>input_sequence_54774
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---------------------------------------------CTATATAAGTGTGGCTATTTCACACCGT-TTCTGT
GTGTTTGAGATACATGAAAACCTGATAATACTAGCAGCAGTAGTAGCACCAGTTGTCTAGTTGTGTATTTGATCGTACCA
TGGAGCATACAAGAAATGGTGATTTGAAGGTCAGTTATG---AGCAGGAGCTGTTCGGGCGGCGCCGGAACGGCACCTTA
CC------CGCCTACCCGGACCTCACCAGGGAGGCCGTCGCCACCGGCCCGGCTAGGGCGC------CAGTGCCGCCGAA
GAGCACGCCGAGCCGGCGGCGTACTTACGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGTGCAA
TTGACGGCGACAGCAAGGAGAGCTCCGT------CACGCCCATGGAGACTGTGGCCGC------GGGGACGAGGCCAACT
GCGCCGGTGAGCAAGCCGGCATCGACGTGCGCGTCGGCAGCGAGCGCTTGCTCGGGGGCCACTGCCGACAGCCAGACCGT
GCTCCTCCGGGACGCGCGCAGCCACCCGGGATACAGCAGCAAGAAGTGCTGCCTGCAGGTCGCTGCGCTCCTGCGTCCGT
GCTCCGGGAAGCGGGCCGTGCGCGTCAACGGCGGTGC------GACGACGGAGACGACCGAATCGAGCAAGCTGGCGGC-
-----------GAGCAGGATCGAATGGTACAGAGACCTGAGGATGCAGAAGGCTGGCCTCGGGCTAGCCGGAGAAGGCCA
CTGTGGCGTGGTCGCTGGCCTCCCGCCAAATTTGAATCTCGGCTCGTCACAAGTGGCAGCGGTAGGGAGGGGGGAGAAGG
CGGCCGAGTACTCGAGCGCGAGCTTTAGGAAAGGAAGCTTCACTCTTCAGGCTCCCGTCAAAGTCAGCTGTGGCGGA---
GGCGACGACGACGACGATGGCGGGAGCGAGTCGAGCTCAGACCTGTTCGAGATCAAGAGCCTCATGATTGGCGACTGCCC
GTACGAGCCAAGCGAGGCTAGCATCCAGTGGAGCGTGGTGACCGCGAGCGCCGTGGACATGTCCGCCGCGCCGGAGCGCG
GTGGCGGCCGCGGGCGGCCCCCGGTGGCCGTGAGGCAGAACCGGGACCGGCCGGTTGGGCTACTAACGGGGTGCGTGAGC
CGCAGGGCGGTGGATGTGTCGCCTATGGCCGCGGTGCGCAGGTTCCCCGACCCGCCGG----------GGCGCCGGCGCA
TCGATGGGTGACA----CAAGGCGCACAATGCAAATGTGCAAACCCGTAGCTTTCTGCTCGTGTGTCTATGAATTTCATC
T----CTTTTTTTTGCGGGTGTCTATGAATTCCATCTTATTCGTT---------------AGTTACGAATGCCGAAGTGA
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-------------------------------------------------------
>chr1B_1_TraesCS1B01G198800
TCTGTATTCGAGAAAACTTTTCGTAGCTTCTGGCCGAGCGACTGCTAAATGACATAGCCCGCTATTTAAAACTTTTGTTG
CAAAATAGCAAACCGGTGTAAAATATCTACTATAATTATTTTATTCGTAAAAAA-TCAAGTTTTCTAAGTATCGGAACTA
AATGCATATTGTCATGCAAAA-----------------------------------------------------------
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----------------------------------------------------------------------AAAAAGAACT
TTTACGCGAAGGGCATTCAACTAGTTCCATGAAAACGCTTAAAAATGAAGTACTGCACTGGTGCACAACAGTCCACTCCA
GATAGTACTTTGTGTTTCCTTGCCTCCTTACCTGTCATTCAGCACACAAAGAAAAAGAAAAGAAAAAATAATCCTGTATG
TGTC--------CACACAACAACCTTATCATCTCAACTTCATGTCTTACATGCAGACAGGCGTCATTGTTCTCCCAAATT
TCCGGTGTGTCTTACTTGTAATGTACTCCCTCCGTTTTTAAATAATTGTCTTTCTAGAGATTTCAATAAATGACTACATA
CGAAGCAAAATGAGTGAATCTACACTCTAAAACATGTCTACATACATCCGTATGTTGTAGTTTATTTGAGATAGCTAGAA
AGACAATTATTTAGGAACGGAGGAAGTAATGATGAAGAAACGGCCTGTCTTCCCTGTTCAATTAGGCATGTCACTGTCTG
CTTTTTGCACTGCAAAACAGTTTCGACGGAAGTGTTAACGTTAGCAAGAGATCCATCAGAATTCCTGGAGATCCTGTGAC
TTGTGGATGTCGAGGCACCAACCACCACCTCCATCACAAAATTGCACGCTCCGAGCCCAGAATTCCCAAGAAATGTTGCG
AAAAACATATGG----------TCCAATCATTCTGCTTCTCAACCAGTTCACAGCCTCATTATCTCCTCCCTGTTGTCCC
CACTGTTGCTTCACAGGGACAGATTAGCAACAAGCT---TCTTTTT-GATGGATTAACCAAATCA-TTTGATTTACTTTT
TACCAGGATC----------G-TGTTCCAATCATT-TTGTGTCGTCTATATAAGTGTGGCTATTTCACACCGT-TTCTGT
GTGTTTGAGATACATGAAAACCTGATAATACTAGCAGCAGTAGTAGCACCAGTTGTCTAGTTGTGTATTTGATCGTACCA
TGGAGCATACAAGAAATGGTGATTTGAAGGTCAGTTATG---AGCAGGAGCTGTTCGGGCGGCGCCGGAACGGCACCTTA
CC------CGCCTACCCGGACCTCACCAGGGAGGCCGTCGCCACCGGCCCGGCTAGGGCGC------CAGTGCCGCCGAA
GAGCACGCCGAGCCGGCGGCGTACTTACGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGTGCAA
TTGACGGCGACAGCAAGGAGAGCTCCGT------CACGCCCATGGAGACTGTGGCCGC------GGGGACGAGGCCAACT
GCGCCGGTGAGCAAGCCGGCATCGACGTGCGCGTCGGCAGCGAGCGCTTGCTCGGGGGCCACTGCCGACAGCCAGACCGT
GCTCCTCCGGGACGCGCGCAGCCACCCGGGATACAGCAGCAAGAAGTGCTGCCTGCAGGTCGCTGCGCTCCTGCGTCCGT
GCTCCGGGAAGCGGGCCGTGCGCGTCAACGGCGGTGC------GACGACGGAGACGACCGAATCGAGCAAGCTGGCGGC-
-----------GAGCAGGATCGAATGGTACAGAGACCTGAGGATGCAGAAGGCTGGCCTCGGGCTAGCCGGAGAAGGCCA
CTGTGGCGTGGTCGCTGGCCTCCCGCCAAATTTGAATCTCGGCTCGTCACAAGTGGCAGCGGTAGGGAGGGGGGAGAAGG
CGGCCGAGTACTCGAGCGCGAGCTTTAGGAAAGGAAGCTTCACTCTTCAGGCTCCCGTCAAAGTCAGCTGTGGCGGA---
GGCGACGACGACGACGATGGCGGGAGCGAGTCGAGCTCAGACCTGTTCGAGATCAAGAGCCTCATGATTGGCGACTGCCC
GTACGAGCCAAGCGAGGCTAGCATCCAGTGGAGCGTGGTGACCGCGAGCGCCGTGGACATGTCCGCCGCGCCGGAGCGCG
GTGGCGGCCGCGGGCGGCCCCCGGTGGCCGTGAGGCAGAACCGGGACCGGCCGGTTGGGCTACTAACGGGGTGCGTGAGC
CGCAGGGCGGTGGATGTGTCGCCTATGGCCGCGGTGCGCAGGTTCCCCGACCCGCCGG----------GGCGCCGGCGCA
TCGATGGGTGACA----CAAGGCGCACAATGCAAATGTGCAAACCCGTAGCTTTCTGCTCGTGTGTCTATGAATTTCATC
T----CTTTTTTTTGCGGGTGTCTATGAATTCCATCTTATTCGTT---------------AGTTACGAATGCCGAAGTGA
ATGAAAACGCGCATAAAGGAGAGCGGCGTTTTGGCTCCTAGGTGCATATGCCATTGTCGAAATACACATTTCGAAAAATT
GAATAATTCAGAACAAAAATCCCACGTGTATATCCGGACATTTTATGTGCGTTCACAAGGTTTCGATGAAAAACGACGTT
TTTTGTTGCTTGTGTAAAAAAGATAAAGAAATGCCTCGTCAATAGTTAGAATGAAGCATCAGAAATTGTCTTTTTTACAC
AAGCCACAAAAAACGTCGTTTTTCACTAAAACCTTGTGCACGCACATAAAATGTCCGGATATACACGCGGGATTTTTGTT
CCGAATTTTTTAACTTTTCAAAATGTGTATTTCGACAATGGGTGCATATGCACCTAGGAGCCAAATGCAATTACCGCGCA
TAAAGTTGCTAACTATGTTCCTCTATGTATGTACCACGTACTTTTAAGAAGAAGAATTATGAGTTCAACCAGAAAATATC
AATGAAAAAAAAACAGATT-AAAAATATCACCATGCGTCATATATATTCTTTTGGGAGGAAAACTTCGGATCTATTTATC
AACTATTAAGGTAGTACAAAGAACACCAAAAATAAAATCCAGCTCCGTAAACCACCTAGCGATTACTACAAACATCGGGG
TGAGCCGAAGGCGCGGCGCCGTCTTCGCCCCTCCCTCATCGGAGTCTGGCAAAACTTGTAGCAGTAGACAGTCTGGAAGT
CGTCGTGCTAAGGATCTATAGGACCAACGCACCAGAATAACAACCGCCGTCAATAAAGAGAAACGTAGATCAGAATGATC
CAACCTATAGACACACGGAAATAGACGAAGGAAGACAGGATCCACTGAAGACAAAGG--------------CCGAATCCC
GCGGGATCCGGTGGATACAAACCTCCACACGTCCTCCGATGATATTAGAAACACCACCGGGATGGGGACTAGGCGGGGAG
AATCTTATTCCATCTTGAAAAAGCCATCGCCGTCTCGCTTCTCTAAACAAGACAC
>chr1D_1
TCTGTATTCGAGAAAACTTTTCGTAGCTTCTGGCCGAGCGACTGCTAAATGACATAGCCCGTTATTTAAAACTTTTGTTG
CAAAACAACAAACCCGTGTAAAATATCTACTATAATTATTTTATTCATAAAAAAATCAAGTTCTCTAAGTATCGGAATTA
AATGCATATTGTCATGC-AAA-----------------------------------------------------------
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----------------------------------------------------------------------AAAAAGAACT
TTTACGCGAAGGGCATTCAACTAGTTCCATGAAAAAGCTTAAAAATGAAGTACTGGACTGGTGCACAACAGTCCACTCCA
GATAGTACTTTGTGTTTCCTTGCCTCCTTACCTGTCATTCAGCACACAAAGAAAAAGAAAAGAAAAGAAAATCCTGTATG
TGTC--------CACACAACAATCTTATCATCTCAATTTCATGTCTTACATGCAGACAGGCGTCATTGTTCTCCCAAATT
TCCGGTGTGTCTTACTTATAATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATGATCAAGAAACTGCCTGTGTCCCCTGTTCCTTCAGGCATGTCCGTGTCTG
CTTTT-GCACTGCAAAACAGTTTCAACGGAAGTGTTAACGTTAGCAAGAGATCCATCAGAATTCCTGGAGATCCTGTGAC
TTGTGGACGTGGAGGCACCAACCACCACCTCCATCACAAAATTGTATGC------------ATTCCCAAGAAATGTTGCA
AAAA-CATACGG----------TCCAATCATTCTGCTTCTCAACCAGTTCACAGCCTCATTATCTCCTCCCTGTTGTCCC
CACTGTTGCTTCACAGGGACAGATTAGCAACAAGCT---TCTTTTT-GATGGATTAACCAAATCATTTTCATTTACTTTT
TACCGGGATC----------GATGTTCCAATCATG-TTGTGTCGCCTATATAAGTGTGGCTATTTCACACCGT-TTCTGT
GTGTTTGAGATACATGAAAACTTGATAATACTAGCAGCAGTAGCAGCACCAGTTGTCTAGTTGTGCATTTGATTGCACCA
TGGAACACACAAGAAATGGTGATTTGAAGGTCAGTTATG---AGCAGGAGCTGTTCGGGCGGCGCCGGAACGGCAACTTA
CC------CGCCTACCCAGACCTCACCAGGGAGGCCATCGCCACCGGCCCGGCTAGGGGGG------CAGTGCCGCCGAA
GAGCACGCCGAGCCGGCGGCGCACTTACGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGTGCAA
TTGACGGCGACAGCAAGGAGGGTTCCGT------CACGCCCGTGGAGACTCTGGCCAC------GGTGTCGAGGCCAGCT
GTACCGGTGAGCAAGCCGACGTCGACGTGCGCGTCGGCGGCGAGCGCTGGCTCGGGGGCCACTGCCAACAGCCAGACCGT
GCTCCTCCGGGACGCGCGCAGCCACCCAGGATACAGCAGCAAGAAGTGCTGCCTGCAGGTCGCTGCGCTCCTGCGTCCGT
GCTCCGGGAAGCGGGCCGTGCGCGTCAACGGCGGTGC------GGCGACGGAGACGACCGAATCGAGCAAGCTGGCGGC-
-----------GAGCGGGATCGAGTGGTACAGAGACCTGAGGATGCAGAAGGCTGGCCTCGGGCTAGCCGGCGGCAGCCA
CCGTGGCGTGGTGGCTGGCATCCCGCCAAATTTGAATCTCGGCGCTTCACAAGTGGCAGCAGTAGGGAGGGAGGAGAAGG
CGGGCGAGTACTCGAGCGCGAGCTTTAGGAAAGGAAGCTTTACGCTTCAGGCTCCCGTCAAAGTCAGCTGCGGTGGAGGC
GGCGACGACGACGACGATGGCGGGAGCGAGTCGAGCTCGGACCTGTTCGAGATAAAGAGCCTCATGATCGGCGACTGCCC
TTACGAGCCAAGCGAGGCGAGCATCCAGTGGAGCGTGGTGACCGCGAGCGCCGTGGACATGTCCGCCGCGCCGGAGCGCG
GTGGCGGCCGCGGGAGGCCCCAGGTGGACGTGAGGCAGAACCGGGACCGGCCGGTTGGGCTACTAACGGGGTGCGTGAGC
CGCAGGGCGGTGGATGTGTCGCCTATGGCCGCGGTGCGCAGGTTCCCCGACCCGCCGG----------GGCGCCGGCGCA
TCGATGGGTGACACAAGCAAGACGCACAATGCAAATGTGCAAACCCGTAGCTTTCTACTCGTGTGTCTATGAATTCCATC
TTCTTCTTTTTTTCGCGGGTGTCTATGAATTCCATCTTGCTCGTTACTTCCTCATACTGTAGTTACGAATGCCAAACTGA
ATGAAAACGGGCATAGGTTGCTAAAAATATGATAGCAAAGTGC-------------------------------------
--------------------------------------------------------------------------------
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-----------ACTATGTTCCTCTATGTATGTACCACGTACTTTTAAAAAGAAGAATTATGAGTTCAACCAGAAAATATC
CATGCAAAAAAA----ATTAAAAAATATCACCATGCATCATA--------------------------------------
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-------------------------------------------------------
>chr1A_4
---GTATTCGAGAAAACTTTTCGTAGCTTCCAGCA-AGCGGCCGCTAAATGACATACCCCATTATTTAAAACTTTTGTTG
CAAAATAGCAAACCGATGTAAAATATCGACTATAATTATTTTATTCCTAG-AAAATCAAGTTCTCTAAGCATTAGATTTA
AATGCATATTGTTATGCAAAGAAAGAACTTTTTTTAGAACGTTGGCAGGAGGACTGCCAAATTTATTGATCAGAAGAGAA
GTAACAAGAACACCTCCAAAGGAGGAAAGCACTGCAAAAGGGCTAGTGCAGAAAGAAAAGAAAGAAAACAGAAACCCGCC
GGCACCAACACAAACCCAATATCCACCAGCAACCGTGCACATCATCGGAATCCATCGTCGAGGCCTTCAAGATGATGCCT
CCAAGAAGGAAGTGGTATCGAGAACACCACCGTCATCCGATCTGGCTTCTCAGATCTTAGGTTTTCACCCGGAGACCTCA
GCCATGAGGCAGGAAGAGCAATGAGCTCCACGGCGGCACCTCCAAGAAAGAATACGACATCCATAGATGCCGTTACCGTC
TGCACCGACGAGGTCGATGCAAGATTTTCATCCGGAGCCACGCCTTCCACCAACCATCTAGGATCCGAGACCAACCCGGC
ACCACCAGGCAGAACAAGGCCAAGCACACACTACCAGACACGGGATAGTCACCGCCGCACGCAGAACCTAGGCGAGCACA
CGTCAACCTGACCGGTCCGCCCCGCCGCTCGCAGGACCTGGGCGAACCAAATCGACTCCGGCCATCCTCCGGCTCCGTGC
GCAGATCTGGGCGAGAATTTGCACAGCAGCGCACAGGAGAGACCGAAGTAGAACCATAGTTGACCGGCCCGCACCGCCGC
GCGCCGAAACAGAGCAAAAACCAAGACAAAACTAACGTGCTCGCACCGCCGCGCGCAAGGACCGGACCTTCGAGCTGGAT
CTGGTCTACCCGGGCTTCCTCTAGCACCAACAGGCTGGACGGCGCCCCTGTTCCAGGAGCTGGACGTGCACACACTTGCA
AGGGGGAACCCACCAGCATCCACCGGCACCACCGCACACGCCTCCCCTATCCAGGCACCACCGGCCATCGAGATCTGGGC
GCGGGACCGCCCAAACTCAGATCGGGCTTGGAGCCCCTCACCGCCGTGTCGCCCAACCTCCTCGCGCACCGTCGTCGGCC
ACCCAGCAGATCCGCATTGGCGGCGGCGTCGGTGCTCATCCCGCGCCCCGCGCGCTGCCGAGCCACGTCGGGAGCAGCGC
CTGGGCGCCACACAGACATGCCGTCTCGACGAGCCGCCAACATCTCGCCGCCGCGCCAATCGGCCTTTGCCTGCCCTCGT
CCATCGGCAAGCACCAGCACACGCAACCGCAGCGCCAAACCCGTCGCGCCGGTCGGCGCCAGCTCACGTTGCAGCCCCCA
CGCCTCTCCTTAGCCAGGCCGCCCCGCGCAACCAAGGCCTCACGAGAGGGAAGAAGTGCCCCGTTGCCGCCGACACCGCG
CGGGCTTTGCCTGGCGGCGCCTGCCGGGGGCGGCGAGGGGGGAGGAGGGAAGGGGAGGGGTGGCGGCCCGGTGGCTAGGG
TTTCGCCTGGGTCGCCTGCGGGGGGCAACACGGATGTCCTTTCTTTACAGTACTTACTACTAGTAGCGATAAAAAGAACT
TTTACGCGAAGGGCATTCAACTAGTTCCGTGAAAAAGCTTTAAAATGAAGTACTGAACTGGTGCACAACAGTCCATTCCA
GATAGTACTTTGTGTTTCCTTGCCTCCTTACCTGTCAGTCAACACACAAAGAAAAAGAGAAGAAAAGAAAATCCTGTATG
TGTCCACAGTTGCACACAACAACCTTATCATCTCAATTTCATGTCTTACATGCAGACAGGCGTCATTGTTCCCCCAAATT
TCCGGTGTGTCTTACATGTAATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATGATCAAGAAACTGCCTGTGTTCCCTGTTCCTTCAGGCATGTCAGTGTCTG
CTTTT-GCACTGCAAAACAGTTTCAACGGGAGTGTTAACGTTAGCAAGAGATCCATCAGAATTCCTGGAGATCCTGTGAC
TTGCGGACGTGGAGGCACCAACCACCACCTCCATCACAAAATTGCATGC------------ATCCCCAAGAAATGTTGCG
AAAA-CATACGG----------TCCAATCATTCTGCTTCTCAACCAGTTCACAGCCTCATTATCTCCTCCCTGTTGTCCC
CACTGTTGCTTCACAGGGACAGATTAGCAACAAGCT---TCTTTTTTGATGGATTAACCGAATCATTCTCATTTACTTTT
TACCAGGATC----------G-TGTTCCAATCATG-TTGTGTTGCCTATATAAGTGTGGCTATTTCACACCGT-TTCTGT
GTGTTTGAGATACATGAAAACTTGATAATACTAGCAGCAGTAGCAGCACCAGTTGTCTAGTTGTGCATTTGATTGCACCA
TGGAGCACACAAGAAATGGTGATTTGAAGGTCAGTTATG---AGCAGGAGCTGTTCGGGCGGCGCCGGAACAGCACCTTA
CC------GGCCTACCCGGATCTCATCAGGGAGGGCATGGCCACCGGCCCGGCTAGGGCGC------CAGTGCCGCCGAA
GAGCACGCCGAGCCGGCGGCGCACTTACGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGTGCAA
TGGACGGTGACAGCAAGGAGGGCTCCGC------CACGCCTGTGGAGACTGTGGCCAC------GGTGTCGAGGCCAGCT
GTGCCGGCGAGCAAGCCGACGTCGACGTGCGCGTCGGCGGCGAGCGCTGGCTCGGCGGCCACTGCCAACAGCCAGACCGT
GCTCCTCCGGGACGCGCGCAGCCACCCGGGATACAGCAGCAAGAAGTGCTGCCTGCAGGTCGGGGCGCTCCTGCGTCCGT
GCTCCGGGAAGCGGGCCGTGCGCGTTAACGGCGGCCC------GGCGACGGAGACGACAGAATCGAGCAAGCTGGCGGC-
-----------GAGCGGGGTCGAGTGGTATAGAGACCTGAGGATGCAGAAGGCTGGCCTCGGGCTAGCCGGCGGCAGCCA
CCGTGGTGTGGTGGCTGGCCTCCCGCCAAATTTGAATCTCGGCGCTTCACAAGTGGCAACAGTAGGGAGGGAGGAGAAGG
CGGTCGAGTACTCGAGCGCGAGCTTTAGGAAAGGAAGCTTCACTCTTCAGGCTCCGGTCAAAGTCAGCTGCGGCGGAGGC
GACGACGACGACGACGATGGCGGGAGCGAGTCGAGCTCGGACCTGTTCGAGATCAAGAGCCTCATGATCGGCGACTGCCC
GTACGAGCCAAGCGAGGCGAGCATCCAGTGGAGCGTGGTGACCGCGAGCGCCGTGGACATGTCCGCCGCGCCGGAGCGCA
GTGGCGGCCGCGGGAGGCCCCCGGTGGCCGTGAGGCAGAACCGGGACCGGCCGGTTGGGCTACTAACGGGGTGCGTGAGC
CGCAGGGCAGTGGATGTGTCGCCTATGGCCGCGGTGCGCAGGTTCCCCGACCCGCCGG----------GGCGCCGGCGCA
TCGATGGGTGACA----CAAGGCGCACAATGCAAATGTGCAAACCCGTAGCTTTCTGCTCGTGTGTCTATGAATTCCATC
TTTTTTTTTTCGGGTGTC----CTATGAATTCCATCTTGTTCGTTACTTCCTCATACTCTAGTTACGAATGCCGAACTGA
ATGAAAACGGGCACAGGTTGCTAAAAATATGATAGCAAAGTGC-------------------------------------
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-----------ACTATGTTCCTCTATGTATGTACCACGTACTTTAAAAAAGAAGAATTATGAGTTCAACCAGAAAATATC
CATGCAAAAAAA----ATT-AAAAATATCACCATGCATCATTT---TTTTTTTGCGAGGAAAACTTCCGATCTATTCATT
AACTGTCAAGGTAGTACAAAGAACACCAAAAATAAAATCCAGCTCCATAAACCATCTAGCGGTGACTATAAGCACTAGAG
CGAGTCGAAGGTGCGCCGACGTCT-------TCCCTCATCGGAGCCTGGCAAACCTTGTTGCGGTAGACAAT-TGAAAAT
CGCCGTGCTAAGGCCGCGTGGGACCAACGCACCAAAACAACAACCGTCGCCGATAAAGAGAGGCGTAGATCGAAATGATC
CAATCTATAGACATACGAAAATAGACGAACAAAGACATGATCCACGTGGATCCACTAAAAACAAACACCGACCGAATCCC
GTGAGTTCCGCCGGATACAAACCTCCACATGCCCTCCAACGATGCTGGAAACACCACCGGAACGGGGACTAGGCGAGGAG
AACCTTATTCCATCTTCAGAGAGCTGTCGCCTCCTCGCCTCTCT-----------
>chr4B_644
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-------------------------------------------------------------TTACGCATGTCACTGTCAG
CTTC--GCACTGCAAAACAGTTTCAAGGGAAGTGTTAACGTTAACAAGAGTTCTATCAGAATTCCAGGAGTTCCTGTGAC
TTGTGGATGTCGAGGCACCAACAACCACCATGATCAG---ATTGCTTGCTCCGAGTCTAGAATTCCCAAGAAACGTTGCG
AAAA-CATATGGCCGTCAGTGCTCCAACCATTCTG-TTTTCGACCAGTTCACAGCCTCATTAACTCCTCTCTGTTTCCCC
-ACAGTAGCTTCACAGAGACGGATTAGCAGCAAACT---TCTTTTT-GGTCTATTGACCAGCTCATTTTGATCTTTGTAC
AACAAAAGTTTGTGAAA-ATG-TGTTCCAATATGT-TCGGGCTGTCTATATAACTGTGGCTATTTCACACCATCTTCTGT
GTGCATGTGACATATGCAGACTTGATACAG------------------------------------------------CA
TGGAGCACACAAGAAATGGTGATCTGAAAGTCAGCTATGAGCAGCGGGAGCTGTTCGGGCGGCGCCGGAACAGCACCTCG
CCGTCGCTCGCCTACGTCGACCTCACTGGGGAGGCCGTGGACAGCCGCCCGGCAGCGGCAAGGGTGTCATTGCCGCCGAA
GAGCACCCCGAGCCGGCAGGGCACTTGCGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGCGCAA
TGGATGGCCACCACCAGGAGGGCCCCGCCACGCCCACGCGCGTGGAGGCTGTGGCCGC------GGGGGCGAGGCCAGCT
GTGCCGGTGAGCGAGCCGGCGTGGAAGCGCACGTCGTCGGCGAGCGCCGGCTCGGTGGGCAGCGCCAACAGCCAGACCGT
TCTCCTACGGGATGCGCGCCGCCGCCCGCGATACCGCTGCATGAAGTGCTGCCTCCAGGTAGGCGTGCTCCTGCGTCTGT
GCTCCGGGAAGCGGGCCGTGCGCGTAGACGGCGCG------------------ACCGCCGGATCGAGCAAGCTGGCGGCA
TCGGCGACGGCGAGCAATATCGAGTGGTACAAAGACCTGCGGAGGGAGAAGGCTGGCCTCGGGCTAACCGGAGACGGCCA
CCGTGGCGTGGTTGCTGGCCTCCCGCCAAATTTGAATCTCGGGGCATCAGGAGTGGCAGCCGTAGGGAGGGAAGAGAAGC
AGGGCGAGTACACGAGCGCGAGCTGTAGGAGAGGAAGCTTCACTCTTCCAGCTCCGGTGAAAGTCAGCTGCGGCAGAGGC
GGCGG---CGACGACGACGGCGGGAGCGAGTCGAGCTCGGACCTGTTCGAGATCAAGAGCCTAATGATCGACGACTGCCC
GCACGAGCCCAGCGAGGAAAGCGTCCAGTGGAGCGTGGTGACCGCGAGCGCG---------------------------G
GTGGCGGCCGCACCGGCGCCCCGGTGGCCGTGACGCAGAACAGGGACAGTCCGGTTGGGATATTGACAGGGTGGCTGAGC
CGCGGGCCGGTGGATGTGTCGGCGGTGGCCGAGGTTTGCAGGTTCCCCGACCCGTCGGCGTCGGCGTCGGCACCGGCGCA
TTGATGGGTAGCA----CAAGGCGTAGAATGCA-----------------------------------------------
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-------------------------------------------------------
>chr4A_644
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-------------------------------------------------------------TTAGGTATGTCACTGTCAG
CTTC--GCACTGCAAAACAGTTTCAAGGGAAGTGTTAACGTTAACAAGAGTTCTATCAGAATTCCATGAGTTCGTGTGAC
TTGCGGATGTCGAGGCACCAACCACCGCCATCATCAG---ATTGCTTGCTCCGAGTCTAGAATTCCCAAGAAACGTTGCG
AAAA-CATATGGCCATCAGTGCTCCAACCATTCTG-TTTTCGACCAGTTCACGGCATCATTAACTCCTCCCTGTTTCCCA
-ACAGTAGCTTCACAGAGACGGATCAGCAGCAAACTGATTCTTTTT-GGTCCATTGGCCAAATCATTTTGATCTTTGCAC
AACAAAAGACTGTGAAAAATG-TGTTCCAATATTTTTTGGGCTGTCTATATAAGTGTGGCTATTTCACACCATCTTCGGT
GTGTTTGTGACATATGCAGACTTGATACAG------------------------------------------------CA
TGGAGCACACAAGAAATGGTGATCTGAAGGTCAGCTATGAGCAGCAGGAGCTGTTCGGGCGGCGCCCGAACGGCACCTCG
CC------CGCCTCCATCGACCTTGCCAGGGAGGCCGTGGACAGCCGCCCGGCAACGGCAAGGGTGACATCGCCGCCGAA
GAACACCCCGAGCCGGCAGGGCGCTTGCGCTGACGGCGAGCTCGACGTGTTCTCGGCCGAGCGTTACTTCAAGGGCGCAA
TGGACGGCCACCAGCAGGAGGGCCCCGCCACGCCCACGCGCGTGGAGGCTGTGGCCGCGGGGGCGGGGGCGAGGCCAGCC
GTGCCGGTGAGCGAGCCGGCATGGACGCGTGCGTCGTCGGCGAGCGCCGGCTCGGTGGGCAGCGCCTACAGCCAGACCGT
TCTCCTCCGGGATGCGCGCCGCCGCCGGAGATACCACTGCATGAAGTGCTGCCTCCAGGTCGGCGTGCTCCTGCGTCTCT
GCTCCGGGAAGCGGGCCGTGCGCGTGGACGGCGCGACCGCCGTGGCGACGGAGACCGCCGGATCGAGCAAGCTGGCGGCA
TCGGCGACAGCGAGCAATATCGAGTGGTACAAAGACCTGAGGAGGGAGAAGGCTGGCCTCGGGCTAACCGGGGACGGCCG
CCGTGGCGTCGTTGCCGGCCTCCCGCCAAATTTGAATCTCGGGGCAGCAGGAGTGGCAGCCGTAGGGCAGCAAGAGAAGG
GGGGCGAGTACACGAGCGCGAGCTGTAGGAGAGGAAGCTTCACTCTTCCTGCTCCGGTGAAAGTCAGCTGCGGCAGAGGC
GGCGGT---GACGACGAGGGCGGGAGCGAGTCGAGCTCGGACCTGTTCGAGATCAAGAGCCTAATGATCGACGACTGCCC
GCACGAGCCCGGCGAGGAAAGCGTCCAGTGGAGCGTGGTGACCGCGAGCGCG---------------------------G
GTGGCGGCCGCTCCGGCGCCCCGGTGGCCGTGACGCAGGACAGAGACAGTCCGGTTGGGATATTGACAGGCTGCCTGAGC
CGCGGGCCGGTGGATGTGTCGGCGGTGGCCGGGGTGTGCAGGTTCCCCGACCCATCGGCGTCGGCG------CCGGCGCA
TTGATGGGTAGCA----GAAGGCGTAGAATGCAGTTATGCAA--------------------------------------
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-------------------------------------------------------
>chr4D_678
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---------------AACAGTTTCAAGGGGAGTGTTAACGTTAACAAGAGTTCTATCAGAATTCCAGGAATACCTGTGAC
TTGTGGATGTCGAGGCACCAACAACCACCATGATCAG---ATTGCTTGCTCCGAGTCTAGAATTCCCAAGAAACGTTGCA
GAAA-CATATGGCCATCAGTGCTCCAACCATTCTG-TTTTCGACCAGTTCACAGCATCATTAACTCGTCCCTGTTTTCCC
-ACAGTAGCTTCACAGAGACGGATCAGCAGCAGACT---TCTTTTT-GATCGATTGACCACATCATTTTGATCTTTGTAC
AACAAAAGATTGTGAAA-ATG-TGTTCCGATATTT-TTGGGCTGTCTATATAAGCGTGGGTATTTCACACCATCTTCTGT
GTTTTT-TGACATATGCAGACTTGGTACAG------------------------------------------------CA
TGGAGCACACAAGAAATGGTGATCTGAAGGTCAGCTATGAGCAGCAGGAGCTGTTCGGGCGGCGCCGGAACGGCACCTCG
CC------CGCCTCCGTCGACCTCACCAGGGAGGCCGTGGACAGCGGCCCGGAAACGGCAAGGGTTCCATCGCCGCCGAA
GAGCACCCCGAGCCCGCAGGGCACTTGCGCTGACGGCGAGCTCGACGTGTTCTCGGCTGAGCGTTACTTCAAGGGCGCAA
TGGACGGCCACCACCAGGAGGGCCCCGCCACGCCCACGCGCGTGGAGGTTGTGGCCGC------GGGGGCGAGGCCAGCT
GTGCCGGTGAGCGAGCCGGCGTGGACGCGCGCGTCGTCGGCGAGCGCCGGCTCGGTGGGCAGCGCCTACAGCCAGACCGT
TCTCCTCCGGGATGCGCGCCGCCGCCCGCGATACCGCTGCATGAAGTGCTGCCTCCAGGTCGGCGTGCTCCTGCGTCTGT
GCTCCGGGAAGCGGGCCGTGCGCGTAGACGGCGCGGCCGCCGTGGCGACGCAGACCGCCGGATCGAGCAAGCTGGCGGCA
TCGGCGACGGCGAGCAATATCGAGTGGTACAAAGACCTGCGGAGGGAGAAGGCTGGCCTCGGGCTAACCGGAGACGGCCA
CCGTGGCGTGGTTGCTGGCCTCCCGCCAAATTTGAATCTCGGGGCATCAGGAGTGGCAGCCGTAGGGAGGGAAGAGAAGC
AGGGCGAGTACACGAGCGCGAGCTGTAGGAGAGGAAGCTTCACTCTTCCAGCTCCGGTGAAAGTCAGCTGCGGCAGGGGC
GGCGG---CGACGACGACGGCGGGAGCGAGTCGAGCTCGGACCTGTTCGAGATCAAGAGCCTAATGATCGACGACTGCCC
GCACGAGCCCAGCGAGGAAAGCGTCCAGTGGAGCGTGGTGACCGCGAGCGCG---------------------------G
GTGGCGGCCGCACCGGCGCCCCGGTGGCCGTGACGCAGAACAGAGACAGTCCGGTTGGGATATTGACAGGGTGCCTGAGC
CGCGGGCCGGTGGATGTTTCGGCGGTGGCCGGGGTGTGCGGGTTCCCCGACCCGTCGGCCCT------------GGCGCA
TTGATGG-TAGCA----CAAG-----------------------------------------------------------
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-------------------------------------------------------
>SNPs
-------------------------------------------------------------S------------------
----------------------------------------------S---------------S--------------S--
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-----------------------------------S-------------------S------------------------
------------------------------------------------------------------S-S-----------
------------------------------------S-------------------------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S------S----------SS-------------------
-----S------------------S-------------------------------------------------------
----------------------------------------------S--------S-S----------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S---------------------S---------------------S-------S-S----
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------S--------------------S--------------------------S--------S--
-S------------------------------------S---------S-----------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-----------------------S--------------------------------------------------S-----
-S----------S------------------------------S-S--------------S----------S--------
---S------------------------------------------------------------------S---------
--------------------------------------S-----------------------------S-----------
------------------S-------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------S------------------------S-------------------------------------S---
---------S-----SSSSSSSSSSSSSS-SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------------------------------S--------------------------------
S---S-------SSSS--------------------S------SSS--S-----S------------S--------S--S
----S-S---------------------------------------S-------S------S-S----S--S--SSS-S-
S---S------S---S--S-----SSSSSSS-------------S--------S-----S--S-------S-S--S--S-
--S----------SSSSS-S--------------S--S--------S--S-S---------SS--------SS-------
---S---------S---S-----------SS------S-------SSSSSS-S-SSS-----------------------
-S-S-S----SS-----------------S-S-----S-S---SS-S-------------S-S------------S----
--S-------------S-S-S---SS-----SS-----S-----SSSSSSSSSSS
>forward_2141
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-----------------------------------------GGCCTGTCTTCCCTGTTCAA-------------------
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-------------------------------------------------------
>reverse_4226
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CGCGGGATTTTTGTT
CCGAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
