Multiple sequence alignment - TraesCS1B01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G185100 chr1B 100.000 2326 0 0 1 2326 332090601 332092926 0.000000e+00 4296.0
1 TraesCS1B01G185100 chr1B 89.520 563 39 11 1777 2326 337942010 337941455 0.000000e+00 695.0
2 TraesCS1B01G185100 chr1B 91.463 82 6 1 1946 2027 345320529 345320609 6.790000e-21 111.0
3 TraesCS1B01G185100 chr1A 96.198 1578 45 7 751 2326 306684891 306683327 0.000000e+00 2567.0
4 TraesCS1B01G185100 chr1A 90.123 324 26 4 222 544 307029815 307029497 1.290000e-112 416.0
5 TraesCS1B01G185100 chr1A 92.683 82 5 1 1946 2027 335028624 335028704 1.460000e-22 117.0
6 TraesCS1B01G185100 chr1A 89.024 82 8 1 1946 2027 335028465 335028545 1.470000e-17 100.0
7 TraesCS1B01G185100 chr1D 97.664 899 20 1 1428 2326 246003984 246003087 0.000000e+00 1543.0
8 TraesCS1B01G185100 chr1D 94.699 698 29 6 732 1429 246004710 246004021 0.000000e+00 1077.0
9 TraesCS1B01G185100 chr1D 93.985 133 8 0 412 544 246004881 246004749 3.920000e-48 202.0
10 TraesCS1B01G185100 chr1D 92.683 82 5 1 1946 2027 267794565 267794485 1.460000e-22 117.0
11 TraesCS1B01G185100 chr7D 99.435 177 0 1 562 737 87366531 87366355 1.040000e-83 320.0
12 TraesCS1B01G185100 chr3A 100.000 167 0 0 566 732 655726605 655726771 2.240000e-80 309.0
13 TraesCS1B01G185100 chr3A 82.623 305 31 16 1019 1316 46837877 46837588 1.380000e-62 250.0
14 TraesCS1B01G185100 chr3A 90.643 171 15 1 566 735 37458055 37457885 2.330000e-55 226.0
15 TraesCS1B01G185100 chr7B 98.844 173 1 1 564 735 680125158 680125330 8.070000e-80 307.0
16 TraesCS1B01G185100 chr7B 88.950 181 18 2 558 737 715570896 715571075 3.010000e-54 222.0
17 TraesCS1B01G185100 chr7B 86.111 144 18 2 60 203 198966016 198966157 1.110000e-33 154.0
18 TraesCS1B01G185100 chr7B 92.500 80 6 0 732 811 708505508 708505429 5.250000e-22 115.0
19 TraesCS1B01G185100 chr5B 96.732 153 3 2 54 206 622890886 622890736 1.070000e-63 254.0
20 TraesCS1B01G185100 chr5B 91.429 175 12 3 563 736 331656652 331656480 1.070000e-58 237.0
21 TraesCS1B01G185100 chr5B 93.243 148 9 1 56 203 643653779 643653925 1.400000e-52 217.0
22 TraesCS1B01G185100 chr3D 81.707 328 32 17 1003 1319 36171709 36171399 4.960000e-62 248.0
23 TraesCS1B01G185100 chr3D 95.946 148 4 2 56 203 71972752 71972897 2.990000e-59 239.0
24 TraesCS1B01G185100 chr3D 80.412 291 37 13 1019 1303 36018275 36017999 1.090000e-48 204.0
25 TraesCS1B01G185100 chr3B 81.288 326 39 16 1003 1319 59040204 59039892 6.420000e-61 244.0
26 TraesCS1B01G185100 chr3B 90.533 169 14 2 566 734 690563035 690562869 3.010000e-54 222.0
27 TraesCS1B01G185100 chr6A 95.139 144 5 2 57 200 327762684 327762543 2.330000e-55 226.0
28 TraesCS1B01G185100 chr6A 87.952 83 7 2 1946 2028 268970399 268970320 6.840000e-16 95.3
29 TraesCS1B01G185100 chr4B 94.000 150 7 2 57 206 648363593 648363446 2.330000e-55 226.0
30 TraesCS1B01G185100 chr4A 90.419 167 16 0 567 733 340701726 340701560 1.080000e-53 220.0
31 TraesCS1B01G185100 chr5A 89.595 173 15 3 562 732 679782084 679782255 1.400000e-52 217.0
32 TraesCS1B01G185100 chr5A 90.698 86 5 2 732 814 625711408 625711323 6.790000e-21 111.0
33 TraesCS1B01G185100 chr4D 91.216 148 9 3 59 206 196185327 196185184 5.070000e-47 198.0
34 TraesCS1B01G185100 chr2B 89.933 149 7 2 55 203 13911112 13911252 3.950000e-43 185.0
35 TraesCS1B01G185100 chrUn 86.429 140 16 3 55 193 479630891 479631028 1.440000e-32 150.0
36 TraesCS1B01G185100 chr6B 89.412 85 8 1 1946 2030 642971434 642971351 3.160000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G185100 chr1B 332090601 332092926 2325 False 4296.000000 4296 100.000000 1 2326 1 chr1B.!!$F1 2325
1 TraesCS1B01G185100 chr1B 337941455 337942010 555 True 695.000000 695 89.520000 1777 2326 1 chr1B.!!$R1 549
2 TraesCS1B01G185100 chr1A 306683327 306684891 1564 True 2567.000000 2567 96.198000 751 2326 1 chr1A.!!$R1 1575
3 TraesCS1B01G185100 chr1D 246003087 246004881 1794 True 940.666667 1543 95.449333 412 2326 3 chr1D.!!$R2 1914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.179134 CCGTCCTTGATCCTCGTGAC 60.179 60.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1395 1.145738 AGTGGGTGAAGGTGAATTGCT 59.854 47.619 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.579666 TTCCTAGGAATTATCATTGCATGC 57.420 37.500 20.72 11.82 33.19 4.06
33 34 5.884322 TCCTAGGAATTATCATTGCATGCT 58.116 37.500 20.33 0.00 33.19 3.79
34 35 7.019656 TCCTAGGAATTATCATTGCATGCTA 57.980 36.000 20.33 12.49 33.19 3.49
35 36 7.460910 TCCTAGGAATTATCATTGCATGCTAA 58.539 34.615 20.33 11.86 33.19 3.09
36 37 7.944000 TCCTAGGAATTATCATTGCATGCTAAA 59.056 33.333 20.33 6.03 33.19 1.85
37 38 8.579006 CCTAGGAATTATCATTGCATGCTAAAA 58.421 33.333 20.33 5.20 33.19 1.52
38 39 9.970395 CTAGGAATTATCATTGCATGCTAAAAA 57.030 29.630 20.33 4.79 33.19 1.94
56 57 1.265236 AAAAATTGCCATCCTCGCCA 58.735 45.000 0.00 0.00 0.00 5.69
57 58 0.819582 AAAATTGCCATCCTCGCCAG 59.180 50.000 0.00 0.00 0.00 4.85
58 59 1.039233 AAATTGCCATCCTCGCCAGG 61.039 55.000 0.00 0.00 42.01 4.45
59 60 2.916527 AATTGCCATCCTCGCCAGGG 62.917 60.000 0.00 0.00 40.80 4.45
61 62 4.554036 GCCATCCTCGCCAGGGAC 62.554 72.222 0.00 0.00 40.80 4.46
62 63 4.227134 CCATCCTCGCCAGGGACG 62.227 72.222 0.00 0.00 40.80 4.79
63 64 3.147595 CATCCTCGCCAGGGACGA 61.148 66.667 0.00 5.11 40.80 4.20
64 65 2.363795 ATCCTCGCCAGGGACGAA 60.364 61.111 0.00 0.00 40.80 3.85
65 66 2.427245 ATCCTCGCCAGGGACGAAG 61.427 63.158 0.00 1.80 40.80 3.79
66 67 4.821589 CCTCGCCAGGGACGAAGC 62.822 72.222 0.00 0.00 39.39 3.86
67 68 3.764466 CTCGCCAGGGACGAAGCT 61.764 66.667 0.00 0.00 39.39 3.74
68 69 2.361992 TCGCCAGGGACGAAGCTA 60.362 61.111 0.00 0.00 36.44 3.32
69 70 2.105128 CGCCAGGGACGAAGCTAG 59.895 66.667 0.00 0.00 0.00 3.42
70 71 2.415608 CGCCAGGGACGAAGCTAGA 61.416 63.158 0.00 0.00 0.00 2.43
71 72 1.898154 GCCAGGGACGAAGCTAGAA 59.102 57.895 0.00 0.00 0.00 2.10
72 73 0.249398 GCCAGGGACGAAGCTAGAAA 59.751 55.000 0.00 0.00 0.00 2.52
73 74 1.338769 GCCAGGGACGAAGCTAGAAAA 60.339 52.381 0.00 0.00 0.00 2.29
74 75 2.874457 GCCAGGGACGAAGCTAGAAAAA 60.874 50.000 0.00 0.00 0.00 1.94
95 96 5.628797 AAAAAGTTCAATGGGGTCAATGT 57.371 34.783 0.00 0.00 0.00 2.71
96 97 4.871933 AAAGTTCAATGGGGTCAATGTC 57.128 40.909 0.00 0.00 0.00 3.06
97 98 3.814504 AGTTCAATGGGGTCAATGTCT 57.185 42.857 0.00 0.00 0.00 3.41
98 99 4.927267 AGTTCAATGGGGTCAATGTCTA 57.073 40.909 0.00 0.00 0.00 2.59
99 100 5.456921 AGTTCAATGGGGTCAATGTCTAT 57.543 39.130 0.00 0.00 0.00 1.98
100 101 5.195940 AGTTCAATGGGGTCAATGTCTATG 58.804 41.667 0.00 0.00 0.00 2.23
101 102 5.044919 AGTTCAATGGGGTCAATGTCTATGA 60.045 40.000 0.00 0.00 0.00 2.15
102 103 4.780815 TCAATGGGGTCAATGTCTATGAC 58.219 43.478 0.00 0.00 45.08 3.06
104 105 3.912496 TGGGGTCAATGTCTATGACAG 57.088 47.619 8.71 0.00 46.04 3.51
105 106 3.181329 TGGGGTCAATGTCTATGACAGT 58.819 45.455 8.71 0.82 46.04 3.55
111 112 3.914426 AATGTCTATGACAGTGGGGTC 57.086 47.619 6.55 0.00 46.04 4.46
118 119 2.030027 TGACAGTGGGGTCATCTTCT 57.970 50.000 0.00 0.00 42.56 2.85
119 120 3.184382 TGACAGTGGGGTCATCTTCTA 57.816 47.619 0.00 0.00 42.56 2.10
120 121 3.724478 TGACAGTGGGGTCATCTTCTAT 58.276 45.455 0.00 0.00 42.56 1.98
121 122 4.104086 TGACAGTGGGGTCATCTTCTATT 58.896 43.478 0.00 0.00 42.56 1.73
122 123 5.277250 TGACAGTGGGGTCATCTTCTATTA 58.723 41.667 0.00 0.00 42.56 0.98
123 124 5.724370 TGACAGTGGGGTCATCTTCTATTAA 59.276 40.000 0.00 0.00 42.56 1.40
124 125 6.386927 TGACAGTGGGGTCATCTTCTATTAAT 59.613 38.462 0.00 0.00 42.56 1.40
125 126 6.595682 ACAGTGGGGTCATCTTCTATTAATG 58.404 40.000 0.00 0.00 0.00 1.90
126 127 6.386927 ACAGTGGGGTCATCTTCTATTAATGA 59.613 38.462 0.00 0.00 0.00 2.57
127 128 7.092444 ACAGTGGGGTCATCTTCTATTAATGAA 60.092 37.037 0.00 0.00 31.61 2.57
128 129 7.941238 CAGTGGGGTCATCTTCTATTAATGAAT 59.059 37.037 0.00 0.00 31.61 2.57
129 130 9.170890 AGTGGGGTCATCTTCTATTAATGAATA 57.829 33.333 0.00 0.00 31.61 1.75
130 131 9.442047 GTGGGGTCATCTTCTATTAATGAATAG 57.558 37.037 3.60 3.60 44.14 1.73
131 132 9.170890 TGGGGTCATCTTCTATTAATGAATAGT 57.829 33.333 9.31 0.00 43.50 2.12
132 133 9.442047 GGGGTCATCTTCTATTAATGAATAGTG 57.558 37.037 9.31 1.78 43.50 2.74
155 156 8.035984 AGTGATTAGTACTTAGTTTCTGAAGGC 58.964 37.037 0.00 0.00 0.00 4.35
156 157 8.035984 GTGATTAGTACTTAGTTTCTGAAGGCT 58.964 37.037 0.00 0.00 0.00 4.58
157 158 8.594550 TGATTAGTACTTAGTTTCTGAAGGCTT 58.405 33.333 0.00 0.00 0.00 4.35
158 159 9.438228 GATTAGTACTTAGTTTCTGAAGGCTTT 57.562 33.333 0.00 0.00 0.00 3.51
159 160 8.603242 TTAGTACTTAGTTTCTGAAGGCTTTG 57.397 34.615 0.00 0.00 0.00 2.77
160 161 4.837896 ACTTAGTTTCTGAAGGCTTTGC 57.162 40.909 0.00 0.00 0.00 3.68
161 162 4.464947 ACTTAGTTTCTGAAGGCTTTGCT 58.535 39.130 0.00 0.00 0.00 3.91
162 163 4.276926 ACTTAGTTTCTGAAGGCTTTGCTG 59.723 41.667 0.00 0.00 0.00 4.41
163 164 2.936202 AGTTTCTGAAGGCTTTGCTGA 58.064 42.857 0.00 0.00 0.00 4.26
164 165 3.494332 AGTTTCTGAAGGCTTTGCTGAT 58.506 40.909 0.00 0.00 0.00 2.90
165 166 3.893813 AGTTTCTGAAGGCTTTGCTGATT 59.106 39.130 0.00 0.00 0.00 2.57
166 167 4.343239 AGTTTCTGAAGGCTTTGCTGATTT 59.657 37.500 0.00 0.00 0.00 2.17
167 168 4.510038 TTCTGAAGGCTTTGCTGATTTC 57.490 40.909 0.00 0.00 0.00 2.17
168 169 3.489355 TCTGAAGGCTTTGCTGATTTCA 58.511 40.909 0.00 0.00 0.00 2.69
169 170 4.084287 TCTGAAGGCTTTGCTGATTTCAT 58.916 39.130 0.00 0.00 0.00 2.57
170 171 4.525487 TCTGAAGGCTTTGCTGATTTCATT 59.475 37.500 0.00 0.00 0.00 2.57
171 172 4.562082 TGAAGGCTTTGCTGATTTCATTG 58.438 39.130 0.00 0.00 0.00 2.82
172 173 3.604875 AGGCTTTGCTGATTTCATTGG 57.395 42.857 0.00 0.00 0.00 3.16
173 174 2.235402 AGGCTTTGCTGATTTCATTGGG 59.765 45.455 0.00 0.00 0.00 4.12
174 175 2.624636 GCTTTGCTGATTTCATTGGGG 58.375 47.619 0.00 0.00 0.00 4.96
175 176 2.027837 GCTTTGCTGATTTCATTGGGGT 60.028 45.455 0.00 0.00 0.00 4.95
176 177 3.853475 CTTTGCTGATTTCATTGGGGTC 58.147 45.455 0.00 0.00 0.00 4.46
177 178 2.601240 TGCTGATTTCATTGGGGTCA 57.399 45.000 0.00 0.00 0.00 4.02
178 179 2.886913 TGCTGATTTCATTGGGGTCAA 58.113 42.857 0.00 0.00 37.28 3.18
179 180 3.443052 TGCTGATTTCATTGGGGTCAAT 58.557 40.909 0.00 0.00 43.79 2.57
180 181 3.839490 TGCTGATTTCATTGGGGTCAATT 59.161 39.130 0.00 0.00 41.29 2.32
181 182 4.186159 GCTGATTTCATTGGGGTCAATTG 58.814 43.478 0.00 0.00 41.29 2.32
182 183 4.081531 GCTGATTTCATTGGGGTCAATTGA 60.082 41.667 3.38 3.38 41.29 2.57
183 184 5.404466 TGATTTCATTGGGGTCAATTGAC 57.596 39.130 27.16 27.16 41.29 3.18
195 196 4.983671 GTCAATTGACCCCAATCCTTAC 57.016 45.455 25.26 0.00 41.84 2.34
196 197 4.340617 GTCAATTGACCCCAATCCTTACA 58.659 43.478 25.26 0.00 41.84 2.41
197 198 4.770010 GTCAATTGACCCCAATCCTTACAA 59.230 41.667 25.26 0.00 41.84 2.41
198 199 5.016173 TCAATTGACCCCAATCCTTACAAG 58.984 41.667 3.38 0.00 41.84 3.16
199 200 3.981212 ATTGACCCCAATCCTTACAAGG 58.019 45.455 1.26 1.26 38.57 3.61
200 201 1.005450 TGACCCCAATCCTTACAAGGC 59.995 52.381 2.93 0.00 46.06 4.35
201 202 1.005450 GACCCCAATCCTTACAAGGCA 59.995 52.381 2.93 0.00 46.06 4.75
202 203 1.005924 ACCCCAATCCTTACAAGGCAG 59.994 52.381 2.93 0.00 46.06 4.85
203 204 1.284785 CCCCAATCCTTACAAGGCAGA 59.715 52.381 2.93 0.00 46.06 4.26
204 205 2.091665 CCCCAATCCTTACAAGGCAGAT 60.092 50.000 2.93 0.00 46.06 2.90
205 206 3.217626 CCCAATCCTTACAAGGCAGATC 58.782 50.000 2.93 0.00 46.06 2.75
206 207 3.371917 CCCAATCCTTACAAGGCAGATCA 60.372 47.826 2.93 0.00 46.06 2.92
207 208 3.881688 CCAATCCTTACAAGGCAGATCAG 59.118 47.826 2.93 0.00 46.06 2.90
208 209 3.853355 ATCCTTACAAGGCAGATCAGG 57.147 47.619 2.93 0.00 46.06 3.86
209 210 1.839994 TCCTTACAAGGCAGATCAGGG 59.160 52.381 2.93 0.00 46.06 4.45
210 211 1.839994 CCTTACAAGGCAGATCAGGGA 59.160 52.381 0.00 0.00 39.76 4.20
211 212 2.441001 CCTTACAAGGCAGATCAGGGAT 59.559 50.000 0.00 0.00 39.76 3.85
212 213 3.495806 CCTTACAAGGCAGATCAGGGATC 60.496 52.174 0.00 0.00 39.76 3.36
213 214 0.842635 ACAAGGCAGATCAGGGATCC 59.157 55.000 1.92 1.92 39.66 3.36
214 215 0.250209 CAAGGCAGATCAGGGATCCG 60.250 60.000 5.45 0.00 39.66 4.18
215 216 0.692419 AAGGCAGATCAGGGATCCGT 60.692 55.000 5.45 2.61 39.66 4.69
216 217 1.118356 AGGCAGATCAGGGATCCGTC 61.118 60.000 3.34 0.52 39.66 4.79
217 218 1.369321 GCAGATCAGGGATCCGTCC 59.631 63.158 3.34 0.00 39.66 4.79
218 219 1.118356 GCAGATCAGGGATCCGTCCT 61.118 60.000 3.34 0.00 44.44 3.85
219 220 1.418334 CAGATCAGGGATCCGTCCTT 58.582 55.000 3.34 0.00 44.44 3.36
227 228 3.875838 GATCCGTCCTTGATCCTCG 57.124 57.895 0.00 0.00 33.94 4.63
228 229 1.033574 GATCCGTCCTTGATCCTCGT 58.966 55.000 0.00 0.00 33.94 4.18
229 230 0.747255 ATCCGTCCTTGATCCTCGTG 59.253 55.000 0.00 0.00 0.00 4.35
230 231 0.323087 TCCGTCCTTGATCCTCGTGA 60.323 55.000 0.00 0.00 0.00 4.35
231 232 0.179134 CCGTCCTTGATCCTCGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
232 233 0.526211 CGTCCTTGATCCTCGTGACA 59.474 55.000 0.00 0.00 0.00 3.58
233 234 1.468224 CGTCCTTGATCCTCGTGACAG 60.468 57.143 0.00 0.00 0.00 3.51
234 235 0.532573 TCCTTGATCCTCGTGACAGC 59.467 55.000 0.00 0.00 0.00 4.40
235 236 0.247460 CCTTGATCCTCGTGACAGCA 59.753 55.000 0.00 0.00 0.00 4.41
236 237 1.338105 CCTTGATCCTCGTGACAGCAA 60.338 52.381 0.00 0.00 0.00 3.91
237 238 2.416747 CTTGATCCTCGTGACAGCAAA 58.583 47.619 0.00 0.00 0.00 3.68
238 239 2.084610 TGATCCTCGTGACAGCAAAG 57.915 50.000 0.00 0.00 0.00 2.77
239 240 1.344438 TGATCCTCGTGACAGCAAAGT 59.656 47.619 0.00 0.00 0.00 2.66
240 241 2.224281 TGATCCTCGTGACAGCAAAGTT 60.224 45.455 0.00 0.00 0.00 2.66
241 242 2.325583 TCCTCGTGACAGCAAAGTTT 57.674 45.000 0.00 0.00 0.00 2.66
242 243 1.939934 TCCTCGTGACAGCAAAGTTTG 59.060 47.619 11.41 11.41 0.00 2.93
302 303 9.838339 AATCATTAGAAAACGGATGAGATAACT 57.162 29.630 0.00 0.00 32.59 2.24
303 304 8.873215 TCATTAGAAAACGGATGAGATAACTC 57.127 34.615 0.00 0.00 42.88 3.01
304 305 8.696374 TCATTAGAAAACGGATGAGATAACTCT 58.304 33.333 1.39 0.00 42.99 3.24
305 306 8.759641 CATTAGAAAACGGATGAGATAACTCTG 58.240 37.037 1.39 0.00 42.99 3.35
306 307 6.531503 AGAAAACGGATGAGATAACTCTGA 57.468 37.500 1.39 0.00 42.99 3.27
307 308 6.936279 AGAAAACGGATGAGATAACTCTGAA 58.064 36.000 1.39 0.00 42.99 3.02
308 309 7.560368 AGAAAACGGATGAGATAACTCTGAAT 58.440 34.615 1.39 0.00 42.99 2.57
309 310 7.708752 AGAAAACGGATGAGATAACTCTGAATC 59.291 37.037 1.39 0.00 42.99 2.52
310 311 6.723298 AACGGATGAGATAACTCTGAATCT 57.277 37.500 1.39 0.00 42.99 2.40
311 312 7.825331 AACGGATGAGATAACTCTGAATCTA 57.175 36.000 1.39 0.00 42.99 1.98
312 313 7.825331 ACGGATGAGATAACTCTGAATCTAA 57.175 36.000 1.39 0.00 42.99 2.10
313 314 8.415950 ACGGATGAGATAACTCTGAATCTAAT 57.584 34.615 1.39 0.00 42.99 1.73
314 315 8.865090 ACGGATGAGATAACTCTGAATCTAATT 58.135 33.333 1.39 0.00 42.99 1.40
315 316 9.703892 CGGATGAGATAACTCTGAATCTAATTT 57.296 33.333 1.39 0.00 42.99 1.82
323 324 7.602517 AACTCTGAATCTAATTTGAACGAGG 57.397 36.000 0.00 0.00 0.00 4.63
324 325 6.109359 ACTCTGAATCTAATTTGAACGAGGG 58.891 40.000 0.00 0.00 0.00 4.30
325 326 6.049955 TCTGAATCTAATTTGAACGAGGGT 57.950 37.500 0.00 0.00 0.00 4.34
326 327 6.472887 TCTGAATCTAATTTGAACGAGGGTT 58.527 36.000 0.00 0.00 39.63 4.11
327 328 7.617225 TCTGAATCTAATTTGAACGAGGGTTA 58.383 34.615 0.00 0.00 36.24 2.85
328 329 8.265055 TCTGAATCTAATTTGAACGAGGGTTAT 58.735 33.333 0.00 0.00 36.24 1.89
329 330 8.801882 TGAATCTAATTTGAACGAGGGTTATT 57.198 30.769 0.00 0.00 36.24 1.40
330 331 9.238368 TGAATCTAATTTGAACGAGGGTTATTT 57.762 29.630 0.00 0.00 36.24 1.40
359 360 8.859236 ATCCAATCTATGAATGTATTGACAGG 57.141 34.615 0.00 0.00 39.50 4.00
360 361 7.805163 TCCAATCTATGAATGTATTGACAGGT 58.195 34.615 0.00 0.00 39.50 4.00
361 362 8.933653 TCCAATCTATGAATGTATTGACAGGTA 58.066 33.333 0.00 0.00 39.50 3.08
362 363 9.212641 CCAATCTATGAATGTATTGACAGGTAG 57.787 37.037 0.00 0.00 39.50 3.18
363 364 9.770097 CAATCTATGAATGTATTGACAGGTAGT 57.230 33.333 0.00 0.00 39.50 2.73
377 378 8.777578 TTGACAGGTAGTATATGATTAGGTGT 57.222 34.615 0.00 0.00 0.00 4.16
378 379 8.178313 TGACAGGTAGTATATGATTAGGTGTG 57.822 38.462 0.00 0.00 0.00 3.82
379 380 7.232737 TGACAGGTAGTATATGATTAGGTGTGG 59.767 40.741 0.00 0.00 0.00 4.17
380 381 7.302948 ACAGGTAGTATATGATTAGGTGTGGA 58.697 38.462 0.00 0.00 0.00 4.02
381 382 7.956315 ACAGGTAGTATATGATTAGGTGTGGAT 59.044 37.037 0.00 0.00 0.00 3.41
382 383 8.253810 CAGGTAGTATATGATTAGGTGTGGATG 58.746 40.741 0.00 0.00 0.00 3.51
383 384 7.956315 AGGTAGTATATGATTAGGTGTGGATGT 59.044 37.037 0.00 0.00 0.00 3.06
384 385 8.035394 GGTAGTATATGATTAGGTGTGGATGTG 58.965 40.741 0.00 0.00 0.00 3.21
385 386 7.855784 AGTATATGATTAGGTGTGGATGTGA 57.144 36.000 0.00 0.00 0.00 3.58
386 387 8.441311 AGTATATGATTAGGTGTGGATGTGAT 57.559 34.615 0.00 0.00 0.00 3.06
387 388 8.884323 AGTATATGATTAGGTGTGGATGTGATT 58.116 33.333 0.00 0.00 0.00 2.57
388 389 9.507329 GTATATGATTAGGTGTGGATGTGATTT 57.493 33.333 0.00 0.00 0.00 2.17
389 390 6.704289 ATGATTAGGTGTGGATGTGATTTG 57.296 37.500 0.00 0.00 0.00 2.32
390 391 5.814481 TGATTAGGTGTGGATGTGATTTGA 58.186 37.500 0.00 0.00 0.00 2.69
391 392 6.425735 TGATTAGGTGTGGATGTGATTTGAT 58.574 36.000 0.00 0.00 0.00 2.57
392 393 6.543465 TGATTAGGTGTGGATGTGATTTGATC 59.457 38.462 0.00 0.00 0.00 2.92
393 394 4.305539 AGGTGTGGATGTGATTTGATCA 57.694 40.909 0.00 0.00 36.84 2.92
394 395 4.267536 AGGTGTGGATGTGATTTGATCAG 58.732 43.478 0.00 0.00 40.53 2.90
395 396 3.181493 GGTGTGGATGTGATTTGATCAGC 60.181 47.826 0.00 0.00 40.53 4.26
396 397 3.441222 GTGTGGATGTGATTTGATCAGCA 59.559 43.478 0.00 0.00 40.53 4.41
397 398 3.441222 TGTGGATGTGATTTGATCAGCAC 59.559 43.478 14.76 14.76 40.53 4.40
398 399 3.441222 GTGGATGTGATTTGATCAGCACA 59.559 43.478 22.14 22.14 44.31 4.57
399 400 3.441222 TGGATGTGATTTGATCAGCACAC 59.559 43.478 22.27 19.10 43.17 3.82
400 401 3.441222 GGATGTGATTTGATCAGCACACA 59.559 43.478 22.27 22.59 43.17 3.72
401 402 4.082625 GGATGTGATTTGATCAGCACACAA 60.083 41.667 23.77 13.83 43.17 3.33
402 403 5.393787 GGATGTGATTTGATCAGCACACAAT 60.394 40.000 23.77 16.41 43.17 2.71
403 404 5.456548 TGTGATTTGATCAGCACACAATT 57.543 34.783 20.34 0.00 40.53 2.32
404 405 5.845103 TGTGATTTGATCAGCACACAATTT 58.155 33.333 20.34 0.00 40.53 1.82
405 406 5.692654 TGTGATTTGATCAGCACACAATTTG 59.307 36.000 20.34 0.00 40.53 2.32
406 407 5.921976 GTGATTTGATCAGCACACAATTTGA 59.078 36.000 16.04 0.00 40.53 2.69
407 408 6.421501 GTGATTTGATCAGCACACAATTTGAA 59.578 34.615 16.04 0.00 40.53 2.69
408 409 7.117236 GTGATTTGATCAGCACACAATTTGAAT 59.883 33.333 16.04 1.55 40.53 2.57
409 410 7.329962 TGATTTGATCAGCACACAATTTGAATC 59.670 33.333 2.79 0.00 33.59 2.52
410 411 5.063180 TGATCAGCACACAATTTGAATCC 57.937 39.130 2.79 0.00 0.00 3.01
429 430 6.095300 TGAATCCTATTCGTTTACGGTCTACA 59.905 38.462 2.09 0.00 40.29 2.74
431 432 7.750229 ATCCTATTCGTTTACGGTCTACATA 57.250 36.000 2.09 0.00 40.29 2.29
433 434 6.017109 TCCTATTCGTTTACGGTCTACATACC 60.017 42.308 2.09 0.00 40.29 2.73
441 442 1.618487 GGTCTACATACCCTCTCCCG 58.382 60.000 0.00 0.00 33.02 5.14
453 454 0.813210 CTCTCCCGCAAGCAATCTCC 60.813 60.000 0.00 0.00 0.00 3.71
544 545 1.742761 CTGGCCACAAGGTCACATAG 58.257 55.000 0.00 0.00 46.77 2.23
546 547 2.236146 CTGGCCACAAGGTCACATAGTA 59.764 50.000 0.00 0.00 46.77 1.82
547 548 2.027561 TGGCCACAAGGTCACATAGTAC 60.028 50.000 0.00 0.00 46.77 2.73
548 549 2.027561 GGCCACAAGGTCACATAGTACA 60.028 50.000 0.00 0.00 40.10 2.90
549 550 3.262420 GCCACAAGGTCACATAGTACAG 58.738 50.000 0.00 0.00 37.19 2.74
550 551 3.262420 CCACAAGGTCACATAGTACAGC 58.738 50.000 0.00 0.00 0.00 4.40
552 553 3.679980 CACAAGGTCACATAGTACAGCAC 59.320 47.826 0.00 0.00 0.00 4.40
554 555 3.876274 AGGTCACATAGTACAGCACAG 57.124 47.619 0.00 0.00 0.00 3.66
555 556 2.497675 AGGTCACATAGTACAGCACAGG 59.502 50.000 0.00 0.00 0.00 4.00
556 557 2.271800 GTCACATAGTACAGCACAGGC 58.728 52.381 0.00 0.00 41.61 4.85
567 568 3.716195 CACAGGCGGTGGGGATCA 61.716 66.667 10.09 0.00 44.04 2.92
568 569 3.402681 ACAGGCGGTGGGGATCAG 61.403 66.667 0.00 0.00 0.00 2.90
570 571 3.402681 AGGCGGTGGGGATCAGTG 61.403 66.667 0.00 0.00 0.00 3.66
571 572 4.489771 GGCGGTGGGGATCAGTGG 62.490 72.222 0.00 0.00 0.00 4.00
573 574 4.838152 CGGTGGGGATCAGTGGCG 62.838 72.222 0.00 0.00 0.00 5.69
574 575 3.717294 GGTGGGGATCAGTGGCGT 61.717 66.667 0.00 0.00 0.00 5.68
575 576 2.363975 GGTGGGGATCAGTGGCGTA 61.364 63.158 0.00 0.00 0.00 4.42
576 577 1.144057 GTGGGGATCAGTGGCGTAG 59.856 63.158 0.00 0.00 0.00 3.51
589 590 3.547513 CGTAGCTAGGGGGTGGCC 61.548 72.222 5.50 0.00 31.44 5.36
590 591 2.366435 GTAGCTAGGGGGTGGCCA 60.366 66.667 0.00 0.00 31.44 5.36
591 592 2.040884 TAGCTAGGGGGTGGCCAG 60.041 66.667 5.11 0.00 31.44 4.85
592 593 3.714078 TAGCTAGGGGGTGGCCAGG 62.714 68.421 5.11 0.00 31.44 4.45
594 595 4.760220 CTAGGGGGTGGCCAGGGT 62.760 72.222 5.11 0.00 0.00 4.34
613 614 4.016706 GTCCGTGGACCACCCTGG 62.017 72.222 19.11 14.18 45.02 4.45
614 615 4.242586 TCCGTGGACCACCCTGGA 62.243 66.667 19.11 16.25 40.96 3.86
615 616 3.246112 CCGTGGACCACCCTGGAA 61.246 66.667 19.11 0.00 40.96 3.53
616 617 2.602676 CCGTGGACCACCCTGGAAT 61.603 63.158 19.11 0.00 40.96 3.01
617 618 1.378762 CGTGGACCACCCTGGAATT 59.621 57.895 19.11 0.00 40.96 2.17
618 619 0.251165 CGTGGACCACCCTGGAATTT 60.251 55.000 19.11 0.00 40.96 1.82
619 620 1.545841 GTGGACCACCCTGGAATTTC 58.454 55.000 14.16 0.00 40.96 2.17
620 621 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
621 622 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
622 623 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
623 624 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
624 625 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
625 626 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
626 627 2.023501 CCACCCTGGAATTTCCCCATAA 60.024 50.000 12.90 0.00 40.96 1.90
627 628 3.031013 CACCCTGGAATTTCCCCATAAC 58.969 50.000 12.90 0.00 35.03 1.89
628 629 2.933139 ACCCTGGAATTTCCCCATAACT 59.067 45.455 12.90 0.00 35.03 2.24
629 630 3.339742 ACCCTGGAATTTCCCCATAACTT 59.660 43.478 12.90 0.00 35.03 2.66
630 631 3.706086 CCCTGGAATTTCCCCATAACTTG 59.294 47.826 12.90 0.00 35.03 3.16
631 632 4.352893 CCTGGAATTTCCCCATAACTTGT 58.647 43.478 12.90 0.00 35.03 3.16
632 633 5.515106 CCTGGAATTTCCCCATAACTTGTA 58.485 41.667 12.90 0.00 35.03 2.41
633 634 6.136155 CCTGGAATTTCCCCATAACTTGTAT 58.864 40.000 12.90 0.00 35.03 2.29
634 635 7.294584 CCTGGAATTTCCCCATAACTTGTATA 58.705 38.462 12.90 0.00 35.03 1.47
635 636 7.950124 CCTGGAATTTCCCCATAACTTGTATAT 59.050 37.037 12.90 0.00 35.03 0.86
643 644 9.664777 TTCCCCATAACTTGTATATAGTGTAGT 57.335 33.333 0.00 0.00 0.00 2.73
704 705 9.883142 TTAAATATTTTCATCAATTGACCACCC 57.117 29.630 11.07 0.00 32.84 4.61
705 706 7.738437 AATATTTTCATCAATTGACCACCCT 57.262 32.000 11.07 0.00 32.84 4.34
706 707 4.870123 TTTTCATCAATTGACCACCCTG 57.130 40.909 11.07 4.15 32.84 4.45
707 708 2.512692 TCATCAATTGACCACCCTGG 57.487 50.000 11.07 0.00 45.02 4.45
708 709 1.991813 TCATCAATTGACCACCCTGGA 59.008 47.619 11.07 0.00 40.96 3.86
709 710 2.025981 TCATCAATTGACCACCCTGGAG 60.026 50.000 11.07 0.00 40.96 3.86
710 711 1.444933 TCAATTGACCACCCTGGAGT 58.555 50.000 3.38 0.00 40.96 3.85
711 712 2.626785 TCAATTGACCACCCTGGAGTA 58.373 47.619 3.38 0.00 40.96 2.59
712 713 3.189606 TCAATTGACCACCCTGGAGTAT 58.810 45.455 3.38 0.00 40.96 2.12
713 714 3.591527 TCAATTGACCACCCTGGAGTATT 59.408 43.478 3.38 0.00 40.96 1.89
714 715 3.652057 ATTGACCACCCTGGAGTATTG 57.348 47.619 0.00 0.00 40.96 1.90
715 716 1.285280 TGACCACCCTGGAGTATTGG 58.715 55.000 0.00 0.00 40.96 3.16
716 717 1.286248 GACCACCCTGGAGTATTGGT 58.714 55.000 0.00 0.00 40.96 3.67
717 718 1.286248 ACCACCCTGGAGTATTGGTC 58.714 55.000 0.00 0.00 40.96 4.02
718 719 1.203440 ACCACCCTGGAGTATTGGTCT 60.203 52.381 0.00 0.00 40.96 3.85
719 720 1.210478 CCACCCTGGAGTATTGGTCTG 59.790 57.143 0.00 0.00 40.96 3.51
720 721 1.210478 CACCCTGGAGTATTGGTCTGG 59.790 57.143 0.00 0.00 0.00 3.86
721 722 0.181350 CCCTGGAGTATTGGTCTGGC 59.819 60.000 0.00 0.00 0.00 4.85
722 723 1.207791 CCTGGAGTATTGGTCTGGCT 58.792 55.000 0.00 0.00 0.00 4.75
723 724 2.398588 CCTGGAGTATTGGTCTGGCTA 58.601 52.381 0.00 0.00 0.00 3.93
724 725 2.103263 CCTGGAGTATTGGTCTGGCTAC 59.897 54.545 0.00 0.00 0.00 3.58
725 726 1.754803 TGGAGTATTGGTCTGGCTACG 59.245 52.381 0.00 0.00 0.00 3.51
726 727 1.538419 GGAGTATTGGTCTGGCTACGC 60.538 57.143 0.00 0.00 0.00 4.42
767 768 3.368635 CCATTAGCTCCAATTGCAGCAAA 60.369 43.478 22.99 8.16 38.18 3.68
811 812 1.022735 ACGAGGAGCGAACGATACAT 58.977 50.000 0.00 0.00 44.57 2.29
814 815 3.227147 CGAGGAGCGAACGATACATAAG 58.773 50.000 0.00 0.00 44.57 1.73
977 978 2.416893 GCACAGAACGAGATTCCTTTCC 59.583 50.000 0.00 0.00 38.16 3.13
1081 1082 3.220999 CTGGCCGTCACCTTCGTCA 62.221 63.158 0.00 0.00 0.00 4.35
1095 1096 5.407691 CACCTTCGTCATATCATTCATCCTG 59.592 44.000 0.00 0.00 0.00 3.86
1105 1106 1.863454 CATTCATCCTGCTGAGTACGC 59.137 52.381 0.00 0.00 0.00 4.42
1156 1157 3.443054 TTTAATTTCGGCTCGTTCGTG 57.557 42.857 0.00 0.00 0.00 4.35
1173 1174 0.582005 GTGTTGGTCAACTGACGAGC 59.418 55.000 13.96 3.12 45.65 5.03
1356 1357 2.026169 CCTCCCCAAGTCTCCTTTTACC 60.026 54.545 0.00 0.00 0.00 2.85
1386 1387 1.689984 TTTGGATGTGCTGCTGTTGA 58.310 45.000 0.00 0.00 0.00 3.18
1394 1395 0.464193 TGCTGCTGTTGAGTTCTGCA 60.464 50.000 0.00 0.00 37.92 4.41
1493 1531 6.634436 GGATAGCTTTATTTTGATGTTCGCAG 59.366 38.462 0.00 0.00 0.00 5.18
1619 1657 1.212751 GCATTGGTTGCGTCCTTCC 59.787 57.895 0.00 0.00 42.54 3.46
1693 1731 6.930722 ACTGTTAAATGCTTTGGAGAATTTGG 59.069 34.615 3.21 0.00 40.61 3.28
1816 1854 5.480073 AGCTGCATTAGAGGGATTAGAGTAG 59.520 44.000 1.02 0.00 0.00 2.57
1903 1941 9.471084 CCGTATTGTTTCAAAACTTTTTATCCT 57.529 29.630 7.12 0.00 39.59 3.24
1977 2029 1.235724 GCACCAACCAGTAGAACCAC 58.764 55.000 0.00 0.00 0.00 4.16
2237 2289 9.264719 TGATGTGTATATTCTAGCATTTGAGTG 57.735 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.205417 CTGGCGAGGATGGCAATTTTT 59.795 47.619 0.00 0.00 43.90 1.94
38 39 0.819582 CTGGCGAGGATGGCAATTTT 59.180 50.000 0.00 0.00 43.90 1.82
39 40 1.039233 CCTGGCGAGGATGGCAATTT 61.039 55.000 9.58 0.00 43.90 1.82
40 41 1.454479 CCTGGCGAGGATGGCAATT 60.454 57.895 9.58 0.00 43.90 2.32
41 42 2.194056 CCTGGCGAGGATGGCAAT 59.806 61.111 9.58 0.00 43.90 3.56
42 43 4.113815 CCCTGGCGAGGATGGCAA 62.114 66.667 17.59 0.00 43.90 4.52
44 45 4.554036 GTCCCTGGCGAGGATGGC 62.554 72.222 17.59 0.00 42.93 4.40
45 46 4.227134 CGTCCCTGGCGAGGATGG 62.227 72.222 17.59 0.00 42.93 3.51
46 47 2.635229 CTTCGTCCCTGGCGAGGATG 62.635 65.000 17.59 8.69 42.93 3.51
47 48 2.363795 TTCGTCCCTGGCGAGGAT 60.364 61.111 17.59 0.00 42.93 3.24
48 49 3.068691 CTTCGTCCCTGGCGAGGA 61.069 66.667 17.59 0.00 42.93 3.71
49 50 4.821589 GCTTCGTCCCTGGCGAGG 62.822 72.222 7.99 7.99 39.61 4.63
50 51 2.343163 CTAGCTTCGTCCCTGGCGAG 62.343 65.000 0.00 0.00 39.61 5.03
51 52 2.361992 TAGCTTCGTCCCTGGCGA 60.362 61.111 0.00 0.00 36.51 5.54
52 53 1.945354 TTCTAGCTTCGTCCCTGGCG 61.945 60.000 0.00 0.00 0.00 5.69
53 54 0.249398 TTTCTAGCTTCGTCCCTGGC 59.751 55.000 0.00 0.00 0.00 4.85
54 55 2.762535 TTTTCTAGCTTCGTCCCTGG 57.237 50.000 0.00 0.00 0.00 4.45
73 74 5.366477 AGACATTGACCCCATTGAACTTTTT 59.634 36.000 0.00 0.00 0.00 1.94
74 75 4.901250 AGACATTGACCCCATTGAACTTTT 59.099 37.500 0.00 0.00 0.00 2.27
75 76 4.482990 AGACATTGACCCCATTGAACTTT 58.517 39.130 0.00 0.00 0.00 2.66
76 77 4.118168 AGACATTGACCCCATTGAACTT 57.882 40.909 0.00 0.00 0.00 2.66
77 78 3.814504 AGACATTGACCCCATTGAACT 57.185 42.857 0.00 0.00 0.00 3.01
78 79 5.066505 GTCATAGACATTGACCCCATTGAAC 59.933 44.000 0.00 0.00 38.00 3.18
79 80 5.192927 GTCATAGACATTGACCCCATTGAA 58.807 41.667 0.00 0.00 38.00 2.69
80 81 4.227073 TGTCATAGACATTGACCCCATTGA 59.773 41.667 0.00 0.00 42.25 2.57
81 82 4.525996 TGTCATAGACATTGACCCCATTG 58.474 43.478 0.00 0.00 42.25 2.82
82 83 4.228210 ACTGTCATAGACATTGACCCCATT 59.772 41.667 0.00 0.00 41.94 3.16
83 84 3.782523 ACTGTCATAGACATTGACCCCAT 59.217 43.478 0.00 0.00 41.94 4.00
84 85 3.055167 CACTGTCATAGACATTGACCCCA 60.055 47.826 10.79 0.00 42.98 4.96
85 86 3.535561 CACTGTCATAGACATTGACCCC 58.464 50.000 10.79 0.00 42.98 4.95
86 87 3.535561 CCACTGTCATAGACATTGACCC 58.464 50.000 16.10 0.00 42.98 4.46
87 88 3.535561 CCCACTGTCATAGACATTGACC 58.464 50.000 16.10 0.00 42.98 4.02
88 89 3.055094 ACCCCACTGTCATAGACATTGAC 60.055 47.826 16.10 1.96 42.98 3.18
89 90 3.181329 ACCCCACTGTCATAGACATTGA 58.819 45.455 16.10 0.00 42.98 2.57
90 91 3.055167 TGACCCCACTGTCATAGACATTG 60.055 47.826 9.66 9.66 41.94 2.82
91 92 3.181329 TGACCCCACTGTCATAGACATT 58.819 45.455 0.00 0.00 41.94 2.71
92 93 2.832838 TGACCCCACTGTCATAGACAT 58.167 47.619 0.00 0.00 41.94 3.06
93 94 2.319025 TGACCCCACTGTCATAGACA 57.681 50.000 0.00 0.00 40.22 3.41
100 101 4.762289 AATAGAAGATGACCCCACTGTC 57.238 45.455 0.00 0.00 35.77 3.51
101 102 6.386927 TCATTAATAGAAGATGACCCCACTGT 59.613 38.462 0.00 0.00 0.00 3.55
102 103 6.830912 TCATTAATAGAAGATGACCCCACTG 58.169 40.000 0.00 0.00 0.00 3.66
103 104 7.451731 TTCATTAATAGAAGATGACCCCACT 57.548 36.000 0.00 0.00 30.10 4.00
104 105 9.442047 CTATTCATTAATAGAAGATGACCCCAC 57.558 37.037 1.01 0.00 45.07 4.61
105 106 9.170890 ACTATTCATTAATAGAAGATGACCCCA 57.829 33.333 12.58 0.00 45.07 4.96
106 107 9.442047 CACTATTCATTAATAGAAGATGACCCC 57.558 37.037 12.58 0.00 45.07 4.95
129 130 8.035984 GCCTTCAGAAACTAAGTACTAATCACT 58.964 37.037 0.00 0.00 0.00 3.41
130 131 8.035984 AGCCTTCAGAAACTAAGTACTAATCAC 58.964 37.037 0.00 0.00 0.00 3.06
131 132 8.135382 AGCCTTCAGAAACTAAGTACTAATCA 57.865 34.615 0.00 0.00 0.00 2.57
132 133 9.438228 AAAGCCTTCAGAAACTAAGTACTAATC 57.562 33.333 0.00 0.00 0.00 1.75
133 134 9.220767 CAAAGCCTTCAGAAACTAAGTACTAAT 57.779 33.333 0.00 0.00 0.00 1.73
134 135 7.172703 GCAAAGCCTTCAGAAACTAAGTACTAA 59.827 37.037 0.00 0.00 0.00 2.24
135 136 6.649557 GCAAAGCCTTCAGAAACTAAGTACTA 59.350 38.462 0.00 0.00 0.00 1.82
136 137 5.470437 GCAAAGCCTTCAGAAACTAAGTACT 59.530 40.000 0.00 0.00 0.00 2.73
137 138 5.470437 AGCAAAGCCTTCAGAAACTAAGTAC 59.530 40.000 0.00 0.00 0.00 2.73
138 139 5.470098 CAGCAAAGCCTTCAGAAACTAAGTA 59.530 40.000 0.00 0.00 0.00 2.24
139 140 4.276926 CAGCAAAGCCTTCAGAAACTAAGT 59.723 41.667 0.00 0.00 0.00 2.24
140 141 4.516698 TCAGCAAAGCCTTCAGAAACTAAG 59.483 41.667 0.00 0.00 0.00 2.18
141 142 4.460263 TCAGCAAAGCCTTCAGAAACTAA 58.540 39.130 0.00 0.00 0.00 2.24
142 143 4.085357 TCAGCAAAGCCTTCAGAAACTA 57.915 40.909 0.00 0.00 0.00 2.24
143 144 2.936202 TCAGCAAAGCCTTCAGAAACT 58.064 42.857 0.00 0.00 0.00 2.66
144 145 3.930634 ATCAGCAAAGCCTTCAGAAAC 57.069 42.857 0.00 0.00 0.00 2.78
145 146 4.341806 TGAAATCAGCAAAGCCTTCAGAAA 59.658 37.500 0.00 0.00 0.00 2.52
146 147 3.890756 TGAAATCAGCAAAGCCTTCAGAA 59.109 39.130 0.00 0.00 0.00 3.02
147 148 3.489355 TGAAATCAGCAAAGCCTTCAGA 58.511 40.909 0.00 0.00 0.00 3.27
148 149 3.928727 TGAAATCAGCAAAGCCTTCAG 57.071 42.857 0.00 0.00 0.00 3.02
149 150 4.561938 CCAATGAAATCAGCAAAGCCTTCA 60.562 41.667 0.00 0.00 0.00 3.02
150 151 3.930848 CCAATGAAATCAGCAAAGCCTTC 59.069 43.478 0.00 0.00 0.00 3.46
151 152 3.307199 CCCAATGAAATCAGCAAAGCCTT 60.307 43.478 0.00 0.00 0.00 4.35
152 153 2.235402 CCCAATGAAATCAGCAAAGCCT 59.765 45.455 0.00 0.00 0.00 4.58
153 154 2.624636 CCCAATGAAATCAGCAAAGCC 58.375 47.619 0.00 0.00 0.00 4.35
154 155 2.027837 ACCCCAATGAAATCAGCAAAGC 60.028 45.455 0.00 0.00 0.00 3.51
155 156 3.258872 TGACCCCAATGAAATCAGCAAAG 59.741 43.478 0.00 0.00 0.00 2.77
156 157 3.237746 TGACCCCAATGAAATCAGCAAA 58.762 40.909 0.00 0.00 0.00 3.68
157 158 2.886913 TGACCCCAATGAAATCAGCAA 58.113 42.857 0.00 0.00 0.00 3.91
158 159 2.601240 TGACCCCAATGAAATCAGCA 57.399 45.000 0.00 0.00 0.00 4.41
159 160 4.081531 TCAATTGACCCCAATGAAATCAGC 60.082 41.667 3.38 0.00 41.84 4.26
160 161 5.413499 GTCAATTGACCCCAATGAAATCAG 58.587 41.667 25.26 0.00 41.84 2.90
161 162 5.404466 GTCAATTGACCCCAATGAAATCA 57.596 39.130 25.26 0.00 41.84 2.57
174 175 4.340617 TGTAAGGATTGGGGTCAATTGAC 58.659 43.478 27.16 27.16 43.08 3.18
175 176 4.666412 TGTAAGGATTGGGGTCAATTGA 57.334 40.909 3.38 3.38 43.08 2.57
176 177 5.329035 CTTGTAAGGATTGGGGTCAATTG 57.671 43.478 0.00 0.00 43.08 2.32
187 188 8.386377 GATCCCTGATCTGCCTTGTAAGGATT 62.386 46.154 14.67 0.00 40.84 3.01
188 189 6.984885 GATCCCTGATCTGCCTTGTAAGGAT 61.985 48.000 14.67 0.00 40.84 3.24
189 190 5.728255 GATCCCTGATCTGCCTTGTAAGGA 61.728 50.000 14.67 0.00 40.84 3.36
190 191 3.495806 GATCCCTGATCTGCCTTGTAAGG 60.496 52.174 6.29 6.29 41.06 2.69
191 192 3.495806 GGATCCCTGATCTGCCTTGTAAG 60.496 52.174 0.00 0.00 38.91 2.34
192 193 2.439507 GGATCCCTGATCTGCCTTGTAA 59.560 50.000 0.00 0.00 38.91 2.41
193 194 2.050144 GGATCCCTGATCTGCCTTGTA 58.950 52.381 0.00 0.00 38.91 2.41
194 195 0.842635 GGATCCCTGATCTGCCTTGT 59.157 55.000 0.00 0.00 38.91 3.16
195 196 0.250209 CGGATCCCTGATCTGCCTTG 60.250 60.000 6.06 0.00 38.39 3.61
196 197 0.692419 ACGGATCCCTGATCTGCCTT 60.692 55.000 6.06 0.00 46.15 4.35
197 198 1.074926 ACGGATCCCTGATCTGCCT 60.075 57.895 6.06 0.00 46.15 4.75
198 199 1.369321 GACGGATCCCTGATCTGCC 59.631 63.158 6.06 0.00 46.15 4.85
199 200 1.369321 GGACGGATCCCTGATCTGC 59.631 63.158 6.06 6.00 46.15 4.26
203 204 2.109229 ATCAAGGACGGATCCCTGAT 57.891 50.000 6.06 4.34 46.90 2.90
209 210 1.033574 ACGAGGATCAAGGACGGATC 58.966 55.000 0.00 0.00 40.31 3.36
210 211 0.747255 CACGAGGATCAAGGACGGAT 59.253 55.000 0.00 0.00 33.17 4.18
211 212 0.323087 TCACGAGGATCAAGGACGGA 60.323 55.000 0.00 0.00 33.17 4.69
212 213 0.179134 GTCACGAGGATCAAGGACGG 60.179 60.000 0.00 0.00 33.17 4.79
213 214 0.526211 TGTCACGAGGATCAAGGACG 59.474 55.000 0.00 0.00 33.45 4.79
214 215 1.737363 GCTGTCACGAGGATCAAGGAC 60.737 57.143 0.00 0.00 33.17 3.85
215 216 0.532573 GCTGTCACGAGGATCAAGGA 59.467 55.000 0.00 0.00 33.17 3.36
216 217 0.247460 TGCTGTCACGAGGATCAAGG 59.753 55.000 0.00 0.00 33.17 3.61
217 218 2.084610 TTGCTGTCACGAGGATCAAG 57.915 50.000 0.00 0.00 33.17 3.02
218 219 2.224281 ACTTTGCTGTCACGAGGATCAA 60.224 45.455 0.00 0.00 33.17 2.57
219 220 1.344438 ACTTTGCTGTCACGAGGATCA 59.656 47.619 0.00 0.00 33.17 2.92
220 221 2.086054 ACTTTGCTGTCACGAGGATC 57.914 50.000 0.00 0.00 0.00 3.36
221 222 2.549754 CAAACTTTGCTGTCACGAGGAT 59.450 45.455 0.00 0.00 0.00 3.24
222 223 1.939934 CAAACTTTGCTGTCACGAGGA 59.060 47.619 0.00 0.00 0.00 3.71
223 224 2.389713 CAAACTTTGCTGTCACGAGG 57.610 50.000 0.00 0.00 0.00 4.63
276 277 9.838339 AGTTATCTCATCCGTTTTCTAATGATT 57.162 29.630 0.00 0.00 0.00 2.57
277 278 9.482627 GAGTTATCTCATCCGTTTTCTAATGAT 57.517 33.333 0.00 0.00 40.18 2.45
278 279 8.696374 AGAGTTATCTCATCCGTTTTCTAATGA 58.304 33.333 3.70 0.00 42.66 2.57
279 280 8.759641 CAGAGTTATCTCATCCGTTTTCTAATG 58.240 37.037 3.70 0.00 42.66 1.90
280 281 8.696374 TCAGAGTTATCTCATCCGTTTTCTAAT 58.304 33.333 3.70 0.00 42.66 1.73
281 282 8.063200 TCAGAGTTATCTCATCCGTTTTCTAA 57.937 34.615 3.70 0.00 42.66 2.10
282 283 7.640597 TCAGAGTTATCTCATCCGTTTTCTA 57.359 36.000 3.70 0.00 42.66 2.10
283 284 6.531503 TCAGAGTTATCTCATCCGTTTTCT 57.468 37.500 3.70 0.00 42.66 2.52
284 285 7.708752 AGATTCAGAGTTATCTCATCCGTTTTC 59.291 37.037 3.70 0.00 42.66 2.29
285 286 7.560368 AGATTCAGAGTTATCTCATCCGTTTT 58.440 34.615 3.70 0.00 42.66 2.43
286 287 7.118496 AGATTCAGAGTTATCTCATCCGTTT 57.882 36.000 3.70 0.00 42.66 3.60
287 288 6.723298 AGATTCAGAGTTATCTCATCCGTT 57.277 37.500 3.70 0.00 42.66 4.44
288 289 7.825331 TTAGATTCAGAGTTATCTCATCCGT 57.175 36.000 3.70 0.00 42.66 4.69
289 290 9.703892 AAATTAGATTCAGAGTTATCTCATCCG 57.296 33.333 3.70 0.00 42.66 4.18
297 298 9.319143 CCTCGTTCAAATTAGATTCAGAGTTAT 57.681 33.333 0.00 0.00 0.00 1.89
298 299 7.764443 CCCTCGTTCAAATTAGATTCAGAGTTA 59.236 37.037 0.00 0.00 0.00 2.24
299 300 6.595716 CCCTCGTTCAAATTAGATTCAGAGTT 59.404 38.462 0.00 0.00 0.00 3.01
300 301 6.109359 CCCTCGTTCAAATTAGATTCAGAGT 58.891 40.000 0.00 0.00 0.00 3.24
301 302 6.109359 ACCCTCGTTCAAATTAGATTCAGAG 58.891 40.000 0.00 0.00 0.00 3.35
302 303 6.049955 ACCCTCGTTCAAATTAGATTCAGA 57.950 37.500 0.00 0.00 0.00 3.27
303 304 6.743575 AACCCTCGTTCAAATTAGATTCAG 57.256 37.500 0.00 0.00 0.00 3.02
304 305 8.801882 AATAACCCTCGTTCAAATTAGATTCA 57.198 30.769 0.00 0.00 33.17 2.57
333 334 9.948964 CCTGTCAATACATTCATAGATTGGATA 57.051 33.333 0.00 0.00 34.37 2.59
334 335 8.443176 ACCTGTCAATACATTCATAGATTGGAT 58.557 33.333 0.00 0.00 34.37 3.41
335 336 7.805163 ACCTGTCAATACATTCATAGATTGGA 58.195 34.615 0.00 0.00 34.37 3.53
336 337 9.212641 CTACCTGTCAATACATTCATAGATTGG 57.787 37.037 0.00 0.00 34.37 3.16
337 338 9.770097 ACTACCTGTCAATACATTCATAGATTG 57.230 33.333 0.00 0.00 34.37 2.67
351 352 9.381038 ACACCTAATCATATACTACCTGTCAAT 57.619 33.333 0.00 0.00 0.00 2.57
352 353 8.638873 CACACCTAATCATATACTACCTGTCAA 58.361 37.037 0.00 0.00 0.00 3.18
353 354 7.232737 CCACACCTAATCATATACTACCTGTCA 59.767 40.741 0.00 0.00 0.00 3.58
354 355 7.450634 TCCACACCTAATCATATACTACCTGTC 59.549 40.741 0.00 0.00 0.00 3.51
355 356 7.302948 TCCACACCTAATCATATACTACCTGT 58.697 38.462 0.00 0.00 0.00 4.00
356 357 7.776618 TCCACACCTAATCATATACTACCTG 57.223 40.000 0.00 0.00 0.00 4.00
357 358 7.956315 ACATCCACACCTAATCATATACTACCT 59.044 37.037 0.00 0.00 0.00 3.08
358 359 8.035394 CACATCCACACCTAATCATATACTACC 58.965 40.741 0.00 0.00 0.00 3.18
359 360 8.803235 TCACATCCACACCTAATCATATACTAC 58.197 37.037 0.00 0.00 0.00 2.73
360 361 8.950007 TCACATCCACACCTAATCATATACTA 57.050 34.615 0.00 0.00 0.00 1.82
361 362 7.855784 TCACATCCACACCTAATCATATACT 57.144 36.000 0.00 0.00 0.00 2.12
362 363 9.507329 AAATCACATCCACACCTAATCATATAC 57.493 33.333 0.00 0.00 0.00 1.47
363 364 9.506018 CAAATCACATCCACACCTAATCATATA 57.494 33.333 0.00 0.00 0.00 0.86
364 365 8.219868 TCAAATCACATCCACACCTAATCATAT 58.780 33.333 0.00 0.00 0.00 1.78
365 366 7.572814 TCAAATCACATCCACACCTAATCATA 58.427 34.615 0.00 0.00 0.00 2.15
366 367 6.425735 TCAAATCACATCCACACCTAATCAT 58.574 36.000 0.00 0.00 0.00 2.45
367 368 5.814481 TCAAATCACATCCACACCTAATCA 58.186 37.500 0.00 0.00 0.00 2.57
368 369 6.543465 TGATCAAATCACATCCACACCTAATC 59.457 38.462 0.00 0.00 33.59 1.75
369 370 6.425735 TGATCAAATCACATCCACACCTAAT 58.574 36.000 0.00 0.00 33.59 1.73
370 371 5.814481 TGATCAAATCACATCCACACCTAA 58.186 37.500 0.00 0.00 33.59 2.69
371 372 5.430886 CTGATCAAATCACATCCACACCTA 58.569 41.667 0.00 0.00 35.06 3.08
372 373 4.267536 CTGATCAAATCACATCCACACCT 58.732 43.478 0.00 0.00 35.06 4.00
373 374 3.181493 GCTGATCAAATCACATCCACACC 60.181 47.826 0.00 0.00 35.06 4.16
374 375 3.441222 TGCTGATCAAATCACATCCACAC 59.559 43.478 0.00 0.00 35.06 3.82
375 376 3.441222 GTGCTGATCAAATCACATCCACA 59.559 43.478 14.10 0.00 35.06 4.17
376 377 3.441222 TGTGCTGATCAAATCACATCCAC 59.559 43.478 16.47 5.92 34.87 4.02
377 378 3.441222 GTGTGCTGATCAAATCACATCCA 59.559 43.478 20.75 3.57 40.88 3.41
378 379 3.441222 TGTGTGCTGATCAAATCACATCC 59.559 43.478 20.75 13.24 40.88 3.51
379 380 4.690184 TGTGTGCTGATCAAATCACATC 57.310 40.909 20.75 16.15 40.88 3.06
380 381 5.654603 ATTGTGTGCTGATCAAATCACAT 57.345 34.783 20.75 12.00 40.88 3.21
381 382 5.456548 AATTGTGTGCTGATCAAATCACA 57.543 34.783 16.47 16.47 37.14 3.58
382 383 5.921976 TCAAATTGTGTGCTGATCAAATCAC 59.078 36.000 12.77 12.77 35.06 3.06
383 384 6.086785 TCAAATTGTGTGCTGATCAAATCA 57.913 33.333 0.00 0.00 37.76 2.57
384 385 7.201496 GGATTCAAATTGTGTGCTGATCAAATC 60.201 37.037 0.00 0.00 0.00 2.17
385 386 6.592607 GGATTCAAATTGTGTGCTGATCAAAT 59.407 34.615 0.00 0.00 0.00 2.32
386 387 5.927689 GGATTCAAATTGTGTGCTGATCAAA 59.072 36.000 0.00 0.00 0.00 2.69
387 388 5.244402 AGGATTCAAATTGTGTGCTGATCAA 59.756 36.000 0.00 0.00 0.00 2.57
388 389 4.768448 AGGATTCAAATTGTGTGCTGATCA 59.232 37.500 0.00 0.00 0.00 2.92
389 390 5.320549 AGGATTCAAATTGTGTGCTGATC 57.679 39.130 0.00 0.00 0.00 2.92
390 391 7.414222 AATAGGATTCAAATTGTGTGCTGAT 57.586 32.000 0.00 0.00 0.00 2.90
391 392 6.403527 CGAATAGGATTCAAATTGTGTGCTGA 60.404 38.462 0.00 0.00 0.00 4.26
392 393 5.740569 CGAATAGGATTCAAATTGTGTGCTG 59.259 40.000 0.00 0.00 0.00 4.41
393 394 5.415701 ACGAATAGGATTCAAATTGTGTGCT 59.584 36.000 0.00 0.00 0.00 4.40
394 395 5.640732 ACGAATAGGATTCAAATTGTGTGC 58.359 37.500 0.00 0.00 0.00 4.57
395 396 9.061610 GTAAACGAATAGGATTCAAATTGTGTG 57.938 33.333 0.00 0.00 0.00 3.82
396 397 7.960738 CGTAAACGAATAGGATTCAAATTGTGT 59.039 33.333 0.00 0.00 43.02 3.72
397 398 7.428183 CCGTAAACGAATAGGATTCAAATTGTG 59.572 37.037 3.65 0.00 43.02 3.33
398 399 7.120138 ACCGTAAACGAATAGGATTCAAATTGT 59.880 33.333 3.65 0.00 43.02 2.71
399 400 7.469260 ACCGTAAACGAATAGGATTCAAATTG 58.531 34.615 3.65 0.00 43.02 2.32
400 401 7.551617 AGACCGTAAACGAATAGGATTCAAATT 59.448 33.333 3.65 0.00 43.02 1.82
401 402 7.046033 AGACCGTAAACGAATAGGATTCAAAT 58.954 34.615 3.65 0.00 43.02 2.32
402 403 6.400568 AGACCGTAAACGAATAGGATTCAAA 58.599 36.000 3.65 0.00 43.02 2.69
403 404 5.969423 AGACCGTAAACGAATAGGATTCAA 58.031 37.500 3.65 0.00 43.02 2.69
404 405 5.587388 AGACCGTAAACGAATAGGATTCA 57.413 39.130 3.65 0.00 43.02 2.57
405 406 6.498304 TGTAGACCGTAAACGAATAGGATTC 58.502 40.000 3.65 0.00 43.02 2.52
406 407 6.455360 TGTAGACCGTAAACGAATAGGATT 57.545 37.500 3.65 0.00 43.02 3.01
407 408 6.645790 ATGTAGACCGTAAACGAATAGGAT 57.354 37.500 3.65 0.00 43.02 3.24
408 409 6.017109 GGTATGTAGACCGTAAACGAATAGGA 60.017 42.308 3.65 0.00 43.02 2.94
409 410 6.145535 GGTATGTAGACCGTAAACGAATAGG 58.854 44.000 3.65 0.00 43.02 2.57
410 411 6.016777 AGGGTATGTAGACCGTAAACGAATAG 60.017 42.308 3.65 0.00 40.76 1.73
429 430 1.271840 TTGCTTGCGGGAGAGGGTAT 61.272 55.000 0.00 0.00 0.00 2.73
431 432 2.543067 GATTGCTTGCGGGAGAGGGT 62.543 60.000 0.00 0.00 0.00 4.34
433 434 0.813210 GAGATTGCTTGCGGGAGAGG 60.813 60.000 0.00 0.00 0.00 3.69
491 492 6.389091 TGTGCTTGATGTTTAATGGAATCAC 58.611 36.000 0.00 0.00 0.00 3.06
544 545 2.742372 CCACCGCCTGTGCTGTAC 60.742 66.667 0.00 0.00 44.01 2.90
550 551 3.687321 CTGATCCCCACCGCCTGTG 62.687 68.421 0.00 0.00 45.01 3.66
552 553 3.402681 ACTGATCCCCACCGCCTG 61.403 66.667 0.00 0.00 0.00 4.85
554 555 4.489771 CCACTGATCCCCACCGCC 62.490 72.222 0.00 0.00 0.00 6.13
556 557 4.838152 CGCCACTGATCCCCACCG 62.838 72.222 0.00 0.00 0.00 4.94
557 558 2.311688 CTACGCCACTGATCCCCACC 62.312 65.000 0.00 0.00 0.00 4.61
558 559 1.144057 CTACGCCACTGATCCCCAC 59.856 63.158 0.00 0.00 0.00 4.61
559 560 2.731571 GCTACGCCACTGATCCCCA 61.732 63.158 0.00 0.00 0.00 4.96
562 563 0.315568 CCTAGCTACGCCACTGATCC 59.684 60.000 0.00 0.00 0.00 3.36
563 564 0.315568 CCCTAGCTACGCCACTGATC 59.684 60.000 0.00 0.00 0.00 2.92
564 565 1.115930 CCCCTAGCTACGCCACTGAT 61.116 60.000 0.00 0.00 0.00 2.90
565 566 1.756950 CCCCTAGCTACGCCACTGA 60.757 63.158 0.00 0.00 0.00 3.41
566 567 2.797278 CCCCCTAGCTACGCCACTG 61.797 68.421 0.00 0.00 0.00 3.66
567 568 2.444140 CCCCCTAGCTACGCCACT 60.444 66.667 0.00 0.00 0.00 4.00
568 569 2.762875 ACCCCCTAGCTACGCCAC 60.763 66.667 0.00 0.00 0.00 5.01
570 571 3.547513 CCACCCCCTAGCTACGCC 61.548 72.222 0.00 0.00 0.00 5.68
571 572 4.237207 GCCACCCCCTAGCTACGC 62.237 72.222 0.00 0.00 0.00 4.42
572 573 3.547513 GGCCACCCCCTAGCTACG 61.548 72.222 0.00 0.00 0.00 3.51
573 574 2.366435 TGGCCACCCCCTAGCTAC 60.366 66.667 0.00 0.00 0.00 3.58
574 575 2.040884 CTGGCCACCCCCTAGCTA 60.041 66.667 0.00 0.00 0.00 3.32
588 589 4.016706 GTCCACGGACCACCCTGG 62.017 72.222 4.78 0.00 45.02 4.45
596 597 4.016706 CCAGGGTGGTCCACGGAC 62.017 72.222 15.93 7.75 43.87 4.79
597 598 3.777818 TTCCAGGGTGGTCCACGGA 62.778 63.158 15.93 13.70 39.03 4.69
598 599 2.137177 AATTCCAGGGTGGTCCACGG 62.137 60.000 15.93 11.57 39.03 4.94
599 600 0.251165 AAATTCCAGGGTGGTCCACG 60.251 55.000 15.93 2.12 39.03 4.94
600 601 1.545841 GAAATTCCAGGGTGGTCCAC 58.454 55.000 14.13 14.13 39.03 4.02
601 602 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
602 603 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
603 604 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
604 605 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
605 606 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
606 607 3.031013 GTTATGGGGAAATTCCAGGGTG 58.969 50.000 14.68 0.00 38.64 4.61
607 608 2.933139 AGTTATGGGGAAATTCCAGGGT 59.067 45.455 14.68 0.00 38.64 4.34
608 609 3.688049 AGTTATGGGGAAATTCCAGGG 57.312 47.619 14.68 0.00 38.64 4.45
609 610 4.352893 ACAAGTTATGGGGAAATTCCAGG 58.647 43.478 14.68 0.00 38.64 4.45
610 611 8.940397 ATATACAAGTTATGGGGAAATTCCAG 57.060 34.615 14.68 0.00 38.64 3.86
617 618 9.664777 ACTACACTATATACAAGTTATGGGGAA 57.335 33.333 0.00 0.00 0.00 3.97
678 679 9.883142 GGGTGGTCAATTGATGAAAATATTTAA 57.117 29.630 12.12 0.00 40.50 1.52
679 680 9.265862 AGGGTGGTCAATTGATGAAAATATTTA 57.734 29.630 12.12 0.00 40.50 1.40
680 681 8.042515 CAGGGTGGTCAATTGATGAAAATATTT 58.957 33.333 12.12 0.00 40.50 1.40
681 682 7.364939 CCAGGGTGGTCAATTGATGAAAATATT 60.365 37.037 12.12 0.00 40.50 1.28
682 683 6.098695 CCAGGGTGGTCAATTGATGAAAATAT 59.901 38.462 12.12 0.00 40.50 1.28
683 684 5.421693 CCAGGGTGGTCAATTGATGAAAATA 59.578 40.000 12.12 0.00 40.50 1.40
684 685 4.223477 CCAGGGTGGTCAATTGATGAAAAT 59.777 41.667 12.12 0.00 40.50 1.82
685 686 3.577848 CCAGGGTGGTCAATTGATGAAAA 59.422 43.478 12.12 0.00 40.50 2.29
686 687 3.164268 CCAGGGTGGTCAATTGATGAAA 58.836 45.455 12.12 0.00 40.50 2.69
687 688 2.378208 TCCAGGGTGGTCAATTGATGAA 59.622 45.455 12.12 0.00 40.50 2.57
688 689 1.991813 TCCAGGGTGGTCAATTGATGA 59.008 47.619 12.12 0.00 39.03 2.92
689 690 2.291153 ACTCCAGGGTGGTCAATTGATG 60.291 50.000 12.12 4.47 39.03 3.07
690 691 1.995542 ACTCCAGGGTGGTCAATTGAT 59.004 47.619 12.12 0.00 39.03 2.57
691 692 1.444933 ACTCCAGGGTGGTCAATTGA 58.555 50.000 3.38 3.38 39.03 2.57
692 693 3.652057 ATACTCCAGGGTGGTCAATTG 57.348 47.619 0.00 0.00 39.03 2.32
693 694 3.309121 CCAATACTCCAGGGTGGTCAATT 60.309 47.826 0.00 0.00 39.03 2.32
694 695 2.242196 CCAATACTCCAGGGTGGTCAAT 59.758 50.000 0.00 0.00 39.03 2.57
695 696 1.633432 CCAATACTCCAGGGTGGTCAA 59.367 52.381 0.00 0.00 39.03 3.18
696 697 1.285280 CCAATACTCCAGGGTGGTCA 58.715 55.000 0.00 0.00 39.03 4.02
697 698 1.286248 ACCAATACTCCAGGGTGGTC 58.714 55.000 0.00 0.00 38.16 4.02
698 699 1.203440 AGACCAATACTCCAGGGTGGT 60.203 52.381 0.00 0.00 45.23 4.16
699 700 1.210478 CAGACCAATACTCCAGGGTGG 59.790 57.143 0.00 0.00 39.43 4.61
700 701 1.210478 CCAGACCAATACTCCAGGGTG 59.790 57.143 0.00 0.00 32.77 4.61
701 702 1.584724 CCAGACCAATACTCCAGGGT 58.415 55.000 0.00 0.00 36.05 4.34
702 703 0.181350 GCCAGACCAATACTCCAGGG 59.819 60.000 0.00 0.00 0.00 4.45
703 704 1.207791 AGCCAGACCAATACTCCAGG 58.792 55.000 0.00 0.00 0.00 4.45
704 705 2.223829 CGTAGCCAGACCAATACTCCAG 60.224 54.545 0.00 0.00 0.00 3.86
705 706 1.754803 CGTAGCCAGACCAATACTCCA 59.245 52.381 0.00 0.00 0.00 3.86
706 707 2.510768 CGTAGCCAGACCAATACTCC 57.489 55.000 0.00 0.00 0.00 3.85
727 728 1.039233 GGCAATGATCCCCACCAGTG 61.039 60.000 0.00 0.00 0.00 3.66
728 729 1.307647 GGCAATGATCCCCACCAGT 59.692 57.895 0.00 0.00 0.00 4.00
729 730 0.105862 ATGGCAATGATCCCCACCAG 60.106 55.000 0.00 0.00 0.00 4.00
730 731 0.339162 AATGGCAATGATCCCCACCA 59.661 50.000 0.00 0.00 0.00 4.17
860 861 3.561725 CGTTGAAGCAAAGGAGAACTTCT 59.438 43.478 0.00 0.00 38.85 2.85
861 862 3.560068 TCGTTGAAGCAAAGGAGAACTTC 59.440 43.478 0.00 0.00 38.85 3.01
862 863 3.541632 TCGTTGAAGCAAAGGAGAACTT 58.458 40.909 0.00 0.00 42.52 2.66
863 864 3.194005 TCGTTGAAGCAAAGGAGAACT 57.806 42.857 0.00 0.00 0.00 3.01
864 865 4.024048 TCAATCGTTGAAGCAAAGGAGAAC 60.024 41.667 0.00 0.00 36.59 3.01
865 866 4.133820 TCAATCGTTGAAGCAAAGGAGAA 58.866 39.130 0.00 0.00 36.59 2.87
1081 1082 5.718146 CGTACTCAGCAGGATGAATGATAT 58.282 41.667 0.00 0.00 39.69 1.63
1095 1096 4.530857 ATGGCCGGCGTACTCAGC 62.531 66.667 22.54 3.93 0.00 4.26
1105 1106 2.983879 AAGGTGAAGGGATGGCCGG 61.984 63.158 0.00 0.00 33.83 6.13
1156 1157 1.228657 GGGCTCGTCAGTTGACCAAC 61.229 60.000 6.68 4.81 41.86 3.77
1173 1174 1.528824 CCACATACCAGCCTGAGGG 59.471 63.158 0.00 0.00 0.00 4.30
1386 1387 2.283145 AGGTGAATTGCTGCAGAACT 57.717 45.000 20.43 0.00 0.00 3.01
1394 1395 1.145738 AGTGGGTGAAGGTGAATTGCT 59.854 47.619 0.00 0.00 0.00 3.91
1493 1531 6.775088 TGATAATCAAATTCTCGTGAGCAAC 58.225 36.000 0.00 0.00 0.00 4.17
1693 1731 3.187842 GTGTTTCACCATTCTACCGTTCC 59.812 47.826 0.00 0.00 0.00 3.62
1789 1827 1.811778 ATCCCTCTAATGCAGCTCCA 58.188 50.000 0.00 0.00 0.00 3.86
1816 1854 5.361285 TGCTTCTTAGGAGTGACTAGAATCC 59.639 44.000 0.00 0.00 0.00 3.01
1909 1947 8.207350 TCCAACCATATTTCCCACAAATTTTA 57.793 30.769 0.00 0.00 0.00 1.52
1977 2029 1.581934 TCTGCGTCAGTTTGGACTTG 58.418 50.000 6.72 0.00 35.63 3.16
2231 2283 4.035091 CGGAGACAACAAAACATCACTCAA 59.965 41.667 0.00 0.00 0.00 3.02
2237 2289 4.989168 ACTCTACGGAGACAACAAAACATC 59.011 41.667 0.00 0.00 41.86 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.