Multiple sequence alignment - TraesCS1B01G183700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G183700 chr1B 100.000 4529 0 0 1 4529 330505503 330500975 0.000000e+00 8364.0
1 TraesCS1B01G183700 chr1A 92.948 2510 129 26 239 2724 300107678 300105193 0.000000e+00 3611.0
2 TraesCS1B01G183700 chr1A 89.247 930 58 28 2772 3679 300104924 300104015 0.000000e+00 1125.0
3 TraesCS1B01G183700 chr1A 85.000 180 8 7 3992 4167 300103463 300103299 1.010000e-36 165.0
4 TraesCS1B01G183700 chr1A 88.550 131 6 4 66 189 300107813 300107685 2.820000e-32 150.0
5 TraesCS1B01G183700 chr1A 77.778 189 26 13 3639 3817 300103839 300103657 8.020000e-18 102.0
6 TraesCS1B01G183700 chr1A 98.113 53 1 0 4200 4252 300103302 300103250 4.820000e-15 93.5
7 TraesCS1B01G183700 chr1A 92.308 52 3 1 4257 4308 351880356 351880306 6.280000e-09 73.1
8 TraesCS1B01G183700 chr1D 92.201 2231 112 34 215 2403 247303430 247305640 0.000000e+00 3099.0
9 TraesCS1B01G183700 chr1D 90.664 964 50 19 2723 3674 247306147 247307082 0.000000e+00 1245.0
10 TraesCS1B01G183700 chr1D 89.640 222 14 1 5 217 247303051 247303272 1.610000e-69 274.0
11 TraesCS1B01G183700 chr1D 85.091 275 20 15 3904 4169 247307152 247307414 1.250000e-65 261.0
12 TraesCS1B01G183700 chr1D 85.795 176 8 7 4368 4529 247307764 247307936 2.170000e-38 171.0
13 TraesCS1B01G183700 chr1D 91.667 60 4 1 3757 3815 247307084 247307143 1.040000e-11 82.4
14 TraesCS1B01G183700 chr1D 94.231 52 2 1 4202 4252 247307411 247307462 1.350000e-10 78.7
15 TraesCS1B01G183700 chr1D 87.931 58 5 1 4262 4319 360385903 360385958 2.920000e-07 67.6
16 TraesCS1B01G183700 chr7A 94.000 50 3 0 4257 4306 290919998 290920047 4.860000e-10 76.8
17 TraesCS1B01G183700 chr4D 95.745 47 2 0 4257 4303 317189907 317189861 4.860000e-10 76.8
18 TraesCS1B01G183700 chr4D 88.136 59 3 4 4262 4317 26897988 26898045 2.920000e-07 67.6
19 TraesCS1B01G183700 chr7D 95.745 47 0 2 4257 4302 124782731 124782686 1.750000e-09 75.0
20 TraesCS1B01G183700 chr2A 90.909 55 2 3 4257 4310 377798819 377798871 2.260000e-08 71.3
21 TraesCS1B01G183700 chr2A 87.097 62 3 5 4262 4320 337716758 337716817 1.050000e-06 65.8
22 TraesCS1B01G183700 chr2A 87.097 62 3 5 4262 4320 337719134 337719075 1.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G183700 chr1B 330500975 330505503 4528 True 8364.000000 8364 100.000000 1 4529 1 chr1B.!!$R1 4528
1 TraesCS1B01G183700 chr1A 300103250 300107813 4563 True 874.416667 3611 88.606000 66 4252 6 chr1A.!!$R2 4186
2 TraesCS1B01G183700 chr1D 247303051 247307936 4885 False 744.442857 3099 89.898429 5 4529 7 chr1D.!!$F2 4524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 1038 0.101040 TTATACGCCAGAACGGACGG 59.899 55.0 0.00 0.00 38.24 4.79 F
1169 1351 0.108804 CGCTTCCTTGCCTCGAGTAA 60.109 55.0 12.31 5.47 0.00 2.24 F
2368 2587 0.110486 GTGGGCCAGAGGAGAAAACA 59.890 55.0 6.40 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1868 0.256464 CCTCCACCTCCTCTACGTCT 59.744 60.0 0.00 0.0 0.0 4.18 R
2422 2678 0.323302 TGGCCGCATAACTCACAGAA 59.677 50.0 0.00 0.0 0.0 3.02 R
4135 4930 0.038159 AGCTCCTGTCGCACAGTAAC 60.038 55.0 13.06 4.5 44.5 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.642466 AGGAACCCTAAACTTCCTCTTG 57.358 45.455 0.00 0.00 42.29 3.02
40 41 0.469917 CCTCTTGTGTGGTCTGTGGT 59.530 55.000 0.00 0.00 0.00 4.16
64 65 0.879839 GCCAAACCTTGCACGCATTT 60.880 50.000 0.00 0.00 0.00 2.32
115 116 1.815757 ACTCCTGGTTAACACCCACT 58.184 50.000 8.10 0.00 43.49 4.00
160 170 5.945155 TCTATTGGTACCAAATTTTGCGAC 58.055 37.500 30.31 3.83 39.55 5.19
179 189 1.635663 CGGCTTGCGAGGTTAACCAG 61.636 60.000 26.26 19.45 38.89 4.00
193 203 7.224949 CGAGGTTAACCAGAGGATAGAAAAATC 59.775 40.741 26.26 8.16 38.89 2.17
204 214 6.488715 AGGATAGAAAAATCTGGGCATATCC 58.511 40.000 0.00 0.00 38.35 2.59
205 215 6.045931 AGGATAGAAAAATCTGGGCATATCCA 59.954 38.462 9.80 0.00 39.81 3.41
217 227 3.319972 GGGCATATCCACTACGAACTACA 59.680 47.826 0.00 0.00 36.21 2.74
228 398 6.530534 CCACTACGAACTACAACTTTATCAGG 59.469 42.308 0.00 0.00 0.00 3.86
408 579 3.774702 GTTTCTCCACGGCGCGTC 61.775 66.667 6.90 3.30 38.32 5.19
436 607 3.699894 CTGAGCAGTGGCCGGACT 61.700 66.667 9.82 0.00 42.56 3.85
475 646 4.666253 ACCACAAGGCATGGCGCT 62.666 61.111 14.30 2.02 41.31 5.92
476 647 3.818787 CCACAAGGCATGGCGCTC 61.819 66.667 14.30 0.00 41.91 5.03
511 687 2.667318 CGCAGAACGCACGGAACAT 61.667 57.895 0.00 0.00 42.60 2.71
553 729 0.710567 GACGAGACGAAGCACACATG 59.289 55.000 0.00 0.00 0.00 3.21
606 783 1.062044 ACCAAGGAGAGGGGTAGATCC 60.062 57.143 0.00 0.00 31.89 3.36
672 849 0.890090 GGATCTAGCGAGGTACGGCT 60.890 60.000 9.26 9.26 42.83 5.52
748 925 3.520550 GGGGGTGGGAATTGGACT 58.479 61.111 0.00 0.00 0.00 3.85
749 926 2.717958 GGGGGTGGGAATTGGACTA 58.282 57.895 0.00 0.00 0.00 2.59
750 927 1.231963 GGGGGTGGGAATTGGACTAT 58.768 55.000 0.00 0.00 0.00 2.12
751 928 1.573857 GGGGGTGGGAATTGGACTATT 59.426 52.381 0.00 0.00 0.00 1.73
752 929 2.666317 GGGGTGGGAATTGGACTATTG 58.334 52.381 0.00 0.00 0.00 1.90
753 930 2.666317 GGGTGGGAATTGGACTATTGG 58.334 52.381 0.00 0.00 0.00 3.16
754 931 2.243736 GGGTGGGAATTGGACTATTGGA 59.756 50.000 0.00 0.00 0.00 3.53
755 932 3.555966 GGTGGGAATTGGACTATTGGAG 58.444 50.000 0.00 0.00 0.00 3.86
756 933 3.202151 GGTGGGAATTGGACTATTGGAGA 59.798 47.826 0.00 0.00 0.00 3.71
757 934 4.325030 GGTGGGAATTGGACTATTGGAGAA 60.325 45.833 0.00 0.00 0.00 2.87
758 935 4.884164 GTGGGAATTGGACTATTGGAGAAG 59.116 45.833 0.00 0.00 0.00 2.85
766 944 3.385115 GACTATTGGAGAAGAGGGGGAA 58.615 50.000 0.00 0.00 0.00 3.97
791 969 1.470098 CCGAAAGAGACCAAATGCCAG 59.530 52.381 0.00 0.00 0.00 4.85
792 970 2.154462 CGAAAGAGACCAAATGCCAGT 58.846 47.619 0.00 0.00 0.00 4.00
805 986 1.610363 TGCCAGTGCGGTTCAAAATA 58.390 45.000 0.00 0.00 41.78 1.40
810 991 1.538075 AGTGCGGTTCAAAATAACCCG 59.462 47.619 0.00 0.00 45.18 5.28
828 1009 0.725117 CGAGCCCAACGGTTACATTC 59.275 55.000 0.00 0.00 0.00 2.67
837 1018 1.074889 ACGGTTACATTCCTGGCCTTT 59.925 47.619 3.32 0.00 0.00 3.11
857 1038 0.101040 TTATACGCCAGAACGGACGG 59.899 55.000 0.00 0.00 38.24 4.79
989 1171 2.757508 CCTGGAGCAGAGGAGCGA 60.758 66.667 0.00 0.00 40.15 4.93
1169 1351 0.108804 CGCTTCCTTGCCTCGAGTAA 60.109 55.000 12.31 5.47 0.00 2.24
1455 1637 1.142748 CCCCGAGAAGCTGCTACTG 59.857 63.158 0.90 0.00 0.00 2.74
1518 1700 2.757099 GAGGAGTTCGGGGCCGTA 60.757 66.667 0.00 0.00 40.74 4.02
1521 1703 2.132352 GGAGTTCGGGGCCGTAGAT 61.132 63.158 0.00 0.00 40.74 1.98
1522 1704 0.825010 GGAGTTCGGGGCCGTAGATA 60.825 60.000 0.00 0.00 40.74 1.98
1543 1725 1.203758 TCGACTTGCTAGCGGAATTCA 59.796 47.619 10.77 0.00 0.00 2.57
1551 1733 2.146342 CTAGCGGAATTCATTGGCGAT 58.854 47.619 7.93 2.45 0.00 4.58
1586 1768 1.957765 GAGGAGGACGGCTGGGTTAC 61.958 65.000 0.00 0.00 0.00 2.50
1655 1837 2.644299 AGATTGAAGTGGTGGATGGTGA 59.356 45.455 0.00 0.00 0.00 4.02
1658 1840 1.098050 GAAGTGGTGGATGGTGATGC 58.902 55.000 0.00 0.00 0.00 3.91
1692 1874 4.111016 CCACCGCGCAGAGACGTA 62.111 66.667 8.75 0.00 34.88 3.57
1710 1892 1.950748 TAGAGGAGGTGGAGGAGGGC 61.951 65.000 0.00 0.00 0.00 5.19
1733 1915 1.256812 GGTGACCAATTGGAGGGTTG 58.743 55.000 31.22 2.62 37.57 3.77
1734 1916 1.480498 GGTGACCAATTGGAGGGTTGT 60.480 52.381 31.22 6.33 37.57 3.32
1735 1917 2.316108 GTGACCAATTGGAGGGTTGTT 58.684 47.619 31.22 5.50 37.57 2.83
1860 2045 2.825836 GGGAAGCTGATGGGTGCG 60.826 66.667 0.00 0.00 0.00 5.34
1923 2111 3.074412 GTTCGTCATGGATCAGGTTTGT 58.926 45.455 0.00 0.00 0.00 2.83
1936 2124 8.087750 TGGATCAGGTTTGTAAACATTTGATTC 58.912 33.333 15.76 14.90 40.63 2.52
1952 2140 8.816894 ACATTTGATTCTCAACCTAGAAGAGTA 58.183 33.333 0.00 0.00 38.81 2.59
2004 2194 7.730364 ACAATTGACTTCGAGTTTCTAATGT 57.270 32.000 13.59 0.00 0.00 2.71
2014 2204 9.746711 CTTCGAGTTTCTAATGTTGTTTGATAG 57.253 33.333 0.00 0.00 0.00 2.08
2078 2289 8.018537 ACTACAACATATTGCTATAGTCCACA 57.981 34.615 0.84 0.00 39.66 4.17
2093 2304 4.256920 AGTCCACAGAACATGATAAGCAC 58.743 43.478 0.00 0.00 0.00 4.40
2100 2311 6.745907 CACAGAACATGATAAGCACAATTCAG 59.254 38.462 0.00 0.00 0.00 3.02
2107 2318 7.826252 ACATGATAAGCACAATTCAGAAGTAGT 59.174 33.333 0.00 0.00 0.00 2.73
2113 2324 8.709386 AAGCACAATTCAGAAGTAGTACATAG 57.291 34.615 2.52 0.00 0.00 2.23
2145 2359 6.215121 TGCAATGAGTGAAACCTGTTTATTG 58.785 36.000 9.34 9.34 37.80 1.90
2146 2360 5.634859 GCAATGAGTGAAACCTGTTTATTGG 59.365 40.000 13.13 0.00 37.80 3.16
2168 2383 6.464222 TGGAAAACACAAGTAGAGGACTATG 58.536 40.000 0.00 0.00 37.44 2.23
2177 2392 3.449018 AGTAGAGGACTATGTGCCAACAG 59.551 47.826 0.00 0.00 40.39 3.16
2194 2409 4.520492 CCAACAGGAGCTGTAAATCTTGTT 59.480 41.667 0.00 0.00 44.62 2.83
2196 2411 5.695851 ACAGGAGCTGTAAATCTTGTTTG 57.304 39.130 0.00 0.00 43.46 2.93
2293 2512 2.341846 AAGCAGTGGACGGAAAGAAA 57.658 45.000 0.00 0.00 0.00 2.52
2317 2536 7.658179 ATGTATCATATGTGAAGCGGTTAAG 57.342 36.000 0.00 0.00 38.01 1.85
2368 2587 0.110486 GTGGGCCAGAGGAGAAAACA 59.890 55.000 6.40 0.00 0.00 2.83
2403 2659 9.337396 TCAATTACTGAAACAACTTATGTGAGT 57.663 29.630 0.00 0.00 42.99 3.41
2404 2660 9.950680 CAATTACTGAAACAACTTATGTGAGTT 57.049 29.630 0.00 0.00 42.99 3.01
2407 2663 9.997482 TTACTGAAACAACTTATGTGAGTTTTC 57.003 29.630 11.41 6.13 42.99 2.29
2408 2664 7.480810 ACTGAAACAACTTATGTGAGTTTTCC 58.519 34.615 11.41 4.32 42.99 3.13
2409 2665 7.339466 ACTGAAACAACTTATGTGAGTTTTCCT 59.661 33.333 11.41 0.00 42.99 3.36
2410 2666 8.740123 TGAAACAACTTATGTGAGTTTTCCTA 57.260 30.769 11.41 1.79 42.99 2.94
2411 2667 9.349713 TGAAACAACTTATGTGAGTTTTCCTAT 57.650 29.630 11.41 0.00 42.99 2.57
2414 2670 9.787435 AACAACTTATGTGAGTTTTCCTATACA 57.213 29.630 0.00 0.00 42.99 2.29
2415 2671 9.787435 ACAACTTATGTGAGTTTTCCTATACAA 57.213 29.630 0.00 0.00 41.93 2.41
2421 2677 8.691661 ATGTGAGTTTTCCTATACAACTTTGT 57.308 30.769 0.00 0.00 44.86 2.83
2422 2678 8.514330 TGTGAGTTTTCCTATACAACTTTGTT 57.486 30.769 0.00 0.00 42.35 2.83
2423 2679 8.962679 TGTGAGTTTTCCTATACAACTTTGTTT 58.037 29.630 0.00 0.00 42.35 2.83
2424 2680 9.447040 GTGAGTTTTCCTATACAACTTTGTTTC 57.553 33.333 0.00 0.00 42.35 2.78
2425 2681 9.403583 TGAGTTTTCCTATACAACTTTGTTTCT 57.596 29.630 0.00 0.00 42.35 2.52
2426 2682 9.665264 GAGTTTTCCTATACAACTTTGTTTCTG 57.335 33.333 0.00 0.00 42.35 3.02
2427 2683 9.185680 AGTTTTCCTATACAACTTTGTTTCTGT 57.814 29.630 0.00 0.00 42.35 3.41
2428 2684 9.233232 GTTTTCCTATACAACTTTGTTTCTGTG 57.767 33.333 0.00 0.00 42.35 3.66
2429 2685 8.740123 TTTCCTATACAACTTTGTTTCTGTGA 57.260 30.769 0.00 0.00 42.35 3.58
2430 2686 7.962964 TCCTATACAACTTTGTTTCTGTGAG 57.037 36.000 0.00 0.00 42.35 3.51
2431 2687 7.506114 TCCTATACAACTTTGTTTCTGTGAGT 58.494 34.615 0.00 0.00 42.35 3.41
2432 2688 7.990886 TCCTATACAACTTTGTTTCTGTGAGTT 59.009 33.333 0.00 0.00 42.35 3.01
2433 2689 9.268268 CCTATACAACTTTGTTTCTGTGAGTTA 57.732 33.333 0.00 0.00 42.35 2.24
2436 2692 6.265577 ACAACTTTGTTTCTGTGAGTTATGC 58.734 36.000 0.00 0.00 38.47 3.14
2437 2693 5.095691 ACTTTGTTTCTGTGAGTTATGCG 57.904 39.130 0.00 0.00 0.00 4.73
2438 2694 4.024048 ACTTTGTTTCTGTGAGTTATGCGG 60.024 41.667 0.00 0.00 0.00 5.69
2439 2695 1.804151 TGTTTCTGTGAGTTATGCGGC 59.196 47.619 0.00 0.00 0.00 6.53
2458 2714 6.062749 TGCGGCCATAACACCTTTATATTTA 58.937 36.000 2.24 0.00 0.00 1.40
2488 2744 2.143876 TGGGCCTTTAATTCTCCAGC 57.856 50.000 4.53 0.00 0.00 4.85
2563 2819 5.642063 AGTTCATGTAACGACCTACATTTGG 59.358 40.000 0.00 0.00 39.89 3.28
2603 2859 8.918202 TTAGATAACACTAATGGCCCTTTATG 57.082 34.615 0.00 1.18 0.00 1.90
2614 2870 5.546621 TGGCCCTTTATGTGTCTAGTATC 57.453 43.478 0.00 0.00 0.00 2.24
2644 2900 9.793259 TCTAGTTTTCAGTTTTGATTCCATAGT 57.207 29.630 0.00 0.00 32.27 2.12
2673 2930 4.503741 TGTTTTGCAGCAGATTTACTCC 57.496 40.909 0.00 0.00 0.00 3.85
2710 2967 7.642071 TGCTTCTAATTTTGCAGTCATTTTC 57.358 32.000 0.00 0.00 0.00 2.29
2747 3250 4.202430 ACTTCACTTCACGTAAAGGGGATT 60.202 41.667 0.00 0.00 30.27 3.01
2750 3253 5.240121 TCACTTCACGTAAAGGGGATTTAC 58.760 41.667 0.00 1.32 46.58 2.01
2791 3294 5.705609 AATATTTTGGTGTCGACAAGCTT 57.294 34.783 21.95 6.05 0.00 3.74
2800 3303 3.247648 GTGTCGACAAGCTTGCTTCTTAA 59.752 43.478 26.27 3.67 0.00 1.85
2802 3305 4.515191 TGTCGACAAGCTTGCTTCTTAAAT 59.485 37.500 26.27 3.03 0.00 1.40
2817 3320 7.821846 TGCTTCTTAAATTGTTTTCTTGGTTGT 59.178 29.630 0.00 0.00 0.00 3.32
2838 3341 4.142038 GTTGACTAGGCCCTTTCTTTTCA 58.858 43.478 0.00 0.00 0.00 2.69
2903 3406 9.902684 AGAGAGCAATATATTGGGAGATAAATG 57.097 33.333 23.57 0.00 38.21 2.32
2904 3407 9.896645 GAGAGCAATATATTGGGAGATAAATGA 57.103 33.333 23.57 0.00 38.21 2.57
2905 3408 9.902684 AGAGCAATATATTGGGAGATAAATGAG 57.097 33.333 23.57 0.00 38.21 2.90
2929 3434 7.275920 AGATTGTGAACCCTACATTATCAGAC 58.724 38.462 0.00 0.00 0.00 3.51
2930 3435 6.620877 TTGTGAACCCTACATTATCAGACT 57.379 37.500 0.00 0.00 0.00 3.24
2972 3480 0.677731 ATCCCGTCATTGTGCTGTGG 60.678 55.000 0.00 0.00 0.00 4.17
2977 3485 1.460743 CGTCATTGTGCTGTGGTACTG 59.539 52.381 0.00 0.00 0.00 2.74
3013 3525 5.707298 CAGTGTGTTCACCCTTTTATCTCAT 59.293 40.000 0.37 0.00 44.83 2.90
3014 3526 5.707298 AGTGTGTTCACCCTTTTATCTCATG 59.293 40.000 0.37 0.00 44.83 3.07
3015 3527 5.705441 GTGTGTTCACCCTTTTATCTCATGA 59.295 40.000 0.00 0.00 38.51 3.07
3017 3529 6.375174 TGTGTTCACCCTTTTATCTCATGATG 59.625 38.462 0.00 0.00 34.32 3.07
3019 3531 5.715439 TCACCCTTTTATCTCATGATGGT 57.285 39.130 0.00 0.00 34.32 3.55
3020 3532 5.684704 TCACCCTTTTATCTCATGATGGTC 58.315 41.667 0.00 0.00 34.32 4.02
3021 3533 5.191522 TCACCCTTTTATCTCATGATGGTCA 59.808 40.000 0.00 0.00 34.32 4.02
3022 3534 6.066690 CACCCTTTTATCTCATGATGGTCAT 58.933 40.000 0.00 0.00 37.65 3.06
3023 3535 6.548622 CACCCTTTTATCTCATGATGGTCATT 59.451 38.462 0.00 0.00 34.28 2.57
3024 3536 7.069085 CACCCTTTTATCTCATGATGGTCATTT 59.931 37.037 0.00 0.00 34.28 2.32
3025 3537 7.069085 ACCCTTTTATCTCATGATGGTCATTTG 59.931 37.037 0.00 0.00 34.28 2.32
3026 3538 7.286087 CCCTTTTATCTCATGATGGTCATTTGA 59.714 37.037 0.00 0.00 34.28 2.69
3027 3539 8.133627 CCTTTTATCTCATGATGGTCATTTGAC 58.866 37.037 0.00 1.99 34.28 3.18
3037 3549 5.183713 TGATGGTCATTTGACTCATTTCACC 59.816 40.000 10.32 0.00 44.20 4.02
3038 3550 4.728772 TGGTCATTTGACTCATTTCACCT 58.271 39.130 10.32 0.00 44.20 4.00
3043 3555 4.572985 TTTGACTCATTTCACCTTGCTG 57.427 40.909 0.00 0.00 0.00 4.41
3064 3577 6.127338 TGCTGACTGTTAGTATTCATGTAGCT 60.127 38.462 1.38 0.00 0.00 3.32
3067 3580 9.803315 CTGACTGTTAGTATTCATGTAGCTTTA 57.197 33.333 0.00 0.00 0.00 1.85
3097 3610 6.374333 GGTATTCTTGTCTCATTGTTGGCTTA 59.626 38.462 0.00 0.00 0.00 3.09
3103 3616 6.441093 TGTCTCATTGTTGGCTTATTGATC 57.559 37.500 0.00 0.00 0.00 2.92
3118 3631 7.281999 GGCTTATTGATCAACTAAGCTTTCTCT 59.718 37.037 32.83 14.31 44.26 3.10
3143 3659 2.290367 GTCGCACAAATATGCAGCCATA 59.710 45.455 0.00 0.00 46.47 2.74
3250 3773 8.450578 TGTGAATAGTCTTGAATTCTGTTTGT 57.549 30.769 7.05 0.00 34.00 2.83
3323 3846 0.394565 GTGCCAGACAGTCCTTCAGT 59.605 55.000 0.00 0.00 0.00 3.41
3584 4111 0.462375 ACCAGCGTGTGTTGTAGTCA 59.538 50.000 0.00 0.00 0.00 3.41
3600 4127 5.437946 TGTAGTCATAGTTCAGTCGATCCT 58.562 41.667 0.00 0.00 0.00 3.24
3601 4128 5.886474 TGTAGTCATAGTTCAGTCGATCCTT 59.114 40.000 0.00 0.00 0.00 3.36
3684 4427 4.774660 TGTACTACTAGCTACTGCCTCT 57.225 45.455 0.00 0.00 40.80 3.69
3687 4430 4.774660 ACTACTAGCTACTGCCTCTGTA 57.225 45.455 0.00 0.00 40.80 2.74
3689 4432 3.655615 ACTAGCTACTGCCTCTGTACT 57.344 47.619 0.00 0.00 40.80 2.73
3690 4433 3.283751 ACTAGCTACTGCCTCTGTACTG 58.716 50.000 0.00 0.00 40.80 2.74
3696 4439 5.600484 AGCTACTGCCTCTGTACTGAAATAT 59.400 40.000 3.89 0.00 40.80 1.28
3700 4443 7.366847 ACTGCCTCTGTACTGAAATATATGT 57.633 36.000 3.89 0.00 0.00 2.29
3702 4445 6.447162 TGCCTCTGTACTGAAATATATGTCG 58.553 40.000 3.89 0.00 0.00 4.35
3704 4447 6.682746 CCTCTGTACTGAAATATATGTCGCT 58.317 40.000 3.89 0.00 0.00 4.93
3705 4448 6.584184 CCTCTGTACTGAAATATATGTCGCTG 59.416 42.308 3.89 0.00 0.00 5.18
3706 4449 6.447162 TCTGTACTGAAATATATGTCGCTGG 58.553 40.000 0.00 0.00 0.00 4.85
3707 4450 6.264518 TCTGTACTGAAATATATGTCGCTGGA 59.735 38.462 0.00 0.00 0.00 3.86
3708 4451 6.447162 TGTACTGAAATATATGTCGCTGGAG 58.553 40.000 0.00 0.00 0.00 3.86
3710 4453 6.650427 ACTGAAATATATGTCGCTGGAGTA 57.350 37.500 0.00 0.00 0.00 2.59
3711 4454 6.682746 ACTGAAATATATGTCGCTGGAGTAG 58.317 40.000 0.00 0.00 0.00 2.57
3722 4465 2.839486 CTGGAGTAGCTGTGGTTCAA 57.161 50.000 0.00 0.00 0.00 2.69
3724 4467 2.037772 CTGGAGTAGCTGTGGTTCAACT 59.962 50.000 0.00 0.00 0.00 3.16
3725 4468 3.236047 TGGAGTAGCTGTGGTTCAACTA 58.764 45.455 0.00 0.00 0.00 2.24
3726 4469 3.006537 TGGAGTAGCTGTGGTTCAACTAC 59.993 47.826 0.00 0.00 42.63 2.73
3728 4471 4.522722 AGTAGCTGTGGTTCAACTACTC 57.477 45.455 5.55 0.00 46.66 2.59
3729 4472 4.153411 AGTAGCTGTGGTTCAACTACTCT 58.847 43.478 5.55 5.31 46.66 3.24
3730 4473 5.322754 AGTAGCTGTGGTTCAACTACTCTA 58.677 41.667 5.55 4.42 46.66 2.43
3731 4474 4.792521 AGCTGTGGTTCAACTACTCTAG 57.207 45.455 5.55 0.00 30.28 2.43
3732 4475 3.056465 AGCTGTGGTTCAACTACTCTAGC 60.056 47.826 5.55 6.20 30.28 3.42
3735 4478 3.057736 TGTGGTTCAACTACTCTAGCGAC 60.058 47.826 5.55 0.00 30.28 5.19
3736 4479 3.057736 GTGGTTCAACTACTCTAGCGACA 60.058 47.826 0.00 0.00 0.00 4.35
3737 4480 3.762288 TGGTTCAACTACTCTAGCGACAT 59.238 43.478 0.00 0.00 0.00 3.06
3738 4481 4.945543 TGGTTCAACTACTCTAGCGACATA 59.054 41.667 0.00 0.00 0.00 2.29
3739 4482 5.593095 TGGTTCAACTACTCTAGCGACATAT 59.407 40.000 0.00 0.00 0.00 1.78
3740 4483 6.769341 TGGTTCAACTACTCTAGCGACATATA 59.231 38.462 0.00 0.00 0.00 0.86
3741 4484 7.447545 TGGTTCAACTACTCTAGCGACATATAT 59.552 37.037 0.00 0.00 0.00 0.86
3744 4487 9.894783 TTCAACTACTCTAGCGACATATATTTC 57.105 33.333 0.00 0.00 0.00 2.17
3745 4488 9.063615 TCAACTACTCTAGCGACATATATTTCA 57.936 33.333 0.10 0.00 0.00 2.69
3747 4490 8.624367 ACTACTCTAGCGACATATATTTCAGT 57.376 34.615 0.10 0.00 0.00 3.41
3749 4492 9.976255 CTACTCTAGCGACATATATTTCAGTAC 57.024 37.037 0.10 0.00 0.00 2.73
3750 4493 7.519843 ACTCTAGCGACATATATTTCAGTACG 58.480 38.462 0.10 0.00 0.00 3.67
3752 4495 5.700722 AGCGACATATATTTCAGTACGGA 57.299 39.130 0.00 0.00 0.00 4.69
3753 4496 5.700846 AGCGACATATATTTCAGTACGGAG 58.299 41.667 0.00 0.00 0.00 4.63
3755 4498 5.399858 CGACATATATTTCAGTACGGAGGG 58.600 45.833 0.00 0.00 0.00 4.30
3757 4500 6.591750 ACATATATTTCAGTACGGAGGGAG 57.408 41.667 0.00 0.00 0.00 4.30
3763 4506 3.834489 TCAGTACGGAGGGAGTAGTAG 57.166 52.381 0.00 0.00 0.00 2.57
3785 4528 4.397417 AGAATTGATAGGCTGAAACAGTGC 59.603 41.667 0.00 0.00 33.43 4.40
3827 4620 1.214175 TGCTGGTTTGGAGAGGTTTGA 59.786 47.619 0.00 0.00 0.00 2.69
3835 4628 0.036294 GGAGAGGTTTGAAGGGGTCG 60.036 60.000 0.00 0.00 0.00 4.79
3837 4630 0.977395 AGAGGTTTGAAGGGGTCGAG 59.023 55.000 0.00 0.00 0.00 4.04
3858 4651 3.610040 GGGGGTTAAATTCCTTGCAAG 57.390 47.619 19.93 19.93 0.00 4.01
3864 4657 5.696270 GGGTTAAATTCCTTGCAAGTCAAAG 59.304 40.000 24.35 9.34 33.65 2.77
3874 4667 1.478654 GCAAGTCAAAGTCCCCCTCAA 60.479 52.381 0.00 0.00 0.00 3.02
3893 4686 3.619483 TCAATCCTACGTGCATTAAACCG 59.381 43.478 0.00 0.00 0.00 4.44
3921 4715 5.731591 AGGCTTAAACAATCTTACGCTAGT 58.268 37.500 0.00 0.00 0.00 2.57
3939 4733 1.303236 TTTCCACGTGGATGCTGGG 60.303 57.895 36.52 8.14 44.98 4.45
3943 4737 4.082523 ACGTGGATGCTGGGTCCG 62.083 66.667 0.00 0.00 38.64 4.79
3944 4738 4.838152 CGTGGATGCTGGGTCCGG 62.838 72.222 0.00 0.00 38.64 5.14
3965 4760 4.988598 CTGTGGCAGGGCGTTCGT 62.989 66.667 0.00 0.00 0.00 3.85
4009 4804 3.650281 TGTGGAACATGCTATGGATGT 57.350 42.857 0.00 0.00 45.67 3.06
4051 4846 1.879796 GCCTATTGATGAAGGGGCTCG 60.880 57.143 4.22 0.00 36.96 5.03
4063 4858 1.227263 GGGCTCGAGCTTGCGAATA 60.227 57.895 34.46 0.00 40.13 1.75
4069 4864 3.119291 CTCGAGCTTGCGAATAATCTGT 58.881 45.455 0.00 0.00 40.13 3.41
4071 4866 4.871513 TCGAGCTTGCGAATAATCTGTAT 58.128 39.130 0.00 0.00 37.35 2.29
4072 4867 5.289595 TCGAGCTTGCGAATAATCTGTATT 58.710 37.500 0.00 0.00 37.35 1.89
4076 4871 7.110765 CGAGCTTGCGAATAATCTGTATTTTTC 59.889 37.037 0.00 0.00 32.69 2.29
4077 4872 7.989826 AGCTTGCGAATAATCTGTATTTTTCT 58.010 30.769 0.00 0.00 33.41 2.52
4078 4873 8.125448 AGCTTGCGAATAATCTGTATTTTTCTC 58.875 33.333 0.00 0.00 33.41 2.87
4079 4874 8.125448 GCTTGCGAATAATCTGTATTTTTCTCT 58.875 33.333 0.00 0.00 33.41 3.10
4106 4901 5.120674 TGTGATCGAATGTGATTCAACAGAC 59.879 40.000 0.00 0.00 39.22 3.51
4135 4930 2.887151 ACAATCTTGAACCCCTCAGG 57.113 50.000 0.00 0.00 43.78 3.86
4169 4970 0.456312 GAGCTGTGGTTACCGACGAG 60.456 60.000 0.00 0.00 0.00 4.18
4170 4971 1.177256 AGCTGTGGTTACCGACGAGT 61.177 55.000 0.00 0.00 0.00 4.18
4171 4972 1.007336 GCTGTGGTTACCGACGAGTG 61.007 60.000 0.00 0.00 0.00 3.51
4172 4973 1.007038 TGTGGTTACCGACGAGTGC 60.007 57.895 0.00 0.00 0.00 4.40
4173 4974 1.735559 GTGGTTACCGACGAGTGCC 60.736 63.158 0.00 1.31 0.00 5.01
4174 4975 2.201708 TGGTTACCGACGAGTGCCA 61.202 57.895 0.00 3.82 0.00 4.92
4175 4976 1.445582 GGTTACCGACGAGTGCCAG 60.446 63.158 0.00 0.00 0.00 4.85
4176 4977 2.092882 GTTACCGACGAGTGCCAGC 61.093 63.158 0.00 0.00 0.00 4.85
4177 4978 2.566570 TTACCGACGAGTGCCAGCA 61.567 57.895 0.00 0.00 0.00 4.41
4178 4979 2.486636 TTACCGACGAGTGCCAGCAG 62.487 60.000 0.00 0.00 0.00 4.24
4180 4981 4.731612 CGACGAGTGCCAGCAGCT 62.732 66.667 0.00 0.00 44.23 4.24
4181 4982 2.358003 GACGAGTGCCAGCAGCTT 60.358 61.111 0.00 0.00 44.23 3.74
4182 4983 2.667536 ACGAGTGCCAGCAGCTTG 60.668 61.111 0.00 0.00 44.23 4.01
4183 4984 2.357881 CGAGTGCCAGCAGCTTGA 60.358 61.111 0.00 0.00 44.23 3.02
4184 4985 2.389020 CGAGTGCCAGCAGCTTGAG 61.389 63.158 0.00 0.00 44.23 3.02
4185 4986 2.672307 AGTGCCAGCAGCTTGAGC 60.672 61.111 0.00 0.00 44.23 4.26
4186 4987 3.745803 GTGCCAGCAGCTTGAGCC 61.746 66.667 0.00 0.00 44.23 4.70
4187 4988 3.962694 TGCCAGCAGCTTGAGCCT 61.963 61.111 0.00 0.00 44.23 4.58
4188 4989 3.441290 GCCAGCAGCTTGAGCCTG 61.441 66.667 0.00 1.19 43.38 4.85
4189 4990 2.033757 CCAGCAGCTTGAGCCTGT 59.966 61.111 0.00 0.00 43.38 4.00
4190 4991 1.602888 CCAGCAGCTTGAGCCTGTT 60.603 57.895 0.00 0.00 43.38 3.16
4191 4992 1.584380 CCAGCAGCTTGAGCCTGTTC 61.584 60.000 0.00 0.00 43.38 3.18
4192 4993 1.670406 AGCAGCTTGAGCCTGTTCG 60.670 57.895 0.00 0.00 43.38 3.95
4193 4994 2.684843 GCAGCTTGAGCCTGTTCGG 61.685 63.158 0.00 0.00 43.38 4.30
4202 5003 3.423154 CCTGTTCGGCAAGGCGAC 61.423 66.667 18.47 13.49 0.00 5.19
4247 5048 3.430042 AAATGGAGTCACACATGAGCT 57.570 42.857 0.00 0.00 34.75 4.09
4252 5053 3.244665 TGGAGTCACACATGAGCTTGATT 60.245 43.478 0.00 0.00 34.75 2.57
4253 5054 3.126514 GGAGTCACACATGAGCTTGATTG 59.873 47.826 0.00 0.00 34.75 2.67
4254 5055 3.748083 AGTCACACATGAGCTTGATTGT 58.252 40.909 0.00 0.00 34.75 2.71
4255 5056 3.750130 AGTCACACATGAGCTTGATTGTC 59.250 43.478 0.00 0.00 34.75 3.18
4256 5057 2.738314 TCACACATGAGCTTGATTGTCG 59.262 45.455 0.00 0.00 0.00 4.35
4258 5059 1.736126 CACATGAGCTTGATTGTCGCT 59.264 47.619 0.00 0.00 36.57 4.93
4262 5063 2.493035 TGAGCTTGATTGTCGCTTGAA 58.507 42.857 0.00 0.00 33.47 2.69
4263 5064 2.877786 TGAGCTTGATTGTCGCTTGAAA 59.122 40.909 0.00 0.00 33.47 2.69
4264 5065 3.314913 TGAGCTTGATTGTCGCTTGAAAA 59.685 39.130 0.00 0.00 33.47 2.29
4265 5066 4.202000 TGAGCTTGATTGTCGCTTGAAAAA 60.202 37.500 0.00 0.00 33.47 1.94
4267 5068 3.121696 GCTTGATTGTCGCTTGAAAAACG 60.122 43.478 0.00 0.00 0.00 3.60
4270 5071 4.032355 TGATTGTCGCTTGAAAAACGTTC 58.968 39.130 0.00 0.00 0.00 3.95
4272 5073 3.750639 TGTCGCTTGAAAAACGTTCTT 57.249 38.095 0.00 0.00 0.00 2.52
4273 5074 4.861389 TGTCGCTTGAAAAACGTTCTTA 57.139 36.364 0.00 0.00 0.00 2.10
4276 5152 7.124347 TGTCGCTTGAAAAACGTTCTTATAT 57.876 32.000 0.00 0.00 0.00 0.86
4278 5154 8.710551 TGTCGCTTGAAAAACGTTCTTATATTA 58.289 29.630 0.00 0.00 0.00 0.98
4282 5158 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
4296 5172 4.757773 TGGGACAGAGGGAGTACG 57.242 61.111 0.00 0.00 0.00 3.67
4297 5173 1.772308 TGGGACAGAGGGAGTACGT 59.228 57.895 0.00 0.00 0.00 3.57
4298 5174 0.994247 TGGGACAGAGGGAGTACGTA 59.006 55.000 0.00 0.00 0.00 3.57
4299 5175 1.355381 TGGGACAGAGGGAGTACGTAA 59.645 52.381 0.00 0.00 0.00 3.18
4300 5176 2.024655 TGGGACAGAGGGAGTACGTAAT 60.025 50.000 0.00 0.00 0.00 1.89
4346 5227 8.042944 AGTAAACGACCAAGTTAAAAAGAACA 57.957 30.769 0.00 0.00 33.41 3.18
4349 5230 6.746745 ACGACCAAGTTAAAAAGAACAAGA 57.253 33.333 0.00 0.00 0.00 3.02
4363 5244 6.732896 AAGAACAAGACCTCTAGAACAAGA 57.267 37.500 0.00 0.00 0.00 3.02
4401 5390 7.343316 CCTGGATTTAGTACTCCCTCCATATAG 59.657 44.444 16.36 8.25 32.66 1.31
4402 5391 8.008104 TGGATTTAGTACTCCCTCCATATAGA 57.992 38.462 13.46 0.00 0.00 1.98
4411 5400 6.595682 ACTCCCTCCATATAGACATGTTTTG 58.404 40.000 0.00 0.00 0.00 2.44
4441 5444 4.137116 TGGTATGCATGTAGTCCAGAAC 57.863 45.455 10.16 0.00 0.00 3.01
4451 5454 6.630413 GCATGTAGTCCAGAACATCTTAGGAA 60.630 42.308 0.00 0.00 34.12 3.36
4500 5503 7.866729 TGATATACACAACATCAACAAAACGT 58.133 30.769 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.325119 GGAAGTTTAGGGTTCCTCTGTTC 58.675 47.826 0.00 0.00 39.42 3.18
1 2 4.368565 GGAAGTTTAGGGTTCCTCTGTT 57.631 45.455 0.00 0.00 39.42 3.16
23 24 0.908910 ACACCACAGACCACACAAGA 59.091 50.000 0.00 0.00 0.00 3.02
27 28 1.160329 GCTCACACCACAGACCACAC 61.160 60.000 0.00 0.00 0.00 3.82
40 41 1.723608 CGTGCAAGGTTTGGCTCACA 61.724 55.000 0.00 0.00 0.00 3.58
160 170 1.635663 CTGGTTAACCTCGCAAGCCG 61.636 60.000 24.78 0.00 36.82 5.52
179 189 6.601217 GGATATGCCCAGATTTTTCTATCCTC 59.399 42.308 0.00 0.00 33.61 3.71
193 203 2.365617 AGTTCGTAGTGGATATGCCCAG 59.634 50.000 0.00 0.00 36.78 4.45
196 206 4.579454 TGTAGTTCGTAGTGGATATGCC 57.421 45.455 0.00 0.00 37.10 4.40
204 214 6.034683 GCCTGATAAAGTTGTAGTTCGTAGTG 59.965 42.308 0.00 0.00 0.00 2.74
205 215 6.098017 GCCTGATAAAGTTGTAGTTCGTAGT 58.902 40.000 0.00 0.00 0.00 2.73
217 227 7.054491 AGTGATGTTTTTGCCTGATAAAGTT 57.946 32.000 0.00 0.00 0.00 2.66
228 398 5.090652 TGTTCGTCTAGTGATGTTTTTGC 57.909 39.130 0.00 0.00 0.00 3.68
404 575 1.150567 CTCAGGCTATGCTGTGACGC 61.151 60.000 0.00 0.00 0.00 5.19
408 579 0.107800 ACTGCTCAGGCTATGCTGTG 60.108 55.000 17.68 8.94 37.46 3.66
436 607 2.103538 GGAGTCGCGCGGTGATTA 59.896 61.111 31.69 6.17 0.00 1.75
475 646 0.956410 CGGGGTGGTATGTTTTGCGA 60.956 55.000 0.00 0.00 0.00 5.10
476 647 1.504446 CGGGGTGGTATGTTTTGCG 59.496 57.895 0.00 0.00 0.00 4.85
506 682 2.156310 GTGTGTCCCGTCGTTTATGTTC 59.844 50.000 0.00 0.00 0.00 3.18
511 687 1.007502 CGGTGTGTCCCGTCGTTTA 60.008 57.895 0.00 0.00 43.07 2.01
576 752 0.248012 TCTCCTTGGTTTCGCGCATA 59.752 50.000 8.75 0.00 0.00 3.14
580 756 1.741770 CCCTCTCCTTGGTTTCGCG 60.742 63.158 0.00 0.00 0.00 5.87
747 924 2.105649 GCTTCCCCCTCTTCTCCAATAG 59.894 54.545 0.00 0.00 0.00 1.73
748 925 2.127708 GCTTCCCCCTCTTCTCCAATA 58.872 52.381 0.00 0.00 0.00 1.90
749 926 0.922626 GCTTCCCCCTCTTCTCCAAT 59.077 55.000 0.00 0.00 0.00 3.16
750 927 1.553690 CGCTTCCCCCTCTTCTCCAA 61.554 60.000 0.00 0.00 0.00 3.53
751 928 1.990060 CGCTTCCCCCTCTTCTCCA 60.990 63.158 0.00 0.00 0.00 3.86
752 929 2.736826 CCGCTTCCCCCTCTTCTCC 61.737 68.421 0.00 0.00 0.00 3.71
753 930 2.904131 CCGCTTCCCCCTCTTCTC 59.096 66.667 0.00 0.00 0.00 2.87
754 931 3.403558 GCCGCTTCCCCCTCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
755 932 4.491409 GGCCGCTTCCCCCTCTTC 62.491 72.222 0.00 0.00 0.00 2.87
766 944 2.391724 TTTGGTCTCTTTCGGCCGCT 62.392 55.000 23.51 0.00 0.00 5.52
805 986 2.518709 TAACCGTTGGGCTCGGGTT 61.519 57.895 10.83 10.83 46.79 4.11
810 991 1.092348 GGAATGTAACCGTTGGGCTC 58.908 55.000 0.00 0.00 36.48 4.70
837 1018 1.469595 CCGTCCGTTCTGGCGTATAAA 60.470 52.381 0.00 0.00 37.80 1.40
857 1038 2.335712 CCGACTGGCCCAAAAGAGC 61.336 63.158 0.00 0.00 0.00 4.09
989 1171 4.101790 CGGCCATTTTCGCTGCGT 62.102 61.111 22.48 0.00 0.00 5.24
1503 1685 0.825010 TATCTACGGCCCCGAACTCC 60.825 60.000 14.44 0.00 42.83 3.85
1518 1700 2.505405 TCCGCTAGCAAGTCGATATCT 58.495 47.619 16.45 0.00 0.00 1.98
1521 1703 3.067601 TGAATTCCGCTAGCAAGTCGATA 59.932 43.478 16.45 0.00 0.00 2.92
1522 1704 2.159099 TGAATTCCGCTAGCAAGTCGAT 60.159 45.455 16.45 0.00 0.00 3.59
1543 1725 1.227263 CGTCCTCGGAATCGCCAAT 60.227 57.895 0.00 0.00 35.94 3.16
1551 1733 1.248785 CCTCCTTGTCGTCCTCGGAA 61.249 60.000 0.00 0.00 37.69 4.30
1586 1768 2.484287 ATTGGGGTGGAAGCTGACGG 62.484 60.000 0.00 0.00 0.00 4.79
1655 1837 1.535462 GCGGTAACAACACTTCAGCAT 59.465 47.619 0.00 0.00 0.00 3.79
1658 1840 1.263217 GTGGCGGTAACAACACTTCAG 59.737 52.381 0.00 0.00 39.14 3.02
1684 1866 1.210967 CTCCACCTCCTCTACGTCTCT 59.789 57.143 0.00 0.00 0.00 3.10
1686 1868 0.256464 CCTCCACCTCCTCTACGTCT 59.744 60.000 0.00 0.00 0.00 4.18
1688 1870 0.256464 CTCCTCCACCTCCTCTACGT 59.744 60.000 0.00 0.00 0.00 3.57
1692 1874 3.114390 CCCTCCTCCACCTCCTCT 58.886 66.667 0.00 0.00 0.00 3.69
1710 1892 1.308069 CCTCCAATTGGTCACCGCTG 61.308 60.000 23.76 5.68 36.34 5.18
1733 1915 2.288395 CCCATGAAGTCAGCAAACCAAC 60.288 50.000 0.00 0.00 0.00 3.77
1734 1916 1.962807 CCCATGAAGTCAGCAAACCAA 59.037 47.619 0.00 0.00 0.00 3.67
1735 1917 1.619654 CCCATGAAGTCAGCAAACCA 58.380 50.000 0.00 0.00 0.00 3.67
1776 1961 5.622233 CGTTGTGTCTAGATTCACCATCTCA 60.622 44.000 10.15 0.00 41.80 3.27
1981 2171 8.070171 ACAACATTAGAAACTCGAAGTCAATTG 58.930 33.333 0.00 0.00 0.00 2.32
1982 2172 8.154649 ACAACATTAGAAACTCGAAGTCAATT 57.845 30.769 0.00 0.00 0.00 2.32
2052 2242 9.138596 TGTGGACTATAGCAATATGTTGTAGTA 57.861 33.333 4.00 0.00 37.65 1.82
2053 2243 8.018537 TGTGGACTATAGCAATATGTTGTAGT 57.981 34.615 4.00 4.20 37.65 2.73
2054 2244 8.360390 TCTGTGGACTATAGCAATATGTTGTAG 58.640 37.037 4.00 1.16 37.65 2.74
2056 2246 7.124573 TCTGTGGACTATAGCAATATGTTGT 57.875 36.000 4.00 0.00 37.65 3.32
2057 2247 7.495606 TGTTCTGTGGACTATAGCAATATGTTG 59.504 37.037 0.00 0.00 38.39 3.33
2060 2271 7.874528 TCATGTTCTGTGGACTATAGCAATATG 59.125 37.037 0.00 0.00 0.00 1.78
2063 2274 6.239217 TCATGTTCTGTGGACTATAGCAAT 57.761 37.500 0.00 0.00 0.00 3.56
2066 2277 6.367422 GCTTATCATGTTCTGTGGACTATAGC 59.633 42.308 0.00 0.00 0.00 2.97
2078 2289 7.392673 ACTTCTGAATTGTGCTTATCATGTTCT 59.607 33.333 0.00 0.00 0.00 3.01
2113 2324 7.066284 ACAGGTTTCACTCATTGCAATAGATAC 59.934 37.037 12.53 11.97 0.00 2.24
2124 2338 7.595819 TTCCAATAAACAGGTTTCACTCATT 57.404 32.000 0.00 0.00 34.23 2.57
2145 2359 6.369065 CACATAGTCCTCTACTTGTGTTTTCC 59.631 42.308 0.00 0.00 39.62 3.13
2146 2360 6.128526 GCACATAGTCCTCTACTTGTGTTTTC 60.129 42.308 15.33 3.49 42.68 2.29
2168 2383 1.604604 TTTACAGCTCCTGTTGGCAC 58.395 50.000 2.93 0.00 42.59 5.01
2177 2392 6.739112 AGTTTCAAACAAGATTTACAGCTCC 58.261 36.000 2.41 0.00 0.00 4.70
2209 2424 6.905609 GCGCCTAAAAGAAAGTATGAATACAC 59.094 38.462 0.00 0.00 35.74 2.90
2227 2446 1.227263 GAGCTCGGATTGCGCCTAA 60.227 57.895 4.18 0.00 35.28 2.69
2228 2447 2.417516 GAGCTCGGATTGCGCCTA 59.582 61.111 4.18 0.00 35.28 3.93
2293 2512 7.217200 ACTTAACCGCTTCACATATGATACAT 58.783 34.615 10.38 0.00 33.85 2.29
2317 2536 6.255215 TGAAACAATTTCGTTGAACTCTGAC 58.745 36.000 0.00 0.00 42.55 3.51
2368 2587 6.942532 TGTTTCAGTAATTGACTTGCTCTT 57.057 33.333 0.00 0.00 35.64 2.85
2403 2659 9.179909 TCACAGAAACAAAGTTGTATAGGAAAA 57.820 29.630 0.00 0.00 41.31 2.29
2404 2660 8.740123 TCACAGAAACAAAGTTGTATAGGAAA 57.260 30.769 0.00 0.00 41.31 3.13
2405 2661 7.990886 ACTCACAGAAACAAAGTTGTATAGGAA 59.009 33.333 0.00 0.00 41.31 3.36
2406 2662 7.506114 ACTCACAGAAACAAAGTTGTATAGGA 58.494 34.615 0.00 0.00 41.31 2.94
2407 2663 7.730364 ACTCACAGAAACAAAGTTGTATAGG 57.270 36.000 0.00 0.00 41.31 2.57
2410 2666 8.076178 GCATAACTCACAGAAACAAAGTTGTAT 58.924 33.333 0.00 0.00 41.31 2.29
2411 2667 7.414436 GCATAACTCACAGAAACAAAGTTGTA 58.586 34.615 0.00 0.00 41.31 2.41
2412 2668 6.265577 GCATAACTCACAGAAACAAAGTTGT 58.734 36.000 0.00 0.00 44.72 3.32
2413 2669 5.396362 CGCATAACTCACAGAAACAAAGTTG 59.604 40.000 0.00 0.00 32.71 3.16
2414 2670 5.505654 CCGCATAACTCACAGAAACAAAGTT 60.506 40.000 0.00 0.00 34.70 2.66
2415 2671 4.024048 CCGCATAACTCACAGAAACAAAGT 60.024 41.667 0.00 0.00 0.00 2.66
2416 2672 4.466828 CCGCATAACTCACAGAAACAAAG 58.533 43.478 0.00 0.00 0.00 2.77
2417 2673 3.304391 GCCGCATAACTCACAGAAACAAA 60.304 43.478 0.00 0.00 0.00 2.83
2418 2674 2.225491 GCCGCATAACTCACAGAAACAA 59.775 45.455 0.00 0.00 0.00 2.83
2419 2675 1.804151 GCCGCATAACTCACAGAAACA 59.196 47.619 0.00 0.00 0.00 2.83
2420 2676 1.130561 GGCCGCATAACTCACAGAAAC 59.869 52.381 0.00 0.00 0.00 2.78
2421 2677 1.271108 TGGCCGCATAACTCACAGAAA 60.271 47.619 0.00 0.00 0.00 2.52
2422 2678 0.323302 TGGCCGCATAACTCACAGAA 59.677 50.000 0.00 0.00 0.00 3.02
2423 2679 0.541392 ATGGCCGCATAACTCACAGA 59.459 50.000 0.00 0.00 0.00 3.41
2424 2680 2.238942 TATGGCCGCATAACTCACAG 57.761 50.000 0.00 0.00 0.00 3.66
2425 2681 2.285083 GTTATGGCCGCATAACTCACA 58.715 47.619 15.48 0.00 42.00 3.58
2426 2682 2.031683 GTGTTATGGCCGCATAACTCAC 59.968 50.000 20.72 11.74 44.23 3.51
2427 2683 2.285083 GTGTTATGGCCGCATAACTCA 58.715 47.619 20.72 5.25 44.23 3.41
2428 2684 1.602377 GGTGTTATGGCCGCATAACTC 59.398 52.381 20.72 17.78 44.23 3.01
2429 2685 1.211949 AGGTGTTATGGCCGCATAACT 59.788 47.619 20.72 2.98 44.23 2.24
2430 2686 1.675552 AGGTGTTATGGCCGCATAAC 58.324 50.000 15.77 15.77 44.20 1.89
2431 2687 2.428544 AAGGTGTTATGGCCGCATAA 57.571 45.000 0.00 0.00 0.00 1.90
2432 2688 2.428544 AAAGGTGTTATGGCCGCATA 57.571 45.000 0.00 0.00 0.00 3.14
2433 2689 2.428544 TAAAGGTGTTATGGCCGCAT 57.571 45.000 0.00 0.00 0.00 4.73
2434 2690 2.428544 ATAAAGGTGTTATGGCCGCA 57.571 45.000 0.00 0.00 0.00 5.69
2435 2691 5.447624 AAATATAAAGGTGTTATGGCCGC 57.552 39.130 0.00 0.00 0.00 6.53
2436 2692 7.739498 ACTAAATATAAAGGTGTTATGGCCG 57.261 36.000 0.00 0.00 0.00 6.13
2458 2714 9.355916 GAGAATTAAAGGCCCATTAGAATTACT 57.644 33.333 0.00 0.36 0.00 2.24
2563 2819 7.672239 AGTGTTATCTAATACTCCCTCTGATCC 59.328 40.741 0.00 0.00 33.16 3.36
2603 2859 9.562583 CTGAAAACTAGAGTTGATACTAGACAC 57.437 37.037 0.00 0.00 39.25 3.67
2614 2870 8.405531 TGGAATCAAAACTGAAAACTAGAGTTG 58.594 33.333 0.00 0.00 38.44 3.16
2673 2930 9.107367 CAAAATTAGAAGCAGAAAGAAACTACG 57.893 33.333 0.00 0.00 0.00 3.51
2710 2967 8.015658 CGTGAAGTGAAGTAAAAATAAGAAGGG 58.984 37.037 0.00 0.00 0.00 3.95
2791 3294 7.821846 ACAACCAAGAAAACAATTTAAGAAGCA 59.178 29.630 0.00 0.00 0.00 3.91
2800 3303 7.264947 CCTAGTCAACAACCAAGAAAACAATT 58.735 34.615 0.00 0.00 0.00 2.32
2802 3305 5.393678 GCCTAGTCAACAACCAAGAAAACAA 60.394 40.000 0.00 0.00 0.00 2.83
2817 3320 4.447138 TGAAAAGAAAGGGCCTAGTCAA 57.553 40.909 6.41 0.00 0.00 3.18
2838 3341 9.216117 GTGACACAGAAATACAAGTAAAGGTAT 57.784 33.333 0.00 0.00 0.00 2.73
2903 3406 7.439655 GTCTGATAATGTAGGGTTCACAATCTC 59.560 40.741 0.00 0.00 0.00 2.75
2904 3407 7.126421 AGTCTGATAATGTAGGGTTCACAATCT 59.874 37.037 0.00 0.00 0.00 2.40
2905 3408 7.225538 CAGTCTGATAATGTAGGGTTCACAATC 59.774 40.741 0.00 0.00 0.00 2.67
2972 3480 5.047235 ACACACTGTATCCTTCTTCCAGTAC 60.047 44.000 0.00 0.00 34.77 2.73
2977 3485 4.691216 GTGAACACACTGTATCCTTCTTCC 59.309 45.833 0.00 0.00 0.00 3.46
3013 3525 5.183713 GGTGAAATGAGTCAAATGACCATCA 59.816 40.000 9.84 8.61 45.85 3.07
3014 3526 5.416952 AGGTGAAATGAGTCAAATGACCATC 59.583 40.000 15.94 3.31 45.85 3.51
3015 3527 5.327732 AGGTGAAATGAGTCAAATGACCAT 58.672 37.500 15.94 9.96 45.85 3.55
3017 3529 5.464168 CAAGGTGAAATGAGTCAAATGACC 58.536 41.667 9.84 8.51 45.85 4.02
3019 3531 4.828939 AGCAAGGTGAAATGAGTCAAATGA 59.171 37.500 0.00 0.00 0.00 2.57
3020 3532 4.921515 CAGCAAGGTGAAATGAGTCAAATG 59.078 41.667 0.00 0.00 0.00 2.32
3021 3533 4.828939 TCAGCAAGGTGAAATGAGTCAAAT 59.171 37.500 0.00 0.00 0.00 2.32
3022 3534 4.036734 GTCAGCAAGGTGAAATGAGTCAAA 59.963 41.667 3.23 0.00 0.00 2.69
3023 3535 3.565482 GTCAGCAAGGTGAAATGAGTCAA 59.435 43.478 3.23 0.00 0.00 3.18
3024 3536 3.141398 GTCAGCAAGGTGAAATGAGTCA 58.859 45.455 3.23 0.00 0.00 3.41
3025 3537 3.188048 CAGTCAGCAAGGTGAAATGAGTC 59.812 47.826 3.23 0.00 0.00 3.36
3026 3538 3.144506 CAGTCAGCAAGGTGAAATGAGT 58.855 45.455 3.23 0.00 0.00 3.41
3027 3539 3.144506 ACAGTCAGCAAGGTGAAATGAG 58.855 45.455 17.39 5.08 0.00 2.90
3037 3549 6.974932 ACATGAATACTAACAGTCAGCAAG 57.025 37.500 0.00 0.00 0.00 4.01
3038 3550 6.535150 GCTACATGAATACTAACAGTCAGCAA 59.465 38.462 0.00 0.00 0.00 3.91
3043 3555 9.250624 CCTAAAGCTACATGAATACTAACAGTC 57.749 37.037 0.00 0.00 0.00 3.51
3064 3577 7.942341 ACAATGAGACAAGAATACCAACCTAAA 59.058 33.333 0.00 0.00 0.00 1.85
3067 3580 5.880901 ACAATGAGACAAGAATACCAACCT 58.119 37.500 0.00 0.00 0.00 3.50
3097 3610 7.449704 ACCAAAGAGAAAGCTTAGTTGATCAAT 59.550 33.333 12.12 3.70 0.00 2.57
3103 3616 4.611581 GCGACCAAAGAGAAAGCTTAGTTG 60.612 45.833 0.00 0.15 0.00 3.16
3179 3695 9.047371 TGACAATAAACGATAAACAGAGACAAA 57.953 29.630 0.00 0.00 0.00 2.83
3232 3755 3.815401 CGGGACAAACAGAATTCAAGACT 59.185 43.478 8.44 0.00 0.00 3.24
3250 3773 3.202548 GGTAGATGACTGACCGGGA 57.797 57.895 6.32 0.00 0.00 5.14
3609 4136 4.002906 TGTCTTGTTATCTGCCGTTTCT 57.997 40.909 0.00 0.00 0.00 2.52
3679 4422 5.346281 GCGACATATATTTCAGTACAGAGGC 59.654 44.000 0.00 0.00 0.00 4.70
3684 4427 6.040504 ACTCCAGCGACATATATTTCAGTACA 59.959 38.462 0.00 0.00 0.00 2.90
3687 4430 5.537300 ACTCCAGCGACATATATTTCAGT 57.463 39.130 0.10 0.00 0.00 3.41
3689 4432 5.470368 GCTACTCCAGCGACATATATTTCA 58.530 41.667 0.10 0.00 41.37 2.69
3704 4447 2.047061 AGTTGAACCACAGCTACTCCA 58.953 47.619 0.00 0.00 38.25 3.86
3705 4448 2.841442 AGTTGAACCACAGCTACTCC 57.159 50.000 0.00 0.00 38.25 3.85
3710 4453 3.056465 GCTAGAGTAGTTGAACCACAGCT 60.056 47.826 0.00 0.00 42.42 4.24
3711 4454 3.254892 GCTAGAGTAGTTGAACCACAGC 58.745 50.000 0.00 0.00 0.00 4.40
3712 4455 3.190744 TCGCTAGAGTAGTTGAACCACAG 59.809 47.826 0.00 0.00 0.00 3.66
3713 4456 3.057736 GTCGCTAGAGTAGTTGAACCACA 60.058 47.826 0.00 0.00 0.00 4.17
3714 4457 3.057736 TGTCGCTAGAGTAGTTGAACCAC 60.058 47.826 0.00 0.00 0.00 4.16
3715 4458 3.151554 TGTCGCTAGAGTAGTTGAACCA 58.848 45.455 0.00 0.00 0.00 3.67
3716 4459 3.844577 TGTCGCTAGAGTAGTTGAACC 57.155 47.619 0.00 0.00 0.00 3.62
3717 4460 9.680315 AAATATATGTCGCTAGAGTAGTTGAAC 57.320 33.333 0.00 0.00 0.00 3.18
3720 4463 9.335891 CTGAAATATATGTCGCTAGAGTAGTTG 57.664 37.037 0.00 0.00 0.00 3.16
3722 4465 8.624367 ACTGAAATATATGTCGCTAGAGTAGT 57.376 34.615 0.00 0.00 0.00 2.73
3724 4467 8.654215 CGTACTGAAATATATGTCGCTAGAGTA 58.346 37.037 0.00 0.00 0.00 2.59
3725 4468 7.361031 CCGTACTGAAATATATGTCGCTAGAGT 60.361 40.741 0.00 0.00 0.00 3.24
3726 4469 6.962116 CCGTACTGAAATATATGTCGCTAGAG 59.038 42.308 0.00 0.00 0.00 2.43
3727 4470 6.652062 TCCGTACTGAAATATATGTCGCTAGA 59.348 38.462 0.00 0.00 0.00 2.43
3728 4471 6.839033 TCCGTACTGAAATATATGTCGCTAG 58.161 40.000 0.00 0.00 0.00 3.42
3729 4472 6.128090 CCTCCGTACTGAAATATATGTCGCTA 60.128 42.308 0.00 0.00 0.00 4.26
3730 4473 5.335740 CCTCCGTACTGAAATATATGTCGCT 60.336 44.000 0.00 0.00 0.00 4.93
3731 4474 4.857588 CCTCCGTACTGAAATATATGTCGC 59.142 45.833 0.00 0.00 0.00 5.19
3732 4475 5.182570 TCCCTCCGTACTGAAATATATGTCG 59.817 44.000 0.00 0.00 0.00 4.35
3735 4478 6.591750 ACTCCCTCCGTACTGAAATATATG 57.408 41.667 0.00 0.00 0.00 1.78
3736 4479 7.468496 ACTACTCCCTCCGTACTGAAATATAT 58.532 38.462 0.00 0.00 0.00 0.86
3737 4480 6.845908 ACTACTCCCTCCGTACTGAAATATA 58.154 40.000 0.00 0.00 0.00 0.86
3738 4481 5.703310 ACTACTCCCTCCGTACTGAAATAT 58.297 41.667 0.00 0.00 0.00 1.28
3739 4482 5.121380 ACTACTCCCTCCGTACTGAAATA 57.879 43.478 0.00 0.00 0.00 1.40
3740 4483 3.978610 ACTACTCCCTCCGTACTGAAAT 58.021 45.455 0.00 0.00 0.00 2.17
3741 4484 3.446442 ACTACTCCCTCCGTACTGAAA 57.554 47.619 0.00 0.00 0.00 2.69
3744 4487 3.834489 TCTACTACTCCCTCCGTACTG 57.166 52.381 0.00 0.00 0.00 2.74
3745 4488 5.104193 TCAATTCTACTACTCCCTCCGTACT 60.104 44.000 0.00 0.00 0.00 2.73
3747 4490 5.378230 TCAATTCTACTACTCCCTCCGTA 57.622 43.478 0.00 0.00 0.00 4.02
3749 4492 5.416326 CCTATCAATTCTACTACTCCCTCCG 59.584 48.000 0.00 0.00 0.00 4.63
3750 4493 5.186215 GCCTATCAATTCTACTACTCCCTCC 59.814 48.000 0.00 0.00 0.00 4.30
3752 4495 5.777732 CAGCCTATCAATTCTACTACTCCCT 59.222 44.000 0.00 0.00 0.00 4.20
3753 4496 5.775701 TCAGCCTATCAATTCTACTACTCCC 59.224 44.000 0.00 0.00 0.00 4.30
3755 4498 8.198109 TGTTTCAGCCTATCAATTCTACTACTC 58.802 37.037 0.00 0.00 0.00 2.59
3757 4500 7.982354 ACTGTTTCAGCCTATCAATTCTACTAC 59.018 37.037 0.00 0.00 34.37 2.73
3763 4506 4.397417 AGCACTGTTTCAGCCTATCAATTC 59.603 41.667 0.00 0.00 34.37 2.17
3785 4528 9.973246 CAGCAAACTAAAGTAATATACACACAG 57.027 33.333 0.00 0.00 0.00 3.66
3842 4635 6.420903 GGACTTTGACTTGCAAGGAATTTAAC 59.579 38.462 29.18 13.78 37.87 2.01
3858 4651 1.636003 AGGATTGAGGGGGACTTTGAC 59.364 52.381 0.00 0.00 0.00 3.18
3864 4657 0.464452 CACGTAGGATTGAGGGGGAC 59.536 60.000 0.00 0.00 0.00 4.46
3874 4667 3.530265 TCGGTTTAATGCACGTAGGAT 57.470 42.857 0.00 0.00 0.00 3.24
3893 4686 5.567915 GCGTAAGATTGTTTAAGCCTTGTTC 59.432 40.000 0.00 0.00 43.02 3.18
3948 4742 4.988598 ACGAACGCCCTGCCACAG 62.989 66.667 0.00 0.00 0.00 3.66
3949 4743 4.555709 AACGAACGCCCTGCCACA 62.556 61.111 0.00 0.00 0.00 4.17
3950 4744 4.025401 CAACGAACGCCCTGCCAC 62.025 66.667 0.00 0.00 0.00 5.01
3975 4770 3.114616 CACAGCAGTTCGAGGCCG 61.115 66.667 0.00 0.00 37.07 6.13
3976 4771 2.731691 TTCCACAGCAGTTCGAGGCC 62.732 60.000 0.00 0.00 0.00 5.19
3977 4772 1.301716 TTCCACAGCAGTTCGAGGC 60.302 57.895 0.00 0.00 0.00 4.70
3979 4774 1.462283 CATGTTCCACAGCAGTTCGAG 59.538 52.381 0.00 0.00 0.00 4.04
3982 4777 1.242076 AGCATGTTCCACAGCAGTTC 58.758 50.000 0.00 0.00 0.00 3.01
3984 4779 2.362736 CATAGCATGTTCCACAGCAGT 58.637 47.619 0.00 0.00 0.00 4.40
3985 4780 1.674441 CCATAGCATGTTCCACAGCAG 59.326 52.381 0.00 0.00 0.00 4.24
3986 4781 1.281577 TCCATAGCATGTTCCACAGCA 59.718 47.619 0.00 0.00 0.00 4.41
3987 4782 2.042686 TCCATAGCATGTTCCACAGC 57.957 50.000 0.00 0.00 0.00 4.40
3988 4783 3.314357 CACATCCATAGCATGTTCCACAG 59.686 47.826 0.00 0.00 31.83 3.66
4040 4835 2.665000 CAAGCTCGAGCCCCTTCA 59.335 61.111 32.94 0.00 43.38 3.02
4042 4837 4.767255 CGCAAGCTCGAGCCCCTT 62.767 66.667 32.94 18.67 43.38 3.95
4051 4846 8.125448 AGAAAAATACAGATTATTCGCAAGCTC 58.875 33.333 0.00 0.00 37.18 4.09
4063 4858 8.877779 CGATCACAAGAGAGAAAAATACAGATT 58.122 33.333 0.00 0.00 0.00 2.40
4069 4864 8.659491 CACATTCGATCACAAGAGAGAAAAATA 58.341 33.333 0.00 0.00 30.50 1.40
4071 4866 6.705825 TCACATTCGATCACAAGAGAGAAAAA 59.294 34.615 0.00 0.00 30.50 1.94
4072 4867 6.223120 TCACATTCGATCACAAGAGAGAAAA 58.777 36.000 0.00 0.00 30.50 2.29
4076 4871 5.809051 TGAATCACATTCGATCACAAGAGAG 59.191 40.000 0.00 0.00 42.15 3.20
4077 4872 5.723295 TGAATCACATTCGATCACAAGAGA 58.277 37.500 0.00 0.00 42.15 3.10
4078 4873 6.128472 TGTTGAATCACATTCGATCACAAGAG 60.128 38.462 0.00 0.00 42.15 2.85
4079 4874 5.700373 TGTTGAATCACATTCGATCACAAGA 59.300 36.000 0.00 0.00 42.15 3.02
4106 4901 3.670055 GGTTCAAGATTGTTTGCACGATG 59.330 43.478 0.00 0.00 0.00 3.84
4135 4930 0.038159 AGCTCCTGTCGCACAGTAAC 60.038 55.000 13.06 4.50 44.50 2.50
4169 4970 3.745803 GGCTCAAGCTGCTGGCAC 61.746 66.667 18.91 6.30 44.79 5.01
4170 4971 3.962694 AGGCTCAAGCTGCTGGCA 61.963 61.111 18.91 0.00 44.79 4.92
4171 4972 3.441290 CAGGCTCAAGCTGCTGGC 61.441 66.667 1.35 8.41 41.70 4.85
4172 4973 1.584380 GAACAGGCTCAAGCTGCTGG 61.584 60.000 1.35 0.00 41.70 4.85
4173 4974 1.874562 GAACAGGCTCAAGCTGCTG 59.125 57.895 1.35 4.54 41.70 4.41
4174 4975 1.670406 CGAACAGGCTCAAGCTGCT 60.670 57.895 0.00 0.00 41.70 4.24
4175 4976 2.684843 CCGAACAGGCTCAAGCTGC 61.685 63.158 1.46 0.00 41.70 5.25
4176 4977 3.571119 CCGAACAGGCTCAAGCTG 58.429 61.111 1.46 1.50 41.70 4.24
4185 4986 3.423154 GTCGCCTTGCCGAACAGG 61.423 66.667 0.00 0.00 39.17 4.00
4186 4987 1.577328 ATTGTCGCCTTGCCGAACAG 61.577 55.000 0.00 0.00 39.17 3.16
4187 4988 1.573829 GATTGTCGCCTTGCCGAACA 61.574 55.000 0.00 0.00 39.17 3.18
4188 4989 1.134694 GATTGTCGCCTTGCCGAAC 59.865 57.895 0.00 0.00 39.17 3.95
4189 4990 0.886938 TTGATTGTCGCCTTGCCGAA 60.887 50.000 0.00 0.00 39.17 4.30
4190 4991 1.298157 CTTGATTGTCGCCTTGCCGA 61.298 55.000 0.00 0.00 34.40 5.54
4191 4992 1.135315 CTTGATTGTCGCCTTGCCG 59.865 57.895 0.00 0.00 0.00 5.69
4192 4993 1.153958 GCTTGATTGTCGCCTTGCC 60.154 57.895 0.00 0.00 0.00 4.52
4193 4994 0.171903 ATGCTTGATTGTCGCCTTGC 59.828 50.000 0.00 0.00 0.00 4.01
4194 4995 2.256174 CAATGCTTGATTGTCGCCTTG 58.744 47.619 0.00 0.00 37.29 3.61
4195 4996 2.642139 CAATGCTTGATTGTCGCCTT 57.358 45.000 0.00 0.00 37.29 4.35
4202 5003 1.135315 CCGGGACACAATGCTTGATTG 60.135 52.381 0.00 0.00 46.20 2.67
4247 5048 4.022464 ACGTTTTTCAAGCGACAATCAA 57.978 36.364 0.00 0.00 0.00 2.57
4252 5053 3.750639 AAGAACGTTTTTCAAGCGACA 57.249 38.095 0.46 0.00 0.00 4.35
4253 5054 9.698617 ATAATATAAGAACGTTTTTCAAGCGAC 57.301 29.630 7.42 0.00 0.00 5.19
4254 5055 9.697250 CATAATATAAGAACGTTTTTCAAGCGA 57.303 29.630 7.42 0.00 0.00 4.93
4255 5056 8.943925 CCATAATATAAGAACGTTTTTCAAGCG 58.056 33.333 7.42 0.00 0.00 4.68
4256 5057 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
4262 5063 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
4263 5064 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
4264 5065 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
4265 5066 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
4267 5068 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
4270 5071 7.148052 CGTACTCCCTCTGTCCCATAATATAAG 60.148 44.444 0.00 0.00 0.00 1.73
4272 5073 6.185511 CGTACTCCCTCTGTCCCATAATATA 58.814 44.000 0.00 0.00 0.00 0.86
4273 5074 5.017490 CGTACTCCCTCTGTCCCATAATAT 58.983 45.833 0.00 0.00 0.00 1.28
4276 5152 2.024655 ACGTACTCCCTCTGTCCCATAA 60.025 50.000 0.00 0.00 0.00 1.90
4278 5154 0.335361 ACGTACTCCCTCTGTCCCAT 59.665 55.000 0.00 0.00 0.00 4.00
4282 5158 5.121811 TGTCTATTACGTACTCCCTCTGTC 58.878 45.833 0.00 0.00 0.00 3.51
4285 5161 7.123847 ACAAATTGTCTATTACGTACTCCCTCT 59.876 37.037 0.00 0.00 0.00 3.69
4329 5207 6.890268 AGAGGTCTTGTTCTTTTTAACTTGGT 59.110 34.615 0.00 0.00 0.00 3.67
4331 5209 9.326413 TCTAGAGGTCTTGTTCTTTTTAACTTG 57.674 33.333 0.00 0.00 0.00 3.16
4339 5220 6.987404 GTCTTGTTCTAGAGGTCTTGTTCTTT 59.013 38.462 0.00 0.00 0.00 2.52
4346 5227 2.891580 TGCGTCTTGTTCTAGAGGTCTT 59.108 45.455 0.00 0.00 33.65 3.01
4349 5230 2.628657 AGTTGCGTCTTGTTCTAGAGGT 59.371 45.455 0.00 0.00 33.65 3.85
4375 5364 3.654273 TGGAGGGAGTACTAAATCCAGG 58.346 50.000 15.14 0.00 37.33 4.45
4423 5412 5.876651 AGATGTTCTGGACTACATGCATA 57.123 39.130 0.00 0.00 35.24 3.14
4427 5416 6.471233 TCCTAAGATGTTCTGGACTACATG 57.529 41.667 0.00 0.00 35.24 3.21
4451 5454 9.381038 TCAGCTACTCCCTCTATTTACAAATAT 57.619 33.333 0.00 0.00 31.03 1.28
4462 5465 6.449830 TGTGTATATCAGCTACTCCCTCTA 57.550 41.667 0.00 0.00 0.00 2.43
4466 5469 5.531122 TGTTGTGTATATCAGCTACTCCC 57.469 43.478 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.