>input_sequence_83754
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----------------------------------------ATGGCCGGTGGCAGCCTGGAGACGGCGTGGGAGCTCGCCG
AACTTTTCGTCCTCCGCCCCGTCCTGGCCGTCACCTTCGTCATATCATTCATCCTGCTGAGTACGCCGGCCATCCCTTCA
CCTTGGCTCGTTCCCTTTTAATTTCGGCTCGTTCGTGTTGGTCAACTGACGAGCCCTCAGGCTGGTATGTGGCGTGGAGG
ACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGTCAAGCCCAAGCCCCCCAA
CCGCGGGCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGA----------------------------------
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>chr1B_1_TraesCS1B01G185100
TTCAATTTTTTCCTAGGAATTATCATTGCATGCTAAAAAAAATTGCCATCCTCGCCAGGGACGAAGCTAGAAAAAAAAGT
TCAATGGGGTCAATGTCTATGACAGTGGGGTCATCTTCTATTAATGAATAGTGATTAGTACTTAGTTTCTGAAGGCTTTG
CTGATTTCATTGGGGTCAATTGACCCCAATCCTTACAAGGCAGATCAGGGATCCGTCCTTGATCCTCGTGACAGCAAAGT
TTGCCCTAAAAAACGTTATATTTGACATGCTTAAAAAATCATTAGAAAACGGATGAGATAACTCTGAATCTAATTTGAAC
GAGGGTTATTTTTTATCCAATCTATGAATGTATTGACAGGTAGTATATGATTAGGTGTGGATGTGATTTGATCAGCACAC
AATTTGAATCCTATTCGTTTACGGTCTACATACCCTCTCCCGCAAGCAATCTCCTTTGCTTCTTTCTCTTTTCTTTTTTT
GAAACTGGAAAGTGATTCCATTAAACATCAAGCACAGCTAAGTCGCTGGCCACAAGGTCACATAGTACAGCACAGGCGGT
GGGGATCAGTGGCGTAGCTAGGGGGTGGCCAGGGTGGTCCGTGGACCACCCTGGAATTTCCCCATAACTTGTATATAGTG
TAGTAAAGAAATATTTCTTTGAAACTAAATAAATATATTTAAATATTTTCATCAATTGACCACCCTGGAGTATTGGTCTG
GCTACGCCACTGGTGGGGATCATTGCCATTAGCTCCAATTGCAGCAAAAGCATGAGCTACAGAGTTACAGCTACGAGGAG
CGAACGATACATAAGCAGCAATCTCCTTTTGCTTTCTTTTTGGAAAAAAAAAGAAAAAAAAGAAGTTCTCCTTTGCTTCA
ACGATTGAGCAACCAGCAATCTCTTGGTTTAGGGCCGACATGTCATAGACTCATGGGCCTCCCCTCAACCCTCGTCGCAC
AGAACGAGATTCCTTTCCCCCCACGAAGGCCGGCGGCGCCATGGCCGGTGGCAGCCTGGAGACGGCGTGGGAGCTCGCCG
AACTTTTCGTCCTCCGCCCCGTCCTGGCCGTCACCTTCGTCATATCATTCATCCTGCTGAGTACGCCGGCCATCCCTTCA
CCTTGGCTCGTTCCCTTTTAATTTCGGCTCGTTCGTGTTGGTCAACTGACGAGCCCTCAGGCTGGTATGTGGCGTGGAGG
ACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGTCAAGCCCAAGCCCCCCAA
CCGCGGGCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGAAGGCTCTAACCTCCCCAAGTCTCCTTTTACCTCT
GTTCCCATTTGGATGTGCTGCTGTTGAGTTCTGCAGCAATTCACCTTCACCCACTTTTGCTCAATTCTACTCA-------
------------------------------GTGCTGTCGAATGTAGATTGGGTTGGTGTATTGATGGATAGCTTTATTTT
GATGTTCGCAGTTGCTCACGAGAATTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGATCTGTGAAATATTAGTTT
AAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTTCCCTGCAACTACACTGCAGTCTTTT
AGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGGGAACGGTAGAATGGTGAAACACTCGTGTT
TAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCTGTTTTGGAGCTGCATTAG
AGGGATTAGAGTAGGATTCTAGTCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGCAAATACCTGCAGCCGTAT
TGTTTCAAAACTTTTTATCCTTTCTATAAAATTTGTGGGAAATATGGTTGGAGAGCAATGAG--------------TATT
AAGTTTCATGCACCAACCAGTAGAACCACAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTCCACGTATACTTCAACAGA
AGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAATTTTCTATATTTTATCACT
ATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAGAGAGTAAGTATTTGAAAAGAG
GAAAGATATTTGTGAAGTATTATGATGTGTATATTCTAGCATTTGAGTGATGTTTTGTTGTCTCCGT-AGAGTCTTCTTG
TTTTACTTTCACGCGTAGACCAACATAAAAAATTACCACGCTTTTCAGTTGTATGTTA
>chr1D_412
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-----------TATTCGTTTACGGTCTACTTCCTCTCTCCCACAAGCAATCTCGTTTGCTTCTTTTTCTTTTCTTTTTCT
GAAACTGGAAACTGATTCCATTAAACATCAAGCACAGCTAAGTCGCTGGCCACAAGGTCACATACTCACATATATCATTC
GGCACGTCCTCCAACCACAGGC----------------------------------------------------------
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-----------GGTGGGGATCATTGCCATTAGCTCCAATTGCAGCAAGAGCATGAGCTACAGAGTTGCAGCTACGAGGAG
CGAACGATACAGAAACAGCAATCTCCTTTTGCTTTTTTTTTGAAAAAAAGAAGAAAAAAAG-----TCTCCTTTGCTTCA
ACGATTGAGCAACCAGCAATCTTA--GTTTAGGTCCGACATGTCATAGACTCATGGACCTCCCCTCAACCCTCATCGCAC
AGAACGAGATTCCTTTCTCCCCCCGAAGGCCGTCGGCGCCATGGCCGGTGGCAGCCTGGAGACGGCGTGGGAGCTCGCCG
AACTTTTCGTCCTCCGTCCCGTCCTGGCCGTCACCTTCGTCCTGTCATTCATCCTCCTGAGTACGACGGCCATCCCTTCA
CCTTGGCTCGTTCCCCTTTAATTTCGGCTCGTCCGTCTTGGTCAACTGACGAG-CCTCAGGCTGGTATGTGGCGTGGAGG
ACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGTCAAGCCCAAGCCCCCAAA
CCGCGGTCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGACGGCTCTAACCTCCCCAAGTCTCCTTTTACTTCT
GTTCCCATTTGGATGTGCTGCTGTTGTGTTCTGCGGCAATTAATCTTCACCCACTTTTGCTCAATTCTAGCCAAGATTTC
TATTCCGCTGTGGGCACAGCTGAGATACTCGTGCTGTGGAATGTAGATTGGGTTGGTGTATTCATGGATAGCTTTATTTT
GATGTTCGCAATTGCTCACGAGATTTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGATCTGTGAAATGTTAGTTT
AAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTTCTCTGCAACTACACTGCAGTCTTTT
AGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGTGAACGGTAGAATGGTGAAACACTCGTGTT
TAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCTGTTTCGGAGCTGCATTAG
AGGGATTAGAGTACGATTCTAATCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGCAAATACCTGCAGCCGTAT
TGTTTCAAAACTTTTTATCCCTTCTACCAAATTTGTGGGAAATATGGTTGGAGAGCAATGAG--------------TATT
AAGTTTCATGCATCAACCAGTAGAACCAAAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTCCACGTATACTTCAACAGA
AGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAATTTTCTATATTTTATCACT
ATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAGAGAGTAATTATTTGAAAAGAG
GAAAGATATTTGTAAAGTATTATGATGTGTATATTCTAGCATCTGAGTTATGTTTTGTTGTCTCCGT-AGAGTCTTCTTA
TTTTACTTTCACGCGTAGACCAACATAAAAAATTACCACGCTTTTCAGTTGTATGTTA
>chr1A_751
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------------------------------AGCTCCAATCGCGGCAAGAGCATGAGCTACAGAGTTACAGCTACGAGGAG
CGAACGATACAGAAACAGCAATCTCCTTTTGCTTTTCTTTTTGGAAAAACA------AAAG-----TCTCCTTTGCTTCA
ACGATTGAGCAGCCAGCAATCTCTTGGTTTAGGGCCGACATGTCATAGACTCATGGGCCTCCCCTCAACCCTCGTCGCAC
AGAACGAGATTCCTTCCTCCCCCCGAAGGCCGGCAGCGCCATGGCCGGTGGCAGCCTGGAGACGGCGTGGGAGCTCGCCC
AACTTTTCGTCCTCCGCCCCGTCCTGGCCGTCACCTTCGTGCTATCATTCATCCTCCTGAGTACGGCGGCCGTCCCTTCA
CCTTGGCTCGTTCCCTTTTAATTTCGGCCCGTTCGTCTTGGTCAACTGACGAG-CCTCAGGTTGGTATGTGGCGTGGAGG
ACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGTCAAGCCCAAGCCCCCCAA
CCGCGGGCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGAAGGCTCTAACCTCCCCAAGTCTCCTTTTACTTCT
GTTCTCATTTGGATGTGCTGCTGTTGGGGTCTGCGGCAATTCACCTTCACCCACTTTTGCTCAATTCTACTCA-------
------------------------------GTGCTGTCGAATGTAGATTGGGTTGGTGTATTGATGGATAGCTTTATTTT
GATGTTCGCAATTGCTCACGAGAATTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGATCTGTAAAATATTAGTTT
AAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTCCTCTGCAACTACACTGCAGTCTTTT
AGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGTGAACGGTAGAATGGTGAAACACTCGTGTT
TAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCTGTTTCGGAGCTGCATTAG
AGGGATTAGAGTACGATTCTAATCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGCAAATACCTGCAGCTGTAT
TGTTTCAAAACTTTTTATCCCTTCTACAAAATTTGTGGGAAATATGGTTGGAGAGCAATTAG--------------TATT
AAGTTTCATGCATCAACCAGTAGAACCAAAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTCAACGTATACTTCAACAGA
AGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAATTTTCTATATTTTATCACT
ATTAATTGAAAATTGAGCATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAAAGAGTAAGTATTTGAAAAGAG
GAAAGATATTTGTAAAGTATTATGATGTGTATATTCTAGCATCTGAGTTATGTTTTGTTGTCTCCGTAAGAGTCTTCTTG
TTTTACTTTCACGCGTAGACCAACATAAAAAATTACCACGCTTTTCAGTTGTATGTTA
>chr1B_1777
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-----------------------------------------------------CCGCTGACTGTTTCGGAGCTGCACTTG
AGGGATTAAAGAACACCTCTAGTCACTCCTAATAAGTTGAACCATTTCACGGCTGGCACTGCAAATACCTGCACCCATAT
TGTTTCAAAACTTTTTATTCCTTCTACAAAATGTGTGGGAAATATGGTTG-AGAGCACTGAGTTGATGATTGAAGATATT
AAGTTTCATGCGCCAATCAGTAGAACCAAAAGTCCAAACTGACGCAGAGGGTTGAGCAAATACACGTATACTTCAACAGA
AGAAC------GTAAAGCCTGTTTTGTTCATAGAGAGTTAAGATAAAAGTGCCG-ATGAAATTTTCTATATTTTATCACT
ATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTGGAGAGTAAGTATTTGAAAAGAG
GAAAGATATTTGTAAACTATTGTGATGTGTATATTCTAGCATCTGAGTTAGGTTTTGTTGTCTCCGT-AGAGTCTTCTTG
TTTTACATTCACGCGTAGACCAACATAAAAAATTACCACGCTTTTCAGTTGTATGTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------------S-S-S-------S-----------S-----------S------------S-
-----------S----------------------------------------------------S-SSSSS-S-SSSSSS
--SSSSSSS-SSSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------------------------------S--------------------------------
-----------S--S--------------------S-------------S----------SSSSSS--------------
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-----------------S----S---------------------------------------------------------
-----------------------------------------S-------------S---------S--------------
------------------------------------S----------------S--------------------------
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----------------------------------------------------------------------------S---
--------------------------S-------S---------------------------------------------
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----------S---------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------S-----------------------------
------------------------------------------------------------------S-------------
-------------S------------------------------------------------------------------
--------------------S-----S-----------------------------------------------------
----------------------------S---------------------------------------------------
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-------------S----------------------------S-----S-------------------------------
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>forward_232
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----------------------------------------------------CCGTCCTTGATCCTCGTGAC--------
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>reverse_1395
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----------------------------------AGCAATTCACCTTCACCCACT-------------------------
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