759 ACATCCGTATGTTGTAGTTTATTTGAG 58.120 33.333 0.00 0.00 44.07 3.02
572 2071 9.093970 CATCCGTATGTTGTAGTTTATTTGAGA 57.906 33.333 0.00 0.00 0.00 3.27
573 2072 9.832445 ATCCGTATGTTGTAGTTTATTTGAGAT 57.168 29.630 0.00 0.00 0.00 2.75
600 2099 9.099454 AGCTAGAAAGACAATTATTTAGGAACG 57.901 33.333 0.00 0.00 0.00 3.95
601 2100 8.336080 GCTAGAAAGACAATTATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
602 2101 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
603 2102 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
604 2103 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
605 2104 6.555463 AGACAATTATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
606 2105 6.954232 AGACAATTATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
607 2106 7.048512 AGACAATTATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
608 2107 6.718294 ACAATTATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
609 2108 7.854337 ACAATTATTTAGGAACGGAGGAAGTA 58.146 34.615 0.00 0.00 0.00 2.24
615 2114 4.408182 AGGAACGGAGGAAGTAATGATG 57.592 45.455 0.00 0.00 0.00 3.07
623 2122 5.005779 CGGAGGAAGTAATGATGAAGAAACG 59.994 44.000 0.00 0.00 0.00 3.60
630 2129 1.808411 TGATGAAGAAACGGCCTGTC 58.192 50.000 0.00 0.00 0.00 3.51
641 2140 1.761174 GGCCTGTCTTCCCTGTTCA 59.239 57.895 0.00 0.00 0.00 3.18
642 2141 0.110486 GGCCTGTCTTCCCTGTTCAA 59.890 55.000 0.00 0.00 0.00 2.69
667 2166 2.035066 GGCATGTCACTGTCTGCTTTTT 59.965 45.455 0.00 0.00 35.03 1.94
788 2287 3.319755 CACCTCCATCACAAAATTGCAC 58.680 45.455 0.00 0.00 0.00 4.57
797 2296 1.067199 CAAAATTGCACGCTCCGAGC 61.067 55.000 10.59 10.59 43.12 5.03
826 2325 4.392921 TCCCAAGAAATGTTGCGAAAAA 57.607 36.364 0.00 0.00 0.00 1.94
1055 2582 6.734137 TGTGTGTTTGAGATACATGAAAACC 58.266 36.000 0.00 0.00 31.71 3.27
1077 2604 6.071984 ACCTGATAATACTAGCAGCAGTAGT 58.928 40.000 0.00 2.89 39.73 2.73
1099 2626 2.170607 AGCACCAGTTGTCTAGTTGTGT 59.829 45.455 0.00 0.00 0.00 3.72
1107 2634 7.387948 ACCAGTTGTCTAGTTGTGTATTTGATC 59.612 37.037 0.00 0.00 0.00 2.92
1109 2636 7.116376 CAGTTGTCTAGTTGTGTATTTGATCGT 59.884 37.037 0.00 0.00 0.00 3.73
1121 2648 3.558931 TTTGATCGTACCATGGAGCAT 57.441 42.857 21.47 4.26 0.00 3.79
1652 3224 4.873129 GCGGCGAGCAGGATCGAA 62.873 66.667 12.98 0.00 45.56 3.71
1752 3324 1.133025 CGCCAAATTTGAATCTCGGCT 59.867 47.619 19.86 0.00 35.89 5.52
1754 3326 2.792542 GCCAAATTTGAATCTCGGCTCG 60.793 50.000 19.86 0.00 35.17 5.03
1769 3341 2.661537 TCGTCACAAGTGGCAGCG 60.662 61.111 5.59 3.91 34.22 5.18
1859 3431 0.034059 CTCCCGTCAAAGTCAGCTGT 59.966 55.000 14.67 0.00 0.00 4.40
1934 3509 3.640498 TCGAGATCAAGAGCCTCATGATT 59.360 43.478 13.21 4.56 35.26 2.57
2247 3836 4.820897 TCTGCTCGTGTGTCTATGAATTT 58.179 39.130 0.00 0.00 0.00 1.82
2286 3879 5.741964 GCGGGTGTCTATGAATTCCATCTTA 60.742 44.000 2.27 0.00 36.71 2.10
2322 3930 1.327507 GCCGAAGTGAATGAAAACGC 58.672 50.000 0.00 0.00 0.00 4.84
2328 3936 3.822594 AGTGAATGAAAACGCGCATAA 57.177 38.095 5.73 0.00 0.00 1.90
2329 3937 4.153958 AGTGAATGAAAACGCGCATAAA 57.846 36.364 5.73 0.00 0.00 1.40
2330 3938 4.158384 AGTGAATGAAAACGCGCATAAAG 58.842 39.130 5.73 0.00 0.00 1.85
2331 3939 3.300590 GTGAATGAAAACGCGCATAAAGG 59.699 43.478 5.73 0.00 0.00 3.11
2332 3940 3.189495 TGAATGAAAACGCGCATAAAGGA 59.811 39.130 5.73 0.00 0.00 3.36
2333 3941 2.892373 TGAAAACGCGCATAAAGGAG 57.108 45.000 5.73 0.00 0.00 3.69
2334 3942 2.418692 TGAAAACGCGCATAAAGGAGA 58.581 42.857 5.73 0.00 0.00 3.71
2335 3943 2.415168 TGAAAACGCGCATAAAGGAGAG 59.585 45.455 5.73 0.00 0.00 3.20
2336 3944 0.727398 AAACGCGCATAAAGGAGAGC 59.273 50.000 5.73 0.00 0.00 4.09
2339 3947 3.324035 CGCATAAAGGAGAGCGGC 58.676 61.111 0.00 0.00 45.83 6.53
2340 3948 2.589492 CGCATAAAGGAGAGCGGCG 61.589 63.158 0.51 0.51 45.83 6.46
2341 3949 1.521681 GCATAAAGGAGAGCGGCGT 60.522 57.895 9.37 0.00 0.00 5.68
2343 3951 1.369625 CATAAAGGAGAGCGGCGTTT 58.630 50.000 9.37 2.17 0.00 3.60
2344 3952 1.737793 CATAAAGGAGAGCGGCGTTTT 59.262 47.619 9.37 0.00 0.00 2.43
2345 3953 1.153353 TAAAGGAGAGCGGCGTTTTG 58.847 50.000 9.37 0.00 0.00 2.44
2346 3954 1.515521 AAAGGAGAGCGGCGTTTTGG 61.516 55.000 9.37 0.00 0.00 3.28
2347 3955 4.103103 GGAGAGCGGCGTTTTGGC 62.103 66.667 9.37 0.00 40.44 4.52
2348 3956 3.050275 GAGAGCGGCGTTTTGGCT 61.050 61.111 9.37 0.00 42.02 4.75
2350 3958 4.103103 GAGCGGCGTTTTGGCTCC 62.103 66.667 9.37 0.00 45.67 4.70
2351 3959 4.643387 AGCGGCGTTTTGGCTCCT 62.643 61.111 9.37 0.00 42.02 3.69
2352 3960 2.744709 GCGGCGTTTTGGCTCCTA 60.745 61.111 9.37 0.00 42.02 2.94
2353 3961 2.750888 GCGGCGTTTTGGCTCCTAG 61.751 63.158 9.37 0.00 42.02 3.02
2355 3963 1.002502 GGCGTTTTGGCTCCTAGGT 60.003 57.895 9.08 0.00 40.72 3.08
2356 3964 1.305930 GGCGTTTTGGCTCCTAGGTG 61.306 60.000 9.08 7.68 40.72 4.00
2357 3965 1.923227 GCGTTTTGGCTCCTAGGTGC 61.923 60.000 24.68 24.68 0.00 5.01
2358 3966 0.605319 CGTTTTGGCTCCTAGGTGCA 60.605 55.000 31.19 17.76 36.47 4.57
2359 3967 1.839424 GTTTTGGCTCCTAGGTGCAT 58.161 50.000 31.19 0.00 36.47 3.96
2360 3968 2.679639 CGTTTTGGCTCCTAGGTGCATA 60.680 50.000 31.19 19.50 36.47 3.14
2361 3969 3.555966 GTTTTGGCTCCTAGGTGCATAT 58.444 45.455 31.19 0.00 36.47 1.78
2362 3970 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
2363 3971 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
2364 3972 0.322008 GGCTCCTAGGTGCATATGCC 60.322 60.000 31.19 18.74 41.18 4.40
2365 3973 0.397941 GCTCCTAGGTGCATATGCCA 59.602 55.000 27.04 10.22 41.18 4.92
2366 3974 1.004044 GCTCCTAGGTGCATATGCCAT 59.996 52.381 27.04 15.42 41.18 4.40
2367 3975 2.553904 GCTCCTAGGTGCATATGCCATT 60.554 50.000 27.04 11.96 41.18 3.16
2368 3976 3.079578 CTCCTAGGTGCATATGCCATTG 58.920 50.000 24.54 13.58 41.18 2.82
2369 3977 2.442878 TCCTAGGTGCATATGCCATTGT 59.557 45.455 24.54 7.67 41.18 2.71
2370 3978 2.816087 CCTAGGTGCATATGCCATTGTC 59.184 50.000 24.54 7.86 41.18 3.18
2371 3979 1.311859 AGGTGCATATGCCATTGTCG 58.688 50.000 24.54 0.00 41.18 4.35
2372 3980 1.134128 AGGTGCATATGCCATTGTCGA 60.134 47.619 24.54 0.28 41.18 4.20
2373 3981 1.675483 GGTGCATATGCCATTGTCGAA 59.325 47.619 24.54 0.00 41.18 3.71
2374 3982 2.098934 GGTGCATATGCCATTGTCGAAA 59.901 45.455 24.54 0.00 41.18 3.46
2375 3983 3.243501 GGTGCATATGCCATTGTCGAAAT 60.244 43.478 24.54 0.00 41.18 2.17
2376 3984 4.023279 GGTGCATATGCCATTGTCGAAATA 60.023 41.667 24.54 0.00 41.18 1.40
2377 3985 4.911610 GTGCATATGCCATTGTCGAAATAC 59.088 41.667 24.54 7.64 41.18 1.89
2378 3986 4.578105 TGCATATGCCATTGTCGAAATACA 59.422 37.500 24.54 0.00 41.18 2.29
2379 3987 4.911610 GCATATGCCATTGTCGAAATACAC 59.088 41.667 17.26 0.00 34.31 2.90
2380 3988 5.505489 GCATATGCCATTGTCGAAATACACA 60.505 40.000 17.26 0.00 34.31 3.72
2381 3989 6.671190 CATATGCCATTGTCGAAATACACAT 58.329 36.000 0.00 0.00 0.00 3.21
2382 3990 5.581126 ATGCCATTGTCGAAATACACATT 57.419 34.783 0.00 0.00 0.00 2.71
2383 3991 5.384063 TGCCATTGTCGAAATACACATTT 57.616 34.783 0.00 0.00 37.06 2.32
2384 3992 5.398169 TGCCATTGTCGAAATACACATTTC 58.602 37.500 0.00 0.92 44.44 2.17
2417 4025 9.487790 TTGAATAATTCAGAACAAAAATCCCAC 57.512 29.630 0.00 0.00 41.38 4.61
2418 4026 7.812191 TGAATAATTCAGAACAAAAATCCCACG 59.188 33.333 0.00 0.00 34.08 4.94
2419 4027 5.529581 AATTCAGAACAAAAATCCCACGT 57.470 34.783 0.00 0.00 0.00 4.49
2420 4028 3.980646 TCAGAACAAAAATCCCACGTG 57.019 42.857 9.08 9.08 0.00 4.49
2421 4029 3.283751 TCAGAACAAAAATCCCACGTGT 58.716 40.909 15.65 0.00 0.00 4.49
2422 4030 4.452825 TCAGAACAAAAATCCCACGTGTA 58.547 39.130 15.65 2.16 0.00 2.90
2423 4031 5.067273 TCAGAACAAAAATCCCACGTGTAT 58.933 37.500 15.65 4.75 0.00 2.29
2424 4032 6.231951 TCAGAACAAAAATCCCACGTGTATA 58.768 36.000 15.65 0.00 0.00 1.47
2425 4033 6.882140 TCAGAACAAAAATCCCACGTGTATAT 59.118 34.615 15.65 1.65 0.00 0.86
2426 4034 7.065324 TCAGAACAAAAATCCCACGTGTATATC 59.935 37.037 15.65 0.00 0.00 1.63
2427 4035 6.317893 AGAACAAAAATCCCACGTGTATATCC 59.682 38.462 15.65 0.00 0.00 2.59
2428 4036 4.573201 ACAAAAATCCCACGTGTATATCCG 59.427 41.667 15.65 0.00 0.00 4.18
2429 4037 3.396260 AAATCCCACGTGTATATCCGG 57.604 47.619 15.65 6.61 0.00 5.14
2430 4038 2.297698 ATCCCACGTGTATATCCGGA 57.702 50.000 15.65 6.61 0.00 5.14
2431 4039 1.321474 TCCCACGTGTATATCCGGAC 58.679 55.000 15.65 0.00 0.00 4.79
2432 4040 1.034356 CCCACGTGTATATCCGGACA 58.966 55.000 15.65 0.00 0.00 4.02
2433 4041 1.616865 CCCACGTGTATATCCGGACAT 59.383 52.381 15.65 2.01 0.00 3.06
2434 4042 2.036733 CCCACGTGTATATCCGGACATT 59.963 50.000 15.65 0.00 0.00 2.71
2435 4043 3.493699 CCCACGTGTATATCCGGACATTT 60.494 47.826 15.65 0.00 0.00 2.32
2436 4044 4.124238 CCACGTGTATATCCGGACATTTT 58.876 43.478 15.65 0.00 0.00 1.82
2437 4045 5.291178 CCACGTGTATATCCGGACATTTTA 58.709 41.667 15.65 0.00 0.00 1.52
2438 4046 5.929992 CCACGTGTATATCCGGACATTTTAT 59.070 40.000 15.65 2.53 0.00 1.40
2439 4047 6.128661 CCACGTGTATATCCGGACATTTTATG 60.129 42.308 15.65 0.00 0.00 1.90
2441 4049 6.422701 ACGTGTATATCCGGACATTTTATGTG 59.577 38.462 6.12 0.00 45.03 3.21
2442 4050 6.599437 GTGTATATCCGGACATTTTATGTGC 58.401 40.000 6.12 0.00 45.03 4.57
2457 4065 3.142796 GTGCGTTCACAAGGTTTCG 57.857 52.632 0.00 0.00 42.66 3.46
2458 4066 0.653636 GTGCGTTCACAAGGTTTCGA 59.346 50.000 0.00 0.00 42.66 3.71
2459 4067 1.263217 GTGCGTTCACAAGGTTTCGAT 59.737 47.619 0.00 0.00 42.66 3.59
2460 4068 1.262950 TGCGTTCACAAGGTTTCGATG 59.737 47.619 0.00 0.00 0.00 3.84
2461 4069 1.529438 GCGTTCACAAGGTTTCGATGA 59.471 47.619 0.00 0.00 0.00 2.92
2462 4070 2.032377 GCGTTCACAAGGTTTCGATGAA 60.032 45.455 0.00 0.00 0.00 2.57
2463 4071 3.547214 GCGTTCACAAGGTTTCGATGAAA 60.547 43.478 0.00 0.00 31.45 2.69
2464 4072 4.593157 CGTTCACAAGGTTTCGATGAAAA 58.407 39.130 0.00 0.00 33.14 2.29
2465 4073 5.031578 CGTTCACAAGGTTTCGATGAAAAA 58.968 37.500 0.00 0.00 33.14 1.94
2466 4074 5.052633 CGTTCACAAGGTTTCGATGAAAAAC 60.053 40.000 0.00 0.00 33.14 2.43
2467 4075 4.593157 TCACAAGGTTTCGATGAAAAACG 58.407 39.130 0.00 0.00 37.46 3.60
2468 4076 4.333095 TCACAAGGTTTCGATGAAAAACGA 59.667 37.500 0.00 0.00 37.46 3.85
2469 4077 4.436523 CACAAGGTTTCGATGAAAAACGAC 59.563 41.667 0.00 0.00 37.46 4.34
2470 4078 3.515071 AGGTTTCGATGAAAAACGACG 57.485 42.857 0.00 0.00 37.46 5.12
2471 4079 2.867975 AGGTTTCGATGAAAAACGACGT 59.132 40.909 0.00 0.00 37.46 4.34
2472 4080 3.310501 AGGTTTCGATGAAAAACGACGTT 59.689 39.130 7.57 7.57 37.46 3.99
2473 4081 4.030366 GGTTTCGATGAAAAACGACGTTT 58.970 39.130 19.83 19.83 37.46 3.60
2474 4082 4.496539 GGTTTCGATGAAAAACGACGTTTT 59.503 37.500 28.19 28.19 45.94 2.43
2513 4121 6.817765 AAAAGATAAAGAAATGCCTCGTCA 57.182 33.333 0.00 0.00 0.00 4.35
2514 4122 6.817765 AAAGATAAAGAAATGCCTCGTCAA 57.182 33.333 0.00 0.00 0.00 3.18
2515 4123 7.396540 AAAGATAAAGAAATGCCTCGTCAAT 57.603 32.000 0.00 0.00 0.00 2.57
2516 4124 8.506168 AAAGATAAAGAAATGCCTCGTCAATA 57.494 30.769 0.00 0.00 0.00 1.90
2517 4125 7.721286 AGATAAAGAAATGCCTCGTCAATAG 57.279 36.000 0.00 0.00 0.00 1.73
2518 4126 7.275920 AGATAAAGAAATGCCTCGTCAATAGT 58.724 34.615 0.00 0.00 0.00 2.12
2519 4127 7.770897 AGATAAAGAAATGCCTCGTCAATAGTT 59.229 33.333 0.00 0.00 0.00 2.24
2520 4128 8.958119 ATAAAGAAATGCCTCGTCAATAGTTA 57.042 30.769 0.00 0.00 0.00 2.24
2521 4129 6.910536 AAGAAATGCCTCGTCAATAGTTAG 57.089 37.500 0.00 0.00 0.00 2.34
2522 4130 6.222038 AGAAATGCCTCGTCAATAGTTAGA 57.778 37.500 0.00 0.00 0.00 2.10
2523 4131 6.640518 AGAAATGCCTCGTCAATAGTTAGAA 58.359 36.000 0.00 0.00 0.00 2.10
2524 4132 7.275920 AGAAATGCCTCGTCAATAGTTAGAAT 58.724 34.615 0.00 0.00 0.00 2.40
2525 4133 6.851222 AATGCCTCGTCAATAGTTAGAATG 57.149 37.500 0.00 0.00 0.00 2.67
2526 4134 5.592104 TGCCTCGTCAATAGTTAGAATGA 57.408 39.130 0.00 0.00 0.00 2.57
2527 4135 5.972935 TGCCTCGTCAATAGTTAGAATGAA 58.027 37.500 0.00 0.00 0.00 2.57
2528 4136 6.042777 TGCCTCGTCAATAGTTAGAATGAAG 58.957 40.000 0.00 0.00 0.00 3.02
2529 4137 5.050702 GCCTCGTCAATAGTTAGAATGAAGC 60.051 44.000 0.00 0.00 0.00 3.86
2530 4138 6.042777 CCTCGTCAATAGTTAGAATGAAGCA 58.957 40.000 0.00 0.00 0.00 3.91
2531 4139 6.703607 CCTCGTCAATAGTTAGAATGAAGCAT 59.296 38.462 0.00 0.00 0.00 3.79
2532 4140 7.095857 CCTCGTCAATAGTTAGAATGAAGCATC 60.096 40.741 0.00 0.00 0.00 3.91
2533 4141 7.264947 TCGTCAATAGTTAGAATGAAGCATCA 58.735 34.615 0.00 0.00 40.57 3.07
2534 4142 7.436376 TCGTCAATAGTTAGAATGAAGCATCAG 59.564 37.037 0.00 0.00 39.39 2.90
2535 4143 7.436376 CGTCAATAGTTAGAATGAAGCATCAGA 59.564 37.037 0.00 0.00 39.39 3.27
2536 4144 9.102757 GTCAATAGTTAGAATGAAGCATCAGAA 57.897 33.333 0.00 0.00 39.39 3.02
2537 4145 9.671279 TCAATAGTTAGAATGAAGCATCAGAAA 57.329 29.630 0.00 0.00 39.39 2.52
2541 4149 8.345724 AGTTAGAATGAAGCATCAGAAATTGT 57.654 30.769 0.00 0.00 39.39 2.71
2542 4150 8.457261 AGTTAGAATGAAGCATCAGAAATTGTC 58.543 33.333 0.00 0.00 39.39 3.18
2543 4151 8.457261 GTTAGAATGAAGCATCAGAAATTGTCT 58.543 33.333 0.00 0.00 39.39 3.41
2544 4152 7.463961 AGAATGAAGCATCAGAAATTGTCTT 57.536 32.000 0.00 0.00 39.39 3.01
2545 4153 7.893658 AGAATGAAGCATCAGAAATTGTCTTT 58.106 30.769 0.00 0.00 39.39 2.52
2546 4154 8.365647 AGAATGAAGCATCAGAAATTGTCTTTT 58.634 29.630 0.00 0.00 39.39 2.27
2547 4155 8.897872 AATGAAGCATCAGAAATTGTCTTTTT 57.102 26.923 0.00 0.00 39.39 1.94
2593 4201 6.089920 GTTTTTCACTAAAACCTTGTGCAC 57.910 37.500 10.75 10.75 46.40 4.57
2594 4202 3.684103 TTCACTAAAACCTTGTGCACG 57.316 42.857 13.13 0.00 0.00 5.34
2595 4203 1.332375 TCACTAAAACCTTGTGCACGC 59.668 47.619 13.13 0.00 0.00 5.34
2596 4204 1.064803 CACTAAAACCTTGTGCACGCA 59.935 47.619 13.13 0.00 0.00 5.24
2597 4205 1.064952 ACTAAAACCTTGTGCACGCAC 59.935 47.619 15.20 15.20 46.33 5.34
2608 4216 2.250188 GTGCACGCACATAAAATGTCC 58.750 47.619 17.03 0.00 45.53 4.02
2616 4224 5.854157 CGCACATAAAATGTCCGGATATAC 58.146 41.667 14.71 0.00 40.59 1.47
2617 4225 5.407084 CGCACATAAAATGTCCGGATATACA 59.593 40.000 14.71 5.01 40.59 2.29
2618 4226 6.599437 GCACATAAAATGTCCGGATATACAC 58.401 40.000 14.71 0.00 42.70 2.90
2619 4227 6.617741 GCACATAAAATGTCCGGATATACACG 60.618 42.308 14.71 5.24 42.70 4.49
2620 4228 5.407387 ACATAAAATGTCCGGATATACACGC 59.593 40.000 14.71 0.00 39.92 5.34
2621 4229 2.060326 AATGTCCGGATATACACGCG 57.940 50.000 14.71 3.53 0.00 6.01
2622 4230 0.242825 ATGTCCGGATATACACGCGG 59.757 55.000 12.63 1.27 0.00 6.46
2623 4231 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
2624 4232 1.228215 TCCGGATATACACGCGGGA 60.228 57.895 19.19 2.35 0.00 5.14
2625 4233 0.609957 TCCGGATATACACGCGGGAT 60.610 55.000 19.19 6.43 0.00 3.85
2626 4234 0.245539 CCGGATATACACGCGGGATT 59.754 55.000 19.19 3.73 0.00 3.01
2627 4235 1.337447 CCGGATATACACGCGGGATTT 60.337 52.381 19.19 0.61 0.00 2.17
2628 4236 2.409975 CGGATATACACGCGGGATTTT 58.590 47.619 19.19 0.00 0.00 1.82
2629 4237 2.803956 CGGATATACACGCGGGATTTTT 59.196 45.455 19.19 0.00 0.00 1.94
2630 4238 3.363575 CGGATATACACGCGGGATTTTTG 60.364 47.826 19.19 1.15 0.00 2.44
2631 4239 3.562557 GGATATACACGCGGGATTTTTGT 59.437 43.478 19.19 8.67 0.00 2.83
2632 4240 4.035909 GGATATACACGCGGGATTTTTGTT 59.964 41.667 19.19 0.00 0.00 2.83
2633 4241 2.973419 TACACGCGGGATTTTTGTTC 57.027 45.000 19.19 0.00 0.00 3.18
2634 4242 0.312729 ACACGCGGGATTTTTGTTCC 59.687 50.000 19.19 0.00 0.00 3.62
2635 4243 0.727793 CACGCGGGATTTTTGTTCCG 60.728 55.000 12.47 0.00 44.70 4.30
2636 4244 0.885596 ACGCGGGATTTTTGTTCCGA 60.886 50.000 12.47 0.00 44.69 4.55
2637 4245 0.238817 CGCGGGATTTTTGTTCCGAA 59.761 50.000 0.00 0.00 44.69 4.30
2638 4246 1.135517 CGCGGGATTTTTGTTCCGAAT 60.136 47.619 0.00 0.00 44.69 3.34
2639 4247 2.669950 CGCGGGATTTTTGTTCCGAATT 60.670 45.455 0.00 0.00 44.69 2.17
2640 4248 3.322369 GCGGGATTTTTGTTCCGAATTT 58.678 40.909 4.71 0.00 44.69 1.82
2641 4249 3.743911 GCGGGATTTTTGTTCCGAATTTT 59.256 39.130 4.71 0.00 44.69 1.82
2642 4250 4.212425 GCGGGATTTTTGTTCCGAATTTTT 59.788 37.500 4.71 0.00 44.69 1.94
2669 4277 8.918961 AACTTTTCAAAATGTGTATTTCGACA 57.081 26.923 0.00 0.00 35.50 4.35
2670 4278 8.918961 ACTTTTCAAAATGTGTATTTCGACAA 57.081 26.923 0.00 0.00 35.50 3.18
2671 4279 9.528018 ACTTTTCAAAATGTGTATTTCGACAAT 57.472 25.926 0.00 0.00 35.50 2.71
2672 4280 9.782028 CTTTTCAAAATGTGTATTTCGACAATG 57.218 29.630 0.00 0.00 35.50 2.82
2673 4281 7.865875 TTCAAAATGTGTATTTCGACAATGG 57.134 32.000 0.00 0.00 35.50 3.16
2674 4282 6.385843 TCAAAATGTGTATTTCGACAATGGG 58.614 36.000 0.00 0.00 35.50 4.00
2675 4283 5.975693 AAATGTGTATTTCGACAATGGGT 57.024 34.783 0.00 0.00 30.85 4.51
2676 4284 4.963276 ATGTGTATTTCGACAATGGGTG 57.037 40.909 0.00 0.00 0.00 4.61
2677 4285 2.486203 TGTGTATTTCGACAATGGGTGC 59.514 45.455 0.00 0.00 0.00 5.01
2678 4286 2.486203 GTGTATTTCGACAATGGGTGCA 59.514 45.455 0.00 0.00 0.00 4.57
2679 4287 3.128589 GTGTATTTCGACAATGGGTGCAT 59.871 43.478 0.00 0.00 0.00 3.96
2680 4288 4.334203 GTGTATTTCGACAATGGGTGCATA 59.666 41.667 0.00 0.00 0.00 3.14
2681 4289 5.008613 GTGTATTTCGACAATGGGTGCATAT 59.991 40.000 0.00 0.00 0.00 1.78
2682 4290 4.572985 ATTTCGACAATGGGTGCATATG 57.427 40.909 0.00 0.00 0.00 1.78
2683 4291 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
2694 4302 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
2695 4303 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
2696 4304 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
2697 4305 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
2698 4306 3.759581 CATATGCACCTAGGAGCCAAAT 58.240 45.455 25.94 16.18 0.00 2.32
2699 4307 2.062971 ATGCACCTAGGAGCCAAATG 57.937 50.000 25.94 8.69 0.00 2.32
2700 4308 0.680921 TGCACCTAGGAGCCAAATGC 60.681 55.000 25.94 18.04 41.71 3.56
2701 4309 0.680921 GCACCTAGGAGCCAAATGCA 60.681 55.000 19.57 0.00 44.83 3.96
2702 4310 1.838112 CACCTAGGAGCCAAATGCAA 58.162 50.000 17.98 0.00 44.83 4.08
2703 4311 2.381911 CACCTAGGAGCCAAATGCAAT 58.618 47.619 17.98 0.00 44.83 3.56
2704 4312 2.762327 CACCTAGGAGCCAAATGCAATT 59.238 45.455 17.98 0.00 44.83 2.32
2705 4313 3.953612 CACCTAGGAGCCAAATGCAATTA 59.046 43.478 17.98 0.00 44.83 1.40
2706 4314 3.954258 ACCTAGGAGCCAAATGCAATTAC 59.046 43.478 17.98 0.00 44.83 1.89
2707 4315 3.319122 CCTAGGAGCCAAATGCAATTACC 59.681 47.826 1.05 0.00 44.83 2.85
2708 4316 1.750778 AGGAGCCAAATGCAATTACCG 59.249 47.619 0.00 0.00 44.83 4.02
2709 4317 1.559831 GAGCCAAATGCAATTACCGC 58.440 50.000 0.00 0.00 44.83 5.68
2710 4318 0.179140 AGCCAAATGCAATTACCGCG 60.179 50.000 0.00 0.00 44.83 6.46
2711 4319 1.751536 GCCAAATGCAATTACCGCGC 61.752 55.000 0.00 0.00 33.67 6.86
2712 4320 0.457509 CCAAATGCAATTACCGCGCA 60.458 50.000 8.75 0.00 33.67 6.09
2714 4322 2.542618 CCAAATGCAATTACCGCGCATA 60.543 45.455 8.75 0.00 45.33 3.14
2715 4323 3.111838 CAAATGCAATTACCGCGCATAA 58.888 40.909 8.75 5.82 45.33 1.90
2716 4324 3.428746 AATGCAATTACCGCGCATAAA 57.571 38.095 8.75 0.00 45.33 1.40
2717 4325 2.466870 TGCAATTACCGCGCATAAAG 57.533 45.000 8.75 4.27 0.00 1.85
2718 4326 1.740585 TGCAATTACCGCGCATAAAGT 59.259 42.857 8.75 0.00 0.00 2.66
2719 4327 2.162608 TGCAATTACCGCGCATAAAGTT 59.837 40.909 8.75 0.00 0.00 2.66
2720 4328 2.529894 GCAATTACCGCGCATAAAGTTG 59.470 45.455 8.75 8.95 0.00 3.16
2721 4329 2.468532 ATTACCGCGCATAAAGTTGC 57.531 45.000 8.75 0.00 39.29 4.17
2722 4330 1.444836 TTACCGCGCATAAAGTTGCT 58.555 45.000 8.75 0.00 40.54 3.91
2723 4331 2.296831 TACCGCGCATAAAGTTGCTA 57.703 45.000 8.75 0.00 40.54 3.49
2797 4405 8.634335 TGAGTTCAACCAGAAAATATCAATGA 57.366 30.769 0.00 0.00 38.13 2.57
2828 4437 8.633075 AAACAGATTAAAAATATCACCATGCG 57.367 30.769 0.00 0.00 0.00 4.73
2846 4455 7.964559 CACCATGCGTCATATATATTCTTTTGG 59.035 37.037 0.00 0.16 0.00 3.28
2859 4468 4.911514 TTCTTTTGGGAGGAAAACTTCG 57.088 40.909 0.00 0.00 0.00 3.79
2868 4477 5.045140 TGGGAGGAAAACTTCGGATCTATTT 60.045 40.000 0.00 0.00 0.00 1.40
2871 4480 7.388224 GGGAGGAAAACTTCGGATCTATTTATC 59.612 40.741 0.00 0.00 0.00 1.75
2918 4527 4.864247 CACCAAAAATAAAATCCAGCTCCG 59.136 41.667 0.00 0.00 0.00 4.63
2926 4535 2.109425 AATCCAGCTCCGTAAACCAC 57.891 50.000 0.00 0.00 0.00 4.16
2933 4542 0.813184 CTCCGTAAACCACCTAGCGA 59.187 55.000 0.00 0.00 0.00 4.93
2935 4544 1.826720 TCCGTAAACCACCTAGCGATT 59.173 47.619 0.00 0.00 0.00 3.34
2940 4549 4.972440 CGTAAACCACCTAGCGATTACTAC 59.028 45.833 0.00 0.00 0.00 2.73
2943 4552 5.410355 AACCACCTAGCGATTACTACAAA 57.590 39.130 0.00 0.00 0.00 2.83
2946 4555 5.105064 ACCACCTAGCGATTACTACAAACAT 60.105 40.000 0.00 0.00 0.00 2.71
2947 4556 5.462398 CCACCTAGCGATTACTACAAACATC 59.538 44.000 0.00 0.00 0.00 3.06
2948 4557 5.173312 CACCTAGCGATTACTACAAACATCG 59.827 44.000 0.00 0.00 41.20 3.84
2950 4559 3.454375 AGCGATTACTACAAACATCGGG 58.546 45.455 2.88 0.00 39.14 5.14
2952 4561 3.788937 CGATTACTACAAACATCGGGGT 58.211 45.455 0.00 0.00 35.86 4.95
2956 4565 1.338769 ACTACAAACATCGGGGTGAGC 60.339 52.381 0.00 0.00 0.00 4.26
3005 4614 1.339055 CCTCATCGGAGTCTGGCAAAA 60.339 52.381 0.00 0.00 39.64 2.44
3011 4620 2.103432 TCGGAGTCTGGCAAAACTTGTA 59.897 45.455 0.00 0.00 0.00 2.41
3014 4623 2.878406 GAGTCTGGCAAAACTTGTAGCA 59.122 45.455 3.94 0.00 0.00 3.49
3022 4631 4.083802 GGCAAAACTTGTAGCAGTAGACAG 60.084 45.833 0.00 0.00 0.00 3.51
3024 4633 5.333416 GCAAAACTTGTAGCAGTAGACAGTC 60.333 44.000 0.00 0.00 0.00 3.51
3027 4636 3.508012 ACTTGTAGCAGTAGACAGTCTGG 59.492 47.826 13.84 4.01 32.94 3.86
3030 4639 3.759086 TGTAGCAGTAGACAGTCTGGAAG 59.241 47.826 13.84 1.92 32.94 3.46
3034 4643 2.814919 CAGTAGACAGTCTGGAAGTCGT 59.185 50.000 13.84 0.00 37.36 4.34
3045 4654 0.524862 GGAAGTCGTCGTGCTAAGGA 59.475 55.000 0.00 0.00 0.00 3.36
3046 4655 1.134560 GGAAGTCGTCGTGCTAAGGAT 59.865 52.381 0.00 0.00 0.00 3.24
3047 4656 2.452105 GAAGTCGTCGTGCTAAGGATC 58.548 52.381 0.00 0.00 0.00 3.36
3048 4657 1.752683 AGTCGTCGTGCTAAGGATCT 58.247 50.000 0.00 0.00 0.00 2.75
3049 4658 2.915349 AGTCGTCGTGCTAAGGATCTA 58.085 47.619 0.00 0.00 0.00 1.98
3051 4660 4.639334 AGTCGTCGTGCTAAGGATCTATA 58.361 43.478 0.00 0.00 0.00 1.31
3066 4675 1.754803 TCTATAGGACCAACGCACCAG 59.245 52.381 0.00 0.00 0.00 4.00
3069 4678 0.981183 TAGGACCAACGCACCAGAAT 59.019 50.000 0.00 0.00 0.00 2.40
3078 4687 0.179200 CGCACCAGAATAACAACCGC 60.179 55.000 0.00 0.00 0.00 5.68
3081 4690 0.035739 ACCAGAATAACAACCGCCGT 59.964 50.000 0.00 0.00 0.00 5.68
3083 4692 1.434555 CAGAATAACAACCGCCGTCA 58.565 50.000 0.00 0.00 0.00 4.35
3093 4702 2.739913 CAACCGCCGTCAATAAAGAGAA 59.260 45.455 0.00 0.00 0.00 2.87
3094 4703 3.048337 ACCGCCGTCAATAAAGAGAAA 57.952 42.857 0.00 0.00 0.00 2.52
3103 4712 6.750501 CCGTCAATAAAGAGAAACGTAGATCA 59.249 38.462 0.00 0.00 0.00 2.92
3104 4713 7.043986 CCGTCAATAAAGAGAAACGTAGATCAG 60.044 40.741 0.00 0.00 0.00 2.90
3125 4734 7.055667 TCAGAATGATCCAACCTATAGACAC 57.944 40.000 0.00 0.00 42.56 3.67
3129 4738 3.383505 TGATCCAACCTATAGACACACGG 59.616 47.826 0.00 0.00 0.00 4.94
3141 4750 3.834610 AGACACACGGAAATAGACGAAG 58.165 45.455 0.00 0.00 0.00 3.79
3142 4751 2.921754 GACACACGGAAATAGACGAAGG 59.078 50.000 0.00 0.00 0.00 3.46
3149 4758 4.106197 CGGAAATAGACGAAGGAAGACAG 58.894 47.826 0.00 0.00 0.00 3.51
3157 4766 1.827969 CGAAGGAAGACAGGATCCACT 59.172 52.381 15.82 7.40 38.23 4.00
3158 4767 2.417924 CGAAGGAAGACAGGATCCACTG 60.418 54.545 15.82 7.01 44.03 3.66
3159 4768 2.630889 AGGAAGACAGGATCCACTGA 57.369 50.000 15.82 0.00 40.97 3.41
3160 4769 2.907892 AGGAAGACAGGATCCACTGAA 58.092 47.619 15.82 0.00 40.97 3.02
3161 4770 2.836981 AGGAAGACAGGATCCACTGAAG 59.163 50.000 15.82 0.00 40.97 3.02
3162 4771 2.834549 GGAAGACAGGATCCACTGAAGA 59.165 50.000 15.82 0.00 40.97 2.87
3164 4773 2.894731 AGACAGGATCCACTGAAGACA 58.105 47.619 15.82 0.00 40.97 3.41
3166 4775 3.648067 AGACAGGATCCACTGAAGACAAA 59.352 43.478 15.82 0.00 40.97 2.83
3167 4776 3.999663 GACAGGATCCACTGAAGACAAAG 59.000 47.826 15.82 0.00 40.97 2.77
3168 4777 3.244700 ACAGGATCCACTGAAGACAAAGG 60.245 47.826 15.82 0.00 40.97 3.11
3179 4802 2.750237 ACAAAGGCCGAATCCCGC 60.750 61.111 0.00 0.00 36.84 6.13
3209 4832 2.467566 GGATACAAACCTCCACACGT 57.532 50.000 0.00 0.00 0.00 4.49
3215 4838 2.095978 AAACCTCCACACGTCCTCCG 62.096 60.000 0.00 0.00 44.03 4.63
3217 4840 2.052690 CCTCCACACGTCCTCCGAT 61.053 63.158 0.00 0.00 40.70 4.18
3221 4844 1.029681 CCACACGTCCTCCGATGATA 58.970 55.000 0.00 0.00 40.70 2.15
3222 4845 1.613925 CCACACGTCCTCCGATGATAT 59.386 52.381 0.00 0.00 40.70 1.63
3224 4847 3.254903 CCACACGTCCTCCGATGATATTA 59.745 47.826 0.00 0.00 40.70 0.98
3238 4861 4.145365 TGATATTAGAAACACCACCGGG 57.855 45.455 6.32 0.00 41.29 5.73
3240 4863 4.410883 TGATATTAGAAACACCACCGGGAT 59.589 41.667 6.32 0.00 38.05 3.85
3253 4876 3.242291 GGGATGGGGACTAGGCGG 61.242 72.222 0.00 0.00 0.00 6.13
3260 4883 1.459730 GGGACTAGGCGGGGAGAAT 60.460 63.158 0.00 0.00 0.00 2.40
3274 4897 4.999950 CGGGGAGAATCTTATTCCATCTTG 59.000 45.833 0.00 0.00 33.73 3.02
3276 4899 6.605119 GGGGAGAATCTTATTCCATCTTGAA 58.395 40.000 0.00 0.00 33.73 2.69
3278 4901 7.561356 GGGGAGAATCTTATTCCATCTTGAAAA 59.439 37.037 0.00 0.00 33.73 2.29
3282 4905 8.473219 AGAATCTTATTCCATCTTGAAAAAGCC 58.527 33.333 0.00 0.00 0.00 4.35
3283 4906 7.722949 ATCTTATTCCATCTTGAAAAAGCCA 57.277 32.000 0.00 0.00 0.00 4.75
3289 4912 0.521291 TCTTGAAAAAGCCATCGCCG 59.479 50.000 0.00 0.00 34.57 6.46
3290 4913 0.240945 CTTGAAAAAGCCATCGCCGT 59.759 50.000 0.00 0.00 34.57 5.68
3302 4925 0.814410 ATCGCCGTCTCGCTTCTCTA 60.814 55.000 0.00 0.00 0.00 2.43
3303 4926 1.022982 TCGCCGTCTCGCTTCTCTAA 61.023 55.000 0.00 0.00 0.00 2.10
3304 4927 0.179171 CGCCGTCTCGCTTCTCTAAA 60.179 55.000 0.00 0.00 0.00 1.85
3305 4928 1.270068 GCCGTCTCGCTTCTCTAAAC 58.730 55.000 0.00 0.00 0.00 2.01
3306 4929 1.402456 GCCGTCTCGCTTCTCTAAACA 60.402 52.381 0.00 0.00 0.00 2.83
3307 4930 2.925306 GCCGTCTCGCTTCTCTAAACAA 60.925 50.000 0.00 0.00 0.00 2.83
3308 4931 2.917971 CCGTCTCGCTTCTCTAAACAAG 59.082 50.000 0.00 0.00 0.00 3.16
3309 4932 3.366070 CCGTCTCGCTTCTCTAAACAAGA 60.366 47.826 0.00 0.00 0.00 3.02
3310 4933 3.604627 CGTCTCGCTTCTCTAAACAAGAC 59.395 47.826 0.00 0.00 0.00 3.01
3311 4934 4.547532 GTCTCGCTTCTCTAAACAAGACA 58.452 43.478 0.00 0.00 33.72 3.41
3312 4935 4.383351 GTCTCGCTTCTCTAAACAAGACAC 59.617 45.833 0.00 0.00 33.72 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 1716 5.565259 CAGTGCAGTACTTCATTTTTAAGCG 59.435 40.000 0.00 0.00 37.60 4.68
245 1736 0.747644 TGGACTGTTGTGCACCAGTG 60.748 55.000 26.90 12.91 41.80 3.66
447 1946 8.051901 AGACAATTATTTAAAAACGGAGGGAG 57.948 34.615 0.00 0.00 0.00 4.30
448 1947 8.411991 AAGACAATTATTTAAAAACGGAGGGA 57.588 30.769 0.00 0.00 0.00 4.20
449 1948 9.135843 GAAAGACAATTATTTAAAAACGGAGGG 57.864 33.333 0.00 0.00 0.00 4.30
450 1949 9.908152 AGAAAGACAATTATTTAAAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
482 1981 9.157104 TGCTTCGTATGTAGTCATTTATTGAAA 57.843 29.630 0.00 0.00 35.70 2.69
483 1982 8.710835 TGCTTCGTATGTAGTCATTTATTGAA 57.289 30.769 0.00 0.00 35.70 2.69
484 1983 8.710835 TTGCTTCGTATGTAGTCATTTATTGA 57.289 30.769 0.00 0.00 35.70 2.57
485 1984 9.767684 TTTTGCTTCGTATGTAGTCATTTATTG 57.232 29.630 0.00 0.00 35.70 1.90
487 1986 9.935682 CATTTTGCTTCGTATGTAGTCATTTAT 57.064 29.630 0.00 0.00 35.70 1.40
488 1987 9.157104 TCATTTTGCTTCGTATGTAGTCATTTA 57.843 29.630 0.00 0.00 35.70 1.40
489 1988 8.039603 TCATTTTGCTTCGTATGTAGTCATTT 57.960 30.769 0.00 0.00 35.70 2.32
490 1989 7.334421 ACTCATTTTGCTTCGTATGTAGTCATT 59.666 33.333 0.00 0.00 35.70 2.57
491 1990 6.818644 ACTCATTTTGCTTCGTATGTAGTCAT 59.181 34.615 0.00 0.00 38.00 3.06
492 1991 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
493 1992 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
494 1993 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
495 1994 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
496 1995 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
497 1996 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
498 1997 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
499 1998 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
500 1999 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
501 2000 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
502 2001 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
503 2002 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
515 2014 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
516 2015 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
517 2016 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
523 2022 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
524 2023 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
525 2024 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
526 2025 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
527 2026 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
528 2027 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
544 2043 9.872721 TCAAATAAACTACAACATACGGATGTA 57.127 29.630 15.10 0.00 45.93 2.29
546 2045 9.093970 TCTCAAATAAACTACAACATACGGATG 57.906 33.333 5.94 5.94 39.16 3.51
547 2046 9.832445 ATCTCAAATAAACTACAACATACGGAT 57.168 29.630 0.00 0.00 0.00 4.18
574 2073 9.099454 CGTTCCTAAATAATTGTCTTTCTAGCT 57.901 33.333 0.00 0.00 0.00 3.32
575 2074 8.336080 CCGTTCCTAAATAATTGTCTTTCTAGC 58.664 37.037 0.00 0.00 0.00 3.42
576 2075 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
577 2076 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
578 2077 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
579 2078 7.551617 TCCTCCGTTCCTAAATAATTGTCTTTC 59.448 37.037 0.00 0.00 0.00 2.62
580 2079 7.399634 TCCTCCGTTCCTAAATAATTGTCTTT 58.600 34.615 0.00 0.00 0.00 2.52
581 2080 6.954232 TCCTCCGTTCCTAAATAATTGTCTT 58.046 36.000 0.00 0.00 0.00 3.01
582 2081 6.555463 TCCTCCGTTCCTAAATAATTGTCT 57.445 37.500 0.00 0.00 0.00 3.41
583 2082 6.822170 ACTTCCTCCGTTCCTAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
584 2083 6.718294 ACTTCCTCCGTTCCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
585 2084 8.726870 TTACTTCCTCCGTTCCTAAATAATTG 57.273 34.615 0.00 0.00 0.00 2.32
586 2085 9.338622 CATTACTTCCTCCGTTCCTAAATAATT 57.661 33.333 0.00 0.00 0.00 1.40
587 2086 8.711170 TCATTACTTCCTCCGTTCCTAAATAAT 58.289 33.333 0.00 0.00 0.00 1.28
588 2087 8.081517 TCATTACTTCCTCCGTTCCTAAATAA 57.918 34.615 0.00 0.00 0.00 1.40
589 2088 7.664552 TCATTACTTCCTCCGTTCCTAAATA 57.335 36.000 0.00 0.00 0.00 1.40
590 2089 6.555463 TCATTACTTCCTCCGTTCCTAAAT 57.445 37.500 0.00 0.00 0.00 1.40
591 2090 6.155565 TCATCATTACTTCCTCCGTTCCTAAA 59.844 38.462 0.00 0.00 0.00 1.85
592 2091 5.659525 TCATCATTACTTCCTCCGTTCCTAA 59.340 40.000 0.00 0.00 0.00 2.69
593 2092 5.205821 TCATCATTACTTCCTCCGTTCCTA 58.794 41.667 0.00 0.00 0.00 2.94
594 2093 4.030913 TCATCATTACTTCCTCCGTTCCT 58.969 43.478 0.00 0.00 0.00 3.36
595 2094 4.402056 TCATCATTACTTCCTCCGTTCC 57.598 45.455 0.00 0.00 0.00 3.62
596 2095 5.661458 TCTTCATCATTACTTCCTCCGTTC 58.339 41.667 0.00 0.00 0.00 3.95
597 2096 5.677319 TCTTCATCATTACTTCCTCCGTT 57.323 39.130 0.00 0.00 0.00 4.44
598 2097 5.677319 TTCTTCATCATTACTTCCTCCGT 57.323 39.130 0.00 0.00 0.00 4.69
599 2098 5.005779 CGTTTCTTCATCATTACTTCCTCCG 59.994 44.000 0.00 0.00 0.00 4.63
600 2099 5.294552 CCGTTTCTTCATCATTACTTCCTCC 59.705 44.000 0.00 0.00 0.00 4.30
601 2100 5.220681 GCCGTTTCTTCATCATTACTTCCTC 60.221 44.000 0.00 0.00 0.00 3.71
602 2101 4.636206 GCCGTTTCTTCATCATTACTTCCT 59.364 41.667 0.00 0.00 0.00 3.36
603 2102 4.201920 GGCCGTTTCTTCATCATTACTTCC 60.202 45.833 0.00 0.00 0.00 3.46
604 2103 4.636206 AGGCCGTTTCTTCATCATTACTTC 59.364 41.667 0.00 0.00 0.00 3.01
605 2104 4.396166 CAGGCCGTTTCTTCATCATTACTT 59.604 41.667 0.00 0.00 0.00 2.24
606 2105 3.941483 CAGGCCGTTTCTTCATCATTACT 59.059 43.478 0.00 0.00 0.00 2.24
607 2106 3.689649 ACAGGCCGTTTCTTCATCATTAC 59.310 43.478 0.00 0.00 0.00 1.89
608 2107 3.938963 GACAGGCCGTTTCTTCATCATTA 59.061 43.478 0.00 0.00 0.00 1.90
609 2108 2.749621 GACAGGCCGTTTCTTCATCATT 59.250 45.455 0.00 0.00 0.00 2.57
615 2114 1.157585 GGAAGACAGGCCGTTTCTTC 58.842 55.000 24.85 24.85 43.05 2.87
623 2122 0.110486 TTGAACAGGGAAGACAGGCC 59.890 55.000 0.00 0.00 0.00 5.19
630 2129 4.019174 ACATGCCTAATTGAACAGGGAAG 58.981 43.478 0.00 0.00 35.73 3.46
641 2140 3.012518 GCAGACAGTGACATGCCTAATT 58.987 45.455 0.00 0.00 32.49 1.40
642 2141 2.238144 AGCAGACAGTGACATGCCTAAT 59.762 45.455 12.94 0.00 39.51 1.73
686 2185 3.052036 TGCTAACGTTAACACTTCCGTC 58.948 45.455 9.68 0.00 32.30 4.79
788 2287 1.884926 GAATTCTGGGCTCGGAGCG 60.885 63.158 22.63 10.18 43.62 5.03
797 2296 4.824289 CAACATTTCTTGGGAATTCTGGG 58.176 43.478 5.23 0.00 0.00 4.45
799 2298 3.922240 CGCAACATTTCTTGGGAATTCTG 59.078 43.478 5.23 0.00 36.44 3.02
826 2325 5.057843 AGCAGAATGATTGGACCATATGT 57.942 39.130 0.00 0.00 39.69 2.29
1055 2582 7.094592 TGCTACTACTGCTGCTAGTATTATCAG 60.095 40.741 8.64 3.75 33.04 2.90
1077 2604 3.386726 ACACAACTAGACAACTGGTGCTA 59.613 43.478 0.00 0.00 37.87 3.49
1099 2626 4.681074 TGCTCCATGGTACGATCAAATA 57.319 40.909 12.58 0.00 0.00 1.40
1107 2634 3.452755 TCTTGTATGCTCCATGGTACG 57.547 47.619 12.58 2.84 0.00 3.67
1109 2636 5.132502 CCATTTCTTGTATGCTCCATGGTA 58.867 41.667 12.58 0.00 0.00 3.25
1121 2648 6.775142 TGACCTTCAAATCACCATTTCTTGTA 59.225 34.615 0.00 0.00 28.97 2.41
1359 2901 4.457496 CATGGGCGTGACGGAGCT 62.457 66.667 7.25 0.00 0.00 4.09
1374 2922 4.457496 CGCGGCCACAGTCTCCAT 62.457 66.667 2.24 0.00 0.00 3.41
1473 3027 2.433318 GAGCACGGTCTGGCTGTC 60.433 66.667 0.00 0.00 41.22 3.51
1652 3224 3.303938 CATCCTCAGGTCTCTGTACCAT 58.696 50.000 0.00 0.00 42.40 3.55
1752 3324 2.661537 CGCTGCCACTTGTGACGA 60.662 61.111 1.89 0.00 0.00 4.20
1754 3326 1.291877 CTACCGCTGCCACTTGTGAC 61.292 60.000 1.89 0.00 0.00 3.67
1904 3479 2.165437 GCTCTTGATCTCGAACAGGTCT 59.835 50.000 0.00 0.00 32.67 3.85
1964 3539 1.517361 CACGCTCCACTGGATGCTA 59.483 57.895 14.09 0.00 0.00 3.49
2261 3854 1.557371 TGGAATTCATAGACACCCGCA 59.443 47.619 7.93 0.00 0.00 5.69
2309 3917 3.300590 CCTTTATGCGCGTTTTCATTCAC 59.699 43.478 7.78 0.00 0.00 3.18
2322 3930 2.589492 CGCCGCTCTCCTTTATGCG 61.589 63.158 0.00 0.00 46.74 4.73
2328 3936 1.966451 CCAAAACGCCGCTCTCCTT 60.966 57.895 0.00 0.00 0.00 3.36
2329 3937 2.358737 CCAAAACGCCGCTCTCCT 60.359 61.111 0.00 0.00 0.00 3.69
2330 3938 4.103103 GCCAAAACGCCGCTCTCC 62.103 66.667 0.00 0.00 0.00 3.71
2331 3939 3.028366 GAGCCAAAACGCCGCTCTC 62.028 63.158 1.14 0.00 44.52 3.20
2332 3940 3.050275 GAGCCAAAACGCCGCTCT 61.050 61.111 1.14 0.00 44.52 4.09
2333 3941 4.103103 GGAGCCAAAACGCCGCTC 62.103 66.667 0.00 0.00 46.67 5.03
2334 3942 3.248446 TAGGAGCCAAAACGCCGCT 62.248 57.895 0.00 0.00 34.23 5.52
2335 3943 2.744709 TAGGAGCCAAAACGCCGC 60.745 61.111 0.00 0.00 34.23 6.53
2336 3944 2.106683 CCTAGGAGCCAAAACGCCG 61.107 63.158 1.05 0.00 34.23 6.46
2337 3945 1.002502 ACCTAGGAGCCAAAACGCC 60.003 57.895 17.98 0.00 0.00 5.68
2338 3946 1.923227 GCACCTAGGAGCCAAAACGC 61.923 60.000 19.57 2.23 0.00 4.84
2339 3947 0.605319 TGCACCTAGGAGCCAAAACG 60.605 55.000 25.94 0.22 0.00 3.60
2340 3948 1.839424 ATGCACCTAGGAGCCAAAAC 58.161 50.000 25.94 0.85 0.00 2.43
2341 3949 3.554934 CATATGCACCTAGGAGCCAAAA 58.445 45.455 25.94 9.83 0.00 2.44
2343 3951 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
2344 3952 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
2345 3953 0.322008 GGCATATGCACCTAGGAGCC 60.322 60.000 28.07 16.53 44.36 4.70
2346 3954 0.397941 TGGCATATGCACCTAGGAGC 59.602 55.000 28.07 22.91 44.36 4.70
2347 3955 3.079578 CAATGGCATATGCACCTAGGAG 58.920 50.000 28.07 9.24 44.36 3.69
2348 3956 2.442878 ACAATGGCATATGCACCTAGGA 59.557 45.455 28.07 4.04 44.36 2.94
2349 3957 2.816087 GACAATGGCATATGCACCTAGG 59.184 50.000 28.07 7.41 44.36 3.02
2350 3958 2.481568 CGACAATGGCATATGCACCTAG 59.518 50.000 28.07 15.58 44.36 3.02
2351 3959 2.103941 TCGACAATGGCATATGCACCTA 59.896 45.455 28.07 12.11 44.36 3.08
2352 3960 1.134128 TCGACAATGGCATATGCACCT 60.134 47.619 28.07 9.81 44.36 4.00
2353 3961 1.308047 TCGACAATGGCATATGCACC 58.692 50.000 28.07 13.03 44.36 5.01
2355 3963 4.578105 TGTATTTCGACAATGGCATATGCA 59.422 37.500 28.07 15.05 44.36 3.96
2356 3964 4.911610 GTGTATTTCGACAATGGCATATGC 59.088 41.667 19.79 19.79 41.14 3.14
2357 3965 6.058827 TGTGTATTTCGACAATGGCATATG 57.941 37.500 0.00 4.29 0.00 1.78
2358 3966 6.882610 ATGTGTATTTCGACAATGGCATAT 57.117 33.333 0.00 0.00 0.00 1.78
2359 3967 6.691754 AATGTGTATTTCGACAATGGCATA 57.308 33.333 0.00 0.00 0.00 3.14
2360 3968 5.581126 AATGTGTATTTCGACAATGGCAT 57.419 34.783 0.00 0.00 0.00 4.40
2361 3969 5.384063 AAATGTGTATTTCGACAATGGCA 57.616 34.783 0.00 0.00 30.85 4.92
2362 3970 5.932021 GAAATGTGTATTTCGACAATGGC 57.068 39.130 0.00 0.00 41.81 4.40
2391 3999 9.487790 GTGGGATTTTTGTTCTGAATTATTCAA 57.512 29.630 9.05 0.00 39.58 2.69
2392 4000 7.812191 CGTGGGATTTTTGTTCTGAATTATTCA 59.188 33.333 7.46 7.46 38.17 2.57
2393 4001 7.812669 ACGTGGGATTTTTGTTCTGAATTATTC 59.187 33.333 0.00 0.00 0.00 1.75
2394 4002 7.598493 CACGTGGGATTTTTGTTCTGAATTATT 59.402 33.333 7.95 0.00 0.00 1.40
2395 4003 7.090173 CACGTGGGATTTTTGTTCTGAATTAT 58.910 34.615 7.95 0.00 0.00 1.28
2396 4004 6.039941 ACACGTGGGATTTTTGTTCTGAATTA 59.960 34.615 21.57 0.00 0.00 1.40
2397 4005 5.163457 ACACGTGGGATTTTTGTTCTGAATT 60.163 36.000 21.57 0.00 0.00 2.17
2398 4006 4.340950 ACACGTGGGATTTTTGTTCTGAAT 59.659 37.500 21.57 0.00 0.00 2.57
2399 4007 3.697045 ACACGTGGGATTTTTGTTCTGAA 59.303 39.130 21.57 0.00 0.00 3.02
2400 4008 3.283751 ACACGTGGGATTTTTGTTCTGA 58.716 40.909 21.57 0.00 0.00 3.27
2401 4009 3.708563 ACACGTGGGATTTTTGTTCTG 57.291 42.857 21.57 0.00 0.00 3.02
2402 4010 6.317893 GGATATACACGTGGGATTTTTGTTCT 59.682 38.462 21.57 0.00 0.00 3.01
2403 4011 6.492254 GGATATACACGTGGGATTTTTGTTC 58.508 40.000 21.57 2.71 0.00 3.18
2404 4012 5.065474 CGGATATACACGTGGGATTTTTGTT 59.935 40.000 21.57 0.00 0.00 2.83
2405 4013 4.573201 CGGATATACACGTGGGATTTTTGT 59.427 41.667 21.57 0.00 0.00 2.83
2406 4014 4.024387 CCGGATATACACGTGGGATTTTTG 60.024 45.833 21.57 3.09 0.00 2.44
2407 4015 4.131596 CCGGATATACACGTGGGATTTTT 58.868 43.478 21.57 0.00 0.00 1.94
2408 4016 3.388676 TCCGGATATACACGTGGGATTTT 59.611 43.478 21.57 0.00 0.00 1.82
2409 4017 2.967201 TCCGGATATACACGTGGGATTT 59.033 45.455 21.57 7.88 0.00 2.17
2410 4018 2.298163 GTCCGGATATACACGTGGGATT 59.702 50.000 21.57 0.32 0.00 3.01
2411 4019 1.891150 GTCCGGATATACACGTGGGAT 59.109 52.381 21.57 14.88 0.00 3.85
2412 4020 1.321474 GTCCGGATATACACGTGGGA 58.679 55.000 21.57 11.84 0.00 4.37
2413 4021 1.034356 TGTCCGGATATACACGTGGG 58.966 55.000 21.57 9.47 0.00 4.61
2414 4022 3.380479 AATGTCCGGATATACACGTGG 57.620 47.619 21.57 0.00 0.00 4.94
2415 4023 6.422701 ACATAAAATGTCCGGATATACACGTG 59.577 38.462 14.71 15.48 39.92 4.49
2416 4024 6.422701 CACATAAAATGTCCGGATATACACGT 59.577 38.462 14.71 5.84 42.70 4.49
2417 4025 6.617741 GCACATAAAATGTCCGGATATACACG 60.618 42.308 14.71 5.24 42.70 4.49
2418 4026 6.599437 GCACATAAAATGTCCGGATATACAC 58.401 40.000 14.71 0.00 42.70 2.90
2419 4027 5.407084 CGCACATAAAATGTCCGGATATACA 59.593 40.000 14.71 5.01 40.59 2.29
2420 4028 5.854157 CGCACATAAAATGTCCGGATATAC 58.146 41.667 14.71 0.00 40.59 1.47
2439 4047 0.653636 TCGAAACCTTGTGAACGCAC 59.346 50.000 0.00 0.00 45.35 5.34
2440 4048 1.262950 CATCGAAACCTTGTGAACGCA 59.737 47.619 0.00 0.00 0.00 5.24
2441 4049 1.529438 TCATCGAAACCTTGTGAACGC 59.471 47.619 0.00 0.00 0.00 4.84
2442 4050 3.870723 TTCATCGAAACCTTGTGAACG 57.129 42.857 0.00 0.00 0.00 3.95
2443 4051 5.052633 CGTTTTTCATCGAAACCTTGTGAAC 60.053 40.000 0.00 0.00 34.35 3.18
2444 4052 5.031578 CGTTTTTCATCGAAACCTTGTGAA 58.968 37.500 0.00 0.00 34.35 3.18
2445 4053 4.333095 TCGTTTTTCATCGAAACCTTGTGA 59.667 37.500 0.00 0.00 34.35 3.58
2446 4054 4.436523 GTCGTTTTTCATCGAAACCTTGTG 59.563 41.667 0.00 0.00 37.81 3.33
2447 4055 4.594136 GTCGTTTTTCATCGAAACCTTGT 58.406 39.130 0.00 0.00 37.81 3.16
2448 4056 3.657625 CGTCGTTTTTCATCGAAACCTTG 59.342 43.478 0.00 0.00 37.81 3.61
2449 4057 3.310501 ACGTCGTTTTTCATCGAAACCTT 59.689 39.130 0.00 0.00 37.81 3.50
2450 4058 2.867975 ACGTCGTTTTTCATCGAAACCT 59.132 40.909 0.00 0.00 37.81 3.50
2451 4059 3.243226 ACGTCGTTTTTCATCGAAACC 57.757 42.857 0.00 0.00 37.81 3.27
2452 4060 5.594215 AAAACGTCGTTTTTCATCGAAAC 57.406 34.783 26.23 0.00 42.11 2.78
2489 4097 7.214467 TGACGAGGCATTTCTTTATCTTTTT 57.786 32.000 0.00 0.00 0.00 1.94
2490 4098 6.817765 TGACGAGGCATTTCTTTATCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
2491 4099 6.817765 TTGACGAGGCATTTCTTTATCTTT 57.182 33.333 0.00 0.00 0.00 2.52
2492 4100 7.770897 ACTATTGACGAGGCATTTCTTTATCTT 59.229 33.333 0.00 0.00 0.00 2.40
2493 4101 7.275920 ACTATTGACGAGGCATTTCTTTATCT 58.724 34.615 0.00 0.00 0.00 1.98
2494 4102 7.484035 ACTATTGACGAGGCATTTCTTTATC 57.516 36.000 0.00 0.00 0.00 1.75
2495 4103 7.865706 AACTATTGACGAGGCATTTCTTTAT 57.134 32.000 0.00 0.00 0.00 1.40
2496 4104 8.255206 TCTAACTATTGACGAGGCATTTCTTTA 58.745 33.333 0.00 0.00 0.00 1.85
2497 4105 7.103641 TCTAACTATTGACGAGGCATTTCTTT 58.896 34.615 0.00 0.00 0.00 2.52
2498 4106 6.640518 TCTAACTATTGACGAGGCATTTCTT 58.359 36.000 0.00 0.00 0.00 2.52
2499 4107 6.222038 TCTAACTATTGACGAGGCATTTCT 57.778 37.500 0.00 0.00 0.00 2.52
2500 4108 6.903883 TTCTAACTATTGACGAGGCATTTC 57.096 37.500 0.00 0.00 0.00 2.17
2501 4109 7.047891 TCATTCTAACTATTGACGAGGCATTT 58.952 34.615 0.00 0.00 0.00 2.32
2502 4110 6.582636 TCATTCTAACTATTGACGAGGCATT 58.417 36.000 0.00 0.00 0.00 3.56
2503 4111 6.161855 TCATTCTAACTATTGACGAGGCAT 57.838 37.500 0.00 0.00 0.00 4.40
2504 4112 5.592104 TCATTCTAACTATTGACGAGGCA 57.408 39.130 0.00 0.00 0.00 4.75
2505 4113 5.050702 GCTTCATTCTAACTATTGACGAGGC 60.051 44.000 0.00 0.00 0.00 4.70
2506 4114 6.042777 TGCTTCATTCTAACTATTGACGAGG 58.957 40.000 0.00 0.00 0.00 4.63
2507 4115 7.436376 TGATGCTTCATTCTAACTATTGACGAG 59.564 37.037 0.00 0.00 0.00 4.18
2508 4116 7.264947 TGATGCTTCATTCTAACTATTGACGA 58.735 34.615 0.00 0.00 0.00 4.20
2509 4117 7.436376 TCTGATGCTTCATTCTAACTATTGACG 59.564 37.037 2.33 0.00 0.00 4.35
2510 4118 8.654230 TCTGATGCTTCATTCTAACTATTGAC 57.346 34.615 2.33 0.00 0.00 3.18
2511 4119 9.671279 TTTCTGATGCTTCATTCTAACTATTGA 57.329 29.630 2.33 0.00 0.00 2.57
2515 4123 9.453572 ACAATTTCTGATGCTTCATTCTAACTA 57.546 29.630 2.33 0.00 0.00 2.24
2516 4124 8.345724 ACAATTTCTGATGCTTCATTCTAACT 57.654 30.769 2.33 0.00 0.00 2.24
2517 4125 8.457261 AGACAATTTCTGATGCTTCATTCTAAC 58.543 33.333 2.33 0.00 31.12 2.34
2518 4126 8.571461 AGACAATTTCTGATGCTTCATTCTAA 57.429 30.769 2.33 0.00 31.12 2.10
2519 4127 8.571461 AAGACAATTTCTGATGCTTCATTCTA 57.429 30.769 2.33 0.00 33.46 2.10
2520 4128 7.463961 AAGACAATTTCTGATGCTTCATTCT 57.536 32.000 2.33 0.00 33.46 2.40
2521 4129 8.530269 AAAAGACAATTTCTGATGCTTCATTC 57.470 30.769 2.33 0.00 33.46 2.67
2522 4130 8.897872 AAAAAGACAATTTCTGATGCTTCATT 57.102 26.923 2.33 0.00 33.46 2.57
2571 4179 4.859798 CGTGCACAAGGTTTTAGTGAAAAA 59.140 37.500 18.64 0.00 36.32 1.94
2572 4180 4.416620 CGTGCACAAGGTTTTAGTGAAAA 58.583 39.130 18.64 0.00 35.33 2.29
2573 4181 3.732471 GCGTGCACAAGGTTTTAGTGAAA 60.732 43.478 18.64 0.00 35.33 2.69
2574 4182 2.223386 GCGTGCACAAGGTTTTAGTGAA 60.223 45.455 18.64 0.00 35.33 3.18
2575 4183 1.332375 GCGTGCACAAGGTTTTAGTGA 59.668 47.619 18.64 0.00 35.33 3.41
2576 4184 1.064803 TGCGTGCACAAGGTTTTAGTG 59.935 47.619 18.64 0.00 36.39 2.74
2577 4185 1.064952 GTGCGTGCACAAGGTTTTAGT 59.935 47.619 19.45 0.00 45.53 2.24
2578 4186 1.753956 GTGCGTGCACAAGGTTTTAG 58.246 50.000 19.45 0.00 45.53 1.85
2579 4187 3.928343 GTGCGTGCACAAGGTTTTA 57.072 47.368 19.45 0.00 45.53 1.52
2580 4188 4.804496 GTGCGTGCACAAGGTTTT 57.196 50.000 19.45 0.00 45.53 2.43
2588 4196 2.250188 GGACATTTTATGTGCGTGCAC 58.750 47.619 17.72 17.72 45.03 4.57
2589 4197 2.627863 GGACATTTTATGTGCGTGCA 57.372 45.000 0.00 0.00 45.03 4.57
2594 4202 6.599437 GTGTATATCCGGACATTTTATGTGC 58.401 40.000 6.12 0.00 45.03 4.57
2595 4203 6.617741 GCGTGTATATCCGGACATTTTATGTG 60.618 42.308 6.12 0.00 45.03 3.21
2597 4205 5.444087 CGCGTGTATATCCGGACATTTTATG 60.444 44.000 6.12 0.00 0.00 1.90
2598 4206 4.624024 CGCGTGTATATCCGGACATTTTAT 59.376 41.667 6.12 2.53 0.00 1.40
2599 4207 3.982701 CGCGTGTATATCCGGACATTTTA 59.017 43.478 6.12 0.00 0.00 1.52
2600 4208 2.798283 CGCGTGTATATCCGGACATTTT 59.202 45.455 6.12 0.00 0.00 1.82
2601 4209 2.400399 CGCGTGTATATCCGGACATTT 58.600 47.619 6.12 0.00 0.00 2.32
2602 4210 1.336517 CCGCGTGTATATCCGGACATT 60.337 52.381 6.12 0.00 43.20 2.71
2603 4211 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.000 6.12 2.01 43.20 3.06
2604 4212 1.655885 CCGCGTGTATATCCGGACA 59.344 57.895 6.12 0.00 43.20 4.02
2605 4213 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
2606 4214 0.609957 ATCCCGCGTGTATATCCGGA 60.610 55.000 6.61 6.61 43.20 5.14
2607 4215 0.245539 AATCCCGCGTGTATATCCGG 59.754 55.000 4.92 0.00 40.39 5.14
2608 4216 2.074547 AAATCCCGCGTGTATATCCG 57.925 50.000 4.92 0.00 0.00 4.18
2609 4217 3.562557 ACAAAAATCCCGCGTGTATATCC 59.437 43.478 4.92 0.00 0.00 2.59
2610 4218 4.806342 ACAAAAATCCCGCGTGTATATC 57.194 40.909 4.92 0.00 0.00 1.63
2611 4219 4.035909 GGAACAAAAATCCCGCGTGTATAT 59.964 41.667 4.92 0.00 0.00 0.86
2612 4220 3.374678 GGAACAAAAATCCCGCGTGTATA 59.625 43.478 4.92 0.00 0.00 1.47
2613 4221 2.162809 GGAACAAAAATCCCGCGTGTAT 59.837 45.455 4.92 0.00 0.00 2.29
2614 4222 1.536331 GGAACAAAAATCCCGCGTGTA 59.464 47.619 4.92 0.00 0.00 2.90
2615 4223 0.312729 GGAACAAAAATCCCGCGTGT 59.687 50.000 4.92 0.00 0.00 4.49
2616 4224 0.727793 CGGAACAAAAATCCCGCGTG 60.728 55.000 4.92 0.00 35.29 5.34
2617 4225 0.885596 TCGGAACAAAAATCCCGCGT 60.886 50.000 4.92 0.00 41.55 6.01
2618 4226 0.238817 TTCGGAACAAAAATCCCGCG 59.761 50.000 0.00 0.00 41.55 6.46
2619 4227 2.647529 ATTCGGAACAAAAATCCCGC 57.352 45.000 0.00 0.00 41.55 6.13
2620 4228 5.915812 AAAAATTCGGAACAAAAATCCCG 57.084 34.783 0.00 0.00 43.02 5.14
2644 4252 8.918961 TGTCGAAATACACATTTTGAAAAGTT 57.081 26.923 0.00 0.00 43.22 2.66
2645 4253 8.918961 TTGTCGAAATACACATTTTGAAAAGT 57.081 26.923 0.00 0.00 43.22 2.66
2646 4254 9.782028 CATTGTCGAAATACACATTTTGAAAAG 57.218 29.630 8.29 0.00 41.77 2.27
2647 4255 8.759641 CCATTGTCGAAATACACATTTTGAAAA 58.240 29.630 5.73 5.73 43.22 2.29
2648 4256 7.383572 CCCATTGTCGAAATACACATTTTGAAA 59.616 33.333 2.39 0.00 43.22 2.69
2649 4257 6.865726 CCCATTGTCGAAATACACATTTTGAA 59.134 34.615 2.39 0.00 43.22 2.69
2650 4258 6.015856 ACCCATTGTCGAAATACACATTTTGA 60.016 34.615 0.00 0.00 40.68 2.69
2651 4259 6.089283 CACCCATTGTCGAAATACACATTTTG 59.911 38.462 0.00 0.00 37.01 2.44
2652 4260 6.155827 CACCCATTGTCGAAATACACATTTT 58.844 36.000 0.00 0.00 34.44 1.82
2653 4261 5.708948 CACCCATTGTCGAAATACACATTT 58.291 37.500 0.00 0.00 37.06 2.32
2654 4262 4.380444 GCACCCATTGTCGAAATACACATT 60.380 41.667 0.00 0.00 0.00 2.71
2655 4263 3.128589 GCACCCATTGTCGAAATACACAT 59.871 43.478 0.00 0.00 0.00 3.21
2656 4264 2.486203 GCACCCATTGTCGAAATACACA 59.514 45.455 0.00 0.00 0.00 3.72
2657 4265 2.486203 TGCACCCATTGTCGAAATACAC 59.514 45.455 0.00 0.00 0.00 2.90
2658 4266 2.784347 TGCACCCATTGTCGAAATACA 58.216 42.857 0.00 0.00 0.00 2.29
2659 4267 5.451908 CATATGCACCCATTGTCGAAATAC 58.548 41.667 0.00 0.00 32.85 1.89
2660 4268 4.023279 GCATATGCACCCATTGTCGAAATA 60.023 41.667 22.84 0.00 41.59 1.40
2661 4269 3.243501 GCATATGCACCCATTGTCGAAAT 60.244 43.478 22.84 0.00 41.59 2.17
2662 4270 2.098934 GCATATGCACCCATTGTCGAAA 59.901 45.455 22.84 0.00 41.59 3.46
2663 4271 1.675483 GCATATGCACCCATTGTCGAA 59.325 47.619 22.84 0.00 41.59 3.71
2664 4272 1.308047 GCATATGCACCCATTGTCGA 58.692 50.000 22.84 0.00 41.59 4.20
2665 4273 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
2676 4284 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
2677 4285 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
2678 4286 3.759581 CATTTGGCTCCTAGGTGCATAT 58.240 45.455 31.19 19.65 36.47 1.78
2679 4287 2.749466 GCATTTGGCTCCTAGGTGCATA 60.749 50.000 31.19 19.50 40.25 3.14
2680 4288 2.025863 GCATTTGGCTCCTAGGTGCAT 61.026 52.381 31.19 17.16 40.25 3.96
2681 4289 0.680921 GCATTTGGCTCCTAGGTGCA 60.681 55.000 31.19 17.76 40.25 4.57
2682 4290 0.680921 TGCATTTGGCTCCTAGGTGC 60.681 55.000 24.68 24.68 45.15 5.01
2683 4291 1.838112 TTGCATTTGGCTCCTAGGTG 58.162 50.000 9.08 7.68 45.15 4.00
2684 4292 2.834638 ATTGCATTTGGCTCCTAGGT 57.165 45.000 9.08 0.00 45.15 3.08
2685 4293 3.319122 GGTAATTGCATTTGGCTCCTAGG 59.681 47.826 0.82 0.82 45.15 3.02
2686 4294 3.003689 CGGTAATTGCATTTGGCTCCTAG 59.996 47.826 4.11 0.00 45.15 3.02
2687 4295 2.948979 CGGTAATTGCATTTGGCTCCTA 59.051 45.455 4.11 0.00 45.15 2.94
2688 4296 1.750778 CGGTAATTGCATTTGGCTCCT 59.249 47.619 4.11 0.00 45.15 3.69
2689 4297 1.802508 GCGGTAATTGCATTTGGCTCC 60.803 52.381 4.11 1.71 45.15 4.70
2690 4298 1.559831 GCGGTAATTGCATTTGGCTC 58.440 50.000 4.11 0.00 45.15 4.70
2691 4299 0.179140 CGCGGTAATTGCATTTGGCT 60.179 50.000 0.00 0.00 45.15 4.75
2692 4300 1.751536 GCGCGGTAATTGCATTTGGC 61.752 55.000 8.83 4.45 45.13 4.52
2693 4301 0.457509 TGCGCGGTAATTGCATTTGG 60.458 50.000 8.83 0.00 32.86 3.28
2694 4302 1.558741 ATGCGCGGTAATTGCATTTG 58.441 45.000 8.83 0.00 46.55 2.32
2695 4303 3.428746 TTATGCGCGGTAATTGCATTT 57.571 38.095 8.83 0.00 46.55 2.32
2696 4304 3.181491 ACTTTATGCGCGGTAATTGCATT 60.181 39.130 8.83 0.00 46.55 3.56
2698 4306 1.740585 ACTTTATGCGCGGTAATTGCA 59.259 42.857 8.83 0.00 43.67 4.08
2699 4307 2.468532 ACTTTATGCGCGGTAATTGC 57.531 45.000 8.83 0.00 0.00 3.56
2700 4308 2.529894 GCAACTTTATGCGCGGTAATTG 59.470 45.455 8.83 8.34 36.45 2.32
2701 4309 2.792749 GCAACTTTATGCGCGGTAATT 58.207 42.857 8.83 0.00 36.45 1.40
2702 4310 2.468532 GCAACTTTATGCGCGGTAAT 57.531 45.000 8.83 0.00 36.45 1.89
2703 4311 3.980136 GCAACTTTATGCGCGGTAA 57.020 47.368 8.83 1.42 36.45 2.85
2710 4318 7.281100 AGAGGAACATAGTTAGCAACTTTATGC 59.719 37.037 6.82 0.00 46.78 3.14
2711 4319 8.723942 AGAGGAACATAGTTAGCAACTTTATG 57.276 34.615 6.82 7.98 42.81 1.90
2713 4321 9.817809 CATAGAGGAACATAGTTAGCAACTTTA 57.182 33.333 6.82 0.00 42.81 1.85
2714 4322 8.322091 ACATAGAGGAACATAGTTAGCAACTTT 58.678 33.333 6.82 0.00 42.81 2.66
2715 4323 7.852263 ACATAGAGGAACATAGTTAGCAACTT 58.148 34.615 6.82 0.00 42.81 2.66
2716 4324 7.425224 ACATAGAGGAACATAGTTAGCAACT 57.575 36.000 6.74 6.74 45.40 3.16
2717 4325 9.197694 CATACATAGAGGAACATAGTTAGCAAC 57.802 37.037 0.00 0.00 0.00 4.17
2718 4326 8.924303 ACATACATAGAGGAACATAGTTAGCAA 58.076 33.333 0.00 0.00 0.00 3.91
2719 4327 8.478775 ACATACATAGAGGAACATAGTTAGCA 57.521 34.615 0.00 0.00 0.00 3.49
2720 4328 9.843334 GTACATACATAGAGGAACATAGTTAGC 57.157 37.037 0.00 0.00 0.00 3.09
2722 4330 9.871175 TGGTACATACATAGAGGAACATAGTTA 57.129 33.333 0.00 0.00 0.00 2.24
2723 4331 8.639761 GTGGTACATACATAGAGGAACATAGTT 58.360 37.037 0.00 0.00 44.52 2.24
2760 4368 8.553459 TCTGGTTGAACTCATAATTCTTCTTC 57.447 34.615 0.00 0.00 0.00 2.87
2805 4413 7.066887 TGACGCATGGTGATATTTTTAATCTGT 59.933 33.333 0.00 0.00 0.00 3.41
2806 4414 7.416817 TGACGCATGGTGATATTTTTAATCTG 58.583 34.615 0.00 0.00 0.00 2.90
2807 4415 7.566760 TGACGCATGGTGATATTTTTAATCT 57.433 32.000 0.00 0.00 0.00 2.40
2835 4444 6.152831 CCGAAGTTTTCCTCCCAAAAGAATAT 59.847 38.462 0.00 0.00 0.00 1.28
2836 4445 5.475564 CCGAAGTTTTCCTCCCAAAAGAATA 59.524 40.000 0.00 0.00 0.00 1.75
2837 4446 4.280929 CCGAAGTTTTCCTCCCAAAAGAAT 59.719 41.667 0.00 0.00 0.00 2.40
2840 4449 3.219281 TCCGAAGTTTTCCTCCCAAAAG 58.781 45.455 0.00 0.00 0.00 2.27
2846 4455 7.931948 TGATAAATAGATCCGAAGTTTTCCTCC 59.068 37.037 0.00 0.00 0.00 4.30
2876 4485 8.983702 TTTGGTGTTCTTTGTACTACCTTAAT 57.016 30.769 0.00 0.00 0.00 1.40
2878 4487 8.804912 TTTTTGGTGTTCTTTGTACTACCTTA 57.195 30.769 0.00 0.00 0.00 2.69
2918 4527 5.894807 TGTAGTAATCGCTAGGTGGTTTAC 58.105 41.667 0.00 0.00 0.00 2.01
2926 4535 4.680110 CCGATGTTTGTAGTAATCGCTAGG 59.320 45.833 0.00 0.00 40.36 3.02
2933 4542 4.766375 CTCACCCCGATGTTTGTAGTAAT 58.234 43.478 0.00 0.00 0.00 1.89
2935 4544 2.093869 GCTCACCCCGATGTTTGTAGTA 60.094 50.000 0.00 0.00 0.00 1.82
2940 4549 3.590824 GGCTCACCCCGATGTTTG 58.409 61.111 0.00 0.00 0.00 2.93
2996 4605 2.930950 ACTGCTACAAGTTTTGCCAGA 58.069 42.857 9.94 0.00 32.42 3.86
3005 4614 3.508012 CCAGACTGTCTACTGCTACAAGT 59.492 47.826 10.47 0.00 33.40 3.16
3011 4620 2.823154 GACTTCCAGACTGTCTACTGCT 59.177 50.000 10.47 0.00 33.40 4.24
3014 4623 3.075884 GACGACTTCCAGACTGTCTACT 58.924 50.000 10.47 0.00 0.00 2.57
3022 4631 0.520404 TAGCACGACGACTTCCAGAC 59.480 55.000 0.00 0.00 0.00 3.51
3024 4633 1.618861 CTTAGCACGACGACTTCCAG 58.381 55.000 0.00 0.00 0.00 3.86
3027 4636 2.097791 AGATCCTTAGCACGACGACTTC 59.902 50.000 0.00 0.00 0.00 3.01
3030 4639 3.900388 ATAGATCCTTAGCACGACGAC 57.100 47.619 0.00 0.00 0.00 4.34
3034 4643 4.202535 TGGTCCTATAGATCCTTAGCACGA 60.203 45.833 0.00 0.00 0.00 4.35
3045 4654 2.365617 CTGGTGCGTTGGTCCTATAGAT 59.634 50.000 0.00 0.00 0.00 1.98
3046 4655 1.754803 CTGGTGCGTTGGTCCTATAGA 59.245 52.381 0.00 0.00 0.00 1.98
3047 4656 1.754803 TCTGGTGCGTTGGTCCTATAG 59.245 52.381 0.00 0.00 0.00 1.31
3048 4657 1.855295 TCTGGTGCGTTGGTCCTATA 58.145 50.000 0.00 0.00 0.00 1.31
3049 4658 0.981183 TTCTGGTGCGTTGGTCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
3051 4660 0.981183 TATTCTGGTGCGTTGGTCCT 59.019 50.000 0.00 0.00 0.00 3.85
3066 4675 4.603231 TTATTGACGGCGGTTGTTATTC 57.397 40.909 13.24 0.00 0.00 1.75
3069 4678 3.661944 TCTTTATTGACGGCGGTTGTTA 58.338 40.909 13.24 0.00 0.00 2.41
3078 4687 6.750501 TGATCTACGTTTCTCTTTATTGACGG 59.249 38.462 0.00 0.00 35.06 4.79
3103 4712 6.461648 CGTGTGTCTATAGGTTGGATCATTCT 60.462 42.308 0.00 0.00 0.00 2.40
3104 4713 5.692204 CGTGTGTCTATAGGTTGGATCATTC 59.308 44.000 0.00 0.00 0.00 2.67
3115 4724 5.237996 TCGTCTATTTCCGTGTGTCTATAGG 59.762 44.000 0.00 0.00 0.00 2.57
3125 4734 3.858238 GTCTTCCTTCGTCTATTTCCGTG 59.142 47.826 0.00 0.00 0.00 4.94
3129 4738 5.326200 TCCTGTCTTCCTTCGTCTATTTC 57.674 43.478 0.00 0.00 0.00 2.17
3141 4750 2.834549 TCTTCAGTGGATCCTGTCTTCC 59.165 50.000 14.23 0.00 34.02 3.46
3142 4751 3.259374 TGTCTTCAGTGGATCCTGTCTTC 59.741 47.826 14.23 0.00 34.02 2.87
3149 4758 2.087646 GCCTTTGTCTTCAGTGGATCC 58.912 52.381 4.20 4.20 0.00 3.36
3157 4766 1.613255 GGGATTCGGCCTTTGTCTTCA 60.613 52.381 0.00 0.00 0.00 3.02
3158 4767 1.095600 GGGATTCGGCCTTTGTCTTC 58.904 55.000 0.00 0.00 0.00 2.87
3159 4768 0.676782 CGGGATTCGGCCTTTGTCTT 60.677 55.000 0.00 0.00 34.75 3.01
3160 4769 1.078426 CGGGATTCGGCCTTTGTCT 60.078 57.895 0.00 0.00 34.75 3.41
3161 4770 2.761195 GCGGGATTCGGCCTTTGTC 61.761 63.158 0.00 0.00 39.69 3.18
3162 4771 2.750237 GCGGGATTCGGCCTTTGT 60.750 61.111 0.00 0.00 39.69 2.83
3181 4804 1.489230 AGGTTTGTATCCACCGGATCC 59.511 52.381 9.46 0.00 42.11 3.36
3183 4806 1.489230 GGAGGTTTGTATCCACCGGAT 59.511 52.381 9.46 0.43 45.40 4.18
3189 4812 1.695242 ACGTGTGGAGGTTTGTATCCA 59.305 47.619 0.00 0.00 43.34 3.41
3207 4830 5.629849 GTGTTTCTAATATCATCGGAGGACG 59.370 44.000 0.00 0.00 46.11 4.79
3209 4832 5.600898 TGGTGTTTCTAATATCATCGGAGGA 59.399 40.000 0.00 0.00 0.00 3.71
3215 4838 4.755123 CCCGGTGGTGTTTCTAATATCATC 59.245 45.833 0.00 0.00 0.00 2.92
3217 4840 3.775866 TCCCGGTGGTGTTTCTAATATCA 59.224 43.478 0.00 0.00 0.00 2.15
3221 4844 2.356741 CCATCCCGGTGGTGTTTCTAAT 60.357 50.000 0.00 0.00 34.46 1.73
3222 4845 1.003812 CCATCCCGGTGGTGTTTCTAA 59.996 52.381 0.00 0.00 34.46 2.10
3224 4847 1.378762 CCATCCCGGTGGTGTTTCT 59.621 57.895 0.00 0.00 34.46 2.52
3238 4861 3.242291 CCCCGCCTAGTCCCCATC 61.242 72.222 0.00 0.00 0.00 3.51
3240 4863 4.475444 CTCCCCGCCTAGTCCCCA 62.475 72.222 0.00 0.00 0.00 4.96
3253 4876 8.525290 TTTTCAAGATGGAATAAGATTCTCCC 57.475 34.615 0.00 0.00 0.00 4.30
3260 4883 7.415541 CGATGGCTTTTTCAAGATGGAATAAGA 60.416 37.037 9.32 0.00 37.76 2.10
3274 4897 0.097150 GAGACGGCGATGGCTTTTTC 59.903 55.000 16.62 0.00 39.81 2.29
3276 4899 2.100631 CGAGACGGCGATGGCTTTT 61.101 57.895 16.62 0.00 39.81 2.27
3282 4905 1.941734 GAGAAGCGAGACGGCGATG 60.942 63.158 16.62 0.38 38.18 3.84
3283 4906 0.814410 TAGAGAAGCGAGACGGCGAT 60.814 55.000 16.62 0.11 38.18 4.58
3290 4913 4.547532 GTGTCTTGTTTAGAGAAGCGAGA 58.452 43.478 0.00 0.00 34.78 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.