Multiple sequence alignment - TraesCS1B01G198100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G198100 chr1B 100.000 3233 0 0 1 3233 356283582 356280350 0.000000e+00 5971.0
1 TraesCS1B01G198100 chr1B 76.331 338 74 6 18 352 621445631 621445965 3.310000e-40 176.0
2 TraesCS1B01G198100 chr1A 94.489 1869 46 15 628 2458 330686547 330688396 0.000000e+00 2828.0
3 TraesCS1B01G198100 chr1D 94.220 1834 75 10 628 2435 256971457 256973285 0.000000e+00 2771.0
4 TraesCS1B01G198100 chr1D 78.671 647 100 25 2565 3185 213374391 213373757 2.340000e-106 396.0
5 TraesCS1B01G198100 chr1D 76.695 708 118 25 2503 3185 131630897 131630212 1.850000e-92 350.0
6 TraesCS1B01G198100 chr1D 81.633 98 13 5 3095 3189 163704707 163704802 3.460000e-10 76.8
7 TraesCS1B01G198100 chr1D 100.000 39 0 0 873 911 256971735 256971697 4.470000e-09 73.1
8 TraesCS1B01G198100 chr3D 89.324 562 57 1 1 562 74445675 74446233 0.000000e+00 702.0
9 TraesCS1B01G198100 chr3D 89.165 563 59 2 1 562 18798228 18798789 0.000000e+00 701.0
10 TraesCS1B01G198100 chr3D 77.419 713 125 16 2496 3185 451893994 451894693 3.020000e-105 392.0
11 TraesCS1B01G198100 chr3D 91.667 60 5 0 563 622 527563038 527563097 2.070000e-12 84.2
12 TraesCS1B01G198100 chr7B 85.409 562 82 0 1 562 535693834 535693273 4.650000e-163 584.0
13 TraesCS1B01G198100 chr7B 79.126 709 111 26 2503 3185 707963833 707963136 3.800000e-124 455.0
14 TraesCS1B01G198100 chr7B 77.353 680 118 19 2539 3185 145727497 145728173 1.420000e-98 370.0
15 TraesCS1B01G198100 chr7B 92.188 64 4 1 559 622 381917866 381917928 4.440000e-14 89.8
16 TraesCS1B01G198100 chr7B 92.188 64 4 1 559 622 381920361 381920423 4.440000e-14 89.8
17 TraesCS1B01G198100 chr7B 92.188 64 4 1 559 622 381942412 381942474 4.440000e-14 89.8
18 TraesCS1B01G198100 chr6B 85.409 562 81 1 1 562 620278094 620277534 1.670000e-162 582.0
19 TraesCS1B01G198100 chr6B 79.045 649 95 27 2565 3185 65134609 65133974 1.080000e-109 407.0
20 TraesCS1B01G198100 chr6B 75.063 397 60 25 2807 3186 568448693 568448319 7.230000e-32 148.0
21 TraesCS1B01G198100 chr3B 79.669 605 95 19 2504 3093 671576560 671577151 8.350000e-111 411.0
22 TraesCS1B01G198100 chr3B 83.516 91 14 1 3095 3185 819808528 819808617 2.070000e-12 84.2
23 TraesCS1B01G198100 chr4D 78.783 608 99 20 2503 3096 468394451 468395042 6.550000e-102 381.0
24 TraesCS1B01G198100 chr4D 77.985 536 91 17 2670 3185 96514537 96514009 8.710000e-81 311.0
25 TraesCS1B01G198100 chr4B 77.280 669 123 22 2540 3186 481491889 481491228 1.830000e-97 366.0
26 TraesCS1B01G198100 chr6D 76.869 709 120 25 2503 3182 390005340 390004647 8.530000e-96 361.0
27 TraesCS1B01G198100 chr6D 80.514 467 74 16 2542 2999 58531339 58530881 3.090000e-90 342.0
28 TraesCS1B01G198100 chrUn 80.810 469 74 10 2542 2999 45258883 45258420 1.430000e-93 353.0
29 TraesCS1B01G198100 chr2B 80.942 467 71 12 2545 2999 651134569 651134109 1.430000e-93 353.0
30 TraesCS1B01G198100 chr2B 77.960 549 98 13 2659 3190 198516159 198515617 4.020000e-84 322.0
31 TraesCS1B01G198100 chr5D 79.528 508 83 13 2503 2999 423231380 423231877 3.090000e-90 342.0
32 TraesCS1B01G198100 chr5D 81.176 170 20 7 3028 3185 294426119 294425950 3.390000e-25 126.0
33 TraesCS1B01G198100 chr7D 79.878 492 74 18 2713 3185 179526215 179526700 1.440000e-88 337.0
34 TraesCS1B01G198100 chr2D 79.331 508 81 14 2503 2999 68737186 68736692 5.170000e-88 335.0
35 TraesCS1B01G198100 chr2D 78.269 543 94 14 2659 3184 568947067 568947602 8.650000e-86 327.0
36 TraesCS1B01G198100 chr5B 78.937 508 86 13 2503 2999 617174534 617174037 3.110000e-85 326.0
37 TraesCS1B01G198100 chr4A 78.269 543 87 16 2659 3185 705177207 705177734 1.450000e-83 320.0
38 TraesCS1B01G198100 chr4A 84.058 69 9 2 563 629 563094915 563094983 7.490000e-07 65.8
39 TraesCS1B01G198100 chr3A 78.022 546 90 19 2659 3186 108507810 108508343 1.870000e-82 316.0
40 TraesCS1B01G198100 chr5A 92.727 55 4 0 3129 3183 311985614 311985668 2.670000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G198100 chr1B 356280350 356283582 3232 True 5971 5971 100.000 1 3233 1 chr1B.!!$R1 3232
1 TraesCS1B01G198100 chr1A 330686547 330688396 1849 False 2828 2828 94.489 628 2458 1 chr1A.!!$F1 1830
2 TraesCS1B01G198100 chr1D 256971457 256973285 1828 False 2771 2771 94.220 628 2435 1 chr1D.!!$F2 1807
3 TraesCS1B01G198100 chr1D 213373757 213374391 634 True 396 396 78.671 2565 3185 1 chr1D.!!$R2 620
4 TraesCS1B01G198100 chr1D 131630212 131630897 685 True 350 350 76.695 2503 3185 1 chr1D.!!$R1 682
5 TraesCS1B01G198100 chr3D 74445675 74446233 558 False 702 702 89.324 1 562 1 chr3D.!!$F2 561
6 TraesCS1B01G198100 chr3D 18798228 18798789 561 False 701 701 89.165 1 562 1 chr3D.!!$F1 561
7 TraesCS1B01G198100 chr3D 451893994 451894693 699 False 392 392 77.419 2496 3185 1 chr3D.!!$F3 689
8 TraesCS1B01G198100 chr7B 535693273 535693834 561 True 584 584 85.409 1 562 1 chr7B.!!$R1 561
9 TraesCS1B01G198100 chr7B 707963136 707963833 697 True 455 455 79.126 2503 3185 1 chr7B.!!$R2 682
10 TraesCS1B01G198100 chr7B 145727497 145728173 676 False 370 370 77.353 2539 3185 1 chr7B.!!$F1 646
11 TraesCS1B01G198100 chr6B 620277534 620278094 560 True 582 582 85.409 1 562 1 chr6B.!!$R3 561
12 TraesCS1B01G198100 chr6B 65133974 65134609 635 True 407 407 79.045 2565 3185 1 chr6B.!!$R1 620
13 TraesCS1B01G198100 chr3B 671576560 671577151 591 False 411 411 79.669 2504 3093 1 chr3B.!!$F1 589
14 TraesCS1B01G198100 chr4D 468394451 468395042 591 False 381 381 78.783 2503 3096 1 chr4D.!!$F1 593
15 TraesCS1B01G198100 chr4D 96514009 96514537 528 True 311 311 77.985 2670 3185 1 chr4D.!!$R1 515
16 TraesCS1B01G198100 chr4B 481491228 481491889 661 True 366 366 77.280 2540 3186 1 chr4B.!!$R1 646
17 TraesCS1B01G198100 chr6D 390004647 390005340 693 True 361 361 76.869 2503 3182 1 chr6D.!!$R2 679
18 TraesCS1B01G198100 chr2B 198515617 198516159 542 True 322 322 77.960 2659 3190 1 chr2B.!!$R1 531
19 TraesCS1B01G198100 chr2D 568947067 568947602 535 False 327 327 78.269 2659 3184 1 chr2D.!!$F1 525
20 TraesCS1B01G198100 chr4A 705177207 705177734 527 False 320 320 78.269 2659 3185 1 chr4A.!!$F2 526
21 TraesCS1B01G198100 chr3A 108507810 108508343 533 False 316 316 78.022 2659 3186 1 chr3A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 796 0.390735 CACCTACGAAACTTCCCCGG 60.391 60.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 2554 0.107848 AACTTTATGACGGCGGAGGG 60.108 55.0 13.24 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.753272 TCTTCTTACAGCATTGGACAAGC 59.247 43.478 0.00 0.00 0.00 4.01
34 35 1.725641 TACAGCATTGGACAAGCTCG 58.274 50.000 0.00 0.00 36.26 5.03
37 38 2.787249 CATTGGACAAGCTCGGCG 59.213 61.111 0.00 0.00 0.00 6.46
64 65 2.338500 ACGAAGTTCTCCGAAATGCTC 58.662 47.619 0.56 0.00 37.78 4.26
67 68 0.608640 AGTTCTCCGAAATGCTCCGT 59.391 50.000 0.00 0.00 0.00 4.69
73 74 0.807667 CCGAAATGCTCCGTCCAGAG 60.808 60.000 0.00 0.00 36.92 3.35
136 137 1.079543 CTGAAGCCGAGTGGTGAGG 60.080 63.158 0.00 0.00 37.67 3.86
145 146 3.948719 GTGGTGAGGCCCCGACAA 61.949 66.667 0.00 0.00 36.04 3.18
151 152 1.303282 GAGGCCCCGACAAAGGATT 59.697 57.895 0.00 0.00 0.00 3.01
175 176 0.596577 CGTCACCGTTCTGGAGAGAA 59.403 55.000 0.00 0.00 38.08 2.87
238 239 2.042537 AGGAGAGCGATGAGGGCA 60.043 61.111 0.00 0.00 0.00 5.36
250 251 2.610859 AGGGCACGGTTGATCCCT 60.611 61.111 0.00 0.00 43.98 4.20
253 254 2.668632 GCACGGTTGATCCCTCCA 59.331 61.111 0.00 0.00 0.00 3.86
256 257 1.026718 CACGGTTGATCCCTCCAAGC 61.027 60.000 0.00 0.00 38.30 4.01
412 413 3.755628 CGGACTTCGGAGCGGGAA 61.756 66.667 0.00 0.00 34.75 3.97
525 527 1.187087 AGCTAGTTGGCGTAGAAGCT 58.813 50.000 0.00 0.00 35.55 3.74
528 530 2.186076 CTAGTTGGCGTAGAAGCTTCG 58.814 52.381 20.43 11.07 37.29 3.79
556 558 0.602905 CCTCCTTGTCGTTGTGGGAC 60.603 60.000 0.00 0.00 34.99 4.46
570 572 2.450609 TGGGACACGAGAGTTTTAGC 57.549 50.000 0.00 0.00 46.40 3.09
571 573 1.689813 TGGGACACGAGAGTTTTAGCA 59.310 47.619 0.00 0.00 46.40 3.49
572 574 2.067013 GGGACACGAGAGTTTTAGCAC 58.933 52.381 0.00 0.00 46.40 4.40
573 575 2.067013 GGACACGAGAGTTTTAGCACC 58.933 52.381 0.00 0.00 46.40 5.01
574 576 2.547218 GGACACGAGAGTTTTAGCACCA 60.547 50.000 0.00 0.00 46.40 4.17
575 577 3.128349 GACACGAGAGTTTTAGCACCAA 58.872 45.455 0.00 0.00 46.40 3.67
576 578 3.537580 ACACGAGAGTTTTAGCACCAAA 58.462 40.909 0.00 0.00 46.40 3.28
577 579 3.311596 ACACGAGAGTTTTAGCACCAAAC 59.688 43.478 0.00 0.00 46.40 2.93
578 580 3.560068 CACGAGAGTTTTAGCACCAAACT 59.440 43.478 7.44 7.44 46.40 2.66
579 581 4.748102 CACGAGAGTTTTAGCACCAAACTA 59.252 41.667 7.65 0.00 46.40 2.24
580 582 5.235616 CACGAGAGTTTTAGCACCAAACTAA 59.764 40.000 7.65 0.00 46.40 2.24
581 583 5.818857 ACGAGAGTTTTAGCACCAAACTAAA 59.181 36.000 7.65 0.00 46.40 1.85
582 584 6.134061 CGAGAGTTTTAGCACCAAACTAAAC 58.866 40.000 7.65 0.00 43.16 2.01
583 585 6.238266 CGAGAGTTTTAGCACCAAACTAAACA 60.238 38.462 7.65 0.00 43.16 2.83
584 586 7.519970 CGAGAGTTTTAGCACCAAACTAAACAT 60.520 37.037 7.65 0.00 43.16 2.71
585 587 7.425606 AGAGTTTTAGCACCAAACTAAACATG 58.574 34.615 7.65 0.00 43.16 3.21
586 588 5.983118 AGTTTTAGCACCAAACTAAACATGC 59.017 36.000 6.23 0.00 41.68 4.06
587 589 5.521906 TTTAGCACCAAACTAAACATGCA 57.478 34.783 0.00 0.00 35.28 3.96
588 590 5.521906 TTAGCACCAAACTAAACATGCAA 57.478 34.783 0.00 0.00 35.51 4.08
589 591 3.716601 AGCACCAAACTAAACATGCAAC 58.283 40.909 0.00 0.00 35.51 4.17
590 592 2.470999 GCACCAAACTAAACATGCAACG 59.529 45.455 0.00 0.00 33.27 4.10
591 593 3.701241 CACCAAACTAAACATGCAACGT 58.299 40.909 0.00 0.00 0.00 3.99
592 594 3.728718 CACCAAACTAAACATGCAACGTC 59.271 43.478 0.00 0.00 0.00 4.34
593 595 3.378742 ACCAAACTAAACATGCAACGTCA 59.621 39.130 0.00 0.00 0.00 4.35
594 596 3.974401 CCAAACTAAACATGCAACGTCAG 59.026 43.478 0.00 0.00 0.00 3.51
595 597 4.497340 CCAAACTAAACATGCAACGTCAGT 60.497 41.667 0.00 0.00 0.00 3.41
596 598 4.893424 AACTAAACATGCAACGTCAGTT 57.107 36.364 0.00 2.37 42.15 3.16
597 599 4.468095 ACTAAACATGCAACGTCAGTTC 57.532 40.909 0.00 0.00 38.79 3.01
598 600 4.127171 ACTAAACATGCAACGTCAGTTCT 58.873 39.130 0.00 0.00 38.79 3.01
599 601 5.294356 ACTAAACATGCAACGTCAGTTCTA 58.706 37.500 0.00 0.00 38.79 2.10
600 602 5.932303 ACTAAACATGCAACGTCAGTTCTAT 59.068 36.000 0.00 0.00 38.79 1.98
601 603 4.668576 AACATGCAACGTCAGTTCTATG 57.331 40.909 0.00 0.00 38.79 2.23
602 604 3.925379 ACATGCAACGTCAGTTCTATGA 58.075 40.909 0.00 0.00 38.79 2.15
603 605 3.679980 ACATGCAACGTCAGTTCTATGAC 59.320 43.478 0.00 0.00 45.01 3.06
604 606 3.660501 TGCAACGTCAGTTCTATGACT 57.339 42.857 5.43 0.00 46.04 3.41
605 607 4.776795 TGCAACGTCAGTTCTATGACTA 57.223 40.909 5.43 0.00 46.04 2.59
606 608 5.324784 TGCAACGTCAGTTCTATGACTAT 57.675 39.130 5.43 0.00 46.04 2.12
607 609 5.340803 TGCAACGTCAGTTCTATGACTATC 58.659 41.667 5.43 0.00 46.04 2.08
608 610 4.438145 GCAACGTCAGTTCTATGACTATCG 59.562 45.833 5.43 0.00 46.04 2.92
609 611 4.815040 ACGTCAGTTCTATGACTATCGG 57.185 45.455 5.43 0.00 46.04 4.18
610 612 4.197750 ACGTCAGTTCTATGACTATCGGT 58.802 43.478 5.43 0.00 46.04 4.69
611 613 4.035324 ACGTCAGTTCTATGACTATCGGTG 59.965 45.833 5.43 0.00 46.04 4.94
612 614 4.272748 CGTCAGTTCTATGACTATCGGTGA 59.727 45.833 5.43 0.00 46.04 4.02
613 615 5.049336 CGTCAGTTCTATGACTATCGGTGAT 60.049 44.000 5.43 0.00 46.04 3.06
614 616 6.147328 CGTCAGTTCTATGACTATCGGTGATA 59.853 42.308 5.43 0.00 46.04 2.15
615 617 7.148390 CGTCAGTTCTATGACTATCGGTGATAT 60.148 40.741 5.43 0.00 46.04 1.63
616 618 8.516234 GTCAGTTCTATGACTATCGGTGATATT 58.484 37.037 0.00 0.00 45.03 1.28
617 619 9.734984 TCAGTTCTATGACTATCGGTGATATTA 57.265 33.333 0.00 0.00 0.00 0.98
670 673 2.668550 GTCAACGTGACCCAGGCC 60.669 66.667 0.00 0.00 41.37 5.19
783 795 0.604578 TCACCTACGAAACTTCCCCG 59.395 55.000 0.00 0.00 0.00 5.73
784 796 0.390735 CACCTACGAAACTTCCCCGG 60.391 60.000 0.00 0.00 0.00 5.73
842 879 2.095263 CACGCCACCACATTTCCTTTAG 60.095 50.000 0.00 0.00 0.00 1.85
1704 1747 3.470567 CCGCTCGAGCACGTCAAC 61.471 66.667 34.69 5.29 42.21 3.18
2082 2137 1.853963 ACTGCGTCTACCTCTTGGAT 58.146 50.000 0.00 0.00 37.04 3.41
2220 2275 2.978010 CGCCGTGGCTGGTTCTTT 60.978 61.111 9.55 0.00 39.32 2.52
2234 2289 6.127338 GGCTGGTTCTTTCCAAATTATTAGCT 60.127 38.462 0.00 0.00 37.01 3.32
2258 2316 5.104374 CCAGCATTGTTAAGCCTGTAATTG 58.896 41.667 0.00 0.00 0.00 2.32
2266 2324 5.642063 TGTTAAGCCTGTAATTGACTGCTAC 59.358 40.000 0.00 0.00 36.30 3.58
2284 2342 4.998033 TGCTACCGTTTCAACATTCATACA 59.002 37.500 0.00 0.00 0.00 2.29
2290 2348 6.861055 ACCGTTTCAACATTCATACATCAAAC 59.139 34.615 0.00 0.00 0.00 2.93
2292 2350 7.060979 CCGTTTCAACATTCATACATCAAACTG 59.939 37.037 0.00 0.00 0.00 3.16
2293 2351 7.409661 CGTTTCAACATTCATACATCAAACTGC 60.410 37.037 0.00 0.00 0.00 4.40
2294 2352 5.630061 TCAACATTCATACATCAAACTGCG 58.370 37.500 0.00 0.00 0.00 5.18
2296 2354 6.093909 TCAACATTCATACATCAAACTGCGAT 59.906 34.615 0.00 0.00 0.00 4.58
2385 2449 8.491331 ACATGTTATTGTTAAATCAAATGGGC 57.509 30.769 0.00 0.00 0.00 5.36
2409 2473 1.804601 ACCACTCGATTCCGGTTTTC 58.195 50.000 0.00 0.00 36.24 2.29
2450 2514 3.695060 GACGTATCTTTCTGTCCTCCTCA 59.305 47.826 0.00 0.00 0.00 3.86
2464 2528 2.579201 CTCACGAAGGATGCCCGT 59.421 61.111 0.00 0.00 37.58 5.28
2465 2529 1.519455 CTCACGAAGGATGCCCGTC 60.519 63.158 0.00 0.00 37.55 4.79
2469 2533 4.467084 GAAGGATGCCCGTCGCCA 62.467 66.667 0.00 0.00 37.58 5.69
2470 2534 4.778143 AAGGATGCCCGTCGCCAC 62.778 66.667 0.00 0.00 37.58 5.01
2473 2537 3.053291 GATGCCCGTCGCCACAAA 61.053 61.111 0.00 0.00 36.24 2.83
2474 2538 3.039202 GATGCCCGTCGCCACAAAG 62.039 63.158 0.00 0.00 36.24 2.77
2475 2539 3.842925 ATGCCCGTCGCCACAAAGT 62.843 57.895 0.00 0.00 36.24 2.66
2476 2540 3.284449 GCCCGTCGCCACAAAGTT 61.284 61.111 0.00 0.00 0.00 2.66
2477 2541 2.943653 CCCGTCGCCACAAAGTTC 59.056 61.111 0.00 0.00 0.00 3.01
2478 2542 1.597027 CCCGTCGCCACAAAGTTCT 60.597 57.895 0.00 0.00 0.00 3.01
2479 2543 1.164041 CCCGTCGCCACAAAGTTCTT 61.164 55.000 0.00 0.00 0.00 2.52
2480 2544 0.234884 CCGTCGCCACAAAGTTCTTC 59.765 55.000 0.00 0.00 0.00 2.87
2481 2545 0.234884 CGTCGCCACAAAGTTCTTCC 59.765 55.000 0.00 0.00 0.00 3.46
2482 2546 0.234884 GTCGCCACAAAGTTCTTCCG 59.765 55.000 0.00 0.00 0.00 4.30
2483 2547 0.882927 TCGCCACAAAGTTCTTCCGG 60.883 55.000 0.00 0.00 0.00 5.14
2484 2548 1.285950 GCCACAAAGTTCTTCCGGC 59.714 57.895 0.00 0.00 0.00 6.13
2485 2549 1.574428 CCACAAAGTTCTTCCGGCG 59.426 57.895 0.00 0.00 0.00 6.46
2486 2550 1.574428 CACAAAGTTCTTCCGGCGG 59.426 57.895 22.51 22.51 0.00 6.13
2487 2551 2.258726 ACAAAGTTCTTCCGGCGGC 61.259 57.895 23.83 6.74 0.00 6.53
2488 2552 1.966451 CAAAGTTCTTCCGGCGGCT 60.966 57.895 23.83 9.43 0.00 5.52
2489 2553 1.671379 AAAGTTCTTCCGGCGGCTC 60.671 57.895 23.83 9.17 0.00 4.70
2490 2554 3.607370 AAGTTCTTCCGGCGGCTCC 62.607 63.158 23.83 6.93 0.00 4.70
2516 2580 3.424433 CCGCCGTCATAAAGTTTCTTCAC 60.424 47.826 0.00 0.00 0.00 3.18
2523 2587 7.495934 CCGTCATAAAGTTTCTTCACATCCTAT 59.504 37.037 0.00 0.00 0.00 2.57
2529 2593 8.477419 AAAGTTTCTTCACATCCTATTCCAAA 57.523 30.769 0.00 0.00 0.00 3.28
2532 2596 7.391833 AGTTTCTTCACATCCTATTCCAAAGAC 59.608 37.037 0.00 0.00 0.00 3.01
2533 2597 5.419542 TCTTCACATCCTATTCCAAAGACG 58.580 41.667 0.00 0.00 0.00 4.18
2534 2598 3.531538 TCACATCCTATTCCAAAGACGC 58.468 45.455 0.00 0.00 0.00 5.19
2535 2599 2.614057 CACATCCTATTCCAAAGACGCC 59.386 50.000 0.00 0.00 0.00 5.68
2536 2600 2.238646 ACATCCTATTCCAAAGACGCCA 59.761 45.455 0.00 0.00 0.00 5.69
2537 2601 2.396590 TCCTATTCCAAAGACGCCAC 57.603 50.000 0.00 0.00 0.00 5.01
2556 2620 1.677576 ACGCGATCGGTCTTATGGTTA 59.322 47.619 15.93 0.00 40.69 2.85
2557 2621 2.295349 ACGCGATCGGTCTTATGGTTAT 59.705 45.455 15.93 0.00 40.69 1.89
2581 2645 2.091541 TGAATTTGGAATCCGGTCTGC 58.908 47.619 0.00 0.00 0.00 4.26
2586 2650 0.690192 TGGAATCCGGTCTGCTCAAA 59.310 50.000 0.00 0.00 0.00 2.69
2591 2655 0.468226 TCCGGTCTGCTCAAACAAGT 59.532 50.000 0.00 0.00 0.00 3.16
2601 2668 2.228822 GCTCAAACAAGTATGGTGTGGG 59.771 50.000 0.00 0.00 0.00 4.61
2605 2672 1.382240 CAAGTATGGTGTGGGGGCA 59.618 57.895 0.00 0.00 0.00 5.36
2607 2674 0.709992 AAGTATGGTGTGGGGGCAAT 59.290 50.000 0.00 0.00 0.00 3.56
2608 2675 0.033208 AGTATGGTGTGGGGGCAATG 60.033 55.000 0.00 0.00 0.00 2.82
2609 2676 1.042559 GTATGGTGTGGGGGCAATGG 61.043 60.000 0.00 0.00 0.00 3.16
2632 2699 1.151450 CTGGTGGACCTGTGCCTTT 59.849 57.895 0.00 0.00 36.82 3.11
2646 2713 2.282462 CTTTGGGCTCCACCGCTT 60.282 61.111 0.00 0.00 40.62 4.68
2647 2714 1.903404 CTTTGGGCTCCACCGCTTT 60.903 57.895 0.00 0.00 40.62 3.51
2689 2762 2.180276 GAGCTTGGGAGGTAGTTCAGA 58.820 52.381 0.00 0.00 32.79 3.27
2716 2791 5.368145 GGATGTAGATTGTGGTCTGCATTA 58.632 41.667 8.50 0.00 46.87 1.90
2749 2837 4.202295 GGAAGATGTGGATCATGTGCTAGA 60.202 45.833 0.00 0.00 36.83 2.43
2756 2844 4.877823 GTGGATCATGTGCTAGATTTGTGA 59.122 41.667 0.00 0.00 0.00 3.58
2817 2909 0.994247 TCATGTGAGGGTGCCAGATT 59.006 50.000 0.00 0.00 0.00 2.40
2834 2926 3.379372 CAGATTTGGAGTTCGATGGCATT 59.621 43.478 0.00 0.00 0.00 3.56
2877 2969 3.927854 TGATTCGTTCAACGGTAATGGA 58.072 40.909 10.69 0.00 42.81 3.41
2880 2972 4.671880 TTCGTTCAACGGTAATGGATTG 57.328 40.909 10.69 0.00 42.81 2.67
2964 3067 1.742768 GAGCCTAGTGGTGATCCGG 59.257 63.158 0.00 0.00 36.30 5.14
2965 3068 1.749334 GAGCCTAGTGGTGATCCGGG 61.749 65.000 0.00 0.00 36.30 5.73
2966 3069 2.808206 GCCTAGTGGTGATCCGGGG 61.808 68.421 0.00 0.00 36.30 5.73
2991 3104 3.517296 TTCTTTGGGTGGTTGCTATGA 57.483 42.857 0.00 0.00 0.00 2.15
2999 3112 0.625316 TGGTTGCTATGATGGTGCCT 59.375 50.000 0.00 0.00 0.00 4.75
3001 3114 1.133976 GGTTGCTATGATGGTGCCTCT 60.134 52.381 0.00 0.00 0.00 3.69
3002 3115 2.648059 GTTGCTATGATGGTGCCTCTT 58.352 47.619 0.00 0.00 0.00 2.85
3011 3124 1.377202 GGTGCCTCTTGCGGATGAA 60.377 57.895 0.00 0.00 45.60 2.57
3012 3125 1.648467 GGTGCCTCTTGCGGATGAAC 61.648 60.000 0.00 0.00 45.60 3.18
3015 3128 0.749454 GCCTCTTGCGGATGAACCAT 60.749 55.000 0.00 0.00 38.90 3.55
3093 3207 5.234757 TGATTGATGTTTCTTTGTGCAAAGC 59.765 36.000 17.16 6.76 45.48 3.51
3096 3210 6.088016 TGATGTTTCTTTGTGCAAAGCTAT 57.912 33.333 17.16 9.77 45.48 2.97
3103 3229 4.975502 TCTTTGTGCAAAGCTATTTGTTCG 59.024 37.500 17.16 0.00 46.26 3.95
3121 3247 5.232463 TGTTCGGTTTTATCAGGTCAGTAC 58.768 41.667 0.00 0.00 0.00 2.73
3122 3248 5.221481 TGTTCGGTTTTATCAGGTCAGTACA 60.221 40.000 0.00 0.00 0.00 2.90
3127 3253 5.233689 GGTTTTATCAGGTCAGTACATACGC 59.766 44.000 0.00 0.00 0.00 4.42
3140 3266 5.034554 GTACATACGCGGCTTGTACTATA 57.965 43.478 27.03 5.09 41.45 1.31
3201 3327 4.674281 AAAAACCAACATCGCCCTTAAA 57.326 36.364 0.00 0.00 0.00 1.52
3202 3328 4.674281 AAAACCAACATCGCCCTTAAAA 57.326 36.364 0.00 0.00 0.00 1.52
3203 3329 4.674281 AAACCAACATCGCCCTTAAAAA 57.326 36.364 0.00 0.00 0.00 1.94
3204 3330 4.882842 AACCAACATCGCCCTTAAAAAT 57.117 36.364 0.00 0.00 0.00 1.82
3205 3331 4.450082 ACCAACATCGCCCTTAAAAATC 57.550 40.909 0.00 0.00 0.00 2.17
3206 3332 3.829601 ACCAACATCGCCCTTAAAAATCA 59.170 39.130 0.00 0.00 0.00 2.57
3207 3333 4.466015 ACCAACATCGCCCTTAAAAATCAT 59.534 37.500 0.00 0.00 0.00 2.45
3208 3334 5.043248 CCAACATCGCCCTTAAAAATCATC 58.957 41.667 0.00 0.00 0.00 2.92
3209 3335 4.552166 ACATCGCCCTTAAAAATCATCG 57.448 40.909 0.00 0.00 0.00 3.84
3210 3336 3.315191 ACATCGCCCTTAAAAATCATCGG 59.685 43.478 0.00 0.00 0.00 4.18
3211 3337 3.269538 TCGCCCTTAAAAATCATCGGA 57.730 42.857 0.00 0.00 0.00 4.55
3212 3338 3.611970 TCGCCCTTAAAAATCATCGGAA 58.388 40.909 0.00 0.00 0.00 4.30
3213 3339 4.204012 TCGCCCTTAAAAATCATCGGAAT 58.796 39.130 0.00 0.00 0.00 3.01
3214 3340 4.274950 TCGCCCTTAAAAATCATCGGAATC 59.725 41.667 0.00 0.00 0.00 2.52
3215 3341 4.537015 GCCCTTAAAAATCATCGGAATCG 58.463 43.478 0.00 0.00 37.82 3.34
3230 3356 2.737252 GGAATCGATAAGTCCGAATGCC 59.263 50.000 0.00 0.00 39.62 4.40
3231 3357 3.390135 GAATCGATAAGTCCGAATGCCA 58.610 45.455 0.00 0.00 39.62 4.92
3232 3358 3.685139 ATCGATAAGTCCGAATGCCAT 57.315 42.857 0.00 0.00 39.62 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.170062 TTCGTCTACGCCGCCGAG 62.170 66.667 0.00 0.00 39.60 4.63
34 35 2.126189 AACTTCGTCTACGCCGCC 60.126 61.111 0.00 0.00 39.60 6.13
37 38 0.522915 CGGAGAACTTCGTCTACGCC 60.523 60.000 0.00 0.00 44.58 5.68
58 59 0.324738 TCCTCTCTGGACGGAGCATT 60.325 55.000 3.25 0.00 40.56 3.56
64 65 1.608717 CTGGGTTCCTCTCTGGACGG 61.609 65.000 0.00 0.00 46.14 4.79
67 68 2.191400 CAATCTGGGTTCCTCTCTGGA 58.809 52.381 0.00 0.00 44.51 3.86
73 74 1.210722 GAGGACCAATCTGGGTTCCTC 59.789 57.143 13.65 13.65 43.37 3.71
136 137 1.067846 GTGAAAATCCTTTGTCGGGGC 60.068 52.381 0.00 0.00 0.00 5.80
175 176 2.095978 CTGGTGACTTCCGTCCCGTT 62.096 60.000 0.00 0.00 39.47 4.44
238 239 1.299976 GCTTGGAGGGATCAACCGT 59.700 57.895 0.00 0.00 40.11 4.83
267 268 0.317603 CTTCGACGTCGTCCACAACT 60.318 55.000 34.40 0.00 40.80 3.16
400 401 2.357760 CCGTTTTCCCGCTCCGAA 60.358 61.111 0.00 0.00 0.00 4.30
412 413 4.264638 GCGCTGGTTGCACCGTTT 62.265 61.111 0.00 0.00 42.58 3.60
457 459 3.121019 GACCTGTCGGCGCTCTAT 58.879 61.111 7.64 0.00 0.00 1.98
468 470 3.622826 CGTGGGGGTTCGACCTGT 61.623 66.667 4.41 0.00 38.64 4.00
505 507 2.376109 AGCTTCTACGCCAACTAGCTA 58.624 47.619 0.00 0.00 37.21 3.32
509 511 2.273370 CGAAGCTTCTACGCCAACTA 57.727 50.000 23.50 0.00 0.00 2.24
536 538 1.302511 CCCACAACGACAAGGAGGG 60.303 63.158 0.00 0.00 0.00 4.30
556 558 3.560068 AGTTTGGTGCTAAAACTCTCGTG 59.440 43.478 6.27 0.00 42.75 4.35
562 564 5.983118 GCATGTTTAGTTTGGTGCTAAAACT 59.017 36.000 13.79 13.79 46.72 2.66
563 565 5.751028 TGCATGTTTAGTTTGGTGCTAAAAC 59.249 36.000 0.00 2.47 39.29 2.43
564 566 5.907207 TGCATGTTTAGTTTGGTGCTAAAA 58.093 33.333 0.00 0.00 39.29 1.52
565 567 5.521906 TGCATGTTTAGTTTGGTGCTAAA 57.478 34.783 0.00 0.00 36.44 1.85
566 568 5.285651 GTTGCATGTTTAGTTTGGTGCTAA 58.714 37.500 0.00 0.00 33.95 3.09
567 569 4.555708 CGTTGCATGTTTAGTTTGGTGCTA 60.556 41.667 0.00 0.00 33.95 3.49
568 570 3.716601 GTTGCATGTTTAGTTTGGTGCT 58.283 40.909 0.00 0.00 33.95 4.40
569 571 2.470999 CGTTGCATGTTTAGTTTGGTGC 59.529 45.455 0.00 0.00 0.00 5.01
570 572 3.701241 ACGTTGCATGTTTAGTTTGGTG 58.299 40.909 0.00 0.00 0.00 4.17
571 573 3.378742 TGACGTTGCATGTTTAGTTTGGT 59.621 39.130 0.00 0.00 0.00 3.67
572 574 3.958704 TGACGTTGCATGTTTAGTTTGG 58.041 40.909 0.00 0.00 0.00 3.28
573 575 4.597079 ACTGACGTTGCATGTTTAGTTTG 58.403 39.130 0.00 0.00 0.00 2.93
574 576 4.893424 ACTGACGTTGCATGTTTAGTTT 57.107 36.364 0.00 0.00 0.00 2.66
575 577 4.574828 AGAACTGACGTTGCATGTTTAGTT 59.425 37.500 16.13 16.13 31.81 2.24
576 578 4.127171 AGAACTGACGTTGCATGTTTAGT 58.873 39.130 0.00 0.00 32.39 2.24
577 579 4.732285 AGAACTGACGTTGCATGTTTAG 57.268 40.909 0.00 0.00 32.39 1.85
578 580 5.929415 TCATAGAACTGACGTTGCATGTTTA 59.071 36.000 0.00 0.00 32.39 2.01
579 581 4.754618 TCATAGAACTGACGTTGCATGTTT 59.245 37.500 0.00 0.00 32.39 2.83
580 582 4.152402 GTCATAGAACTGACGTTGCATGTT 59.848 41.667 0.00 0.00 36.50 2.71
581 583 3.679980 GTCATAGAACTGACGTTGCATGT 59.320 43.478 0.00 0.00 36.50 3.21
582 584 4.250570 GTCATAGAACTGACGTTGCATG 57.749 45.455 0.00 0.00 36.50 4.06
590 592 5.752892 TCACCGATAGTCATAGAACTGAC 57.247 43.478 0.00 0.00 44.78 3.51
591 593 8.637196 AATATCACCGATAGTCATAGAACTGA 57.363 34.615 0.00 0.00 0.00 3.41
670 673 4.758251 TGATGCACGTCCAGGCCG 62.758 66.667 0.00 0.00 0.00 6.13
748 760 1.202359 GGTGATGGTGCACGTGTTTTT 60.202 47.619 18.38 0.00 39.66 1.94
783 795 1.022982 GTTTCGGGTCCGGTCAATCC 61.023 60.000 9.68 0.00 40.25 3.01
784 796 1.356527 CGTTTCGGGTCCGGTCAATC 61.357 60.000 9.68 0.00 40.25 2.67
842 879 4.612939 CGACGGAAAGAATTTGGAGGAAAC 60.613 45.833 0.00 0.00 39.27 2.78
918 956 8.934507 TCTTTTCCTTTTTATTTTTCTGCGAA 57.065 26.923 0.00 0.00 0.00 4.70
932 973 1.269051 CGCGTTGCCTCTTTTCCTTTT 60.269 47.619 0.00 0.00 0.00 2.27
2060 2115 3.982876 TCCAAGAGGTAGACGCAGTTGG 61.983 54.545 0.00 0.00 37.15 3.77
2220 2275 5.893255 ACAATGCTGGAGCTAATAATTTGGA 59.107 36.000 0.00 0.00 42.66 3.53
2234 2289 2.584835 ACAGGCTTAACAATGCTGGA 57.415 45.000 0.00 0.00 0.00 3.86
2258 2316 3.496884 TGAATGTTGAAACGGTAGCAGTC 59.503 43.478 0.00 0.00 0.00 3.51
2266 2324 7.060979 CAGTTTGATGTATGAATGTTGAAACGG 59.939 37.037 0.00 0.00 0.00 4.44
2312 2376 4.546570 GTGTTAACAATGCTCAAGGTTCC 58.453 43.478 10.51 0.00 0.00 3.62
2385 2449 1.136305 ACCGGAATCGAGTGGTATGTG 59.864 52.381 9.46 0.00 39.00 3.21
2459 2523 3.249973 GAACTTTGTGGCGACGGGC 62.250 63.158 0.00 0.00 42.51 6.13
2460 2524 1.164041 AAGAACTTTGTGGCGACGGG 61.164 55.000 0.00 0.00 0.00 5.28
2461 2525 0.234884 GAAGAACTTTGTGGCGACGG 59.765 55.000 0.00 0.00 0.00 4.79
2462 2526 0.234884 GGAAGAACTTTGTGGCGACG 59.765 55.000 0.00 0.00 0.00 5.12
2463 2527 0.234884 CGGAAGAACTTTGTGGCGAC 59.765 55.000 0.00 0.00 0.00 5.19
2464 2528 0.882927 CCGGAAGAACTTTGTGGCGA 60.883 55.000 0.00 0.00 0.00 5.54
2465 2529 1.574428 CCGGAAGAACTTTGTGGCG 59.426 57.895 0.00 0.00 0.00 5.69
2466 2530 1.285950 GCCGGAAGAACTTTGTGGC 59.714 57.895 5.05 8.85 0.00 5.01
2467 2531 1.574428 CGCCGGAAGAACTTTGTGG 59.426 57.895 5.05 0.00 0.00 4.17
2468 2532 1.574428 CCGCCGGAAGAACTTTGTG 59.426 57.895 5.05 0.00 0.00 3.33
2469 2533 2.258726 GCCGCCGGAAGAACTTTGT 61.259 57.895 7.68 0.00 0.00 2.83
2470 2534 1.912371 GAGCCGCCGGAAGAACTTTG 61.912 60.000 7.68 0.00 0.00 2.77
2471 2535 1.671379 GAGCCGCCGGAAGAACTTT 60.671 57.895 7.68 0.00 0.00 2.66
2472 2536 2.047179 GAGCCGCCGGAAGAACTT 60.047 61.111 7.68 0.00 0.00 2.66
2473 2537 4.083862 GGAGCCGCCGGAAGAACT 62.084 66.667 7.68 0.00 0.00 3.01
2487 2551 1.682451 TTTATGACGGCGGAGGGGAG 61.682 60.000 13.24 0.00 0.00 4.30
2488 2552 1.682451 CTTTATGACGGCGGAGGGGA 61.682 60.000 13.24 0.00 0.00 4.81
2489 2553 1.227556 CTTTATGACGGCGGAGGGG 60.228 63.158 13.24 0.00 0.00 4.79
2490 2554 0.107848 AACTTTATGACGGCGGAGGG 60.108 55.000 13.24 0.00 0.00 4.30
2491 2555 1.664151 GAAACTTTATGACGGCGGAGG 59.336 52.381 13.24 0.00 0.00 4.30
2492 2556 2.618053 AGAAACTTTATGACGGCGGAG 58.382 47.619 13.24 1.53 0.00 4.63
2493 2557 2.754946 AGAAACTTTATGACGGCGGA 57.245 45.000 13.24 0.00 0.00 5.54
2494 2558 2.739913 TGAAGAAACTTTATGACGGCGG 59.260 45.455 13.24 0.00 0.00 6.13
2495 2559 3.185594 TGTGAAGAAACTTTATGACGGCG 59.814 43.478 4.80 4.80 0.00 6.46
2496 2560 4.742438 TGTGAAGAAACTTTATGACGGC 57.258 40.909 0.00 0.00 0.00 5.68
2497 2561 5.643777 AGGATGTGAAGAAACTTTATGACGG 59.356 40.000 0.00 0.00 0.00 4.79
2498 2562 6.727824 AGGATGTGAAGAAACTTTATGACG 57.272 37.500 0.00 0.00 0.00 4.35
2500 2564 9.396022 GGAATAGGATGTGAAGAAACTTTATGA 57.604 33.333 0.00 0.00 0.00 2.15
2501 2565 9.177608 TGGAATAGGATGTGAAGAAACTTTATG 57.822 33.333 0.00 0.00 0.00 1.90
2516 2580 2.614057 GTGGCGTCTTTGGAATAGGATG 59.386 50.000 0.00 0.00 0.00 3.51
2533 2597 1.299926 ATAAGACCGATCGCGTGGC 60.300 57.895 10.32 0.00 35.23 5.01
2534 2598 0.939577 CCATAAGACCGATCGCGTGG 60.940 60.000 10.32 9.72 35.23 4.94
2535 2599 0.248907 ACCATAAGACCGATCGCGTG 60.249 55.000 10.32 0.00 35.23 5.34
2536 2600 0.458669 AACCATAAGACCGATCGCGT 59.541 50.000 10.32 9.36 35.23 6.01
2537 2601 2.410785 TAACCATAAGACCGATCGCG 57.589 50.000 10.32 0.00 37.24 5.87
2548 2612 8.869109 GGATTCCAAATTCATCCATAACCATAA 58.131 33.333 0.00 0.00 37.10 1.90
2556 2620 3.891366 GACCGGATTCCAAATTCATCCAT 59.109 43.478 9.46 0.00 36.97 3.41
2557 2621 3.053693 AGACCGGATTCCAAATTCATCCA 60.054 43.478 9.46 0.00 36.97 3.41
2581 2645 2.819608 CCCCACACCATACTTGTTTGAG 59.180 50.000 0.00 0.00 0.00 3.02
2586 2650 1.382629 GCCCCCACACCATACTTGT 59.617 57.895 0.00 0.00 0.00 3.16
2591 2655 1.309347 CCATTGCCCCCACACCATA 59.691 57.895 0.00 0.00 0.00 2.74
2601 2668 1.518774 CACCAGAATGCCATTGCCC 59.481 57.895 0.00 0.00 36.33 5.36
2605 2672 0.706433 AGGTCCACCAGAATGCCATT 59.294 50.000 0.00 0.00 38.89 3.16
2607 2674 1.379916 CAGGTCCACCAGAATGCCA 59.620 57.895 0.00 0.00 38.89 4.92
2608 2675 0.962356 CACAGGTCCACCAGAATGCC 60.962 60.000 0.00 0.00 38.89 4.40
2609 2676 1.589716 GCACAGGTCCACCAGAATGC 61.590 60.000 0.00 0.00 38.89 3.56
2611 2678 1.136329 AGGCACAGGTCCACCAGAAT 61.136 55.000 0.00 0.00 38.89 2.40
2632 2699 2.905996 ATCAAAGCGGTGGAGCCCA 61.906 57.895 0.00 0.00 38.01 5.36
2689 2762 2.501723 AGACCACAATCTACATCCGCTT 59.498 45.455 0.00 0.00 0.00 4.68
2749 2837 2.945008 CTGCCATCCACGTATCACAAAT 59.055 45.455 0.00 0.00 0.00 2.32
2756 2844 2.906389 ACCATATCTGCCATCCACGTAT 59.094 45.455 0.00 0.00 0.00 3.06
2817 2909 2.083774 GACAATGCCATCGAACTCCAA 58.916 47.619 0.00 0.00 0.00 3.53
2855 2947 4.316645 TCCATTACCGTTGAACGAATCAA 58.683 39.130 20.47 7.42 46.05 2.57
2877 2969 3.575506 TGGCTCGCCAAAGATCAAT 57.424 47.368 8.43 0.00 44.12 2.57
2947 3042 1.762460 CCCGGATCACCACTAGGCT 60.762 63.158 0.73 0.00 39.06 4.58
2950 3045 0.909623 AAACCCCGGATCACCACTAG 59.090 55.000 0.73 0.00 35.59 2.57
2974 3087 2.225242 ACCATCATAGCAACCACCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
2977 3090 1.392589 CACCATCATAGCAACCACCC 58.607 55.000 0.00 0.00 0.00 4.61
2991 3104 1.452651 CATCCGCAAGAGGCACCAT 60.453 57.895 0.00 0.00 45.17 3.55
2999 3112 0.322366 TGCATGGTTCATCCGCAAGA 60.322 50.000 0.00 0.00 43.02 3.02
3001 3114 1.135053 CAATGCATGGTTCATCCGCAA 60.135 47.619 0.00 0.00 36.46 4.85
3002 3115 0.456628 CAATGCATGGTTCATCCGCA 59.543 50.000 0.00 0.00 39.52 5.69
3015 3128 4.404073 ACCTTTGAACTTTACACCAATGCA 59.596 37.500 0.00 0.00 0.00 3.96
3026 3139 4.948004 AGACCGAAGAAACCTTTGAACTTT 59.052 37.500 0.00 0.00 0.00 2.66
3064 3177 7.211573 TGCACAAAGAAACATCAATCAAGAAT 58.788 30.769 0.00 0.00 0.00 2.40
3093 3207 7.119262 ACTGACCTGATAAAACCGAACAAATAG 59.881 37.037 0.00 0.00 0.00 1.73
3096 3210 5.127491 ACTGACCTGATAAAACCGAACAAA 58.873 37.500 0.00 0.00 0.00 2.83
3103 3229 5.233689 GCGTATGTACTGACCTGATAAAACC 59.766 44.000 0.00 0.00 0.00 3.27
3121 3247 5.862323 AGAAATATAGTACAAGCCGCGTATG 59.138 40.000 4.92 3.17 0.00 2.39
3122 3248 6.022163 AGAAATATAGTACAAGCCGCGTAT 57.978 37.500 4.92 0.00 0.00 3.06
3185 3311 4.448537 TGATTTTTAAGGGCGATGTTGG 57.551 40.909 0.00 0.00 0.00 3.77
3187 3313 4.202010 CCGATGATTTTTAAGGGCGATGTT 60.202 41.667 0.00 0.00 0.00 2.71
3188 3314 3.315191 CCGATGATTTTTAAGGGCGATGT 59.685 43.478 0.00 0.00 0.00 3.06
3189 3315 3.563808 TCCGATGATTTTTAAGGGCGATG 59.436 43.478 0.00 0.00 0.00 3.84
3190 3316 3.815809 TCCGATGATTTTTAAGGGCGAT 58.184 40.909 0.00 0.00 0.00 4.58
3191 3317 3.269538 TCCGATGATTTTTAAGGGCGA 57.730 42.857 0.00 0.00 0.00 5.54
3192 3318 4.537015 GATTCCGATGATTTTTAAGGGCG 58.463 43.478 0.00 0.00 0.00 6.13
3193 3319 4.274950 TCGATTCCGATGATTTTTAAGGGC 59.725 41.667 0.00 0.00 40.30 5.19
3209 3335 2.737252 GGCATTCGGACTTATCGATTCC 59.263 50.000 1.71 3.59 36.49 3.01
3210 3336 3.390135 TGGCATTCGGACTTATCGATTC 58.610 45.455 1.71 0.00 36.49 2.52
3211 3337 3.469008 TGGCATTCGGACTTATCGATT 57.531 42.857 1.71 0.00 36.49 3.34
3212 3338 3.685139 ATGGCATTCGGACTTATCGAT 57.315 42.857 2.16 2.16 36.49 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.