>input_sequence_85172
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-----------------------------------------------------ATGGCGAAGGCCGCAGCGATGCTCGTG
CTGGTGGCGCTAGTGGTGGCGGCGATGGCAACGGGCGGAGCGGCGCAGTGCAACGCGGGGAGCCTGGCGGTGTGCGCCTC
CCCGATCATCAGCGGGGCCAAGCCGTCGACGACGTGCTGCAACAACCTAAAGAGTCAGCGGGGGTGCTTCTGCCAGTACG
CGCGCAACCCCGCGTACTCCAGCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCAGCTGCGGCGTCGCCGTACCG
AAGTGCTAG-----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G189400
ACATCTCCCACGGTAGCGGAGGAGCTCGGGGTGACTGACACAGCGAGGAAATGAGTTGAACACAAGTTTTTTTAGTCGAA
TACGAGTTTCTGGCCATAATTGCTTAGATATGGCATCTTGAGTGAAACTTCGTGTCCTCGCTTTCATAGGGTGAACCCAA
TGATGTCCGGGCAAGGGCGCAACTCCTTAAAGGTTGTTGCGGAAATAGTGATTTAGTTATTGGGTGTTTTCTTTTCTCAT
TCTTGTTGCG-TTTTCATCAATCTTTTCCTTGTCATGTAATAA-GTGAATATTTTGGCCTCAATATCTTGCATGTAGTTA
TACTAAATCGGCAATAATAAGTAGGGATCGGTGAAAAATAACTTCTGGTTGTGTGAGGCTGGGAGGTTTTGACTTCCTTC
TGAAAATAAATCATTTCAGCACGGTATTGAGGAAAATCGCAAGGGTGAGCAGGTGCAGGGGCACGCACCTGTCCAACCAT
GCTCAACCGCATGATTGCTTCGCAGTCCAAAAAATGGTTGTATTTTGCATAAGGTCATATCAAGTTTTAAGTTTTAAACT
CCAAAACTTGCTGATTTTGCCATTTATTTCTATCAAGTTTCAGCACTTGAAACTTGTTAGAAGTTTTAAAAACTCGTCAA
AACCCATTCAAAGGTCGTCTTTTAATTTAGACTTTTGATTCAAAAGATACAAAAAA-TCAAAATTAAAAGCCCAAAGAAA
AATAGGTTCGGTGCTCCGCACCCGCGTGTCACAATTCTCTTGTACTC-GAATGAAAATTTGCCATTGACTTACTCTCG--
-AAAAAAATTACCAGCCGGATAAGGGCAGAATAGTCAAGTGCAAAATGTCCGGGGCTT---ACTTCCGCAGGGGTGCCT-
TGCAAGGACGCCTCCTGCCTTTAAATTGGCGGCAACGTGCCTCCCGTGTACTGCAAACCACAT--CACACACTCCCATCC
CACCTCCACCACCGCGGTACGTACCGTTTGCGATCAAAAGAAAGTCGAGCCATATGGCGAAGGCCGCAGCGATGCTCGTG
CTGGTGGCGCTAGTGGTGGCGGCGATGGCAACGGGCGGAGCGGCGCAGTGCAACGCGGGGAGCCTGGCGGTGTGCGCCTC
CCCGATCATCAGCGGGGCCAAGCCGTCGACGACGTGCTGCAACAACCTAAAGAGTCAGCGGGGGTGCTTCTGCCAGTACG
CGCGCAACCCCGCGTACTCCAGCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCAGCTGCGGCGTCGCCGTACCG
AAGTGCTAGTAGCCGGGCCTCCACCGCCG------CCGGCGTGCTAGGCAGCGCCACGCTGCCTATTGCTACTA---GTA
CTACGTAATGTACTACTACTACGTACGAGCTCCTACCATGGCTGCTGGTACGACGTCGGTCGAACAGCTCCGTCCGAACC
GTGTGTT-CATGTATCTTTTTTT---CTCTCCAATACAATCGTGTGTTCATGTATCGTATGCAAGAATAAAATGGTGTGT
ACGTGTT-GATCCAGCCTCTGCGTAGTTTGTTACTCATTTCTCAATTCTGATCGATAGATGTCGATCGAT----------
--------------------------------------CTCGTGTAATTTCTGTACCTCCGACAATATATATCCGCATCT
TAACAAAAAGTTGCTACTATATTGCTAGGTCATCAGGTCATGGTCAGCTGGTCACTGCATCACTAAATGGACAGTACATG
TATGGGCAAGCAGATGCCACTCAA----CGCTTACACTGTTGTTGATGTGGATGGCCAGCTGAGCCAATTAAGAGCCCAT
TCAAGACCAAACATAATCCTGTCGAGCCATTCATTATAAACCTGTACCGTTGGCCCGCGTGGACCTTCAATGGCCGTGAC
CGTCATGACTCTGAAGCTTCGTCTCTCCGTCGCGTGATGGAGCTATGCT-----------------------------TT
AGGATTTCGTAGTCCACAGGAGACACCCGCACAGTGACTTTGCAACCAAGGCAAACACTGGCGTGGTTTCTCAACATCGA
AATATGAACTTTCATAGCTCTCCCCGTTCATGAACTGCGGGGCACACGATAACA--------------------------
-TCTCAAAACGGAATCTGTGAACGCGTCGACACGTCACATCCGTACACACTGATAGAAAAACCAGTCATCTAATTGTAAA
CGTCCGGAGTGGCGGAGTTGGTACCCG--GCGAGCCGGGGCACCTGCCCAGGCTCTTACG----------CTTCAGTGTA
ACTACTCTCCATCCC--ATAATAAAGCTTG-AAAAACGTTTTCATACGGCAATGCTACACGTACAAACGATTTAAAGGTT
TTTACAGGATGGTTAACCTTGATTGG
>chr1D_1
ACATCTCCCACGGCAGCGGAGGAGCTCGGGGTGACTGACACGGCGAGGAAATGAGTTGAACACAAGTTTTTT-AGCCGAA
TACGAGTTTCTAGCCATAATTGCTTAGATATGGCATCTTGAGTGAAGCTTCGTGTCCTCGCTTTTATAGGGTGAACCCAA
TGATGTCCGGGCAAGGGCGCAACTCCTTAAAGGTTGTTGCAGAAATAGTGATTTAGTTATTGG-TGTTTTCTTTTCTCAT
TCTTGTTGTG-TTTTCATCAATCTTTTCCTTGTCATGTAATAA-GTGAATATTTTGGCCTCAATATCTTGCATGTAGTTA
TACTAAATCAGCAATAATTAGTATCGATCGGTGAAAGATAATTTTTGGTTGTGTGAGGCTAGGAGGTTTTGACTTCCTTC
TGAAAATAAATCATTTCAGCACGGTATTGCGGAAAATCGCAAGGGTGCGCATGTGCGGGGGCACGCACTTGTCCAGCCAT
GCTCAACCGCACGAGTGCTTCGCGGTCCATAAAATGGTTGTATTTCGCATAAGGGCATATCAAGTTTTTAGTTTTAATCT
CCAAAACTTGCTGATTTTGCCATTTATTTCTATCAAGTTTCAGCACTTGAAATTTGTTTGAAGTTTTAAAAACTCGTCAA
AACCCATTCAAAAGTCGTCTTTTAATTTAGACTTTTGATTCAAAAGATA-AAAAAA-TCAAAATTAAAAGCCCAAAGAAA
AATAGGTTCGGTGCTCCGCACCAGCGTGTCACAAATCTCTTGTATTCAGAATGAAAATTTGCCATTGGCGTACTCTTGAA
AAAAAAAATTGCCAGCCCGGTAAGGGCAGATTAGTCAAGTACAAAATGTCCGGGGCTT---ACTTCCGCAGGTGTGCCTC
TGCAAGGGCGCCTCCTGCCTATAAATTGGCGGCAACGTGCCTCCCGTGTACTGCAAACCACTG--CACACACTTCCA--C
CACCACCACCACCGCGGCACGTA-CGTTTGCGATCAAAAGAAAGTCGAGCCATATGGCGAAGGCCGCAGCGATGCTCGTG
CTGGTGGCGCTGGTGGTGGCGGCGATGGCAACGGGCGGAGCGGCGCAGTGCAACGCGGGGAGCCTGGCGGTGTGCACCTC
CCCGATCATCAGCGGGACCCCGCCGTCCAAGACGTGCTGCAACAACCTAAAGAGTCAGCGGGGGTGCTTCTGCAAGTTCG
CGCGCAACCCCGCGTACTCCAGCTACATCAACAGCCGCAACGCCGGCAAGACCCTCACCAGCTGCGGCATCGCCGTACCG
AAGTGCTAGGAGCCGGGCCTCCGCCGCCGG---CGCCGGCGTGCTAGGCACCGCCCCGCCGCCTATTGCTACTACTACTA
CTACGTAACG------TACTACGTACGAGCTCCTACCATGGCTACTGGTACGACGTCCGTCGAACAGTTCCGTGCGAACC
GTGTGTTTCATGTATCTTTTTTTTCCCTCTCGAATACAATCGTGTGTTCATGTATCGTGTGCAAGAATAAAATGGTGTGT
ACGTGTT-GATCCAGCCTCTGCGTAGTTTGTTACTCCTTTGTCAATTTTTATCGATGGATGTCGATCGAT----------
--------------------------------------CTCGTGTAATTCCTGTACCTCCGACAATATATATCCGCACCT
TAACAAAAAGTTGCTACTATATTGCTTGGTCATCAGGTCATGGTCAGCTGGTCACTGCATCACTAAATGGACAGTACATG
TACGGGCAAACAGATGCCACTCAA----CGCTTACACTGTTGTTCACATCGATGGCCAGCTGAGCCAATTAAGAGCCCAT
TCAAGACCAAACATAATCCTGTCGAGCCATTCATTATAAACCTGTACCGTTGGCGCGCGTGGACCTTCAATGGCCGTGAC
CGTCATGACTCTGAAGCTTCGTCTCTCCGTCGCGTGATGGAG--------------------------------------
----------------------ACACACGCACAGTGGGTTTGCAACC-AAGCAAACACTGGCGTGGTTTCTCAACATCGA
AATATGAACTTTCACAGCTCTCACCGTTCATGAACTGCGGAGCACACGATATAAACTCATTAGGACATCTCCAACCCCAG
CTCTTAAAACAGAGTCCGCGAATGCGTCGACACATCACATCCGTACACACTGATAGAAAAACCGGTGATCTAATTGTAAA
CGTCCGGAATGGCGGAGCTGGTACCCGCGGCGAGCCCGGGCACCTGCCCAGGCTCGTACGCAAGGTACTGCTTCATTGTA
ACTACTCCCTTCGTCTTATAATAAAGCTTACAAAAACGTTTTCATA----------------------------------
--------------------------
>chr1A_1
ACATCTCCCACGGCAGCAGAGGAGCTCGGGATGACTGACACGGCGAGGAAATGAATTGAGCACAA-TTTTTTTAGTCGAA
TACGAGTTTCTGGCCATAATTGCTTAGATATGGCATCTTGAGTGAAACTTCATGTCCTTGCTTTTATAGGGTGAACCCAA
TGATGTCTGGGCAAGGGCGCAACTCCTTAAAGGCTATCGTGGAAATAGTGATTTAGTTATTTG-TGTTTTCTTTTCTCAT
TCTTGTTGTGTTTTTCATCATTCTTTTCCTTGAAATGTAATAAAGTTAATGTTTTGGCCTTAATGTCTTGCATGTAGTTA
TACTAAATCAGCGATAATTAGTATGGATCGGTGAAAAATAACTTTTGGGTTTGTGAGGCTGGAAGGTTTTGACTTCCTTC
-------AAATCATTTCAACACGGTATTGCAAAAATTCGCAAGGGCGCGGAGGTGCGGGGGCACGCACCTTTCCGGCCAT
GCTGAACCGCACGGTTTCTTGGTCCAT--AAAAGTAGTTGTATTTCGCATAAGGTTATACCAAGTTGTAAGTTTTAATCT
CCAAAACTTGCTGATTTTGCCGTTTATTTCTATCCAGTTTCAGCACTTGAAACTTGTT-GAAGTTCTAAAAACTCGCCAA
AACCCATTCAAAACTCATCTTTTAATATGGGTTTTTGATTCAAAAGATA-CAAAAAATCAAAATCAAAAGCCCAAAGAAA
AGTAGCTTCGGTGCTCCGCACCTGCGTGTCACAAATCTCTTGTACTCAGAATGAAAATTTGCC-----------------
-------------AGCCCGGTAAGGGCAGAATAGTCAAGTGCAAAATGTCCGGGGCTTTGTACTTCCGCAAGGGTGGCT-
TGCAAGGACGCCTCCTGCCTATAAATTGGCGGCAACGTGCCTCCCGTGTACTGCAAACCACATCACACACACTTCCA--C
CACCACCACC---GCGGCACGTA-CGTTTGCGATCAAAAGAAAGTCGAGCCATATGGCGAAGGCCGCAGCGATGCTCGTG
CTGGTGGCGCTGGTGGCGGCGGCGATGGCAACGGGCGGAGCGGCGCAGTGCAACGCCGGGAACCTGGCGGTGTGCGCCTC
CCCGATCGTGAGCGGGACCCCGCCGTCCAAGACGTGCTGCAACAACCTAAAGAGTCAGCGGGGGTGCTTCTGCCAGTTCG
CGCACAACCGCGCGTACTCCAGCTACATCAACAGCCCCAACGCCCGCAAGACCCTCGTCAGCTGCGGCGTCCCCGTACCG
AAGTGCTAGGAGCCGGGCCTCCGCCGCCGCCGCCGGCGGCGTGCTAGGCAGCGCCACGCCGCCTATG----CTA---CTA
ATACGTAACGTACTACC---ACGTACGAGCTCCTACCATGGCTACTGGTACGACGTCCGTCGAGCAGCTCCGTGCGAACC
GTGTGTTTCATGTATCTTTTTTTT---TCTCGAGTACAATCGTGTGTTCATGTATCGTGCGCAAGAATAAAATGGTGTGT
ACGTGTTTGATCCAGCCTCTGCGTAGTTTGTTACTCCTTTGTCAATTTTGATCGATGGATGTGACGGACAATACTTGCTT
AAACCTAGCACCCTGTTGCCTTGCTTTTCATCCAGCCGCTCATGTAATTGATGTACCTTCGACAC---------------
------AAAGTTGCTACTGTACTGCTTGGTCATCAGGTCATGGTCCGCTGGTCACTCCATCACTAAATGAACAGTAC-TG
TATGGGCAAACAGATGCCACTCACTCAGCGCTTACACTGTTGTTGATGTGGATGGCCAGCTAAGCCAATTAAGAGCCCAT
TCAAGACCGAACATAATCCTGTCGAGCCATTCATTATAAACCTGTACCGTTGGCGCGCGTGGACCTTCAATGCCCGTGAC
CGTCATGACTCTGAAGCTTCGTCTCTCCGTCGCGTGATGGAGCTATGCTTTAGGATTTCGTAGTCCACAGGAGATGCTTT
AGGATTTCGTAGTCCACAGGAGATACACGCACAGTGGCTTTGCAACCAAAGCAAACACTGGCGTGGTTTCTCAACATCAA
AATATGAACTTTCACAGCTCTCACCGTTCAT-------------------------------------------------
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>SNPs
-------------S---------------------------S--------------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------------------------S----------------
--------S-----------------------------------------------------------------------
---------S--------S----S--------------------S-----------------------------------
-----------------------------S-----------------S--------S------------------S----
-----------S-----------S---------------------S-------------------------------S--
----------------------------------------------------------S---------------------
------------S------------------------------------S------------------------------
----------------------S-----------S--------------------------------S-S------S---
----------S------S-S------------------------------------------------------------
--------------------S----------------------------------------------------S---SS-
----S------------S-----S--------------------------------------------------------
-----------S--------------------------------------------------------------------
----------------S--SS------S-S-----------------------------------------------S--
--------------------------------------------------------------------------------
---------S------------S------------------------------------S-----------------S--
--------S----------------------------------S-------------S---------------S------
-------------------------------S--------------------------S---------------------
------------------------------------S---S------S--------S-----------------------
-------------------------------------------------S---------------------------S--
--------------------------S-----------------------------------------------------
---------S----------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------S---------S------------S------------------------------
--------------S-------S-----------------S----------SS---------------------------
----S-----S--S--S-S---S----------S-----------------------------S--S-------------
--------S--------S------------------S------------------S-------------------S----
-------S-SSSSS---------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_959
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----------------------------------------------------------ACCACATCACACACTCCCATC-
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>reverse_2027
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--------------------------CCGCACAGTGACTTTGCAAC----------------------------------
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