>input_sequence_56817
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--ATGGGCTCTCCTCCTCGGCGGCGCAGCTGTTCCTCCATGGCGTGCGGCGGTACCCGCATGGAGTGGTCCGAGCTGCCC
GCTGACCTCGTGCTCGCCATCTTCGCGCTGCTCCCCTCCGACGCCGACCGCGTCCGCTTCCGCGCCGTCTGCCAGAGGTG
GGCCGCCGTGGCGGCGTTTTGGCGCCCGCGGCCGTGGCTCGTCGGCTCCCGCACCGACCGCTCCGGCCAGGGCGCCGCCA
TGTCGTCCTTCTGGCTCTCCCAGGCCGGCCGCCTCGTGCCCTTCGCCGCCGCCGTGCCTCCCGGCCTGGAGTACCTCTCC
TCCTCCCACGGCTACCTCGTGCTCTCCGACCCCACGGCCGTCCCCAAGGCGATTACGCTGGTCAACCCCGTCACCGGCCG
GCGCATCCCGCTCCCTCCCATCGCCTTCTTCAAGAAGTGGCACGACGTCGCCACCGTCGTGCTGTCGGCCGATCCGGGCG
GGGCCACCGAGTGGGCCGCGGTGGCCGCCGGCTTCCCGGCCGACCGCATCGCGTACTACAGCTCCGCCACGGGAGCCTGG
ACGCCCCTGGCTTTCAGCGCCGCCGGGTACGCCGGGGTCGAGCACTACAGGGGGCGGTTCTACGTGGCCTTCAAGAATCA
GCTCTGCGTCATCTGCGAGCTTGAGTGCGGCGCGCCCCCTGCCGTCATCCCGCTCGAGCACGTCAACGGCGACGGCGGCG
GCGGTGGATCCGACGACGACGAGCTGGTCCCAGGAAGCGGCAGGTCCGTCGCCCTCGACGCGCACCTGGTGGAGTGCAAC
GGCCAGCTGCTGCTCGTGTCGGTGCGCGACGAGACGGACTACAACTCGGACAACGACATTGGCG------------CGGG
CGACGCCGACGCCGACGACGAGGGCAGCACCGCCGGCGGCGGCAGCACGCGCGTGGTCGAGGTGCACAGGGTGGAATTAG
TCGGGGACGGCGCCGTGCGGCTGGTGCGGGTGGAGGACCTCGGTTGGCACGCGCTGTTCCTTGGCCGGAACCAAGCGTTC
GCGCTCTCGCCGGCAGACTTCCCGGCGTGCCGCGCCAACTGCGTCTACCTCTTGGATAGGCAGGGCCACCCTGACGGGGT
CGTCAGGGTGGTGAACATGGAGAGCCAGTGGGCGCGCCTCGAGGAGACGATCTACCCCGACGACGGCCGGCGAGGTTTGC
CCTCGGTCGGCTGGGCTCGCCGTGGCTGGTTCTTTCCAAATTATTAG---------------------------------
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>chr1B_1_TraesCS1B01G198100
GCGCCCCCCTCTTCTTACAGCATTGGACAAGCTCGGCGGCGTAGACGAAGTTCTCCGAAATGCTCCGTCCAGAGAGGAAC
CCAGATTGGTCCTCATCGATCAGGAGCCCGATCTGCCGCTGAAGCCGAGTGGTGAGGCCCCGACAAAGGATTTTCACGTC
ACCGTTCTGGAGAGAAACGGGACGGAAGTCACCAGGGCCCGGGACCCCCTCCTTCTTGGGGAGGAGAGCGATGAGGGCAC
GGTTGATCCCTCCAAGCCGCGCAGTGCAGTTGTGGACGACGTCGAAGAGGGCGATCAGGTCGTCGGCGACCACGGCCCAG
GCGGCCTGGTAGAAGGCCGGGCCAAGCCCATCCGGCCCCGGCGCGCTGGTCCTGTCGAGAGCGAAGACCGCTTCCCGGAC
TTCGGAGCGGGAAAACGGTGCAACCAGCGCAGCACCGTCGACCCCCCTGGCG-CCCGCATAGAGCGCCGACAGGTCGAAC
CCCCACGACGTGCGGGGGACCCGGCCTAGCTAGTTGGCGTAGAAGCTTCGCAGGGCGCCCTCCTTGTCGTTGTGGGACAC
GAGAGTTTTAGCACCAAACTAAACATGCAACGTCAGTTCTATGACTATCGGTGATATTATCTCAAAAAAACTCACGCGCA
CGTCGCAACGCAACGTCAACGTGACCCAGG-CCGGCCTGGACGTGCATCACCA--------CAACCCCATCGGC-ATATA
GAAACTCGAAAAAGCCGTGGGGACGGCTAGGCCATCGGAAAAAACACGTGCACCATCACCTACGAAACTTCCCCGG----
-------------------ATTGACCGGACCCGAAACGCATCCATCCATGCGTTCCACGCCACCACATTTCC--TTTAGT
TTCCTCCAAATTCTTTCCGTCGAAATGAAGGCACCGCAAAATCCCCGTCGGAGGGAGCCAAAGC-GGCGACGCGATTCGC
AGAAAAATA---AAAAGGAAAAGAGGCAACGCGCCGGATATTCTCCGTATTT--TTTATCAAGGGTCACACACACATAGT
ACATGGGCTCTCCTCCTCGGCGGCGCAGCTGTTCCTCCATGGCGTGCGGCGGTACCCGCATGGAGTGGTCCGAGCTGCCC
GCTGACCTCGTGCTCGCCATCTTCGCGCTGCTCCCCTCCGACGCCGACCGCGTCCGCTTCCGCGCCGTCTGCCAGAGGTG
GGCCGCCGTGGCGGCGTTTTGGCGCCCGCGGCCGTGGCTCGTCGGCTCCCGCACCGACCGCTCCGGCCAGGGCGCCGCCA
TGTCGTCCTTCTGGCTCTCCCAGGCCGGCCGCCTCGTGCCCTTCGCCGCCGCCGTGCCTCCCGGCCTGGAGTACCTCTCC
TCCTCCCACGGCTACCTCGTGCTCTCCGACCCCACGGCCGTCCCCAAGGCGATTACGCTGGTCAACCCCGTCACCGGCCG
GCGCATCCCGCTCCCTCCCATCGCCTTCTTCAAGAAGTGGCACGACGTCGCCACCGTCGTGCTGTCGGCCGATCCGGGCG
GGGCCACCGAGTGGGCCGCGGTGGCCGCCGGCTTCCCGGCCGACCGCATCGCGTACTACAGCTCCGCCACGGGAGCCTGG
ACGCCCCTGGCTTTCAGCGCCGCCGGGTACGCCGGGGTCGAGCACTACAGGGGGCGGTTCTACGTGGCCTTCAAGAATCA
GCTCTGCGTCATCTGCGAGCTTGAGTGCGGCGCGCCCCCTGCCGTCATCCCGCTCGAGCACGTCAACGGCGACGGCGGCG
GCGGTGGATCCGACGACGACGAGCTGGTCCCAGGAAGCGGCAGGTCCGTCGCCCTCGACGCGCACCTGGTGGAGTGCAAC
GGCCAGCTGCTGCTCGTGTCGGTGCGCGACGAGACGGACTACAACTCGGACAACGACATTGGCG------------CGGG
CGACGCCGACGCCGACGACGAGGGCAGCACCGCCGGCGGCGGCAGCACGCGCGTGGTCGAGGTGCACAGGGTGGAATTAG
TCGGGGACGGCGCCGTGCGGCTGGTGCGGGTGGAGGACCTCGGTTGGCACGCGCTGTTCCTTGGCCGGAACCAAGCGTTC
GCGCTCTCGCCGGCAGACTTCCCGGCGTGCCGCGCCAACTGCGTCTACCTCTTGGATAGGCAGGGCCACCCTGACGGGGT
CGTCAGGGTGGTGAACATGGAGAGCCAGTGGGCGCGCCTCGAGGAGACGATCTACCCCGACGACGGCCGGCGAGGTTTGC
CCTCGGTCGGCTGGGCTCGCCGTGGCTGGTTCTTTCCAAATTATTAGCTCCAGCATTGTTAAGCCTG---TAATTGACTG
CTACCGTTTCAACATTCATACATCAAACTGCGAT------TTTTTGTGAGGGTTAGGAACCTTGAGCATTGTTAACACCG
TTAATTTCTTTGACATCACTCAGACATGTTATTGTTAAATCAAATGGGCACATACCACTCGATTCCGGTTTTCAGATGTA
TTTTTCTTTTAGACGTATCTTTCTGTCCTCCTCACGAAGGATGCCCGTCGCCACAAAGTTCTTCCGGCGGCTCCCCTCCG
CCGTCATAAAGTTTCTTCACATCCTATTCCAAAGACGCCACGCGATCGGTCTTATGGTTATGGATGAATTTGGAATCCGG
TCTGCTCAAACAAGTATGGTGT---GGGGGCAATGGCATTCTGGTGGACCTGTGCCTTTGGGCTCCACCGCTTTGATGGC
GTTT------GCGCCGGCGTAGAGCTTGGGAGGTAGTTCAGAAGCGGATGTAGAT-T-GTGGTCTGCATTAGCG------
ACATCTGGAAGATG-TGGAT------CATGTGCTAGATTTGTGATACGTGGAT----GGCAGATATGGTTTCCTCCTCTA
ACGTCTTAGTCATGTGAGGGTGCCAGATTTGGAGTTCGATGGCATTGTCTGGGGTGTTGCCCCGGTTTGATTCGTTCAAC
GGTAATGGATTGATCT---TTGGCGAGCCACCTTGAAGGTCCGCAAAACTGCATATCAGCGATGAAGCCGCGTCGAGCTC
GAGCCTA--------GTGGTGATCCGGGG------TT--TTTTC--TTTGGGTGGTTGCTATGATGGTGCCTCTTGCGGA
TGAACCATGCATTGGTGTAAAGTTCAAAGGTTTCTTCGGTCTTGTTTGTAATTTTAATTCTTG-ATTGATGTTTCTTTGT
GCAAAGCTATTTG-----------TT-CGGTTTTATCAGGTCAGTACATACGCGGCTTGTACTATATTTCTTATGATATA
AATGAGACATGTATTATCATGCCAAAAAAACCAACATCGCCCTTAAAAATCATCGGAATCGATAAGTCCGAATGCCAT
>chr3D_1
GCGCCCCCCTCTTCTTACAGCATTGGACAAGTTCCGCCGCATAGACGAAGTTCTCCGAGATGCTTCGCCCAGACAGGAAC
CCAGATTGATCCACATCGACCAGGAGACCGATCTGCCGTTGAAGCCGAGTGGTGAGCCCCCGACAGAGGATCTTCACGTC
ACCGTTCTGGAGAGAGACGGGACGGAAGTCGCCGGGGCCCGGAGTCCCCTCCTT---AGGGAGGAGAGCGATGAGGGCGC
GGTTGATCCCGCCGAGTCGCGCAGTGCCGTTGTGGACGGCGTCGAAGAAGGCGAGCAGGTCGTCGGCGACCACGCTCCAG
GCGGCCTGGTAGAAGGCCGGGCCGAGCCCGTCCGGCCCCGGTGCGCTGGTCCTGTCGAGAGCGAAGACAGCCTCCCGGAT
CTCGGAGCGGGAGAACGGCGCAACCAGCGGAGCACCATCGACCACCGGGGCG-CCCGCGTAGAGCGCCGGCAGGTCAAAC
CCCCACGACGTGTGGGGGACCCGGCCCAGCAAGTTGGCGTAGAAGCGTCTCAGGGCGGCCTCCTTGTCGTTGTGGGAGAC
GAG-----------------------------------------------------------------------------
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>chr3D_1
GCGCCCCCCTCTTCTTACAGCATTGGACAAGTTCCGCCGCATAGACGAAGTTCTCTGAGATGCTTCGCCCAGACAGGAAC
CCAGATTGATCCACATCGATCAGGAGACCGATCTGCCGTTGAAGCCGAGTGGTGAGCCCCCGACAGAGGATCTTCACGTC
ACCGTTCTGGAGAGAGACGGGACGGAAGTCACCGGGGCCCGGAGTCCCCTCCTTCTTAGGGAGGAGAGCGATGAGGGCGC
GGTTGATCCCGCCGAGTCGCGCAGTGCCGTTGTGGACGGCGTCGAAGAAGGCGAGCAGGTCGTCGACGACCACGCTCTAG
GGGGCCTGGTAGAAGGCCGGGCCGAGCCCGTCCGGCCTCGGCGCGCTGGTCCTGTCGAGAGCGAAGACAGCCTCCCGGAC
CTCGGAGCGGGAGAACGGCGCAACCAGCGGAGCACCATCGACCACCGGGGCGCCCCGCGTAGAGCGTCGGCAGGTCGAAC
CCCCACGACGTGTGGGGGACCCGGCCCAGCAAGTTGGCGTAGAGGCGTCTCAGGGCGGCCTCCTT-TCGTTGTGGGAGAC
GAG-----------------------------------------------------------------------------
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>chr7B_1
GCGCCCCCCTCTTCTTGCAACATTGGATAAGTTCCGCCGCGTAGACGAAATTCTCCGAGATACTTCTCCCAGGCAGGAAC
CCGGATTGGTCATCGTCGATCAAGAGCCCAATCTGCCGCTGAAGCCGAGTGGTGAGCCCCCGACACAGGATCTTCACATC
ACCGTTCTAAAGAGAGACGGGACGGAAGTCGCCGGGCCCCGGGGTCCCCTCCTTTTTGGGAAGGAGGGCGATGAGGGCGC
GGTTGATCCCGCCGAGATTAGCAGTGCCGTTGTGGACGGCGTCGAAAAGGGCGAGCAGGTCGTCCGCGACCACGCTCCAG
GTGGCCTGGTAGAAGGCCGGGCCGAGCCCATCCGGCCCCGGCGCGCTGGTCCTGTCGAGAGCGAAGACAGCCTCCCGGAC
CTCGGAGCGAGAGAACGGCTCAACCAGCGGAGCCCCATCGACCATCGGAGCGCCA-GTGTAAAGCGCCGCCAGATCGAAC
CCCCACGATGCGCGGGGAGCCCGGCCCAGCAGGTTGGCGTAGAAGCGTCTCAGGGCGGCCTCCTTGTCGTTGTGGGAGAC
GAG-----------------------------------------------------------------------------
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>chr6B_1
GCGCCCCCCTCTTCTTGCAACATTGGATAAGTTCCGCTGCGTAGACGAAATTCTCCGAGATACTTCTCCCAGGCAGGAAC
CCGGATTGGTCATCGTCGATCAAGAGCCCAATCTGCCGCTGAAGCCGAGTGGTGAGCCCCCGACACAGGATCTTCACATC
ACCGTTCTGAAGAGAGACGGGACGGAAGTCGCCGGGCCCCGGGGTCCCCTCCTTTTTGGGAAGGAGGGCGATGAGGGCGC
GGTTGATCCAGCCGAGATTAGCAGTGCCGTTGTGGACGACGTCGAAGAGGGCGAGCGGGTCATCCGCGACCACGCTCCAG
GCGGCCTGGTAGAAGGCCGGGCCGAGCCCATCCGGCCCCGGCGCGCTGGTCCTGTCGAGAGCGAAGACAGCCTCCCGGAC
CTCGGAGTGAGAGAACGG-TCAACCAGCGGAGCCCCATCGACCATCGGAGCGCCA-GTGTAAAGCGCCGCCAGATCGAAC
CCCCATGATGCGCGGGGAGCCCGGCCCAGCAGGTTGGCGTAGAAGCGTCTCAGGGCGGCCTCCTTGTCGTTGTGGGAGAC
GAG-----------------------------------------------------------------------------
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>chr1A_628
AACTCA--------------------------------------------------------------------------
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----------------------------------------------------------------------------CGCA
CGTCGCAACGCAACGTCAACGTGACCCAGTCCGGGCCTGGACGTGCATCACCAGTTCACCACAACCCCATCGCATATATA
GAAACTAGAAAAAGCCGTGGGGACGGCTTGGCCATCGGAGAAACCACGTGCACCATCACCCACGAAACTTCCCCATCCGT
GTTCAGTGGCACATCACACATTGACCGGACCCGAAACGCATCCTTCCATGCGTTCCACGCCACCACATTTCCGCTTTAAT
TTCCTCCAAATTCTTTCCGTCGAAAAGAAGGCACCGCAAAATCCCCGTCGGAGGGAGCCAAAGC-GGCGACGCGACTCGC
AGAAAAATACTATAAAGGAAAAGAGGCAACGCGCCGGATATTCTCCGTATTT--TTTATCAAGGGTCACACACACATAGT
ACATGGGCTCTCCTCCTCGGCGGCGCAGCTGTTCCTCCATGGCGTGCGGCGGTACCCGCATGGAGTGGTCCGAGCTGCCC
GCTGACCTCGTGCTCGCCGTCTTCGCGCTGCTCCCCTCCGACGCCGACCGCGTCCGCTTCCGCGCCGTCTGCCAGAGGTG
GGCCGCCGTGGCGGCGTTCTGGCGCCCGCGGCCGTGGCTCGTCGGCTCCCGCACCGACCGCTCCGGCCAGGGCGCCGCCA
TGTCGTCCTTCTGGCTCTCCCAGGCCGGCCGCCTCGTGCCCTTCGCTGCCGCCGTGCCCCCCGGCCTGGAGTACCTCTCC
TCCTCCCACGGCTACCTCGTGCTCTCCGACCCCACGGCCGTCCCCAAGGCGATTACGCTGGTCAACCCCGTCACCGGCCG
GCGCATCCCGCTCCCTCCCATCGCCTTCTTCAAGAGGTGGCACGACGTGGCCACCGTCGTGCTGTCGGCCGATCCGGGCG
GGGCCACCGAGTGGGCCGCGGTGGCCGCCGGCTTCCCGGCCGACCGCATCGCGTACTACAGCTCCGCCACGGGAGCCTGG
ACGCCCCTGGCTTTCAGCGCCGCCGGGTACGCCGGGGTCGAGCACTACAGGGGGCGGTTCTACGTGGCCTTCAAGAATCA
GCTCTGCGTCATCTGCGAGCTTGAGTGCGGCGCGCCCCCTGCCGTCATCCCGCTCGAGCACGTCGAGGGCGACGGCGGCG
GCGGTGGATCCGACGACGACGAGCTGGTCCCAGGAAGCGGCAGGTCCGTCGCCCTCGACTCGCACCTGGTGGAGTGCGAC
GGCCAGCTGCTGCTCGTGTCGGTGCGCGACGAGACGGACTACAACTCGGACAACGACATTGGCG------------CGGG
CGACGCCGACGCCGACGACGAGGGCAGCAGCGCCGGCGGCGGCAGCACGCGCGTGGTCGAGGTGCACAGGGTGGAATTAG
TCGGGGACGGTGCTGTGCGGCTGGTGCGGGTGGAGGACCTCGGCTGGCACGCTCTGTTCCTTGGCCGGAACCAAGCGTTC
GCGCTCTCGACGGCAGACTTCCCGGCGTGCCGCGTCAACTGCGTCTACCTCTTGGACAGGCAGGGCCACCCTGACGGGGT
CGTCAGGGTGGTGAACATGGAGAGCCAGTGGGCGCGCCTCGAGGAGACCATCTACCCCGACGACGGCCGGCGAGGTTTGC
CCTCGGTCGGCTGGGCTCGCCGTGGCTGGTTCTTCCCGAATAA---------------TTAAGCCTG---TAATTAACTG
CTATCGTTTCAACATTCATACTTCAAA-------CTACGATTTTTGTGAGGGTTATGAACCTTGAGCATTGTTAACACCG
TTAATTTATTTGACATCACTCACACATGTTATTGTTAAATCAAATGGGTACATACCATTCGGTTCCGGTTTTTAGATGTA
TTTTTCTTTTAGACGTATCGTTCT-TCCTCCTCTCGAAGGA---------------------------------------
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>chr1D_628
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--------------------------------------------------------------------AACTCACGCGCA
CGTCGCAGCGCAACGTCAA--TGACCCAGG-CGGGCCTGGACGTGCATCACCA--------CAACCCCATC-GC-ATATA
GAAACTCGGAAAAGCCGTGGGGGCGGCTAGGCCATCGGAGAAAACACGTGCACCATCACCTACGAAACTTCCC-------
----------------CACATTGACCGGACCCGAAACGCATCCATCCATGCGTTCCACGCCACCACATTTC--CTTTAAT
TTCCTCCAAATTCTTTCCGTCGAAATGCCGCTTTGGCTCCCTCCGACGGGGATTTTGCGGTGCCTGGCAACGCGACTCGC
AGAAAAATA---TAAAGGAAAAGAGGCAACGCGCCGGATATTCTCCGTATTTTTTTTATCAAGGGTCACACACACATAGT
ACATGGGCTCTCCTCCTCGGCGGCGCAGCTGTTCCTCCATGGCGTGCGGCGGTACCCGCATGGAGTGGTCCGAGCTGCCC
GCTGACCTCGTGCTCGCCATCTTCGCGCTGCTCCCCTCCGACGCCGACCGCGTCCGCTTCCGGGCCGTCTGCCAGAGGTG
GGCCGCCGTGGCGGCGTTCTGGCGCCCGCGGCCGTGGCTCGTCGGCTCCCGCACCGACCGCTCCGGCCAGGGCGCCGCCA
TGTCGTCCTTCTGGCTCTCCCAGGCCGGCCACCTCGTGCCGTTCGCCGCCGCCGTGCCTCCCGGGCTGGAGTACCTCTCC
TCTTCCCACGGCTACCTCGTGCTCTCCGACCCCTCGGCCGTCCCCAAGGCGATTACGCTGGTCAACCCCGTCACCGGCCG
GCGCATCCCGCTCCCTCCCATCGCCTTCTTCAAGAAGTGGCACGACGTCGCCACCGTCGTGCTGTCGGCCGATCCGGGCG
GGGCCACCGAGTGGGCCGCGGTGGCCGCCGGCTTCCCGGCCGACCGCATCGCGTACTACAGCTCCGTCACGGGAGCCTGG
ACGCCCCTGGCTTTCAGCGCCGCCGGGTACGCCGGGGTCGAGCACTATAGGGGGCGGTTCTACGTGGCCTTCAAGAATCA
GCTCTGCGTCATCTGCGAGCTTGAGTGTGGCGCGCCCCCTGCCGTCATCCCGCTCGAGCACGTCGAGGGCGACGGCGGCG
GCGGTGGATCCGACGACGACGAGCTGGTCCCAGGAAGCGGCAGGTCTGTTGCCCTCGACGCGCACCTCGTGGAGTGCGAC
GGCCAGCTGCTGCTCGTGTCGGTGCGTGACGAGACGGACTACAACTCGGACAACGACATTGGCGTGGGGGCGGGGGCGGG
CGACGCCGACGTCGACGACGAGGGCAGCACCGGCGGCGGCGGCAGCACGCGCGTGGTCGAGGTGCACAGGGTGGAATTAG
TCGGGGACGGTGCTGTGCGGCTGGTGCGGGTGGAGGACCTCGGCTGGCACGCGCTGTTCCTTGGCCGGAACCAAGCGTTC
GCGCTCTCGCCGTCAGACTTCCCGGCGTGCCGCGTCAACTGCGTCTACCTCTTGGACAGGCAGGGCCACCCTGACGGGGT
CGTCAGGGTGGTGAACATGGAGAGCCAGTGGGCGCGCCTCGAGGAGACCATCTACCCCGACGACGGCCGGCGAGGTTTGC
CCTCGGTCGGCTGGGCTCGCCGTGGCTGGTTCTTCCCAAATTATTAGCGCCAGCATTGTTAAGCCTGTACTAATTAACTG
CTATCGTTTCAACATTCATACTTCAAAGTTTAAACTACAATTTTTGCGAGGGTTATCAACCTTGAGCATTGTTAACACCG
TTAATTTCTTTGACATCACTCAGACATGTTATTGTTAAATCAAATGGGTACAGACCACTCGATTCCGGTTTTTCGACGTA
TTTTTCCTTTAGACGTAT--------------------------------------------------------------
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>chr3D_2496
CGCCGA--------------------------------------------------------------------------
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-----ATAACGTTTCTTCAGATTCTACTTCAACGAG-----GTGATTGGTCCTATGGTTGGGGGCGGATCTGGAATTCAG
TCTGTTCAAGTAAGGATGGTGCAGCGGCGGCGGCATCCTTGTGGTGGACCTGTGTCCTCGGGCTCCGCCGTTGCGACGGC
GTCTGCTCCAGCGCCGGCGCGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT-T-GTGGTCTGCATCGACG------
TCATCTGAAAGATGGTGGAT------CGTGTGCTGGGTTCGTGGTACGTGGAT----GACATGTATGGTTTCCTCCTCCG
ACGTCTTAGTCATGTGGGTGTGCCAGATCTGGAGTTCGATGGCGT-GTTCGGGGAGTTGCCCCGGTCTGATTCGTTCAAC
GGTAATGGTTTCGTCT---TTGGCGAGCCACTTTCGAGGTCCGTAAAGCTGCATATCAGTGATGGAGGCGCATCGAGCTC
GGGTGTG--------AAGGTGATCCGTTA--T---TT---TGTT--CTTTGGTGGCTGCTGTGGTGGTGCCAAAGGCAGG
TGA--CGGACGTTGGTATTAAGCTCAGAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTG-GCTGATGTTCCTTTTT
GCAAAGGTTAGCTTTCTGCTATTTGTTCAGCTTTGCCAAGTCGGTGTGTACGTGACTTGTACTATGATTCTT---ATATA
AATGAGACACGTATTACCATGAAAAAAAAA------------------------------------------------
>chr1D_2503
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-----ATAAAGTTTCTTCAGATCCTACTCCGACAAG-----CTGATTGGTCCTATTGTTGGGGATGGATTTGGAAATCAG
TCTATTCAAGTAAGGATGGCGT---GGTGGTGGCATCCTCGTGCTGGACCGGTGTCCTCAGGCTCCGCCGTTGCAACGGC
CTTTGCTCCAGCGCCGGCGCGGAGCTTGGGAGATAGTCCAGGAGCGGACGCAGAT-T-ATGGTCGGCATCGGCG------
GCATCTGGAAGATGGTGGAT------C------CGGGTTCGTGGTTTGTGGAT----GGCAGGTATGGTTTTCTCCTCCG
AAGTCTTAGTCGTGTAGGGATGCCAGATCTGGAGTTCGATGGCGT-GTCTGGGGTGTTGCCCTGGTCTTACTCGTTCAAC
GGTAATGGTTTCACCT---TTGGCGAGCCACCTTAGAGGTTCGCAAAGCTGCATACCAGTGATGGAGCCGCGTCGAGCTC
GTGTGTG--------GAGGTGATCCGTTA--T---TT---TTTC--CTTTGGTGGTTGCTGCGGTGGTGCCAGAGGTAGG
TGA--CGAGCGTTGCTGTCAAGCTCAGAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTG-GCTGA--TTCCTTTGT
GCAATGGCTAGCGTTCTGCTATTTGTTCAGATTTGCCATGTCGGGATGTACGTGACTTGTACTATGATCTTTATGATATA
AATGCGACACATATTACCATGCAAAAAAAA------------------------------------------------
>chr7B_2503
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-----ATAAAGTTTCTTCAGATCCTACTCCGACGAG-----GCAATCAGTCGTATGATTGGGGATGGATTTGGAAATCAG
TCTGTTCAAGCAAGGATGGCGTGGCGGCGGCGACATCCTCGTGGTGGACTTGTGCCCTCGGGCTCCACCGTTGCGACGGC
GTTTGCTCCAGCGCCGGCGCGGAGCTTGGGAGGTAGTCCAGGAGCGGCTGCAGAT-TTGTGGTCTGCATCGGCG------
GCATCTGGAAGATGGTGGAT------CGTGTGATGGGTTCGTGGTTCGTGGAT----GGCAGGTGTGGTTTTCTCCTCCG
GCGTCTTAGTCGTGTGGGGGTGCCAGATCTAGAGTTCGATGGCGT-GTCCGGGGTGTTGCCCCGGTCTGATTCGTTCAAC
GGTAATGGTTTCGCTT---TTGGTGAGCCACCTTGGAGGTCCGCAAAACTGCATATCAGCGATGGAGCCGCTTCGAGCTC
GGGTGTG--------AAGGTGATTCGTCA--T---TT--TTTTC--CTTTGGTGGCTGCTATGGTGGTTCCAAAGGCAGG
TGA--CGGGCGTTGGTGTCAAGTTCAAAGGTTTCTTCGGTCTTGATTGTAATTTTACTTCTTG-GCTGTTGTTCCTTTGT
GCAAAGGCTAGCGATTTGCTGTCTTTTCAATTTTGTCAGATAGGTTTGTGCGTGTCTTGTACTATGATCCTTATGATATA
A-TGAGACACGTATTTCCATGCAAAAAAAA------------------------------------------------
>chr4D_2503
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-----ATAAAGTTTCTTCAGATTCTACTCCAATGAG-----GAGATCGGTCCTATGGTT-GGGGCGGATATGGAATCCAG
TCTGTTCAAGTAAGGATGATA---CAGCGGCGGCATCCTCGTGGTGGACCTGTGTCCTCGGGCTCCACCGTTGCGACGAC
GTCTGCTCCAGCGCTGGATTGGAGCTCGGGAGGTAGTCCAAGAGCGGATGCAGAT-T-ATGGTCTGCATGGACG------
ACATCTGAAAGATGGTGGAT------CGTGTGCTGGGTTCGTGGTACGTGGAT----GACAGGCATGGTTTCCTCCTCCG
ACGTCTTAGTCATGTGGGGGTGCCAGATCTGGAGTTCGATGGCAT-GTCCGGGTA-TTGCCTCAGTCTGATTCGTTCCAC
GGGAATGGTTTCGTCT---TTGGCGAGCCACCTTCGATGTCCGCAAAGCTGGATATCAGCGATGGAGCCGCATCGAGCTC
GGGTGTG--------GAGGTGATCCGTTA--T---TT---TGTT--CTTTGGCTACTGATGTGGTGGTGCCAGAGGCAGG
CGA--TGGACGTTGGTGTCAAGCTCAGAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTA-ACTGATGTTCCTTTGT
GCAAAGGCTA----------------------------------------------------------------------
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>chr6D_2503
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-----ATAAAGTCTCTTCAGATCCTACTCCGACGAG-----GCGATCGGTCCA-----TGAGGATGAATTTGAAATCCAG
TCTGTTCAAGTAAGGATGATGCGGCAGCGGTGGCATCCTCCTGCTGGACATGTGTCTTCGGGATCCGTCGTTGCAACAGT
GTTTGCTCCAACGTCGT-GCGGAGCTAGGGAGGTAGTCTAGTAGCATATGCAGAT-T-GTGGTCTGCATCGGCGTCATCT
GCATCTGGAAGATGGTGAAT------CGTATGCTGGGTTCGTGGTACGTGGAT----GGCAGGTATGGTTTCC-CCTCTG
ACGTCTTAGTAATATGGGGGTGTCAGAGCTGGAG-TTGATGGTGT-GTCCAGAGTGTTGTTCCGGCCTGATTCGTTCAAC
GGTAATGGTTTCGCCT---TTGGCGAGCTACCTTGAAGGTCCACAAAGCTGCATATCAGCGATGGAGCCGTGTCGAGCTC
GGGTGTG--------GAGGTGATCCGTCA--T---TTCTTTTTC--CTTTCGTGGTTGCTCTGGTGGTGCCAAAGGCAGG
TGA--TGGGCATTGGTGTCAAGCTCAAAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTG-GCTGATGTTCCTTTGT
GTAAAGGCTAGCATTCTGCTATTTTT-CAGCTTTGTTGGGTCGGTATGTACATGGCTTGTACTATGATCCTTATGATATA
AATGAGACATGTATTACCATGCGAAAA---------------------------------------------------
>chr3B_2504
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------TAAAGTTTCTTCAGATCCTACTCCGACGAG-----GCGATCGGTCCTTTGGTTGGGGATGGATTTGGAAATCAA
TCTGTTCAAGCATGGATGGCGTGGCGGCGGCGACATCCTCGTGGTGGACCTGTGGCCTCCGGCTTCGCCGTTGCGACGGC
GTTTGCTCCAGCGCGGGCGCGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT--TGTGGTCTGCATCGGCG------
GCATCTGGAAGATGGTGGAT------CGTGTGCTAGGTTCGTGGATCGTGGAT----GGCAAGTATGGTTTTCTCCTCCG
GCGTCTTAGTCGTGTGGGGGTGACAGATCTGGAGTTTGATGGTGT-GTCCGGGGTGTTGCCCCGGTCTGATTCGTTCAAC
GGTAATGGTTTCGCTT---TTGGTGAACCACCTTGGAGGTCCGCAAAACTGCATATCAGCGATGGAGCCGCTTCGAGCTC
AGGTGTG--------AAGGTGATCTTTCA--T---TG---TTTC--CTTTGGTGACTGCTATGGTGGTACCGGAGGCATA
TGA--CGGGCGTTGGTGTCAAGTTCAAAGGTTCCTTCGGCCTTGATTGTAATTTTACTTCTTG-GTTGTTGTTCCTTTGT
GCAAAG--------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr7B_2539
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-----------------------------------------GCGATTGGTCCTATGGTTGGGGATGGATTTGGAATCCAG
TCTGTTCAAGCAAGGATGTTGTGACGGTGGTGGCATCCTCGTGGTGGACCTGTGCCCTCATGCTCCGTCGTTACGACGAT
GTTTGCTCCAGTGCCAGCACGGAGCTTGGGAGGTAGTCCAAGAGCGGATGCAGATCT-ATGGTCTGCATTGGCG------
GCATCTGGAAGATGGTGGAT------CGTGTGATGGGTTCGTGGTGCGTGGAT----GGCAGATCTGATTTCCTCCTCCG
ACGTCTTAGTCATGTGGAGGTGCCAGATCTGGAGTTCGATGACGT-GCCTGGGGTGTTGCCCCTGTCTGATTCGTCCAAC
GGTATTGGTTTCGCCT---TTGGTGAACTACCTTGGAGGTCCGCAAAGCTGCATATCAGCGATGAAACCGTGTTGAGCTC
GGGTAAGATTGTAAGAAGATGATCCATCATTT---TG---TTTC--CTTTTGTGGTTGTTGTGGTGGTGCCAGAAGCAGG
TGA--CGGACGTTGGTGTCAAGTTCAGAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTG-GGCGTTGTTCCCTTGT
GCAAAGGATAGTGTTCTGCTATTTGTTCAGTTTTACCAGATCTGTGTGTACGTGGTTTGTACTATGATCCTTTTGATATA
AATGAGACACGTATTACCATGCAAAAAAAA------------------------------------------------
>chr4B_2540
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------------------------------------------CGATTGGTCCTATGGTTGAGGATGAATCTGGAATCCAG
TGTGTTCAAGTAAGGATGGTGTGGCGGCGGCGGCATCCTTGTGGTGGACCTGTGTCCTCGGGCACCGCCGTTGCGACGGT
GTCCACTCCAGTGTTGGCACGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT--TGTGGTCTGCATCGGCG------
GCATCTGGAAGATGATGGAT------CGTGTGTTGGGTTCGTGGTATGTGGAT----GACAGGTATGGTTTTCGCCTCCG
ACGTCTTAGTCATGTGGGGGTACCAGATCTAGAGTTCGATGGCGT-GTCCGGGTG-TTG-CCCCGTCTAATTCGTTCAAC
GATAATGGTTCCGCCT---TTGGCGAGCCACCTTGGAGGTCCGCAAAGTTGTTTATCAGTGATGGAGTCGCGTTGAGCTC
GGGTGTG--------GAGGTGATCCGTCA--T---TA---TTCC--CTTTGGTGGCAGTTGCGGTGGTGCCAGAGGCAGG
TGA--CAGGCGTTGGTGTCAAGCTTAGAGGTTTCTTCGGTCTTGTTTGTAATTTTACTTCTTG-GTTGTTGTTCCTTTGT
GCAAAGGCTAGCATTCTGTTATTTGTTCAG-TTTGCCAGATCGACATGTACATGGCTTGTATTATGATCCTTATGTTATA
AATGAAACATGTATTACCATGCAAAAAAAC------------------------------------------------
>chr1D_2565
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-------------------------------------------------------------------ATTTGGAAACCAG
ACTGTTCAAGCAAGGATGGTGCGGCGGCGGTGGCATCCTCGTGGTGGACCTGTGTCCTCGGGCTTCGCTGTTGCGATGGC
GTTTGCTCCAGCGCCGGCGTGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT--TGTGGTCTGCATCGACG------
GCATCTGGAAGATGGTGGAT------C------TGGGTTCGTGGTTCGTGGCA----TGCAGGTATGGTTTCCTCCTCCA
ACGTCTTAGTTGGGCGGGGGTGCCAGATCTAGAGTTTGATGGCGT-GTCCGGGGTGTTGCCCCGGTCTGATTCGTTCAAC
GGCAATGGCTTCGCCTTTATTGGCGAGCCACCTTGGAGGTCCGCAAAACTGCATATCAGCGATGGAGCCGCGTCGAGCTC
GGGTATG--------GAGGTGATCCATCA--T---TT---TCTC--CTTTGGTGGCTGCTATGGTGGTGCCAGAGGCAGG
TGA--TGGGCGTTGGTGTCAAGCTCAGAGGATTCTTCAGTCTTGTTTGTAA-TTTACTTCTTG-GCTGGTTTTCCTGTGT
GCAAAGGCTAGCGTTGTGCTGTCTTTCCAGTTTTGTCAGGTCGGTATGTACGTGGCTTGTACTATGATCCTTTTGATATA
AATGAGAAACGTCTTACCATGAAAAAAAA-------------------------------------------------
>chr6B_2565
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-------------------------------------------------------------------ATTTGGAAACCGG
ACTGTTCAAGCAAGGATAGTACGGCGGCGGCGACATCCTCGTGGTGGACCTGTGTCCTCGGGCTCCGCCGTTGCGACGGC
GTTTGCTCCAGCGCTGGCGTGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT--TGTAGTCTGCATTGACG------
GCATCTGGAAGATGGTGGAT------C------TGGGTTCGTGGTTCGTGGCA----GGCAGGTATGGTTTCCTCCTACA
ACATCTTAGTTGGGCGGGGATGCCAGATCTGGAGTTCGATGGCGT-GTCCGGGGTGTTGCCCCGGTCTGATTCGTTCAAC
GGCAATGGCTTCGCCTTTATTGGCGAGCCACCTTGGAGGTCCGCAAAGCTGCATATCAGCAATGGAGCCGCATCGAGCTC
GGATATG--------GAGGTGATCCGTCA--T---GT---TCTC--CTTTGGTGGCTGCTATGGTGGTGCCAGAGGCAGG
TGA--CGGGCGTTGGTGTCAAGCTCAGAGGATTCTTCAGTCTTGTTTGTAATTTTACTTCTTG-GCTGGTGTTCCTGTTT
GCAAAGGCTAGCGTTCTGCTGTCTTTTCAGTTTTATCAGGTCGGTATGTACGTGGCTTGTACTATGATTTTGATGATATA
AATGAGACATGTATTATCATGCAAAAAAA-------------------------------------------------
>chr2B_2659
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----------GCGCTGGCGCGGAGCTTGAGAGGTAGTCCAGGAGCGGATGCAGAG--TGTGGTTTGCATCGGCG------
GCATCTAAAAGATGATGGACCGTGTGC------TGGGTTCGTGGTACGTGGAT----GGTAGGTATGGTTTCCTCCTCCG
GCGTCTTAGTCGTGTGGGGTTGCCAGATCTGAAGTTCGATCGCGT-GTCCGGGGTGTTGCCCCAGCCTGGTTCGTTCAAC
GGTAATGGTTTCGCCT---TTGGCGAGGCACCTTGGAGATCCGCTAAGCTGCATATCAGCGATAGAGCCGCATCGAGCTC
GGGTGTG--------GAGGCGATCCATCA--T---TT---TTTTTCCTTTGGTGGCG---GCTGTGGCGCCAGAGGCAGG
TGA--CGGGTGTTGGTGTCAAGCTCAGAGGTTTCTTCAGTCTTGTTTGTAGTTTTACTTTTTTAATAGGTGTTCCTTTGC
GCAAAGGCTAGCGTTATGCTATTTATTCAGTTTTGTCAGGTCGATATGTACGTGGCTTGTACAATGTTCCTTATGATATA
AATGAGACATGTATTATCATGCACACAAAAACCCAC------------------------------------------
>chr2D_2659
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----------GCGCCGGCGCGGAGTTTGCGAGCTAGTCCGGGAGCGGATGTAGAC--TGTGGTCTGCATCGGTG------
GCATCTGGAAGGTGGTGGATCGTATGC------TGGGTTCGTGGTACGTGGAT----GACATATATGGTTTCCTC-TCCG
AATCCTTAGTCATGTGAGGGTGTCAGATCTGAAGTTCAATGGCGT-GTCCGGGGTGTTGCCCTGGTCTGATTCGTTCAAC
GGTAGTGATTTTGCCT---TTGGCGAGCCACCTTGAAGTTCCGCAAAGCTGCAAATCAACGATGGAGCCGCATCGAGCTC
GGGTGTG--------AAGGTGATACGTCA--TATTTT---TTTA--CTTTGATGGGTGCGGTGGTGGTGATACAGGCAGG
TGA--CGGGCGTTGGTGTCAAGCCTAGAGGTTTCTTCGGTCTTG-TTGTAATTTTACTTCTTG-GTTGATGTTCCTTTGT
GTAAAGGCTAGCGTTCTGCTATTTGTTCAGTTTTACTAGGTTGGTGTCTACATGGCTTGTACTATGATACTTATGATATA
AATGAGACATGTATTATCATGCAAAAAA--------------------------------------------------
>chr4A_2659
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----------GCGCCAGCGTGGAGCTTGGGAGGTAGTCCAGGAGCGGATGCAGAT--TGTAGTATGCATCGACG------
GCATCTGGAAGATGGTGGAT------C------TGGGTTCGTGGTTCGTGGCA----GGTAGGTATGGTTTTTTCCTCCA
ACATCTTAGTTGGGCGGGGGTGCCAGATCTGGAGTTCGATGGCGT-GTCTGGGGTGTTGCCCCAGTCCGATTCGTTCAAC
GGCAATGGCTTCGCCTTTATTGGCGAGCCACCTTAGAGGTCCGCAAAGCTGCATATCAGCGCTGGAGCCGCGTCGAGCTC
GGGTGTG--------GAGGTGATCCGTCA--T---GT---TCTC--CTTTGGTGGCTGCTATGGTGGTATCACCGGCAGG
TGA--CAGGCATTGGTGTCAAGCACAGAGGA------AGTCTTGTTTGTAATTTTACTTCCTG-GCTGGTGTTCCTGTGT
GCAAAGGCTAGCGTTTTGCTGTCTTTTCAGTTTTGTCAGGTTGGTATGTACGTGGCTTGTACTATGATTCTTATGATATA
AATGAGACATGTATTACCATGCAAAAAAAA------------------------------------------------
>chr3A_2659
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----------GCGCCGACGTAGAGCTTGAGAGGTAGTTCAGGAGCGGATGCAGAT--TGTGGTATGTATCGACG------
ACATCTAGAAGATAGTAGAT------CGTGTGATCAGTTCATGGTTTATGGTT----GGCAGATATAGTTTCCTCCTCCG
ACGTCTTAGTCGTGCGGGGTTGACAGATCTGTAATTCGATGGCGT-GTCCGGTGTGTTGCCCCGGTCTGATTCGTTCAAC
GGTAATGGCTTTGTAT---TTGGCGAGCCACCTTGGAGGTTCGCAAAGCTGCATATCAGCGATGGAGCCGTGTCGAGCTT
ATGCGAG--------CAGGTGATCCGTCA--T--------TTTT--CTTTGGTGGCTACGGTGGTGACACCAGAGGCAGA
TGA--CGGGCGTTGGTCTCAAGTTCATAGGTTTCTTCGATCTTGATTGTATTTTTCCTTCTTG-GCTAGTGTTTTTTTGT
GTAAAGACCAGCGTTCTGCTGTTTTCTTAGTTTTGTCACGTCAATGTGTACGTGACTTGTATTATGATTCTTATGATATA
AATGAGACATGTATTACCATGAAAAAAAC-------------------------------------------------
>chr4D_2670
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---------------------GAGCTTGGGAGGTAGTCCAGGAGTGGATGCAGAG--TGTGGTCTGCATCGACG------
ACATCTGGAAGATGGTGGAT------CATGTGCTGGTTTTGTGGTCCATGGATTAATTGCAGGTATGGTTTCCTCCTTCG
ACATCTTAGTCATGCGGGGT-GTCAGATATGGAGTTTGATGGTGT-GTCCGGAGTGTTGCCCCGATCTGATTCGTTCAAC
GACAATGCTTTCATCT---TTGACGAGCCACCTTGGACGTCCGCAAACCTGCATATCAGCGATGAAGCCGTGTCGAGCTC
GGA-GAA--------AAGGTTATCCTTC----ATTTT---TTTT--CTTTGGTGACTGTTGTGGTGGCGCCAGAGGCGGG
TGA--CGGGCGTTGGTGTCAAGCTCAGGGGATTCTTCGGTCTTTATTGTAATTTTCTTTCTTG-GCTGGTGCTCTTCTAT
GCAAAGGCAATCGTTCTATTGTCTTTTCAATTTTATCAGGTCAGTTTGTATGTGACTTGTAATATGATGCTTATGATATA
AATGAGACATGTATTATCATGAAAAAAAAA------------------------------------------------
>SNPs
-------------------------------S--S--S--------------------S-----S--S-----S------
--------------------------------------------------------S--------S-----S--------
---------------S-----------------S---------SS---------------------------------S-
----------S--S--S----------S--------------------------S-------------------SS----
-----------------------S--------------------------------------------S--S--------
S-----------S-----S----------S------S------S--SS----------S----------S----------
--------------------------S---S---------------S--S-------S-------------------S--
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
--------------------------------S-----------------------------------------------
---------------------------------------S----------------------------------SS----
------------------------------------------------------------------------------S-
---------------------------------------------------------------------------S----
------------S-------------------------------------------------------------------
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------------------S-------------------------------------------------------------
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----------------------------------------------------------------S-S-------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
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----------S--S-----------------------------S------------------------------------
----------------------------------S---------------------S-----------------------
------------------------------------------------S-------------------------------
----------------------------------S-------------S--------------------------S----
---S-----------------S-----S-SSS-S---------------------S------------------------
------------------------------------------------S-----------------------S-------
-------------------S----S--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------------S------S-----S--SSSSSS----------S-------SS-------------------
----S----S----S------------S---S-SSS-S--------------------S-----------S-SS------
-----------------------------------------S----------------------------S---------
------------------------------------S------S------------------------------------
----------------------------S----------------S--------------------S-------------
--------S--S--------------------------------------------------------------------
-S--S-----------S---------SSS-----------------S--S-------------S-------S-SS-----
---SS--S----------S-------------------------------------S-----------------------
------S--S------------------S-----------------SS----S------------S--------------
----------------------S-------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_796
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--------------------------------------------------------CACCTACGAAACTTCCCCGG----
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>reverse_2554
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-------------------------------------------------------------------------CCCTCCG
CCGTCATAAAGTT-------------------------------------------------------------------
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------------------------------------------------------------------------------
