Multiple sequence alignment - TraesCS1B01G183100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G183100 chr1B 100.000 2678 0 0 1 2678 329961910 329959233 0.000000e+00 4946.0
1 TraesCS1B01G183100 chr1B 90.535 243 21 2 2436 2677 114918069 114917828 1.200000e-83 320.0
2 TraesCS1B01G183100 chr1B 89.286 252 25 2 2428 2678 247402772 247403022 5.570000e-82 315.0
3 TraesCS1B01G183100 chr1A 94.453 1947 64 23 507 2431 299426439 299424515 0.000000e+00 2957.0
4 TraesCS1B01G183100 chr1A 77.454 652 125 17 1033 1667 298646751 298646105 1.170000e-98 370.0
5 TraesCS1B01G183100 chr1A 85.498 331 46 2 1338 1667 298636165 298635836 7.100000e-91 344.0
6 TraesCS1B01G183100 chr1D 94.593 1461 50 6 500 1958 247838469 247839902 0.000000e+00 2233.0
7 TraesCS1B01G183100 chr1D 94.235 503 24 5 1936 2433 247839913 247840415 0.000000e+00 763.0
8 TraesCS1B01G183100 chr1D 92.042 289 23 0 2145 2433 266233183 266233471 8.930000e-110 407.0
9 TraesCS1B01G183100 chr1D 92.780 277 15 4 1 272 247827174 247827450 1.930000e-106 396.0
10 TraesCS1B01G183100 chr1D 90.441 136 12 1 372 507 247830256 247830390 7.620000e-41 178.0
11 TraesCS1B01G183100 chr1D 93.860 114 6 1 261 373 247830108 247830221 1.270000e-38 171.0
12 TraesCS1B01G183100 chr1D 100.000 28 0 0 202 229 238650115 238650142 5.000000e-03 52.8
13 TraesCS1B01G183100 chr6A 86.473 828 82 18 910 1728 48193995 48193189 0.000000e+00 881.0
14 TraesCS1B01G183100 chr6A 89.189 111 11 1 396 505 273133499 273133389 1.290000e-28 137.0
15 TraesCS1B01G183100 chr6D 90.255 667 57 6 1018 1679 36629124 36628461 0.000000e+00 865.0
16 TraesCS1B01G183100 chr6D 93.080 289 20 0 2145 2433 136122543 136122255 8.860000e-115 424.0
17 TraesCS1B01G183100 chr6D 91.638 287 23 1 2145 2431 326767347 326767632 1.930000e-106 396.0
18 TraesCS1B01G183100 chr6B 90.105 667 58 6 1018 1679 84927787 84927124 0.000000e+00 859.0
19 TraesCS1B01G183100 chr7A 79.248 665 107 26 1023 1667 120793508 120794161 4.090000e-118 435.0
20 TraesCS1B01G183100 chr7B 79.260 622 101 20 1064 1665 75790773 75791386 2.480000e-110 409.0
21 TraesCS1B01G183100 chr7B 91.093 247 21 1 2433 2678 443138491 443138737 1.540000e-87 333.0
22 TraesCS1B01G183100 chr5D 91.349 289 25 0 2145 2433 75376704 75376416 1.930000e-106 396.0
23 TraesCS1B01G183100 chr5D 89.919 248 23 2 2432 2677 248078111 248078358 4.300000e-83 318.0
24 TraesCS1B01G183100 chr5A 91.003 289 22 2 2145 2433 70588892 70588608 1.160000e-103 387.0
25 TraesCS1B01G183100 chrUn 90.278 288 26 1 2148 2433 77426382 77426095 2.520000e-100 375.0
26 TraesCS1B01G183100 chr5B 88.927 289 29 1 2145 2433 83867849 83867564 1.180000e-93 353.0
27 TraesCS1B01G183100 chr5B 90.323 248 22 2 2432 2678 145130422 145130176 9.250000e-85 324.0
28 TraesCS1B01G183100 chr4D 88.621 290 24 5 222 503 34671829 34671541 7.100000e-91 344.0
29 TraesCS1B01G183100 chr3B 92.213 244 18 1 2436 2678 320896048 320896291 7.100000e-91 344.0
30 TraesCS1B01G183100 chr3B 90.283 247 21 3 2434 2678 425332989 425332744 1.200000e-83 320.0
31 TraesCS1B01G183100 chr3B 89.919 248 23 2 2432 2678 224322140 224322386 4.300000e-83 318.0
32 TraesCS1B01G183100 chr3B 89.879 247 24 1 2433 2678 188101574 188101820 1.550000e-82 316.0
33 TraesCS1B01G183100 chr3B 80.612 98 18 1 131 227 811497720 811497623 1.030000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G183100 chr1B 329959233 329961910 2677 True 4946.000000 4946 100.000000 1 2678 1 chr1B.!!$R2 2677
1 TraesCS1B01G183100 chr1A 299424515 299426439 1924 True 2957.000000 2957 94.453000 507 2431 1 chr1A.!!$R3 1924
2 TraesCS1B01G183100 chr1A 298646105 298646751 646 True 370.000000 370 77.454000 1033 1667 1 chr1A.!!$R2 634
3 TraesCS1B01G183100 chr1D 247838469 247840415 1946 False 1498.000000 2233 94.414000 500 2433 2 chr1D.!!$F4 1933
4 TraesCS1B01G183100 chr1D 247827174 247830390 3216 False 248.333333 396 92.360333 1 507 3 chr1D.!!$F3 506
5 TraesCS1B01G183100 chr6A 48193189 48193995 806 True 881.000000 881 86.473000 910 1728 1 chr6A.!!$R1 818
6 TraesCS1B01G183100 chr6D 36628461 36629124 663 True 865.000000 865 90.255000 1018 1679 1 chr6D.!!$R1 661
7 TraesCS1B01G183100 chr6B 84927124 84927787 663 True 859.000000 859 90.105000 1018 1679 1 chr6B.!!$R1 661
8 TraesCS1B01G183100 chr7A 120793508 120794161 653 False 435.000000 435 79.248000 1023 1667 1 chr7A.!!$F1 644
9 TraesCS1B01G183100 chr7B 75790773 75791386 613 False 409.000000 409 79.260000 1064 1665 1 chr7B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 3557 0.528924 TGTTCTACGGTCCATGGTCG 59.471 55.0 22.0 22.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2491 5273 0.10412 CGTATCAGGCCGTTGATGGA 59.896 55.0 15.92 0.0 38.25 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 101 6.710744 TCAGAGTCAAAGGTGAATTTTCTACC 59.289 38.462 0.00 0.00 34.87 3.18
137 142 6.449956 TCTACTTCATCATAAAGTACCCCCT 58.550 40.000 0.00 0.00 38.00 4.79
145 150 0.616964 AAAGTACCCCCTCCGTCCTC 60.617 60.000 0.00 0.00 0.00 3.71
156 161 4.141574 CCCCTCCGTCCTCAAATAAATACA 60.142 45.833 0.00 0.00 0.00 2.29
221 226 7.679783 TGAATCACTTATTTTGAGACAGAGGA 58.320 34.615 0.00 0.00 0.00 3.71
241 246 8.088981 CAGAGGAAGTAACAAGTAACAGTACAT 58.911 37.037 0.00 0.00 32.12 2.29
275 2950 7.767250 TCTCACTAGTCCCATTATATGTCTG 57.233 40.000 0.00 0.00 0.00 3.51
288 2963 7.228706 CCATTATATGTCTGGTTACTCCAAACC 59.771 40.741 0.00 0.00 46.59 3.27
425 3137 8.927721 CATTTTCTATGATCTCAGCACTCATAG 58.072 37.037 10.96 10.96 45.24 2.23
430 3142 5.465532 TGATCTCAGCACTCATAGGATTC 57.534 43.478 0.00 0.00 0.00 2.52
446 3158 5.057843 AGGATTCAAGATACATGCACCAT 57.942 39.130 0.00 0.00 0.00 3.55
452 3164 9.403110 GATTCAAGATACATGCACCATATTTTC 57.597 33.333 0.00 0.00 0.00 2.29
608 3326 3.307242 CGAGAAATCAGCCGGTCTAAAAG 59.693 47.826 1.90 0.00 0.00 2.27
613 3331 3.814005 TCAGCCGGTCTAAAAGGATAC 57.186 47.619 1.90 0.00 0.00 2.24
642 3360 7.561251 TCCGTGATCTAATGGATAAACAAAGA 58.439 34.615 0.00 0.00 34.33 2.52
643 3361 8.210946 TCCGTGATCTAATGGATAAACAAAGAT 58.789 33.333 0.00 0.00 34.33 2.40
644 3362 9.489084 CCGTGATCTAATGGATAAACAAAGATA 57.511 33.333 0.00 0.00 34.33 1.98
837 3556 2.754946 TTGTTCTACGGTCCATGGTC 57.245 50.000 12.58 5.95 0.00 4.02
838 3557 0.528924 TGTTCTACGGTCCATGGTCG 59.471 55.000 22.00 22.00 0.00 4.79
904 3623 1.775385 TCACTACCATCAGGCATCGA 58.225 50.000 0.00 0.00 39.06 3.59
1202 3922 2.070654 AAAACCTTCAACCAGCGCGG 62.071 55.000 8.83 15.25 42.50 6.46
1700 4435 2.627945 GCACGATAAGTTGATGGGTCA 58.372 47.619 0.00 0.00 0.00 4.02
1741 4476 3.423571 ACGCACTACTTCGAATAAGACG 58.576 45.455 12.42 15.16 0.00 4.18
1793 4528 7.984422 ACTGAAATGATCAACAGAACATGTA 57.016 32.000 24.36 0.00 43.00 2.29
1805 4540 4.703575 ACAGAACATGTACCTTACGCTCTA 59.296 41.667 0.00 0.00 41.60 2.43
1866 4601 7.582435 ATCGACTTTGAGTTACATGTTACTG 57.418 36.000 21.41 9.88 0.00 2.74
1900 4638 2.707039 ACGTGAGTGCGTTTGTGC 59.293 55.556 0.00 0.00 46.97 4.57
2176 4955 7.809806 CAGCTAGTTTTGAAATAGAAAACCCTG 59.190 37.037 0.00 0.00 42.03 4.45
2177 4956 7.039714 AGCTAGTTTTGAAATAGAAAACCCTGG 60.040 37.037 0.00 0.00 42.03 4.45
2194 4973 4.346709 ACCCTGGAAATTAGGTTTTGTTGG 59.653 41.667 0.00 0.00 33.31 3.77
2222 5003 5.550290 AGCCCATTTTAGATTGTTTTGTGG 58.450 37.500 0.00 0.00 0.00 4.17
2255 5036 9.071221 TGATTCCAATAATCGAATTCGTTTTTG 57.929 29.630 25.93 24.05 40.80 2.44
2372 5154 2.526304 GCCAAGTGCCACGAGATATA 57.474 50.000 0.00 0.00 0.00 0.86
2390 5172 1.466025 TACACCTGGTTTCCGAGCGT 61.466 55.000 0.00 0.00 0.00 5.07
2421 5203 0.036671 TGATGCACTCACTGAGCCTG 60.037 55.000 5.92 0.00 32.04 4.85
2433 5215 1.600916 GAGCCTGGCGTTGGAAGTT 60.601 57.895 13.96 0.00 0.00 2.66
2434 5216 1.856265 GAGCCTGGCGTTGGAAGTTG 61.856 60.000 13.96 0.00 0.00 3.16
2435 5217 2.193536 GCCTGGCGTTGGAAGTTGT 61.194 57.895 1.35 0.00 0.00 3.32
2436 5218 1.949257 CCTGGCGTTGGAAGTTGTC 59.051 57.895 0.00 0.00 0.00 3.18
2437 5219 1.569493 CTGGCGTTGGAAGTTGTCG 59.431 57.895 0.00 0.00 0.00 4.35
2438 5220 1.841663 CTGGCGTTGGAAGTTGTCGG 61.842 60.000 0.00 0.00 0.00 4.79
2439 5221 2.251371 GCGTTGGAAGTTGTCGGC 59.749 61.111 0.00 0.00 0.00 5.54
2440 5222 2.549282 CGTTGGAAGTTGTCGGCG 59.451 61.111 0.00 0.00 0.00 6.46
2441 5223 2.241880 CGTTGGAAGTTGTCGGCGT 61.242 57.895 6.85 0.00 0.00 5.68
2442 5224 1.768112 CGTTGGAAGTTGTCGGCGTT 61.768 55.000 6.85 0.00 0.00 4.84
2443 5225 0.041576 GTTGGAAGTTGTCGGCGTTC 60.042 55.000 6.85 2.33 0.00 3.95
2444 5226 0.179067 TTGGAAGTTGTCGGCGTTCT 60.179 50.000 6.85 0.00 0.00 3.01
2445 5227 0.878523 TGGAAGTTGTCGGCGTTCTG 60.879 55.000 6.85 0.00 0.00 3.02
2446 5228 1.566018 GGAAGTTGTCGGCGTTCTGG 61.566 60.000 6.85 0.00 0.00 3.86
2447 5229 0.599204 GAAGTTGTCGGCGTTCTGGA 60.599 55.000 6.85 0.00 0.00 3.86
2448 5230 0.034896 AAGTTGTCGGCGTTCTGGAT 59.965 50.000 6.85 0.00 0.00 3.41
2449 5231 0.892755 AGTTGTCGGCGTTCTGGATA 59.107 50.000 6.85 0.00 0.00 2.59
2450 5232 0.997196 GTTGTCGGCGTTCTGGATAC 59.003 55.000 6.85 0.00 0.00 2.24
2451 5233 0.457166 TTGTCGGCGTTCTGGATACG 60.457 55.000 6.85 0.00 41.71 3.06
2453 5235 2.279252 CGGCGTTCTGGATACGGG 60.279 66.667 0.00 0.00 45.79 5.28
2454 5236 2.108362 GGCGTTCTGGATACGGGG 59.892 66.667 0.00 0.00 45.79 5.73
2455 5237 2.728435 GGCGTTCTGGATACGGGGT 61.728 63.158 0.00 0.00 45.79 4.95
2456 5238 1.394266 GGCGTTCTGGATACGGGGTA 61.394 60.000 0.00 0.00 45.79 3.69
2457 5239 0.677842 GCGTTCTGGATACGGGGTAT 59.322 55.000 0.00 0.00 45.79 2.73
2458 5240 1.336609 GCGTTCTGGATACGGGGTATC 60.337 57.143 7.14 7.14 45.79 2.24
2466 5248 3.662247 GATACGGGGTATCCAGACTTG 57.338 52.381 0.00 0.00 38.99 3.16
2467 5249 1.117150 TACGGGGTATCCAGACTTGC 58.883 55.000 0.00 0.00 34.36 4.01
2468 5250 1.146263 CGGGGTATCCAGACTTGCC 59.854 63.158 0.00 0.00 34.36 4.52
2469 5251 1.338136 CGGGGTATCCAGACTTGCCT 61.338 60.000 0.00 0.00 34.36 4.75
2470 5252 0.181350 GGGGTATCCAGACTTGCCTG 59.819 60.000 0.00 0.00 35.00 4.85
2471 5253 0.464554 GGGTATCCAGACTTGCCTGC 60.465 60.000 0.00 0.00 32.97 4.85
2472 5254 0.464554 GGTATCCAGACTTGCCTGCC 60.465 60.000 0.00 0.00 32.97 4.85
2473 5255 0.543749 GTATCCAGACTTGCCTGCCT 59.456 55.000 0.00 0.00 32.97 4.75
2474 5256 0.543277 TATCCAGACTTGCCTGCCTG 59.457 55.000 0.00 0.00 32.97 4.85
2475 5257 2.833604 ATCCAGACTTGCCTGCCTGC 62.834 60.000 0.00 0.00 32.97 4.85
2476 5258 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
2477 5259 4.711949 AGACTTGCCTGCCTGCGG 62.712 66.667 0.00 0.00 0.00 5.69
2497 5279 2.046988 CACTGCGTGGCTCCATCA 60.047 61.111 0.00 0.00 0.00 3.07
2498 5280 1.672030 CACTGCGTGGCTCCATCAA 60.672 57.895 0.00 0.00 0.00 2.57
2499 5281 1.672356 ACTGCGTGGCTCCATCAAC 60.672 57.895 0.00 0.00 0.00 3.18
2500 5282 2.741985 TGCGTGGCTCCATCAACG 60.742 61.111 0.00 0.00 0.00 4.10
2501 5283 3.499737 GCGTGGCTCCATCAACGG 61.500 66.667 0.00 0.00 0.00 4.44
2502 5284 3.499737 CGTGGCTCCATCAACGGC 61.500 66.667 0.00 0.00 0.00 5.68
2503 5285 3.134127 GTGGCTCCATCAACGGCC 61.134 66.667 0.00 0.00 44.31 6.13
2504 5286 3.329889 TGGCTCCATCAACGGCCT 61.330 61.111 0.00 0.00 44.36 5.19
2505 5287 2.825836 GGCTCCATCAACGGCCTG 60.826 66.667 0.00 0.00 41.20 4.85
2506 5288 2.268920 GCTCCATCAACGGCCTGA 59.731 61.111 0.00 0.00 0.00 3.86
2507 5289 1.153086 GCTCCATCAACGGCCTGAT 60.153 57.895 0.00 0.44 36.45 2.90
2508 5290 0.106708 GCTCCATCAACGGCCTGATA 59.893 55.000 7.14 0.00 34.20 2.15
2509 5291 1.871080 CTCCATCAACGGCCTGATAC 58.129 55.000 7.14 0.00 34.20 2.24
2510 5292 0.104120 TCCATCAACGGCCTGATACG 59.896 55.000 7.14 1.94 34.20 3.06
2511 5293 0.104120 CCATCAACGGCCTGATACGA 59.896 55.000 7.14 0.00 34.20 3.43
2512 5294 1.209128 CATCAACGGCCTGATACGAC 58.791 55.000 7.14 0.00 34.20 4.34
2513 5295 0.104304 ATCAACGGCCTGATACGACC 59.896 55.000 5.70 0.00 34.20 4.79
2514 5296 1.520787 CAACGGCCTGATACGACCC 60.521 63.158 0.00 0.00 0.00 4.46
2515 5297 1.985662 AACGGCCTGATACGACCCA 60.986 57.895 0.00 0.00 0.00 4.51
2516 5298 1.956629 AACGGCCTGATACGACCCAG 61.957 60.000 0.00 0.00 0.00 4.45
2517 5299 2.109181 GGCCTGATACGACCCAGC 59.891 66.667 0.00 0.00 0.00 4.85
2518 5300 2.435693 GGCCTGATACGACCCAGCT 61.436 63.158 0.00 0.00 0.00 4.24
2519 5301 1.522569 GCCTGATACGACCCAGCTT 59.477 57.895 0.00 0.00 0.00 3.74
2520 5302 0.530870 GCCTGATACGACCCAGCTTC 60.531 60.000 0.00 0.00 0.00 3.86
2521 5303 0.824109 CCTGATACGACCCAGCTTCA 59.176 55.000 0.00 0.00 0.00 3.02
2522 5304 1.202463 CCTGATACGACCCAGCTTCAG 60.202 57.143 0.00 1.54 0.00 3.02
2523 5305 0.175760 TGATACGACCCAGCTTCAGC 59.824 55.000 0.00 0.00 42.49 4.26
2524 5306 0.175760 GATACGACCCAGCTTCAGCA 59.824 55.000 0.75 0.00 45.16 4.41
2525 5307 0.833287 ATACGACCCAGCTTCAGCAT 59.167 50.000 0.75 0.00 45.16 3.79
2526 5308 0.175760 TACGACCCAGCTTCAGCATC 59.824 55.000 0.75 0.00 45.16 3.91
2527 5309 2.169789 CGACCCAGCTTCAGCATCG 61.170 63.158 0.75 1.47 45.16 3.84
2528 5310 1.219124 GACCCAGCTTCAGCATCGA 59.781 57.895 0.75 0.00 45.16 3.59
2529 5311 1.078848 ACCCAGCTTCAGCATCGAC 60.079 57.895 0.75 0.00 45.16 4.20
2530 5312 1.078918 CCCAGCTTCAGCATCGACA 60.079 57.895 0.75 0.00 45.16 4.35
2531 5313 0.674581 CCCAGCTTCAGCATCGACAA 60.675 55.000 0.75 0.00 45.16 3.18
2532 5314 0.445436 CCAGCTTCAGCATCGACAAC 59.555 55.000 0.75 0.00 45.16 3.32
2533 5315 1.436600 CAGCTTCAGCATCGACAACT 58.563 50.000 0.75 0.00 45.16 3.16
2534 5316 1.392853 CAGCTTCAGCATCGACAACTC 59.607 52.381 0.75 0.00 45.16 3.01
2535 5317 1.001293 AGCTTCAGCATCGACAACTCA 59.999 47.619 0.75 0.00 45.16 3.41
2536 5318 1.800586 GCTTCAGCATCGACAACTCAA 59.199 47.619 0.00 0.00 41.59 3.02
2537 5319 2.159734 GCTTCAGCATCGACAACTCAAG 60.160 50.000 0.00 0.00 41.59 3.02
2538 5320 3.320626 CTTCAGCATCGACAACTCAAGA 58.679 45.455 0.00 0.00 0.00 3.02
2539 5321 2.677199 TCAGCATCGACAACTCAAGAC 58.323 47.619 0.00 0.00 0.00 3.01
2540 5322 1.728971 CAGCATCGACAACTCAAGACC 59.271 52.381 0.00 0.00 0.00 3.85
2541 5323 1.620819 AGCATCGACAACTCAAGACCT 59.379 47.619 0.00 0.00 0.00 3.85
2542 5324 2.037772 AGCATCGACAACTCAAGACCTT 59.962 45.455 0.00 0.00 0.00 3.50
2543 5325 2.413453 GCATCGACAACTCAAGACCTTC 59.587 50.000 0.00 0.00 0.00 3.46
2544 5326 2.417339 TCGACAACTCAAGACCTTCG 57.583 50.000 0.00 0.00 0.00 3.79
2545 5327 1.000607 TCGACAACTCAAGACCTTCGG 60.001 52.381 0.00 0.00 0.00 4.30
2546 5328 1.797025 GACAACTCAAGACCTTCGGG 58.203 55.000 0.00 0.00 41.87 5.14
2547 5329 1.343465 GACAACTCAAGACCTTCGGGA 59.657 52.381 0.00 0.00 38.77 5.14
2548 5330 1.344763 ACAACTCAAGACCTTCGGGAG 59.655 52.381 0.00 0.00 38.77 4.30
2556 5338 4.115199 CCTTCGGGAGGGGCCAAG 62.115 72.222 4.39 0.00 42.26 3.61
2557 5339 4.803908 CTTCGGGAGGGGCCAAGC 62.804 72.222 4.39 0.00 38.95 4.01
2584 5366 3.185155 CGGACGACGCTAAGACCT 58.815 61.111 0.00 0.00 34.82 3.85
2585 5367 1.062206 CGGACGACGCTAAGACCTC 59.938 63.158 0.00 0.00 34.82 3.85
2586 5368 1.432657 GGACGACGCTAAGACCTCC 59.567 63.158 0.00 0.00 0.00 4.30
2587 5369 1.310933 GGACGACGCTAAGACCTCCA 61.311 60.000 0.00 0.00 0.00 3.86
2588 5370 0.524862 GACGACGCTAAGACCTCCAA 59.475 55.000 0.00 0.00 0.00 3.53
2589 5371 0.526662 ACGACGCTAAGACCTCCAAG 59.473 55.000 0.00 0.00 0.00 3.61
2590 5372 0.179134 CGACGCTAAGACCTCCAAGG 60.179 60.000 0.00 0.00 42.49 3.61
2591 5373 0.175989 GACGCTAAGACCTCCAAGGG 59.824 60.000 0.00 0.00 40.58 3.95
2592 5374 1.265454 ACGCTAAGACCTCCAAGGGG 61.265 60.000 0.00 0.00 40.58 4.79
2593 5375 1.265454 CGCTAAGACCTCCAAGGGGT 61.265 60.000 0.00 0.00 40.58 4.95
2597 5379 3.400054 GACCTCCAAGGGGTCCGG 61.400 72.222 1.92 0.00 45.31 5.14
2608 5390 4.779733 GGTCCGGCCTCCTCAGGA 62.780 72.222 0.00 0.00 43.65 3.86
2609 5391 2.444895 GTCCGGCCTCCTCAGGAT 60.445 66.667 0.00 0.00 43.65 3.24
2610 5392 2.444706 TCCGGCCTCCTCAGGATG 60.445 66.667 0.00 0.00 43.65 3.51
2611 5393 3.554342 CCGGCCTCCTCAGGATGG 61.554 72.222 0.00 0.00 43.65 3.51
2612 5394 4.247380 CGGCCTCCTCAGGATGGC 62.247 72.222 20.55 20.55 43.65 4.40
2613 5395 2.771762 GGCCTCCTCAGGATGGCT 60.772 66.667 25.06 0.00 43.65 4.75
2614 5396 2.381941 GGCCTCCTCAGGATGGCTT 61.382 63.158 25.06 0.00 43.65 4.35
2615 5397 1.148048 GCCTCCTCAGGATGGCTTC 59.852 63.158 21.13 0.00 43.65 3.86
2616 5398 1.835693 CCTCCTCAGGATGGCTTCC 59.164 63.158 11.32 11.32 43.65 3.46
2623 5405 4.132999 GGATGGCTTCCGAGAAGC 57.867 61.111 22.75 22.75 42.30 3.86
2624 5406 1.884926 GGATGGCTTCCGAGAAGCG 60.885 63.158 23.42 0.00 43.89 4.68
2637 5419 3.238441 CGAGAAGCGGAGACTTATATGC 58.762 50.000 0.00 0.00 36.03 3.14
2638 5420 3.304726 CGAGAAGCGGAGACTTATATGCA 60.305 47.826 0.00 0.00 36.03 3.96
2639 5421 4.621991 GAGAAGCGGAGACTTATATGCAA 58.378 43.478 0.00 0.00 0.00 4.08
2640 5422 4.626042 AGAAGCGGAGACTTATATGCAAG 58.374 43.478 0.00 0.00 0.00 4.01
2641 5423 3.393089 AGCGGAGACTTATATGCAAGG 57.607 47.619 0.00 0.00 0.00 3.61
2642 5424 2.700897 AGCGGAGACTTATATGCAAGGT 59.299 45.455 0.00 0.00 0.00 3.50
2643 5425 2.802816 GCGGAGACTTATATGCAAGGTG 59.197 50.000 0.00 0.00 0.00 4.00
2644 5426 2.802816 CGGAGACTTATATGCAAGGTGC 59.197 50.000 0.00 0.00 45.29 5.01
2663 5445 4.586618 CCTCACGAGGCTCAGTTG 57.413 61.111 15.95 8.29 42.44 3.16
2664 5446 1.967535 CCTCACGAGGCTCAGTTGA 59.032 57.895 15.95 12.11 42.44 3.18
2665 5447 0.389166 CCTCACGAGGCTCAGTTGAC 60.389 60.000 15.95 0.00 42.44 3.18
2666 5448 0.730834 CTCACGAGGCTCAGTTGACG 60.731 60.000 15.95 1.26 0.00 4.35
2667 5449 1.007271 CACGAGGCTCAGTTGACGT 60.007 57.895 15.95 1.98 34.40 4.34
2668 5450 1.007271 ACGAGGCTCAGTTGACGTG 60.007 57.895 15.95 0.00 32.93 4.49
2669 5451 1.285950 CGAGGCTCAGTTGACGTGA 59.714 57.895 15.95 0.00 0.00 4.35
2670 5452 0.730834 CGAGGCTCAGTTGACGTGAG 60.731 60.000 15.95 0.00 43.77 3.51
2674 5456 3.521995 CTCAGTTGACGTGAGCCAT 57.478 52.632 0.00 0.00 35.33 4.40
2675 5457 1.073964 CTCAGTTGACGTGAGCCATG 58.926 55.000 0.00 0.00 35.33 3.66
2676 5458 0.678950 TCAGTTGACGTGAGCCATGA 59.321 50.000 0.00 0.00 0.00 3.07
2677 5459 0.792640 CAGTTGACGTGAGCCATGAC 59.207 55.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 4.978580 GTGCAAGAAAGGTGAACATTCTTC 59.021 41.667 0.00 0.00 40.44 2.87
34 36 4.402155 TGTGCAAGAAAGGTGAACATTCTT 59.598 37.500 0.00 0.00 42.49 2.52
123 128 1.415289 GGACGGAGGGGGTACTTTATG 59.585 57.143 0.00 0.00 0.00 1.90
133 138 3.577805 ATTTATTTGAGGACGGAGGGG 57.422 47.619 0.00 0.00 0.00 4.79
137 142 7.747155 TGTTTTGTATTTATTTGAGGACGGA 57.253 32.000 0.00 0.00 0.00 4.69
199 204 7.684529 ACTTCCTCTGTCTCAAAATAAGTGAT 58.315 34.615 0.00 0.00 0.00 3.06
202 207 8.429641 TGTTACTTCCTCTGTCTCAAAATAAGT 58.570 33.333 0.00 0.00 0.00 2.24
216 221 7.592885 TGTACTGTTACTTGTTACTTCCTCT 57.407 36.000 0.00 0.00 0.00 3.69
275 2950 5.847111 ACTTTTTCAGGTTTGGAGTAACC 57.153 39.130 0.00 0.00 46.45 2.85
362 3038 8.544622 TGATTTACAGGATAGGAACACACATAA 58.455 33.333 0.00 0.00 0.00 1.90
369 3045 8.106462 TGTCATTTGATTTACAGGATAGGAACA 58.894 33.333 0.00 0.00 0.00 3.18
373 3049 9.956720 GAAATGTCATTTGATTTACAGGATAGG 57.043 33.333 15.52 0.00 31.47 2.57
410 3122 5.601729 TCTTGAATCCTATGAGTGCTGAGAT 59.398 40.000 0.00 0.00 0.00 2.75
414 3126 6.519382 TGTATCTTGAATCCTATGAGTGCTG 58.481 40.000 0.00 0.00 0.00 4.41
425 3137 7.458409 AATATGGTGCATGTATCTTGAATCC 57.542 36.000 0.00 0.00 0.00 3.01
464 3176 8.977412 TCGTAGGATATGAATTGCATAGGAATA 58.023 33.333 0.00 0.00 42.45 1.75
480 3192 4.951094 GGCTATCTCTGGTTCGTAGGATAT 59.049 45.833 0.00 0.00 0.00 1.63
484 3196 2.588620 AGGCTATCTCTGGTTCGTAGG 58.411 52.381 0.00 0.00 0.00 3.18
488 3200 4.657436 ACTTTAGGCTATCTCTGGTTCG 57.343 45.455 0.00 0.00 0.00 3.95
608 3326 6.522054 TCCATTAGATCACGGAAAAGTATCC 58.478 40.000 0.00 0.00 36.05 2.59
613 3331 8.208718 TGTTTATCCATTAGATCACGGAAAAG 57.791 34.615 0.00 0.00 36.33 2.27
642 3360 7.826252 CCTTATCTGCACTACAAGCCATATTAT 59.174 37.037 0.00 0.00 0.00 1.28
643 3361 7.161404 CCTTATCTGCACTACAAGCCATATTA 58.839 38.462 0.00 0.00 0.00 0.98
644 3362 6.000219 CCTTATCTGCACTACAAGCCATATT 59.000 40.000 0.00 0.00 0.00 1.28
805 3524 5.245526 ACCGTAGAACAATCCTTCTACTGTT 59.754 40.000 14.21 0.00 43.27 3.16
850 3569 6.532365 AAAGAATTGACTTGACTTCGTCTC 57.468 37.500 0.00 0.00 33.15 3.36
885 3604 1.409064 GTCGATGCCTGATGGTAGTGA 59.591 52.381 0.00 0.00 35.27 3.41
904 3623 7.849389 TGTGCTATGGGATTATATATAGGGTGT 59.151 37.037 0.00 0.00 0.00 4.16
1700 4435 2.682856 GTTATGCCATCACACCGTGAAT 59.317 45.455 5.28 0.00 45.96 2.57
1866 4601 2.601763 CACGTATCGCCAACTTAAGACC 59.398 50.000 10.09 0.00 0.00 3.85
1900 4638 3.337889 CGCACACTCACACCACCG 61.338 66.667 0.00 0.00 0.00 4.94
2138 4910 6.049149 TCAAAACTAGCTGCCACTACATATC 58.951 40.000 0.00 0.00 0.00 1.63
2139 4911 5.989477 TCAAAACTAGCTGCCACTACATAT 58.011 37.500 0.00 0.00 0.00 1.78
2176 4955 6.811665 GCTACATCCAACAAAACCTAATTTCC 59.188 38.462 0.00 0.00 0.00 3.13
2177 4956 6.811665 GGCTACATCCAACAAAACCTAATTTC 59.188 38.462 0.00 0.00 0.00 2.17
2194 4973 8.034804 ACAAAACAATCTAAAATGGGCTACATC 58.965 33.333 0.00 0.00 39.40 3.06
2255 5036 6.790285 ACACCAATTGCAAATCAAAGAATC 57.210 33.333 1.71 0.00 38.34 2.52
2364 5146 3.317149 TCGGAAACCAGGTGTATATCTCG 59.683 47.826 0.00 0.00 0.00 4.04
2372 5154 2.030562 CGCTCGGAAACCAGGTGT 59.969 61.111 0.00 0.00 0.00 4.16
2390 5172 3.056607 TGAGTGCATCACGAGAGATTTCA 60.057 43.478 0.00 0.00 39.64 2.69
2416 5198 1.898574 CAACTTCCAACGCCAGGCT 60.899 57.895 10.54 0.00 0.00 4.58
2421 5203 2.943653 CCGACAACTTCCAACGCC 59.056 61.111 0.00 0.00 0.00 5.68
2433 5215 1.138036 CGTATCCAGAACGCCGACA 59.862 57.895 0.00 0.00 33.04 4.35
2434 5216 1.588139 CCGTATCCAGAACGCCGAC 60.588 63.158 0.00 0.00 39.00 4.79
2435 5217 2.777972 CCCGTATCCAGAACGCCGA 61.778 63.158 0.00 0.00 39.00 5.54
2436 5218 2.279252 CCCGTATCCAGAACGCCG 60.279 66.667 0.00 0.00 39.00 6.46
2437 5219 1.394266 TACCCCGTATCCAGAACGCC 61.394 60.000 0.00 0.00 39.00 5.68
2438 5220 0.677842 ATACCCCGTATCCAGAACGC 59.322 55.000 0.00 0.00 39.00 4.84
2439 5221 2.719426 GATACCCCGTATCCAGAACG 57.281 55.000 1.08 0.00 38.99 3.95
2446 5228 2.288886 GCAAGTCTGGATACCCCGTATC 60.289 54.545 3.63 3.63 42.75 2.24
2447 5229 1.692519 GCAAGTCTGGATACCCCGTAT 59.307 52.381 0.00 0.00 37.93 3.06
2448 5230 1.117150 GCAAGTCTGGATACCCCGTA 58.883 55.000 0.00 0.00 37.93 4.02
2449 5231 1.623542 GGCAAGTCTGGATACCCCGT 61.624 60.000 0.00 0.00 37.93 5.28
2450 5232 1.146263 GGCAAGTCTGGATACCCCG 59.854 63.158 0.00 0.00 37.93 5.73
2451 5233 0.181350 CAGGCAAGTCTGGATACCCC 59.819 60.000 0.00 0.00 0.00 4.95
2452 5234 0.464554 GCAGGCAAGTCTGGATACCC 60.465 60.000 3.62 0.00 35.43 3.69
2453 5235 0.464554 GGCAGGCAAGTCTGGATACC 60.465 60.000 3.62 0.00 35.43 2.73
2454 5236 0.543749 AGGCAGGCAAGTCTGGATAC 59.456 55.000 3.62 0.00 35.43 2.24
2455 5237 0.543277 CAGGCAGGCAAGTCTGGATA 59.457 55.000 3.62 0.00 37.58 2.59
2456 5238 1.302285 CAGGCAGGCAAGTCTGGAT 59.698 57.895 3.62 0.00 37.58 3.41
2457 5239 2.752358 CAGGCAGGCAAGTCTGGA 59.248 61.111 3.62 0.00 37.58 3.86
2458 5240 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
2459 5241 3.429141 CGCAGGCAGGCAAGTCTG 61.429 66.667 7.14 7.14 43.93 3.51
2460 5242 4.711949 CCGCAGGCAGGCAAGTCT 62.712 66.667 0.00 0.00 46.14 3.24
2482 5264 2.743752 CGTTGATGGAGCCACGCAG 61.744 63.158 0.00 0.00 0.00 5.18
2483 5265 2.741985 CGTTGATGGAGCCACGCA 60.742 61.111 0.00 0.00 0.00 5.24
2484 5266 3.499737 CCGTTGATGGAGCCACGC 61.500 66.667 0.00 0.00 0.00 5.34
2485 5267 3.499737 GCCGTTGATGGAGCCACG 61.500 66.667 0.00 0.00 0.00 4.94
2486 5268 3.134127 GGCCGTTGATGGAGCCAC 61.134 66.667 0.00 0.00 45.07 5.01
2488 5270 2.615227 ATCAGGCCGTTGATGGAGCC 62.615 60.000 6.69 0.00 46.13 4.70
2489 5271 0.106708 TATCAGGCCGTTGATGGAGC 59.893 55.000 15.92 0.00 38.25 4.70
2490 5272 1.869754 CGTATCAGGCCGTTGATGGAG 60.870 57.143 15.92 5.18 38.25 3.86
2491 5273 0.104120 CGTATCAGGCCGTTGATGGA 59.896 55.000 15.92 0.00 38.25 3.41
2492 5274 0.104120 TCGTATCAGGCCGTTGATGG 59.896 55.000 15.92 8.93 38.25 3.51
2493 5275 1.209128 GTCGTATCAGGCCGTTGATG 58.791 55.000 15.92 0.11 38.25 3.07
2494 5276 0.104304 GGTCGTATCAGGCCGTTGAT 59.896 55.000 11.85 11.85 40.70 2.57
2495 5277 1.514087 GGTCGTATCAGGCCGTTGA 59.486 57.895 0.00 0.00 0.00 3.18
2496 5278 1.520787 GGGTCGTATCAGGCCGTTG 60.521 63.158 0.00 0.00 0.00 4.10
2497 5279 1.956629 CTGGGTCGTATCAGGCCGTT 61.957 60.000 0.00 0.00 0.00 4.44
2498 5280 2.363276 TGGGTCGTATCAGGCCGT 60.363 61.111 0.00 0.00 0.00 5.68
2499 5281 2.417516 CTGGGTCGTATCAGGCCG 59.582 66.667 0.00 0.00 0.00 6.13
2500 5282 1.972660 AAGCTGGGTCGTATCAGGCC 61.973 60.000 0.00 0.00 0.00 5.19
2501 5283 0.530870 GAAGCTGGGTCGTATCAGGC 60.531 60.000 0.00 0.00 0.00 4.85
2502 5284 0.824109 TGAAGCTGGGTCGTATCAGG 59.176 55.000 0.00 0.00 0.00 3.86
2503 5285 1.804372 GCTGAAGCTGGGTCGTATCAG 60.804 57.143 3.85 3.85 37.83 2.90
2504 5286 0.175760 GCTGAAGCTGGGTCGTATCA 59.824 55.000 0.00 0.00 38.21 2.15
2505 5287 0.175760 TGCTGAAGCTGGGTCGTATC 59.824 55.000 3.61 0.00 42.66 2.24
2506 5288 0.833287 ATGCTGAAGCTGGGTCGTAT 59.167 50.000 3.61 0.00 42.66 3.06
2507 5289 0.175760 GATGCTGAAGCTGGGTCGTA 59.824 55.000 3.61 0.00 42.66 3.43
2508 5290 1.078848 GATGCTGAAGCTGGGTCGT 60.079 57.895 3.61 0.00 42.66 4.34
2509 5291 2.169789 CGATGCTGAAGCTGGGTCG 61.170 63.158 3.61 5.02 42.66 4.79
2510 5292 1.086634 GTCGATGCTGAAGCTGGGTC 61.087 60.000 3.61 0.00 42.66 4.46
2511 5293 1.078848 GTCGATGCTGAAGCTGGGT 60.079 57.895 3.61 0.00 42.66 4.51
2512 5294 0.674581 TTGTCGATGCTGAAGCTGGG 60.675 55.000 3.61 0.00 42.66 4.45
2513 5295 0.445436 GTTGTCGATGCTGAAGCTGG 59.555 55.000 3.61 0.00 42.66 4.85
2514 5296 1.392853 GAGTTGTCGATGCTGAAGCTG 59.607 52.381 3.61 0.00 42.66 4.24
2515 5297 1.001293 TGAGTTGTCGATGCTGAAGCT 59.999 47.619 3.61 0.00 42.66 3.74
2516 5298 1.432514 TGAGTTGTCGATGCTGAAGC 58.567 50.000 0.00 0.00 42.50 3.86
2517 5299 3.122613 GTCTTGAGTTGTCGATGCTGAAG 59.877 47.826 0.00 0.00 0.00 3.02
2518 5300 3.059884 GTCTTGAGTTGTCGATGCTGAA 58.940 45.455 0.00 0.00 0.00 3.02
2519 5301 2.610479 GGTCTTGAGTTGTCGATGCTGA 60.610 50.000 0.00 0.00 0.00 4.26
2520 5302 1.728971 GGTCTTGAGTTGTCGATGCTG 59.271 52.381 0.00 0.00 0.00 4.41
2521 5303 1.620819 AGGTCTTGAGTTGTCGATGCT 59.379 47.619 0.00 0.00 0.00 3.79
2522 5304 2.086054 AGGTCTTGAGTTGTCGATGC 57.914 50.000 0.00 0.00 0.00 3.91
2523 5305 2.663602 CGAAGGTCTTGAGTTGTCGATG 59.336 50.000 0.00 0.00 0.00 3.84
2524 5306 2.947852 CGAAGGTCTTGAGTTGTCGAT 58.052 47.619 0.00 0.00 0.00 3.59
2525 5307 2.417339 CGAAGGTCTTGAGTTGTCGA 57.583 50.000 0.00 0.00 0.00 4.20
2540 5322 4.803908 GCTTGGCCCCTCCCGAAG 62.804 72.222 0.00 0.00 0.00 3.79
2567 5349 1.062206 GAGGTCTTAGCGTCGTCCG 59.938 63.158 0.00 0.00 40.40 4.79
2568 5350 1.310933 TGGAGGTCTTAGCGTCGTCC 61.311 60.000 0.00 0.00 36.61 4.79
2569 5351 0.524862 TTGGAGGTCTTAGCGTCGTC 59.475 55.000 0.00 0.00 0.00 4.20
2570 5352 0.526662 CTTGGAGGTCTTAGCGTCGT 59.473 55.000 0.00 0.00 0.00 4.34
2571 5353 0.179134 CCTTGGAGGTCTTAGCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
2572 5354 0.175989 CCCTTGGAGGTCTTAGCGTC 59.824 60.000 0.00 0.00 31.93 5.19
2573 5355 1.265454 CCCCTTGGAGGTCTTAGCGT 61.265 60.000 0.00 0.00 31.93 5.07
2574 5356 1.265454 ACCCCTTGGAGGTCTTAGCG 61.265 60.000 0.00 0.00 31.93 4.26
2575 5357 2.698168 ACCCCTTGGAGGTCTTAGC 58.302 57.895 0.00 0.00 31.93 3.09
2591 5373 4.779733 TCCTGAGGAGGCCGGACC 62.780 72.222 1.76 4.96 39.57 4.46
2592 5374 2.444895 ATCCTGAGGAGGCCGGAC 60.445 66.667 5.05 0.00 39.57 4.79
2593 5375 2.444706 CATCCTGAGGAGGCCGGA 60.445 66.667 5.05 0.00 39.57 5.14
2594 5376 3.554342 CCATCCTGAGGAGGCCGG 61.554 72.222 7.81 0.00 39.57 6.13
2595 5377 4.247380 GCCATCCTGAGGAGGCCG 62.247 72.222 23.30 7.67 38.87 6.13
2596 5378 2.336484 GAAGCCATCCTGAGGAGGCC 62.336 65.000 27.38 11.65 42.68 5.19
2597 5379 1.148048 GAAGCCATCCTGAGGAGGC 59.852 63.158 25.21 25.21 42.31 4.70
2598 5380 1.835693 GGAAGCCATCCTGAGGAGG 59.164 63.158 7.50 6.79 45.56 4.30
2599 5381 1.045350 TCGGAAGCCATCCTGAGGAG 61.045 60.000 7.50 0.00 46.98 3.69
2600 5382 1.001631 TCGGAAGCCATCCTGAGGA 59.998 57.895 2.43 2.43 46.98 3.71
2601 5383 1.045350 TCTCGGAAGCCATCCTGAGG 61.045 60.000 18.72 0.00 46.98 3.86
2602 5384 0.826715 TTCTCGGAAGCCATCCTGAG 59.173 55.000 15.55 15.55 46.98 3.35
2603 5385 0.826715 CTTCTCGGAAGCCATCCTGA 59.173 55.000 4.76 3.43 46.98 3.86
2604 5386 0.813210 GCTTCTCGGAAGCCATCCTG 60.813 60.000 21.17 0.00 46.98 3.86
2605 5387 1.524482 GCTTCTCGGAAGCCATCCT 59.476 57.895 21.17 0.00 46.98 3.24
2606 5388 1.884926 CGCTTCTCGGAAGCCATCC 60.885 63.158 23.94 0.00 45.57 3.51
2607 5389 3.711348 CGCTTCTCGGAAGCCATC 58.289 61.111 23.94 6.17 40.02 3.51
2616 5398 3.238441 GCATATAAGTCTCCGCTTCTCG 58.762 50.000 0.00 0.00 38.08 4.04
2617 5399 4.244425 TGCATATAAGTCTCCGCTTCTC 57.756 45.455 0.00 0.00 0.00 2.87
2618 5400 4.502259 CCTTGCATATAAGTCTCCGCTTCT 60.502 45.833 0.00 0.00 0.00 2.85
2619 5401 3.743396 CCTTGCATATAAGTCTCCGCTTC 59.257 47.826 0.00 0.00 0.00 3.86
2620 5402 3.134804 ACCTTGCATATAAGTCTCCGCTT 59.865 43.478 0.00 0.00 0.00 4.68
2621 5403 2.700897 ACCTTGCATATAAGTCTCCGCT 59.299 45.455 0.00 0.00 0.00 5.52
2622 5404 2.802816 CACCTTGCATATAAGTCTCCGC 59.197 50.000 0.00 0.00 0.00 5.54
2623 5405 2.802816 GCACCTTGCATATAAGTCTCCG 59.197 50.000 0.00 0.00 44.26 4.63
2647 5429 0.730834 CGTCAACTGAGCCTCGTGAG 60.731 60.000 0.00 0.00 0.00 3.51
2648 5430 1.285950 CGTCAACTGAGCCTCGTGA 59.714 57.895 0.00 0.00 0.00 4.35
2649 5431 1.007271 ACGTCAACTGAGCCTCGTG 60.007 57.895 0.00 0.00 0.00 4.35
2650 5432 1.007271 CACGTCAACTGAGCCTCGT 60.007 57.895 0.00 0.00 0.00 4.18
2651 5433 0.730834 CTCACGTCAACTGAGCCTCG 60.731 60.000 0.00 0.00 0.00 4.63
2652 5434 3.114558 CTCACGTCAACTGAGCCTC 57.885 57.895 0.00 0.00 0.00 4.70
2656 5438 1.073964 CATGGCTCACGTCAACTGAG 58.926 55.000 0.00 0.00 38.59 3.35
2657 5439 0.678950 TCATGGCTCACGTCAACTGA 59.321 50.000 0.00 0.00 0.00 3.41
2658 5440 0.792640 GTCATGGCTCACGTCAACTG 59.207 55.000 0.00 0.00 0.00 3.16
2659 5441 3.217242 GTCATGGCTCACGTCAACT 57.783 52.632 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.