Multiple sequence alignment - TraesCS1B01G189400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G189400 chr1B 100.000 2276 0 0 1 2276 339365648 339363373 0.000000e+00 4204
1 TraesCS1B01G189400 chr1D 93.935 1896 92 16 1 1883 234527370 234529255 0.000000e+00 2843
2 TraesCS1B01G189400 chr1D 83.981 206 16 8 2027 2216 234529394 234529598 4.990000e-42 182
3 TraesCS1B01G189400 chr1D 93.805 113 6 1 1911 2023 234529252 234529363 3.890000e-38 169
4 TraesCS1B01G189400 chr1A 88.591 1569 115 27 1 1555 313163113 313161595 0.000000e+00 1847
5 TraesCS1B01G189400 chr1A 94.551 312 12 3 1608 1915 313161515 313161205 5.690000e-131 477
6 TraesCS1B01G189400 chr1A 94.068 118 7 0 1886 2003 313161205 313161088 1.800000e-41 180
7 TraesCS1B01G189400 chr1A 85.714 105 15 0 2027 2131 313122404 313122300 6.650000e-21 111
8 TraesCS1B01G189400 chr2B 94.521 73 2 1 2206 2276 78831853 78831781 6.650000e-21 111
9 TraesCS1B01G189400 chr2B 96.774 62 2 0 2215 2276 405271693 405271754 1.110000e-18 104
10 TraesCS1B01G189400 chr3B 98.333 60 1 0 2217 2276 709400220 709400279 3.090000e-19 106
11 TraesCS1B01G189400 chr7A 96.721 61 2 0 2216 2276 666676655 666676595 4.000000e-18 102
12 TraesCS1B01G189400 chr4B 95.385 65 2 1 2213 2276 2497100 2497164 4.000000e-18 102
13 TraesCS1B01G189400 chr4B 94.118 68 3 1 2209 2276 519489245 519489311 4.000000e-18 102
14 TraesCS1B01G189400 chr4B 96.667 60 2 0 2217 2276 666660338 666660279 1.440000e-17 100
15 TraesCS1B01G189400 chr6B 92.857 70 3 1 2209 2276 87631956 87632025 1.440000e-17 100
16 TraesCS1B01G189400 chr6B 92.754 69 4 1 2209 2276 422566875 422566807 5.170000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G189400 chr1B 339363373 339365648 2275 True 4204.000000 4204 100.000000 1 2276 1 chr1B.!!$R1 2275
1 TraesCS1B01G189400 chr1D 234527370 234529598 2228 False 1064.666667 2843 90.573667 1 2216 3 chr1D.!!$F1 2215
2 TraesCS1B01G189400 chr1A 313161088 313163113 2025 True 834.666667 1847 92.403333 1 2003 3 chr1A.!!$R2 2002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 959 1.00358 ACCACATCACACACTCCCATC 59.996 52.381 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 2027 0.592247 GTTGCAAAGTCACTGTGCGG 60.592 55.0 15.49 0.0 46.83 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 145 1.499049 AACTTCGTGTCCTCGCTTTC 58.501 50.000 0.00 0.00 0.00 2.62
223 224 7.012894 TGCGGAAATAGTGATTTAGTTATTGGG 59.987 37.037 0.00 0.00 35.33 4.12
248 249 7.394099 GTGTTTTCTTTTCTCATTCTTGTTGC 58.606 34.615 0.00 0.00 0.00 4.17
362 365 6.822170 AGTAGGGATCGGTGAAAAATAACTTC 59.178 38.462 0.00 0.00 0.00 3.01
427 430 5.895636 AAATCATTTCAGCACGGTATTGA 57.104 34.783 0.00 0.00 0.00 2.57
445 448 1.073125 TGAGGAAAATCGCAAGGGTGA 59.927 47.619 0.00 0.00 38.05 4.02
454 457 2.113774 CAAGGGTGAGCAGGTGCA 59.886 61.111 4.48 0.00 45.16 4.57
473 476 4.947147 GGGCACGCACCTGTCCAA 62.947 66.667 0.00 0.00 35.80 3.53
650 653 4.568152 ACTCGTCAAAACCCATTCAAAG 57.432 40.909 0.00 0.00 0.00 2.77
751 755 3.353836 GCACCCGCGTGTCACAAT 61.354 61.111 4.92 0.00 42.39 2.71
783 788 5.782047 ACTCGAATGAAAATTTGCCATTGA 58.218 33.333 18.24 14.87 31.40 2.57
785 790 5.782047 TCGAATGAAAATTTGCCATTGACT 58.218 33.333 18.24 1.44 31.40 3.41
792 797 7.370383 TGAAAATTTGCCATTGACTTACTCTC 58.630 34.615 0.00 0.00 0.00 3.20
940 954 1.675483 TGCAAACCACATCACACACTC 59.325 47.619 0.00 0.00 0.00 3.51
944 958 1.067295 ACCACATCACACACTCCCAT 58.933 50.000 0.00 0.00 0.00 4.00
945 959 1.003580 ACCACATCACACACTCCCATC 59.996 52.381 0.00 0.00 0.00 3.51
951 965 1.151810 ACACACTCCCATCCCACCT 60.152 57.895 0.00 0.00 0.00 4.00
1126 1140 4.240103 CGATCATCAGCGGGGCCA 62.240 66.667 4.39 0.00 0.00 5.36
1127 1141 2.192979 GATCATCAGCGGGGCCAA 59.807 61.111 4.39 0.00 0.00 4.52
1184 1198 2.602676 GGGGGTGCTTCTGCCAGTA 61.603 63.158 0.00 0.00 38.71 2.74
1276 1290 1.509923 GCCGTACCGAAGTGCTAGT 59.490 57.895 0.00 0.00 0.00 2.57
1289 1303 2.123425 CTAGTAGCCGGGCCTCCA 60.123 66.667 17.02 0.00 0.00 3.86
1335 1358 2.398498 CACGCTGCCTATTGCTACTAG 58.602 52.381 0.00 0.00 42.00 2.57
1346 1369 7.663081 TGCCTATTGCTACTAGTACTACGTAAT 59.337 37.037 0.00 3.82 42.00 1.89
1381 1404 1.068753 CGAGCTCCTACCATGGCTG 59.931 63.158 13.04 4.45 35.01 4.85
1395 1418 2.874780 GCTGCTGGTACGACGTCG 60.875 66.667 34.58 34.58 46.33 5.12
1411 1434 2.504244 CGGTCGAACAGCTCCGTC 60.504 66.667 0.00 0.00 38.45 4.79
1472 1499 5.404096 ACAATCGTGTGTTCATGTATCGTA 58.596 37.500 0.00 0.00 36.31 3.43
1529 1557 3.859627 GCCTCTGCGTAGTTTGTTACTCA 60.860 47.826 0.00 0.00 38.33 3.41
1533 1561 6.401153 CCTCTGCGTAGTTTGTTACTCATTTC 60.401 42.308 0.00 0.00 38.33 2.17
1540 1568 9.530129 CGTAGTTTGTTACTCATTTCTCAATTC 57.470 33.333 0.00 0.00 38.33 2.17
1574 1650 4.916870 TGTCGATCGATCTCGTGTAATTT 58.083 39.130 22.50 0.00 39.62 1.82
1602 1678 4.649674 ACCTCCGACAATATATATCCGCAT 59.350 41.667 0.00 0.00 0.00 4.73
1694 1770 3.206150 GGACAGTACATGTATGGGCAAG 58.794 50.000 9.18 0.00 44.17 4.01
1815 1895 2.118313 ATAAACCTGTACCGTTGGCC 57.882 50.000 0.00 0.00 0.00 5.36
1918 2027 0.526662 CGTAGTCCACAGGAGACACC 59.473 60.000 0.00 0.00 36.68 4.16
1928 2037 2.734591 GAGACACCCGCACAGTGA 59.265 61.111 4.15 0.00 38.63 3.41
1941 2050 2.801063 CACAGTGACTTTGCAACCAAG 58.199 47.619 0.00 0.00 31.52 3.61
2012 2121 3.177600 CCGTTCATGAACTGCGGG 58.822 61.111 30.45 21.92 39.08 6.13
2023 2132 2.125310 CTGCGGGGCACACGATAA 60.125 61.111 0.75 0.00 33.79 1.75
2024 2133 2.435234 TGCGGGGCACACGATAAC 60.435 61.111 0.75 0.00 31.71 1.89
2029 2165 1.583054 GGGGCACACGATAACATCTC 58.417 55.000 0.00 0.00 0.00 2.75
2035 2171 4.081761 GCACACGATAACATCTCAAAACG 58.918 43.478 0.00 0.00 0.00 3.60
2038 2174 4.992319 ACACGATAACATCTCAAAACGGAA 59.008 37.500 0.00 0.00 0.00 4.30
2041 2177 6.036083 CACGATAACATCTCAAAACGGAATCT 59.964 38.462 0.00 0.00 0.00 2.40
2043 2179 6.036083 CGATAACATCTCAAAACGGAATCTGT 59.964 38.462 0.00 0.00 0.00 3.41
2047 2183 5.049405 ACATCTCAAAACGGAATCTGTGAAC 60.049 40.000 0.00 0.00 0.00 3.18
2088 2224 4.992319 CCGTACACACTGATAGAAAAACCA 59.008 41.667 0.00 0.00 0.00 3.67
2091 2227 6.128902 CGTACACACTGATAGAAAAACCAGTC 60.129 42.308 0.00 0.00 37.74 3.51
2113 2249 5.231568 GTCATCTAATTGTAAACGTCCGGAG 59.768 44.000 3.06 1.12 0.00 4.63
2168 2316 0.460987 CCCAGGCTCTTACGCTTCAG 60.461 60.000 0.00 0.00 0.00 3.02
2200 2350 6.302269 ACTCTCCATCCCATAATAAAGCTTG 58.698 40.000 0.00 0.00 0.00 4.01
2217 2368 6.490877 AAGCTTGAAAAACGTTTTCATACG 57.509 33.333 25.37 14.10 46.52 3.06
2218 2369 4.973663 AGCTTGAAAAACGTTTTCATACGG 59.026 37.500 25.37 14.41 45.44 4.02
2219 2370 4.374607 GCTTGAAAAACGTTTTCATACGGC 60.375 41.667 25.37 19.12 45.44 5.68
2220 2371 4.288670 TGAAAAACGTTTTCATACGGCA 57.711 36.364 25.37 12.33 45.44 5.69
2221 2372 4.669318 TGAAAAACGTTTTCATACGGCAA 58.331 34.783 25.37 2.71 45.44 4.52
2222 2373 5.282510 TGAAAAACGTTTTCATACGGCAAT 58.717 33.333 25.37 6.84 45.44 3.56
2223 2374 5.174035 TGAAAAACGTTTTCATACGGCAATG 59.826 36.000 25.37 0.00 45.44 2.82
2224 2375 2.256445 ACGTTTTCATACGGCAATGC 57.744 45.000 0.00 0.00 45.44 3.56
2225 2376 1.810151 ACGTTTTCATACGGCAATGCT 59.190 42.857 4.82 0.00 45.44 3.79
2226 2377 3.004171 ACGTTTTCATACGGCAATGCTA 58.996 40.909 4.82 0.00 45.44 3.49
2227 2378 3.181514 ACGTTTTCATACGGCAATGCTAC 60.182 43.478 4.82 0.00 45.44 3.58
2228 2379 3.181515 CGTTTTCATACGGCAATGCTACA 60.182 43.478 4.82 0.00 37.86 2.74
2229 2380 4.095610 GTTTTCATACGGCAATGCTACAC 58.904 43.478 4.82 0.00 0.00 2.90
2230 2381 1.566404 TCATACGGCAATGCTACACG 58.434 50.000 4.82 2.29 0.00 4.49
2231 2382 1.134936 TCATACGGCAATGCTACACGT 60.135 47.619 4.82 8.83 41.10 4.49
2232 2383 2.099427 TCATACGGCAATGCTACACGTA 59.901 45.455 14.59 14.59 43.05 3.57
2233 2384 1.912001 TACGGCAATGCTACACGTAC 58.088 50.000 4.82 0.00 38.79 3.67
2234 2385 0.038067 ACGGCAATGCTACACGTACA 60.038 50.000 4.82 0.00 35.85 2.90
2235 2386 1.072391 CGGCAATGCTACACGTACAA 58.928 50.000 4.82 0.00 0.00 2.41
2236 2387 1.461512 CGGCAATGCTACACGTACAAA 59.538 47.619 4.82 0.00 0.00 2.83
2237 2388 2.723618 CGGCAATGCTACACGTACAAAC 60.724 50.000 4.82 0.00 0.00 2.93
2257 2408 8.637281 ACAAACGATTTAAAGGTTTTTACAGG 57.363 30.769 14.20 7.61 31.95 4.00
2258 2409 8.468399 ACAAACGATTTAAAGGTTTTTACAGGA 58.532 29.630 14.20 0.00 31.95 3.86
2259 2410 9.471084 CAAACGATTTAAAGGTTTTTACAGGAT 57.529 29.630 14.20 0.00 31.95 3.24
2260 2411 9.471084 AAACGATTTAAAGGTTTTTACAGGATG 57.529 29.630 12.08 0.00 34.31 3.51
2261 2412 7.599171 ACGATTTAAAGGTTTTTACAGGATGG 58.401 34.615 0.00 0.00 43.62 3.51
2262 2413 7.231925 ACGATTTAAAGGTTTTTACAGGATGGT 59.768 33.333 0.00 0.00 43.62 3.55
2263 2414 8.085909 CGATTTAAAGGTTTTTACAGGATGGTT 58.914 33.333 0.00 0.00 43.62 3.67
2267 2418 6.659745 AAGGTTTTTACAGGATGGTTAACC 57.340 37.500 18.27 18.27 43.62 2.85
2268 2419 5.960704 AGGTTTTTACAGGATGGTTAACCT 58.039 37.500 24.78 10.91 43.62 3.50
2269 2420 6.378745 AGGTTTTTACAGGATGGTTAACCTT 58.621 36.000 24.78 18.87 41.54 3.50
2270 2421 6.266786 AGGTTTTTACAGGATGGTTAACCTTG 59.733 38.462 24.78 18.27 41.54 3.61
2271 2422 6.265876 GGTTTTTACAGGATGGTTAACCTTGA 59.734 38.462 24.78 5.89 43.62 3.02
2272 2423 7.039293 GGTTTTTACAGGATGGTTAACCTTGAT 60.039 37.037 24.78 10.77 43.62 2.57
2273 2424 8.364894 GTTTTTACAGGATGGTTAACCTTGATT 58.635 33.333 24.78 8.08 43.62 2.57
2274 2425 7.461182 TTTACAGGATGGTTAACCTTGATTG 57.539 36.000 24.78 17.36 43.62 2.67
2275 2426 4.344104 ACAGGATGGTTAACCTTGATTGG 58.656 43.478 24.78 11.00 43.62 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.896829 CCCCGAGCTCCTCCGCTA 62.897 72.222 8.47 0.00 41.08 4.26
41 42 2.808543 GTGTTCAACTCATTTCCTCGCT 59.191 45.455 0.00 0.00 0.00 4.93
223 224 7.394099 GCAACAAGAATGAGAAAAGAAAACAC 58.606 34.615 0.00 0.00 0.00 3.32
248 249 6.917477 TGACAAGGAAAAGATTGATGAAAACG 59.083 34.615 0.00 0.00 0.00 3.60
327 330 4.935808 CACCGATCCCTACTTATTATTGCC 59.064 45.833 0.00 0.00 0.00 4.52
336 339 6.718294 AGTTATTTTTCACCGATCCCTACTT 58.282 36.000 0.00 0.00 0.00 2.24
341 344 5.163652 CCAGAAGTTATTTTTCACCGATCCC 60.164 44.000 0.00 0.00 0.00 3.85
362 365 1.601759 CCCAGCCTCACACAACCAG 60.602 63.158 0.00 0.00 0.00 4.00
427 430 1.826385 CTCACCCTTGCGATTTTCCT 58.174 50.000 0.00 0.00 0.00 3.36
523 526 9.461312 ACTTAAAACTTGATATGACCTTATGCA 57.539 29.630 0.00 0.00 0.00 3.96
555 558 4.122046 GCAAAATCAGCAAGTTTTGGAGT 58.878 39.130 16.76 0.00 42.58 3.85
616 619 7.543172 GGGTTTTGACGAGTTTTTAAAACTTCT 59.457 33.333 21.83 11.44 39.73 2.85
739 743 1.526887 ACAAGAGAATTGTGACACGCG 59.473 47.619 3.53 3.53 0.00 6.01
751 755 7.803189 GCAAATTTTCATTCGAGTACAAGAGAA 59.197 33.333 0.00 0.00 0.00 2.87
810 818 5.059833 CACTTGACTATTCTGCCCTTATCC 58.940 45.833 0.00 0.00 0.00 2.59
812 820 4.080356 TGCACTTGACTATTCTGCCCTTAT 60.080 41.667 0.00 0.00 0.00 1.73
889 901 0.664767 GCACGTTGCCGCCAATTTAA 60.665 50.000 0.00 0.00 37.42 1.52
940 954 2.613696 TGGTGGAGGTGGGATGGG 60.614 66.667 0.00 0.00 0.00 4.00
970 984 3.628017 ACTTTCTTTTGATCGCAAACGG 58.372 40.909 0.00 0.00 43.27 4.44
1134 1148 1.367665 GTTGTTGCAGCACGTCGTC 60.368 57.895 1.37 0.00 0.00 4.20
1136 1150 1.218875 TAGGTTGTTGCAGCACGTCG 61.219 55.000 1.37 0.00 0.00 5.12
1320 1340 5.371526 ACGTAGTACTAGTAGCAATAGGCA 58.628 41.667 1.87 0.00 43.63 4.75
1381 1404 2.202401 GACCGACGTCGTACCAGC 60.202 66.667 33.49 13.80 37.74 4.85
1395 1418 2.126031 GGACGGAGCTGTTCGACC 60.126 66.667 0.00 0.00 34.65 4.79
1445 1472 6.840789 CGATACATGAACACACGATTGTATTG 59.159 38.462 0.00 0.00 33.30 1.90
1472 1499 6.072175 ACGTACACACCATTTTATTCTTGCAT 60.072 34.615 0.00 0.00 0.00 3.96
1529 1557 9.421806 GACATCTATCGATCAGAATTGAGAAAT 57.578 33.333 0.00 0.00 36.61 2.17
1533 1561 6.606768 TCGACATCTATCGATCAGAATTGAG 58.393 40.000 0.00 0.00 45.84 3.02
1549 1577 2.214347 ACACGAGATCGATCGACATCT 58.786 47.619 22.06 20.08 45.56 2.90
1574 1650 6.541278 CGGATATATATTGTCGGAGGTACAGA 59.459 42.308 0.00 0.00 0.00 3.41
1631 1707 1.836166 CTGACCATGACCTGATGACCT 59.164 52.381 0.00 0.00 0.00 3.85
1694 1770 1.580845 AAGCGTTGAGTGGCATCTGC 61.581 55.000 0.00 0.00 41.14 4.26
1815 1895 2.398554 CCATTGAAGGTCCACGCGG 61.399 63.158 12.47 0.00 0.00 6.46
1918 2027 0.592247 GTTGCAAAGTCACTGTGCGG 60.592 55.000 15.49 0.00 46.83 5.69
1941 2050 2.291457 AAACCACGCCAGTGTTTGCC 62.291 55.000 0.00 0.00 46.56 4.52
1986 2095 1.480954 GTTCATGAACGGGGAGAGCTA 59.519 52.381 22.09 0.00 0.00 3.32
1994 2103 3.177600 CCGCAGTTCATGAACGGG 58.822 61.111 31.11 28.13 45.50 5.28
2012 2121 4.403453 GTTTTGAGATGTTATCGTGTGCC 58.597 43.478 0.00 0.00 0.00 5.01
2023 2132 4.641396 TCACAGATTCCGTTTTGAGATGT 58.359 39.130 0.00 0.00 0.00 3.06
2024 2133 5.385617 GTTCACAGATTCCGTTTTGAGATG 58.614 41.667 0.00 0.00 0.00 2.90
2029 2165 2.307049 GCGTTCACAGATTCCGTTTTG 58.693 47.619 0.00 0.00 0.00 2.44
2035 2171 0.731514 TCGACGCGTTCACAGATTCC 60.732 55.000 15.53 0.00 0.00 3.01
2038 2174 1.002250 GTGTCGACGCGTTCACAGAT 61.002 55.000 26.03 0.30 34.99 2.90
2041 2177 3.020105 CGTGTCGACGCGTTCACA 61.020 61.111 36.22 23.68 44.02 3.58
2058 2194 2.717580 TCAGTGTGTACGGATGTGAC 57.282 50.000 0.00 0.00 0.00 3.67
2088 2224 5.105635 TCCGGACGTTTACAATTAGATGACT 60.106 40.000 0.00 0.00 0.00 3.41
2091 2227 5.005394 CACTCCGGACGTTTACAATTAGATG 59.995 44.000 0.00 0.00 0.00 2.90
2158 2296 5.106396 GGAGAGTAGTTACACTGAAGCGTAA 60.106 44.000 0.00 0.00 0.00 3.18
2168 2316 6.726490 TTATGGGATGGAGAGTAGTTACAC 57.274 41.667 0.00 0.00 0.00 2.90
2180 2328 7.969690 TTTTCAAGCTTTATTATGGGATGGA 57.030 32.000 0.00 0.00 0.00 3.41
2182 2330 7.759433 ACGTTTTTCAAGCTTTATTATGGGATG 59.241 33.333 0.00 0.00 0.00 3.51
2183 2331 7.836842 ACGTTTTTCAAGCTTTATTATGGGAT 58.163 30.769 0.00 0.00 0.00 3.85
2184 2332 7.222000 ACGTTTTTCAAGCTTTATTATGGGA 57.778 32.000 0.00 0.00 0.00 4.37
2185 2333 7.883229 AACGTTTTTCAAGCTTTATTATGGG 57.117 32.000 0.00 0.00 0.00 4.00
2186 2334 9.791838 GAAAACGTTTTTCAAGCTTTATTATGG 57.208 29.630 25.86 0.00 0.00 2.74
2200 2350 5.595065 CATTGCCGTATGAAAACGTTTTTC 58.405 37.500 25.86 18.49 41.27 2.29
2216 2367 1.072391 TTGTACGTGTAGCATTGCCG 58.928 50.000 4.70 4.23 0.00 5.69
2217 2368 2.723618 CGTTTGTACGTGTAGCATTGCC 60.724 50.000 4.70 0.00 42.72 4.52
2218 2369 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
2231 2382 9.733219 CCTGTAAAAACCTTTAAATCGTTTGTA 57.267 29.630 12.00 9.29 30.41 2.41
2232 2383 8.468399 TCCTGTAAAAACCTTTAAATCGTTTGT 58.532 29.630 12.00 10.02 30.41 2.83
2233 2384 8.859517 TCCTGTAAAAACCTTTAAATCGTTTG 57.140 30.769 12.00 3.10 30.41 2.93
2234 2385 9.471084 CATCCTGTAAAAACCTTTAAATCGTTT 57.529 29.630 7.42 7.42 0.00 3.60
2235 2386 8.085909 CCATCCTGTAAAAACCTTTAAATCGTT 58.914 33.333 0.00 0.00 0.00 3.85
2236 2387 7.231925 ACCATCCTGTAAAAACCTTTAAATCGT 59.768 33.333 0.00 0.00 0.00 3.73
2237 2388 7.599171 ACCATCCTGTAAAAACCTTTAAATCG 58.401 34.615 0.00 0.00 0.00 3.34
2241 2392 8.640651 GGTTAACCATCCTGTAAAAACCTTTAA 58.359 33.333 20.12 0.00 35.64 1.52
2242 2393 8.005976 AGGTTAACCATCCTGTAAAAACCTTTA 58.994 33.333 26.26 0.00 38.89 1.85
2243 2394 6.842280 AGGTTAACCATCCTGTAAAAACCTTT 59.158 34.615 26.26 0.00 38.89 3.11
2244 2395 6.378745 AGGTTAACCATCCTGTAAAAACCTT 58.621 36.000 26.26 0.00 38.89 3.50
2245 2396 5.960704 AGGTTAACCATCCTGTAAAAACCT 58.039 37.500 26.26 0.00 38.89 3.50
2246 2397 6.265876 TCAAGGTTAACCATCCTGTAAAAACC 59.734 38.462 26.26 0.00 38.89 3.27
2247 2398 7.279750 TCAAGGTTAACCATCCTGTAAAAAC 57.720 36.000 26.26 0.00 38.89 2.43
2248 2399 8.364142 CAATCAAGGTTAACCATCCTGTAAAAA 58.636 33.333 26.26 2.87 38.89 1.94
2249 2400 7.039363 CCAATCAAGGTTAACCATCCTGTAAAA 60.039 37.037 26.26 3.19 38.89 1.52
2250 2401 6.435904 CCAATCAAGGTTAACCATCCTGTAAA 59.564 38.462 26.26 3.51 38.89 2.01
2251 2402 5.949354 CCAATCAAGGTTAACCATCCTGTAA 59.051 40.000 26.26 3.53 38.89 2.41
2252 2403 5.505780 CCAATCAAGGTTAACCATCCTGTA 58.494 41.667 26.26 5.02 38.89 2.74
2253 2404 4.344104 CCAATCAAGGTTAACCATCCTGT 58.656 43.478 26.26 1.38 38.89 4.00
2254 2405 4.989279 CCAATCAAGGTTAACCATCCTG 57.011 45.455 26.26 16.38 38.89 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.